This is the validation notebook that displays the regression tests for the NIRSpec instrument in the JWST calibration pipeline. This notebook runs and displays the regression tests that are performed as a part of the normal software continuous integration process. For more information on the pipeline visit the links below.
Pipeline description: https://jwst-pipeline.readthedocs.io/en/latest/index.html
Pipeline code: https://github.com/spacetelescope/jwst
JWST regression tests are located in the regtest folder of the pipeline within the GitHub repository.
These are terms or acronymns used in this notebook that may not be known a general audience.
JWST: James Webb Space Telescope
NIRSpec: Near-Infrared Camera
Regression testing is a software testing method which checks if the pipeline step produces the expected outcome by comparing an input file with a truth file. Truth files for testing are stored in Artifactory.
Data used for regression tests is stored in Artifactory, and consists of a mix of simulated and ground testing data for the different instruments and modes.
import os
if 'CRDS_CACHE_TYPE' in os.environ:
if os.environ['CRDS_CACHE_TYPE'] == 'local':
os.environ['CRDS_PATH'] = os.path.join(os.environ['HOME'], 'crds', 'cache')
elif os.path.isdir(os.environ['CRDS_CACHE_TYPE']):
os.environ['CRDS_PATH'] = os.environ['CRDS_CACHE_TYPE']
print('CRDS cache location: {}'.format(os.environ['CRDS_PATH']))
CRDS cache location: /grp/crds/cache
import tempfile
import os
import pytest
import jwst
from IPython.display import IFrame
from IPython.core.display import HTML
Here we define any convenience functions to help with running the unit tests.
print("Testing JWST Pipeline {}".format(jwst.__version__))
jwst_dir = os.path.dirname(jwst.__file__)
regtest = os.path.join(jwst_dir, 'regtest')
associations = os.path.join(jwst_dir, 'associations')
datamodels = os.path.join(jwst_dir, 'datamodels')
stpipe = os.path.join(jwst_dir, 'stpipe')
with tempfile.TemporaryDirectory() as tmpdir:
outdir = os.path.join(tmpdir, 'regtest_report.html')
!pytest --bigdata {regtest} -k 'test_nirspec' -v --ignore={associations} --ignore={datamodels} --ignore={stpipe} --html={outdir} --self-contained-html
with open(os.path.join(tmpdir, "regtest_report.html")) as report_file:
html_report = "".join(report_file.readlines())
Testing JWST Pipeline 1.7.2 ============================= test session starts ============================== platform linux -- Python 3.9.13, pytest-7.1.3, pluggy-1.0.0 -- /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/bin/python cachedir: .pytest_cache metadata: {'Python': '3.9.13', 'Platform': 'Linux-3.10.0-1160.76.1.el7.x86_64-x86_64-with-glibc2.17', 'Packages': {'pytest': '7.1.3', 'py': '1.11.0', 'pluggy': '1.0.0'}, 'Plugins': {'requests-mock': '1.10.0', 'asdf': '2.13.0', 'openfiles': '0.5.0', 'forked': '1.4.0', 'doctestplus': '0.12.0', 'cov': '3.0.0', 'xdist': '2.5.0', 'ci-watson': '0.6.1', 'jwst': '1.7.2', 'metadata': '2.0.2', 'html': '3.1.1'}, 'BUILD_NUMBER': '124', 'BUILD_ID': '124', 'BUILD_URL': 'https://plwishmaster.stsci.edu:8081/job/Notebooks/job/jwst_validation_notebooks_spacetelescope/124/', 'NODE_NAME': 'pljwvalnb.stsci.edu', 'JOB_NAME': 'Notebooks/jwst_validation_notebooks_spacetelescope', 'BUILD_TAG': 'jenkins-Notebooks-jwst_validation_notebooks_spacetelescope-124', 'EXECUTOR_NUMBER': '19', 'JENKINS_URL': 'https://plwishmaster.stsci.edu:8081/', 'WORKSPACE': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope', 'GIT_COMMIT': 'bde8f02589041fbfae28bb9206e1fbb30578e7dc', 'GIT_URL': 'https://github.com/spacetelescope/jwst_validation_notebooks', 'GIT_BRANCH': 'origin/master'} rootdir: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope plugins: requests-mock-1.10.0, asdf-2.13.0, openfiles-0.5.0, forked-1.4.0, doctestplus-0.12.0, cov-3.0.0, xdist-2.5.0, ci-watson-0.6.1, jwst-1.7.2, metadata-2.0.2, html-3.1.1 collected 581 items / 408 deselected / 173 selected ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_brightobj.py::test_nirspec_brightobj_spec2[assign_wcs] PASSED [ 0%] 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<_pytest.logging.LogCaptureFixture object at 0x7f38523bae80> @pytest.mark.bigdata def test_nirspec_nrs2_nodata_strun(_jail, rtdata, fitsdiff_default_kwargs, caplog): """ Test of calwebb_spec2 pipeline performed on NIRSpec IFU exposure that has a filter/grating combination that produces no data on the NRS2 detector. Pipeline should return with non-zero exit status. """ # Get the input file rtdata.get_data('nirspec/ifu/jw84700006001_02101_00001_nrs2_rate.fits') # Call the Spec2Pipeline cmd = [ 'strun', 'jwst.pipeline.Spec2Pipeline', rtdata.input] > status = subprocess.run(cmd) /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_exceptions.py:104: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/subprocess.py:505: in run with Popen(*popenargs, **kwargs) as process: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/subprocess.py:951: in __init__ self._execute_child(args, executable, preexec_fn, close_fds, _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <Popen: returncode: 255 args: ['strun', 'jwst.pipeline.Spec2Pipeline', '/int...> args = ['strun', 'jwst.pipeline.Spec2Pipeline', '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_nrs2_nodata_strun0/jw84700006001_02101_00001_nrs2_rate.fits'] executable = b'strun', preexec_fn = None, close_fds = True, pass_fds = () cwd = None, env = None, startupinfo = None, creationflags = 0, shell = False p2cread = -1, p2cwrite = -1, c2pread = -1, c2pwrite = -1, errread = -1 errwrite = -1, restore_signals = True, gid = None, gids = None, uid = None umask = -1, start_new_session = False def _execute_child(self, args, executable, preexec_fn, close_fds, pass_fds, cwd, env, startupinfo, creationflags, shell, p2cread, p2cwrite, c2pread, c2pwrite, errread, errwrite, restore_signals, gid, gids, uid, umask, start_new_session): """Execute program (POSIX version)""" if isinstance(args, (str, bytes)): args = [args] elif isinstance(args, os.PathLike): if shell: raise TypeError('path-like args is not allowed when ' 'shell is true') args = [args] else: args = list(args) if shell: # On Android the default shell is at '/system/bin/sh'. unix_shell = ('/system/bin/sh' if hasattr(sys, 'getandroidapilevel') else '/bin/sh') args = [unix_shell, "-c"] + args if executable: args[0] = executable if executable is None: executable = args[0] sys.audit("subprocess.Popen", executable, args, cwd, env) if (_USE_POSIX_SPAWN and os.path.dirname(executable) and preexec_fn is None and not close_fds and not pass_fds and cwd is None and (p2cread == -1 or p2cread > 2) and (c2pwrite == -1 or c2pwrite > 2) and (errwrite == -1 or errwrite > 2) and not start_new_session and gid is None and gids is None and uid is None and umask < 0): self._posix_spawn(args, executable, env, restore_signals, p2cread, p2cwrite, c2pread, c2pwrite, errread, errwrite) return orig_executable = executable # For transferring possible exec failure from child to parent. # Data format: "exception name:hex errno:description" # Pickle is not used; it is complex and involves memory allocation. errpipe_read, errpipe_write = os.pipe() # errpipe_write must not be in the standard io 0, 1, or 2 fd range. low_fds_to_close = [] while errpipe_write < 3: low_fds_to_close.append(errpipe_write) errpipe_write = os.dup(errpipe_write) for low_fd in low_fds_to_close: os.close(low_fd) try: try: # We must avoid complex work that could involve # malloc or free in the child process to avoid # potential deadlocks, thus we do all this here. # and pass it to fork_exec() if env is not None: env_list = [] for k, v in env.items(): k = os.fsencode(k) if b'=' in k: raise ValueError("illegal environment variable name") env_list.append(k + b'=' + os.fsencode(v)) else: env_list = None # Use execv instead of execve. executable = os.fsencode(executable) if os.path.dirname(executable): executable_list = (executable,) else: # This matches the behavior of os._execvpe(). executable_list = tuple( os.path.join(os.fsencode(dir), executable) for dir in os.get_exec_path(env)) fds_to_keep = set(pass_fds) fds_to_keep.add(errpipe_write) self.pid = _posixsubprocess.fork_exec( args, executable_list, close_fds, tuple(sorted(map(int, fds_to_keep))), cwd, env_list, p2cread, p2cwrite, c2pread, c2pwrite, errread, errwrite, errpipe_read, errpipe_write, restore_signals, start_new_session, gid, gids, uid, umask, preexec_fn) self._child_created = True finally: # be sure the FD is closed no matter what os.close(errpipe_write) self._close_pipe_fds(p2cread, p2cwrite, c2pread, c2pwrite, errread, errwrite) # Wait for exec to fail or succeed; possibly raising an # exception (limited in size) errpipe_data = bytearray() while True: part = os.read(errpipe_read, 50000) errpipe_data += part if not part or len(errpipe_data) > 50000: break finally: # be sure the FD is closed no matter what os.close(errpipe_read) if errpipe_data: try: pid, sts = os.waitpid(self.pid, 0) if pid == self.pid: self._handle_exitstatus(sts) else: self.returncode = sys.maxsize except ChildProcessError: pass try: exception_name, hex_errno, err_msg = ( errpipe_data.split(b':', 2)) # The encoding here should match the encoding # written in by the subprocess implementations # like _posixsubprocess err_msg = err_msg.decode() except ValueError: exception_name = b'SubprocessError' hex_errno = b'0' err_msg = 'Bad exception data from child: {!r}'.format( bytes(errpipe_data)) child_exception_type = getattr( builtins, exception_name.decode('ascii'), SubprocessError) if issubclass(child_exception_type, OSError) and hex_errno: errno_num = int(hex_errno, 16) child_exec_never_called = (err_msg == "noexec") if child_exec_never_called: err_msg = "" # The error must be from chdir(cwd). err_filename = cwd else: err_filename = orig_executable if errno_num != 0: err_msg = os.strerror(errno_num) > raise child_exception_type(errno_num, err_msg, err_filename) E FileNotFoundError: [Errno 2] No such file or directory: 'strun' /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/subprocess.py:1821: FileNotFoundError _____________________ test_nirspec_fs_spec2[fullframe-s2d] _____________________ run_pipeline = {'input': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pyt...s1_s2d.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_s2d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 's2d' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 5.1 E a: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw00023001001_01101_00001_nrs1_s2d.fits E b: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jw00023001001_01101_00001_nrs1_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Headers have different number of cards: E a: 78 E b: 76 E Extra keyword 'SHUTSTA' in a: '' E Extra keyword 'SLITID' in a: 0 E E Extension HDU 8 (SCI, 2): E E Headers contain differences: E Headers have different number of cards: E a: 76 E b: 74 E Extra keyword 'SHUTSTA' in a: '' E Extra keyword 'SLITID' in a: 0 E E Extension HDU 15 (SCI, 3): E E Headers contain differences: E Headers have different number of cards: E a: 76 E b: 74 E Extra keyword 'SHUTSTA' in a: '' E Extra keyword 'SLITID' in a: 0 E E Extension HDU 22 (SCI, 4): E E Headers contain differences: E Headers have different number of cards: E a: 76 E b: 74 E Extra keyword 'SHUTSTA' in a: '' E Extra keyword 'SLITID' in a: 0 E E Extension HDU 29 (SCI, 5): E E Headers contain differences: E Headers have different number of cards: E a: 76 E b: 74 E Extra keyword 'SHUTSTA' in a: '' E Extra keyword 'SLITID' in a: 0 E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f384cd0f550>.identical /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:66: AssertionError __________________ test_nirspec_fs_spec2[S400A1-subarray-s2d] __________________ run_pipeline = {'input': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pyt...s2_s2d.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_s2d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 's2d' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 5.1 E a: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw93045010001_02101_00001_nrs2_s2d.fits E b: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jw93045010001_02101_00001_nrs2_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Headers have different number of cards: E a: 55 E b: 53 E Extra keyword 'SHUTSTA' in a: '' E Extra keyword 'SLITID' in a: 0 E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f384d7a96d0>.identical /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:66: AssertionError _________________ test_nirspec_fs_spec2[ALLSLITS-subarray-s2d] _________________ run_pipeline = {'input': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pyt...s1_s2d.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_s2d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 's2d' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 5.1 E a: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jwtest1013001_01101_00001_nrs1_s2d.fits E b: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jwtest1013001_01101_00001_nrs1_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Headers have different number of cards: E a: 78 E b: 76 E Extra keyword 'SHUTSTA' in a: '' E Extra keyword 'SLITID' in a: 0 E E Extension HDU 8 (SCI, 2): E E Headers contain differences: E Headers have different number of cards: E a: 76 E b: 74 E Extra keyword 'SHUTSTA' in a: '' E Extra keyword 'SLITID' in a: 0 E E Extension HDU 15 (SCI, 3): E E Headers contain differences: E Headers have different number of cards: E a: 76 E b: 74 E Extra keyword 'SHUTSTA' in a: '' E Extra keyword 'SLITID' in a: 0 E E Extension HDU 22 (SCI, 4): E E Headers contain differences: E Headers have different number of cards: E a: 76 E b: 74 E Extra keyword 'SHUTSTA' in a: '' E Extra keyword 'SLITID' in a: 0 E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f3851f12400>.identical /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:66: AssertionError __________________________ test_nirspec_fs_spec3[s2d] __________________________ run_pipeline = None rtdata_module = {'input': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pyt...h_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec3/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_s2d.fits'} fitsdiff_default_kwargs = {'atol': 0.0002, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 's2d' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) def test_nirspec_fs_spec3(run_pipeline, rtdata_module, fitsdiff_default_kwargs, suffix): """Test spec3 pipeline on a set of NIRSpec FS exposures.""" rtdata = rtdata_module output = f"jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_fs_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-2 fitsdiff_default_kwargs["atol"] = 2e-4 # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 5.1 E a: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_s2d.fits E b: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0/truth/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.01, Absolute tolerance: 0.0002 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Headers have different number of cards: E a: 52 E b: 50 E Extra keyword 'SHUTSTA' in a: '' E Extra keyword 'SLITID' in a: 0 E Keyword SLTSIZE1 has different values: E a> 2048 E b> 1296 E Keyword SLTSTRT1 has different values: E a> 1 E b> 753 E Keyword SLTSTRT2 has different values: E a> 6 E b> 8 E E Extension HDU 8 (HDRTAB, 1): E E Headers contain differences: E Headers have different number of cards: E a: 816 E b: 820 E Extra keyword 'TTYPE404' in b: 'DEC_REF' E Extra keyword 'TTYPE405' in b: 'ROLL_REF' E Keyword TFIELDS has different values: E a> 403 E b> 405 E Keyword TTYPE263 has different values: E a> R_GAIN E b> R_FRIFRQ E Keyword TTYPE264 has different values: E a> R_IFUFOR E b> R_GAIN E Keyword TTYPE265 has different values: E a> R_IFUPOS E ? ^ ^ E b> R_IFUFOR E ? ^ ^ E Keyword TTYPE266 has different values: E a> R_IFUSLI E ? -- E b> R_IFUPOS E ? ++ E Keyword TTYPE267 has different values: E a> R_IPC E b> R_IFUSLI E Keyword TTYPE268 has different values: E a> R_LASTFR E b> R_IPC E Keyword TTYPE269 has different values: E a> R_LINEAR E b> R_LASTFR E Keyword TTYPE270 has different values: E a> R_MASK E b> R_LINEAR E Keyword TTYPE271 has different values: E a> R_MSA E b> R_MASK E Keyword TTYPE272 has different values: E a> R_OTE E b> R_MSA E Keyword TTYPE273 has different values: E a> R_PTHLOS E b> R_OTE E Keyword TTYPE274 has different values: E a> R_PERSAT E b> R_PTHLOS E Keyword TTYPE275 has different values: E a> R_PHOTOM E b> R_PERSAT E Keyword TTYPE276 has different values: E a> R_PSFMAS E b> R_PHOTOM E Keyword TTYPE277 has different values: E a> R_READNO E b> R_PSFMAS E Keyword TTYPE278 has different values: E a> R_REFPIX E b> R_READNO E Keyword TTYPE279 has different values: E a> R_REGION E b> R_REFPIX E Keyword TTYPE280 has different values: E a> R_RESAMP E b> R_REGION E Keyword TTYPE281 has different values: E a> R_RESOL E b> R_RESAMP E Keyword TTYPE282 has different values: E a> R_RESET E b> R_RESOL E Keyword TTYPE283 has different values: E a> R_RSCD E b> R_RESET E Keyword TTYPE284 has different values: E a> R_SATURA E b> R_RSCD E Keyword TTYPE285 has different values: E a> R_SPKERN E b> R_SATURA E Keyword TTYPE286 has different values: E a> R_SPPROF E b> R_SPKERN E Keyword TTYPE287 has different values: E a> R_SPTRAC E b> R_SPPROF E Keyword TTYPE288 has different values: E a> R_SPCWCS E b> R_SPTRAC E Keyword TTYPE289 has different values: E a> R_STRAY E b> R_SPCWCS E Keyword TTYPE290 has different values: E a> R_SUPERB E b> R_STRAY E Keyword TTYPE291 has different values: E a> R_THRPUT E b> R_SUPERB E Keyword TTYPE292 has different values: E a> R_TRPDEN E b> R_THRPUT E Keyword TTYPE293 has different values: E a> R_TRPPAR E b> R_TRPDEN E Keyword TTYPE294 has different values: E a> R_TSPHOT E b> R_TRPPAR E Keyword TTYPE295 has different values: E a> R_V2V3 E b> R_TSPHOT E Keyword TTYPE296 has different values: E a> R_WAVCOR E b> R_V2V3 E Keyword TTYPE297 has different values: E a> R_WAVRAN E ? -- E b> R_WAVCOR E ? ++ E Keyword TTYPE298 has different values: E a> R_WAVMAP E ? ^ ^ E b> R_WAVRAN E ? ^ ^ E Keyword TTYPE299 has different values: E a> S_PSFALI E b> R_WAVMAP E Keyword TTYPE300 has different values: E a> S_AMIANA E b> S_PSFALI E Keyword TTYPE301 has different values: E a> S_AMIAVG E ? ^^ E b> S_AMIANA E ? ^^ E Keyword TTYPE302 has different values: E a> S_AMINOR E b> S_AMIAVG E Keyword TTYPE303 has different values: E a> S_WCS E b> S_AMINOR E Keyword TTYPE304 has different values: E a> S_MTWCS E ? -- E b> S_WCS E Keyword TTYPE305 has different values: E a> S_BKDSUB E b> S_MTWCS E Keyword TTYPE306 has different values: E a> S_BARSHA E b> S_BKDSUB E Keyword TTYPE307 has different values: E a> S_COMB1D E b> S_BARSHA E Keyword TTYPE308 has different values: E a> S_IFUCUB E b> S_COMB1D E Keyword TTYPE309 has different values: E a> S_DARK E b> S_IFUCUB E Keyword TTYPE310 has different values: E a> S_DQINIT E b> S_DARK E Keyword TTYPE311 has different values: E a> S_TELEMI E b> S_DQINIT E Keyword TTYPE312 has different values: E a> S_ERRINI E b> S_TELEMI E Keyword TTYPE313 has different values: E a> S_EXTR1D E b> S_ERRINI E Keyword TTYPE314 has different values: E a> S_EXTR2D E ? ^ E b> S_EXTR1D E ? ^ E Keyword TTYPE315 has different values: E a> S_FRSTFR E b> S_EXTR2D E Keyword TTYPE316 has different values: E a> S_FLAT E b> S_FRSTFR E Keyword TTYPE317 has different values: E a> S_FRINGE E b> S_FLAT E Keyword TTYPE318 has different values: E a> S_GANSCL E b> S_FRINGE E Keyword TTYPE319 has different values: E a> S_GRPSCL E ? ^^ E b> S_GANSCL E ? ^^ E Keyword TTYPE320 has different values: E a> S_GUICDS E b> S_GRPSCL E Keyword TTYPE321 has different values: E a> S_IMPRNT E b> S_GUICDS E Keyword TTYPE322 has different values: E a> S_IPC E b> S_IMPRNT E Keyword TTYPE323 has different values: E a> S_JUMP E b> S_IPC E Keyword TTYPE324 has different values: E a> S_KLIP E b> S_JUMP E Keyword TTYPE325 has different values: E a> S_LASTFR E b> S_KLIP E Keyword TTYPE326 has different values: E a> S_LINEAR E b> S_LASTFR E Keyword TTYPE327 has different values: E a> S_MSBSUB E b> S_LINEAR E Keyword TTYPE328 has different values: E a> S_MRSMAT E b> S_MSBSUB E Keyword TTYPE329 has different values: E a> S_MSAFLG E b> S_MRSMAT E Keyword TTYPE330 has different values: E a> S_OUTLIR E b> S_MSAFLG E Keyword TTYPE331 has different values: E a> S_PTHLOS E b> S_OUTLIR E Keyword TTYPE332 has different values: E a> S_PERSIS E b> S_PTHLOS E Keyword TTYPE333 has different values: E a> S_PHOTOM E b> S_PERSIS E Keyword TTYPE334 has different values: E a> S_RAMP E b> S_PHOTOM E Keyword TTYPE335 has different values: E a> S_REFPIX E b> S_RAMP E Keyword TTYPE336 has different values: E a> S_RESAMP E b> S_REFPIX E Keyword TTYPE337 has different values: E a> S_RESET E b> S_RESAMP E Keyword TTYPE338 has different values: E a> S_RSCD E b> S_RESFRI E Keyword TTYPE339 has different values: E a> S_SATURA E b> S_RESET E Keyword TTYPE340 has different values: E a> S_SKYMAT E b> S_RSCD E Keyword TTYPE341 has different values: E a> S_SRCCAT E b> S_SATURA E Keyword TTYPE342 has different values: E a> S_SRCTYP E b> S_SKYMAT E Keyword TTYPE343 has different values: E a> S_PSFSTK E b> S_SRCCAT E Keyword TTYPE344 has different values: E a> S_STRAY E b> S_SRCTYP E Keyword TTYPE345 has different values: E a> S_SUPERB E b> S_PSFSTK E Keyword TTYPE346 has different values: E a> S_TSPHOT E b> S_STRAY E Keyword TTYPE347 has different values: E a> S_TWKREG E b> S_SUPERB E Keyword TTYPE348 has different values: E a> S_WAVCOR E b> S_TSPHOT E Keyword TTYPE349 has different values: E a> S_WFSCOM E b> S_TWKREG E Keyword TTYPE350 has different values: E a> S_WHTLIT E b> S_WAVCOR E Keyword TTYPE351 has different values: E a> BKGMETH E b> S_WFSCOM E Keyword TTYPE352 has different values: E a> BKGLEVEL E b> S_WHTLIT E Keyword TTYPE353 has different values: E a> BKGSUB E b> BKGMETH E Keyword TTYPE354 has different values: E a> BUNIT E b> BKGLEVEL E Keyword TTYPE355 has different values: E a> PHOTMJSR E b> BKGSUB E Keyword TTYPE356 has different values: E a> PHOTUJA2 E b> BUNIT E Keyword TTYPE357 has different values: E a> PIXAR_SR E b> PHOTMJSR E Keyword TTYPE358 has different values: E a> PIXAR_A2 E b> PHOTUJA2 E Keyword TTYPE359 has different values: E a> RADESYS E b> PIXAR_SR E Keyword TTYPE360 has different values: E a> RA_V1 E b> PIXAR_A2 E Keyword TTYPE361 has different values: E a> DEC_V1 E b> RADESYS E Keyword TTYPE362 has different values: E a> PA_V3 E b> RA_V1 E Keyword TTYPE363 has different values: E a> WCSAXES E b> DEC_V1 E Keyword TTYPE364 has different values: E a> CRPIX1 E b> PA_V3 E Keyword TTYPE365 has different values: E a> CRPIX2 E b> WCSAXES E Keyword TTYPE366 has different values: E a> CRPIX3 E ? ^ E b> CRPIX1 E ? ^ E Keyword TTYPE367 has different values: E a> CRVAL1 E b> CRPIX2 E Keyword TTYPE368 has different values: E a> CRVAL2 E b> CRPIX3 E Keyword TTYPE369 has different values: E a> CRVAL3 E ? ^ E b> CRVAL1 E ? ^ E Keyword TTYPE370 has different values: E a> CTYPE1 E b> CRVAL2 E Keyword TTYPE371 has different values: E a> CTYPE2 E b> CRVAL3 E Keyword TTYPE372 has different values: E a> CTYPE3 E ? ^ E b> CTYPE1 E ? ^ E Keyword TTYPE373 has different values: E a> CUNIT1 E b> CTYPE2 E Keyword TTYPE374 has different values: E a> CUNIT2 E b> CTYPE3 E Keyword TTYPE375 has different values: E a> CUNIT3 E ? ^ E b> CUNIT1 E ? ^ E Keyword TTYPE376 has different values: E a> CDELT1 E b> CUNIT2 E Keyword TTYPE377 has different values: E a> CDELT2 E b> CUNIT3 E Keyword TTYPE378 has different values: E a> CDELT3 E ? ^ E b> CDELT1 E ? ^ E Keyword TTYPE379 has different values: E a> PC1_1 E b> CDELT2 E Keyword TTYPE380 has different values: E a> PC1_2 E b> CDELT3 E Keyword TTYPE381 has different values: E a> PC1_3 E ? ^ E b> PC1_1 E ? ^ E Keyword TTYPE382 has different values: E a> PC2_1 E b> PC1_2 E Keyword TTYPE383 has different values: E a> PC2_2 E b> PC1_3 E Keyword TTYPE384 has different values: E a> PC2_3 E ? ^ E b> PC2_1 E ? ^ E Keyword TTYPE385 has different values: E a> PC3_1 E b> PC2_2 E Keyword TTYPE386 has different values: E a> PC3_2 E b> PC2_3 E Keyword TTYPE387 has different values: E a> PC3_3 E ? ^ E b> PC3_1 E ? ^ E Keyword TTYPE388 has different values: E a> CD1_1 E b> PC3_2 E Keyword TTYPE389 has different values: E a> CD1_2 E b> PC3_3 E Keyword TTYPE390 has different values: E a> CD2_1 E ? ^ E b> CD1_1 E ? ^ E Keyword TTYPE391 has different values: E a> CD2_2 E ? ^ E b> CD1_2 E ? ^ E Keyword TTYPE392 has different values: E a> S_REGION E b> CD2_1 E Keyword TTYPE393 has different values: E a> WAVSTART E b> CD2_2 E Keyword TTYPE394 has different values: E a> WAVEND E b> S_REGION E Keyword TTYPE395 has different values: E a> DISPAXIS E b> WAVSTART E Keyword TTYPE396 has different values: E a> SPORDER E b> WAVEND E Keyword TTYPE397 has different values: E a> V2_REF E b> DISPAXIS E Keyword TTYPE398 has different values: E a> V3_REF E b> SPORDER E Keyword TTYPE399 has different values: E a> VPARITY E b> V2_REF E Keyword TTYPE400 has different values: E a> V3I_YANG E b> V3_REF E Keyword TTYPE401 has different values: E a> RA_REF E b> VPARITY E Keyword TTYPE402 has different values: E a> DEC_REF E b> V3I_YANG E Keyword TTYPE403 has different values: E a> ROLL_REF E b> RA_REF E E Data contains differences: E Tables have different number of columns: E a: 403 E b: 405 E Extra column R_FRIFRQ of format D in b E Extra column S_RESFRI of format D in b E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f3840c0bca0>.identical /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec3.py:42: AssertionError __________________________ test_nirspec_fs_spec3[x1d] __________________________ run_pipeline = None rtdata_module = {'input': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pyt...h_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec3/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_x1d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'x1d' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) def test_nirspec_fs_spec3(run_pipeline, rtdata_module, fitsdiff_default_kwargs, suffix): """Test spec3 pipeline on a set of NIRSpec FS exposures.""" rtdata = rtdata_module output = f"jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_fs_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-2 fitsdiff_default_kwargs["atol"] = 2e-4 # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 5.1 E a: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_x1d.fits E b: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0/truth/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_x1d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (EXTRACT1D, 1): E E Data contains differences: E Column FLUX data differs in row 1166: E a> 9316327.293526385 E b> 9316228.895659095 E 1 different table data element(s) found (0.00% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f384090f430>.identical /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec3.py:42: AssertionError _________________________________ test_photom __________________________________ self = <astropy.io.fits.diff.FITSDiff object at 0x7f381d712e80> a = '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0/jwdata0010010_11010_0001_NRS1_photom.fits' b = '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0/truth/jwdata0010010_11010_0001_NRS1_photom.fits' ignore_hdus = ['ASDF'] ignore_keywords = ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...] ignore_comments = [] ignore_fields = ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...] numdiffs = 10, rtol = 1e-05, atol = 1e-07, ignore_blanks = True ignore_blank_cards = True def __init__(self, a, b, ignore_hdus=[], ignore_keywords=[], ignore_comments=[], ignore_fields=[], numdiffs=10, rtol=0.0, atol=0.0, ignore_blanks=True, ignore_blank_cards=True): """ Parameters ---------- a : str or `HDUList` The filename of a FITS file on disk, or an `HDUList` object. b : str or `HDUList` The filename of a FITS file on disk, or an `HDUList` object to compare to the first file. ignore_hdus : sequence, optional HDU names to ignore when comparing two FITS files or HDU lists; the presence of these HDUs and their contents are ignored. Wildcard strings may also be included in the list. ignore_keywords : sequence, optional Header keywords to ignore when comparing two headers; the presence of these keywords and their values are ignored. Wildcard strings may also be included in the list. ignore_comments : sequence, optional A list of header keywords whose comments should be ignored in the comparison. May contain wildcard strings as with ignore_keywords. ignore_fields : sequence, optional The (case-insensitive) names of any table columns to ignore if any table data is to be compared. numdiffs : int, optional The number of pixel/table values to output when reporting HDU data differences. Though the count of differences is the same either way, this allows controlling the number of different values that are kept in memory or output. If a negative value is given, then numdiffs is treated as unlimited (default: 10). rtol : float, optional The relative difference to allow when comparing two float values either in header values, image arrays, or table columns (default: 0.0). Values which satisfy the expression .. math:: \\left| a - b \\right| > \\text{atol} + \\text{rtol} \\cdot \\left| b \\right| are considered to be different. The underlying function used for comparison is `numpy.allclose`. .. versionadded:: 2.0 atol : float, optional The allowed absolute difference. See also ``rtol`` parameter. .. versionadded:: 2.0 ignore_blanks : bool, optional Ignore extra whitespace at the end of string values either in headers or data. Extra leading whitespace is not ignored (default: True). ignore_blank_cards : bool, optional Ignore all cards that are blank, i.e. they only contain whitespace (default: True). """ if isinstance(a, (str, os.PathLike)): try: > a = fitsopen(a) /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/io/fits/diff.py:269: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ name = '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0/jwdata0010010_11010_0001_NRS1_photom.fits' mode = 'readonly', memmap = False, save_backup = False, cache = True lazy_load_hdus = True, ignore_missing_simple = False, kwargs = {'uint': True} conf = <astropy.io.fits.Conf object at 0x7f387acc38b0> def fitsopen(name, mode='readonly', memmap=None, save_backup=False, cache=True, lazy_load_hdus=None, ignore_missing_simple=False, **kwargs): """Factory function to open a FITS file and return an `HDUList` object. Parameters ---------- name : str, file-like or `pathlib.Path` File to be opened. mode : str, optional Open mode, 'readonly', 'update', 'append', 'denywrite', or 'ostream'. Default is 'readonly'. If ``name`` is a file object that is already opened, ``mode`` must match the mode the file was opened with, readonly (rb), update (rb+), append (ab+), ostream (w), denywrite (rb)). memmap : bool, optional Is memory mapping to be used? This value is obtained from the configuration item ``astropy.io.fits.Conf.use_memmap``. Default is `True`. save_backup : bool, optional If the file was opened in update or append mode, this ensures that a backup of the original file is saved before any changes are flushed. The backup has the same name as the original file with ".bak" appended. If "file.bak" already exists then "file.bak.1" is used, and so on. Default is `False`. cache : bool, optional If the file name is a URL, `~astropy.utils.data.download_file` is used to open the file. This specifies whether or not to save the file locally in Astropy's download cache. Default is `True`. lazy_load_hdus : bool, optional To avoid reading all the HDUs and headers in a FITS file immediately upon opening. This is an optimization especially useful for large files, as FITS has no way of determining the number and offsets of all the HDUs in a file without scanning through the file and reading all the headers. Default is `True`. To disable lazy loading and read all HDUs immediately (the old behavior) use ``lazy_load_hdus=False``. This can lead to fewer surprises--for example with lazy loading enabled, ``len(hdul)`` can be slow, as it means the entire FITS file needs to be read in order to determine the number of HDUs. ``lazy_load_hdus=False`` ensures that all HDUs have already been loaded after the file has been opened. .. versionadded:: 1.3 uint : bool, optional Interpret signed integer data where ``BZERO`` is the central value and ``BSCALE == 1`` as unsigned integer data. For example, ``int16`` data with ``BZERO = 32768`` and ``BSCALE = 1`` would be treated as ``uint16`` data. Default is `True` so that the pseudo-unsigned integer convention is assumed. ignore_missing_end : bool, optional Do not raise an exception when opening a file that is missing an ``END`` card in the last header. Default is `False`. ignore_missing_simple : bool, optional Do not raise an exception when the SIMPLE keyword is missing. Note that io.fits will raise a warning if a SIMPLE card is present but written in a way that does not follow the FITS Standard. Default is `False`. .. versionadded:: 4.2 checksum : bool, str, optional If `True`, verifies that both ``DATASUM`` and ``CHECKSUM`` card values (when present in the HDU header) match the header and data of all HDU's in the file. Updates to a file that already has a checksum will preserve and update the existing checksums unless this argument is given a value of 'remove', in which case the CHECKSUM and DATASUM values are not checked, and are removed when saving changes to the file. Default is `False`. disable_image_compression : bool, optional If `True`, treats compressed image HDU's like normal binary table HDU's. Default is `False`. do_not_scale_image_data : bool, optional If `True`, image data is not scaled using BSCALE/BZERO values when read. Default is `False`. character_as_bytes : bool, optional Whether to return bytes for string columns, otherwise unicode strings are returned, but this does not respect memory mapping and loads the whole column in memory when accessed. Default is `False`. ignore_blank : bool, optional If `True`, the BLANK keyword is ignored if present. Default is `False`. scale_back : bool, optional If `True`, when saving changes to a file that contained scaled image data, restore the data to the original type and reapply the original BSCALE/BZERO values. This could lead to loss of accuracy if scaling back to integer values after performing floating point operations on the data. Default is `False`. output_verify : str Output verification option. Must be one of ``"fix"``, ``"silentfix"``, ``"ignore"``, ``"warn"``, or ``"exception"``. May also be any combination of ``"fix"`` or ``"silentfix"`` with ``"+ignore"``, ``+warn``, or ``+exception" (e.g. ``"fix+warn"``). See :ref:`astropy:verify` for more info. Returns ------- hdulist : `HDUList` `HDUList` containing all of the header data units in the file. """ from astropy.io.fits import conf if memmap is None: # distinguish between True (kwarg explicitly set) # and None (preference for memmap in config, might be ignored) memmap = None if conf.use_memmap else False else: memmap = bool(memmap) if lazy_load_hdus is None: lazy_load_hdus = conf.lazy_load_hdus else: lazy_load_hdus = bool(lazy_load_hdus) if 'uint' not in kwargs: kwargs['uint'] = conf.enable_uint if not name: raise ValueError(f'Empty filename: {name!r}') > return HDUList.fromfile(name, mode, memmap, save_backup, cache, lazy_load_hdus, ignore_missing_simple, **kwargs) /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/io/fits/hdu/hdulist.py:175: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ cls = <class 'astropy.io.fits.hdu.hdulist.HDUList'> fileobj = '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0/jwdata0010010_11010_0001_NRS1_photom.fits' mode = 'readonly', memmap = False, save_backup = False, cache = True lazy_load_hdus = True, ignore_missing_simple = False, kwargs = {'uint': True} @classmethod def fromfile(cls, fileobj, mode=None, memmap=None, save_backup=False, cache=True, lazy_load_hdus=True, ignore_missing_simple=False, **kwargs): """ Creates an `HDUList` instance from a file-like object. The actual implementation of ``fitsopen()``, and generally shouldn't be used directly. Use :func:`open` instead (and see its documentation for details of the parameters accepted by this method). """ > return cls._readfrom(fileobj=fileobj, mode=mode, memmap=memmap, save_backup=save_backup, cache=cache, ignore_missing_simple=ignore_missing_simple, lazy_load_hdus=lazy_load_hdus, **kwargs) /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/io/fits/hdu/hdulist.py:410: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ cls = <class 'astropy.io.fits.hdu.hdulist.HDUList'> fileobj = '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0/jwdata0010010_11010_0001_NRS1_photom.fits' data = None, mode = 'readonly', memmap = False, cache = True lazy_load_hdus = True, ignore_missing_simple = False kwargs = {'save_backup': False, 'uint': True} @classmethod def _readfrom(cls, fileobj=None, data=None, mode=None, memmap=None, cache=True, lazy_load_hdus=True, ignore_missing_simple=False, **kwargs): """ Provides the implementations from HDUList.fromfile and HDUList.fromstring, both of which wrap this method, as their implementations are largely the same. """ if fileobj is not None: if not isinstance(fileobj, _File): # instantiate a FITS file object (ffo) > fileobj = _File(fileobj, mode=mode, memmap=memmap, cache=cache) /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/io/fits/hdu/hdulist.py:1060: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <astropy.io.fits.file._File None> fileobj = '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0/jwdata0010010_11010_0001_NRS1_photom.fits' mode = 'readonly', memmap = False, overwrite = False, cache = True def __init__(self, fileobj=None, mode=None, memmap=None, overwrite=False, cache=True): self.strict_memmap = bool(memmap) memmap = True if memmap is None else memmap self._file = None self.closed = False self.binary = True self.mode = mode self.memmap = memmap self.compression = None self.readonly = False self.writeonly = False # Should the object be closed on error: see # https://github.com/astropy/astropy/issues/6168 self.close_on_error = False # Holds mmap instance for files that use mmap self._mmap = None if fileobj is None: self.simulateonly = True return else: self.simulateonly = False if isinstance(fileobj, os.PathLike): fileobj = os.fspath(fileobj) if mode is not None and mode not in IO_FITS_MODES: raise ValueError(f"Mode '{mode}' not recognized") if isfile(fileobj): objmode = _normalize_fits_mode(fileobj_mode(fileobj)) if mode is not None and mode != objmode: raise ValueError( "Requested FITS mode '{}' not compatible with open file " "handle mode '{}'".format(mode, objmode)) mode = objmode if mode is None: mode = 'readonly' # Handle raw URLs if (isinstance(fileobj, (str, bytes)) and mode not in ('ostream', 'append', 'update') and _is_url(fileobj)): self.name = download_file(fileobj, cache=cache) # Handle responses from URL requests that have already been opened elif isinstance(fileobj, http.client.HTTPResponse): if mode in ('ostream', 'append', 'update'): raise ValueError( f"Mode {mode} not supported for HTTPResponse") fileobj = io.BytesIO(fileobj.read()) else: self.name = fileobj_name(fileobj) self.mode = mode # Underlying fileobj is a file-like object, but an actual file object self.file_like = False # Initialize the internal self._file object if isfile(fileobj): self._open_fileobj(fileobj, mode, overwrite) elif isinstance(fileobj, (str, bytes)): > self._open_filename(fileobj, mode, overwrite) /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/io/fits/file.py:170: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <astropy.io.fits.file._File None> filename = '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0/jwdata0010010_11010_0001_NRS1_photom.fits' mode = 'readonly', overwrite = False def _open_filename(self, filename, mode, overwrite): """Open a FITS file from a filename string.""" if mode == 'ostream': self._overwrite_existing(overwrite, None, True) if os.path.exists(self.name): with open(self.name, 'rb') as f: magic = f.read(4) else: magic = b'' ext = os.path.splitext(self.name)[1] if not self._try_read_compressed(self.name, magic, mode, ext=ext): > self._file = open(self.name, IO_FITS_MODES[mode]) E FileNotFoundError: [Errno 2] No such file or directory: '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0/jwdata0010010_11010_0001_NRS1_photom.fits' /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/io/fits/file.py:562: FileNotFoundError During handling of the above exception, another exception occurred: run_photom = {'input': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pyt...S1_photom.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_ifu/jwdata0010010_11010_0001_NRS1_photom.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata def test_photom(run_photom, fitsdiff_default_kwargs): """Regression test matching output files""" > rt.is_like_truth(run_photom, fitsdiff_default_kwargs, 'photom', truth_path=TRUTH_PATH) /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_ifu_spec2.py:83: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <astropy.io.fits.diff.FITSDiff object at 0x7f381d712e80> a = '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0/jwdata0010010_11010_0001_NRS1_photom.fits' b = '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0/truth/jwdata0010010_11010_0001_NRS1_photom.fits' ignore_hdus = ['ASDF'] ignore_keywords = ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...] ignore_comments = [] ignore_fields = ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...] numdiffs = 10, rtol = 1e-05, atol = 1e-07, ignore_blanks = True ignore_blank_cards = True def __init__(self, a, b, ignore_hdus=[], ignore_keywords=[], ignore_comments=[], ignore_fields=[], numdiffs=10, rtol=0.0, atol=0.0, ignore_blanks=True, ignore_blank_cards=True): """ Parameters ---------- a : str or `HDUList` The filename of a FITS file on disk, or an `HDUList` object. b : str or `HDUList` The filename of a FITS file on disk, or an `HDUList` object to compare to the first file. ignore_hdus : sequence, optional HDU names to ignore when comparing two FITS files or HDU lists; the presence of these HDUs and their contents are ignored. Wildcard strings may also be included in the list. ignore_keywords : sequence, optional Header keywords to ignore when comparing two headers; the presence of these keywords and their values are ignored. Wildcard strings may also be included in the list. ignore_comments : sequence, optional A list of header keywords whose comments should be ignored in the comparison. May contain wildcard strings as with ignore_keywords. ignore_fields : sequence, optional The (case-insensitive) names of any table columns to ignore if any table data is to be compared. numdiffs : int, optional The number of pixel/table values to output when reporting HDU data differences. Though the count of differences is the same either way, this allows controlling the number of different values that are kept in memory or output. If a negative value is given, then numdiffs is treated as unlimited (default: 10). rtol : float, optional The relative difference to allow when comparing two float values either in header values, image arrays, or table columns (default: 0.0). Values which satisfy the expression .. math:: \\left| a - b \\right| > \\text{atol} + \\text{rtol} \\cdot \\left| b \\right| are considered to be different. The underlying function used for comparison is `numpy.allclose`. .. versionadded:: 2.0 atol : float, optional The allowed absolute difference. See also ``rtol`` parameter. .. versionadded:: 2.0 ignore_blanks : bool, optional Ignore extra whitespace at the end of string values either in headers or data. Extra leading whitespace is not ignored (default: True). ignore_blank_cards : bool, optional Ignore all cards that are blank, i.e. they only contain whitespace (default: True). """ if isinstance(a, (str, os.PathLike)): try: a = fitsopen(a) except Exception as exc: > raise OSError("error opening file a ({}): {}: {}".format( a, exc.__class__.__name__, exc.args[0])) E OSError: error opening file a (/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0/jwdata0010010_11010_0001_NRS1_photom.fits): FileNotFoundError: 2 /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/io/fits/diff.py:271: OSError ---------------------------- Captured stderr setup ----------------------------- 2022-10-06 04:29:38,978 - stpipe.PhotomStep - INFO - PhotomStep instance created. 2022-10-06 04:29:39,254 - stpipe.PhotomStep - INFO - Step PhotomStep running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0/jwdata0010010_11010_0001_NRS1_pathloss.fits',). 2022-10-06 04:29:39,255 - stpipe.PhotomStep - INFO - Step PhotomStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0', 'inverse': False, 'source_type': None} 2022-10-06 04:29:42,060 - stpipe.PhotomStep - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0016.fits 2022-10-06 04:29:42,060 - stpipe.PhotomStep - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0009.fits 2022-10-06 04:29:45,246 - stpipe.PhotomStep - INFO - Using instrument: NIRSPEC 2022-10-06 04:29:45,246 - stpipe.PhotomStep - INFO - detector: NRS1 2022-10-06 04:29:45,246 - stpipe.PhotomStep - INFO - exp_type: NRS_IFU 2022-10-06 04:29:45,246 - stpipe.PhotomStep - INFO - filter: F290LP 2022-10-06 04:29:45,246 - stpipe.PhotomStep - INFO - grating: G395H 2022-10-06 04:29:45,310 - stpipe.PhotomStep - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:30:59,178 - stpipe.PhotomStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:31:02,024 - stpipe.PhotomStep - INFO - Saved model in jwdata0010010_11010_0001_NRS1_photomstep.fits 2022-10-06 04:31:02,024 - stpipe.PhotomStep - INFO - Step PhotomStep done ------------------------------ Captured log setup ------------------------------ INFO stpipe.PhotomStep:step.py:366 PhotomStep instance created. INFO stpipe.PhotomStep:step.py:430 Step PhotomStep running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0/jwdata0010010_11010_0001_NRS1_pathloss.fits',). INFO stpipe.PhotomStep:step.py:434 Step PhotomStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0', 'inverse': False, 'source_type': None} DEBUG stpipe.PhotomStep:photom_step.py:35 Input is IFUImageModel INFO stpipe.PhotomStep:photom_step.py:55 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0016.fits INFO stpipe.PhotomStep:photom_step.py:56 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0009.fits INFO stpipe.PhotomStep:photom.py:144 Using instrument: NIRSPEC INFO stpipe.PhotomStep:photom.py:144 Using instrument: NIRSPEC INFO stpipe.PhotomStep:photom.py:145 detector: NRS1 INFO stpipe.PhotomStep:photom.py:145 detector: NRS1 INFO stpipe.PhotomStep:photom.py:146 exp_type: NRS_IFU INFO stpipe.PhotomStep:photom.py:146 exp_type: NRS_IFU INFO stpipe.PhotomStep:photom.py:148 filter: F290LP INFO stpipe.PhotomStep:photom.py:148 filter: F290LP INFO stpipe.PhotomStep:photom.py:152 grating: G395H INFO stpipe.PhotomStep:photom.py:152 grating: G395H DEBUG stpipe.PhotomStep:photom.py:271 Converting conversion factor from flux to surface brightness DEBUG stpipe.PhotomStep:photom.py:271 Converting conversion factor from flux to surface brightness INFO stpipe.PhotomStep:photom.py:277 PHOTMJSR value: 4.25452e+10 INFO stpipe.PhotomStep:photom.py:277 PHOTMJSR value: 4.25452e+10 DEBUG stpipe.PhotomStep:photom.py:621 Slice 0: 274 2047 781 829 DEBUG stpipe.PhotomStep:photom.py:621 Slice 0: 274 2047 781 829 DEBUG stpipe.PhotomStep:photom.py:621 Slice 1: 311 2047 1197 1247 DEBUG stpipe.PhotomStep:photom.py:621 Slice 1: 311 2047 1197 1247 DEBUG stpipe.PhotomStep:photom.py:621 Slice 2: 270 2047 731 780 DEBUG stpipe.PhotomStep:photom.py:621 Slice 2: 270 2047 731 780 DEBUG stpipe.PhotomStep:photom.py:621 Slice 3: 316 2047 1246 1296 DEBUG stpipe.PhotomStep:photom.py:621 Slice 3: 316 2047 1246 1296 DEBUG stpipe.PhotomStep:photom.py:621 Slice 4: 265 2047 682 731 DEBUG stpipe.PhotomStep:photom.py:621 Slice 4: 265 2047 682 731 DEBUG stpipe.PhotomStep:photom.py:621 Slice 5: 320 2047 1296 1345 DEBUG stpipe.PhotomStep:photom.py:621 Slice 5: 320 2047 1296 1345 DEBUG stpipe.PhotomStep:photom.py:621 Slice 6: 261 2047 633 681 DEBUG stpipe.PhotomStep:photom.py:621 Slice 6: 261 2047 633 681 DEBUG stpipe.PhotomStep:photom.py:621 Slice 7: 325 2047 1345 1394 DEBUG stpipe.PhotomStep:photom.py:621 Slice 7: 325 2047 1345 1394 DEBUG stpipe.PhotomStep:photom.py:621 Slice 8: 257 2047 584 632 DEBUG stpipe.PhotomStep:photom.py:621 Slice 8: 257 2047 584 632 DEBUG stpipe.PhotomStep:photom.py:621 Slice 9: 330 2047 1394 1443 DEBUG stpipe.PhotomStep:photom.py:621 Slice 9: 330 2047 1394 1443 DEBUG stpipe.PhotomStep:photom.py:621 Slice 10: 253 2047 534 583 DEBUG stpipe.PhotomStep:photom.py:621 Slice 10: 253 2047 534 583 DEBUG stpipe.PhotomStep:photom.py:621 Slice 11: 335 2047 1442 1492 DEBUG stpipe.PhotomStep:photom.py:621 Slice 11: 335 2047 1442 1492 DEBUG stpipe.PhotomStep:photom.py:621 Slice 12: 249 2047 485 534 DEBUG stpipe.PhotomStep:photom.py:621 Slice 12: 249 2047 485 534 DEBUG stpipe.PhotomStep:photom.py:621 Slice 13: 339 2047 1491 1541 DEBUG stpipe.PhotomStep:photom.py:621 Slice 13: 339 2047 1491 1541 DEBUG stpipe.PhotomStep:photom.py:621 Slice 14: 245 2047 436 484 DEBUG stpipe.PhotomStep:photom.py:621 Slice 14: 245 2047 436 484 DEBUG stpipe.PhotomStep:photom.py:621 Slice 15: 344 2047 1540 1590 DEBUG stpipe.PhotomStep:photom.py:621 Slice 15: 344 2047 1540 1590 DEBUG stpipe.PhotomStep:photom.py:621 Slice 16: 241 2047 387 435 DEBUG stpipe.PhotomStep:photom.py:621 Slice 16: 241 2047 387 435 DEBUG stpipe.PhotomStep:photom.py:621 Slice 17: 349 2047 1589 1639 DEBUG stpipe.PhotomStep:photom.py:621 Slice 17: 349 2047 1589 1639 DEBUG stpipe.PhotomStep:photom.py:621 Slice 18: 237 2047 337 386 DEBUG stpipe.PhotomStep:photom.py:621 Slice 18: 237 2047 337 386 DEBUG stpipe.PhotomStep:photom.py:621 Slice 19: 354 2047 1638 1688 DEBUG stpipe.PhotomStep:photom.py:621 Slice 19: 354 2047 1638 1688 DEBUG stpipe.PhotomStep:photom.py:621 Slice 20: 234 2047 288 336 DEBUG stpipe.PhotomStep:photom.py:621 Slice 20: 234 2047 288 336 DEBUG stpipe.PhotomStep:photom.py:621 Slice 21: 359 2047 1687 1737 DEBUG stpipe.PhotomStep:photom.py:621 Slice 21: 359 2047 1687 1737 DEBUG stpipe.PhotomStep:photom.py:621 Slice 22: 230 2047 238 287 DEBUG stpipe.PhotomStep:photom.py:621 Slice 22: 230 2047 238 287 DEBUG stpipe.PhotomStep:photom.py:621 Slice 23: 364 2047 1736 1786 DEBUG stpipe.PhotomStep:photom.py:621 Slice 23: 364 2047 1736 1786 DEBUG stpipe.PhotomStep:photom.py:621 Slice 24: 226 2047 189 238 DEBUG stpipe.PhotomStep:photom.py:621 Slice 24: 226 2047 189 238 DEBUG stpipe.PhotomStep:photom.py:621 Slice 25: 369 2047 1784 1835 DEBUG stpipe.PhotomStep:photom.py:621 Slice 25: 369 2047 1784 1835 DEBUG stpipe.PhotomStep:photom.py:621 Slice 26: 222 2047 140 188 DEBUG stpipe.PhotomStep:photom.py:621 Slice 26: 222 2047 140 188 DEBUG stpipe.PhotomStep:photom.py:621 Slice 27: 374 2047 1833 1884 DEBUG stpipe.PhotomStep:photom.py:621 Slice 27: 374 2047 1833 1884 DEBUG stpipe.PhotomStep:photom.py:621 Slice 28: 218 2047 90 138 DEBUG stpipe.PhotomStep:photom.py:621 Slice 28: 218 2047 90 138 DEBUG stpipe.PhotomStep:photom.py:621 Slice 29: 379 2047 1882 1932 DEBUG stpipe.PhotomStep:photom.py:621 Slice 29: 379 2047 1882 1932 INFO stpipe.PhotomStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.PhotomStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.PhotomStep:step.py:1016 Saved model in jwdata0010010_11010_0001_NRS1_photomstep.fits INFO stpipe.PhotomStep:step.py:546 Step PhotomStep done _______________________ test_nirspec_lamp_fs_spec2[s2d] ________________________ run_pipeline = {'input': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pyt..._s2d.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw84600010001_02101_00004_nrs2_s2d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 's2d' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "flat_field", "cal", "s2d", "x1d"]) def test_nirspec_lamp_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec lamp exposure in Fixed-Slit mode.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_lamp_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 5.1 E a: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0/jw84600010001_02101_00004_nrs2_s2d.fits E b: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0/truth/jw84600010001_02101_00004_nrs2_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Headers have different number of cards: E a: 52 E b: 48 E Extra keyword 'SHUTSTA' in a: '' E Extra keyword 'SLITID' in a: 0 E Extra keyword 'SRCXPOS' in a: 0.0 E Extra keyword 'SRCYPOS' in a: 0.0 E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f384cce84f0>.identical /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_lamp_fs_spec2.py:47: AssertionError _____________________ test_nirspec_ifu_mbkg_nod[on-source] _____________________ rtdata = {'input': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pyt..., 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_ifu_mbkg_nod/ifu_prism_source_on_NRS1_master_background.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} output_file = 'ifu_prism_source_on_NRS1_master_background.fits' @pytest.mark.parametrize( 'output_file', ['ifu_prism_source_on_NRS1_master_background.fits', 'ifu_prism_source_off_NRS1_o001_masterbg1d.fits', 'ifu_prism_source_on_NRS1_o001_masterbg2d.fits'], ids=["on-source", "off-source", "on-source2d"] ) def test_nirspec_ifu_mbkg_nod(rtdata, fitsdiff_default_kwargs, output_file): """Test NIRSpec IFU prism nodded data.""" # Get input data rtdata.get_asn("nirspec/ifu/nirspec_spec3_asn.json") MasterBackgroundStep.call(rtdata.input, save_background=True, save_results=True, suffix='master_background') rtdata.output = output_file # Get the truth file rtdata.get_truth(f"truth/test_nirspec_ifu_mbkg_nod/{output_file}") # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 5.1 E a: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s0/ifu_prism_source_on_NRS1_master_background.fits E b: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s0/truth/ifu_prism_source_on_NRS1_master_background.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Primary HDU: E E Headers contain differences: E Keyword ASNPOOL has different values: E a> singleton E b> jw95175_20190128T194403_pool E Keyword ASNTABLE has different values: E a> singleton E b> nirspec_spec3_asn.json E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f384d85f490>.identical /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py:178: AssertionError ----------------------------- Captured stderr call ----------------------------- 2022-10-06 04:54:38,561 - stpipe.MasterBackgroundStep - INFO - MasterBackgroundStep instance created. 2022-10-06 04:54:39,013 - stpipe.MasterBackgroundStep - INFO - Step MasterBackgroundStep running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s0/nirspec_spec3_asn.json',). 2022-10-06 04:54:39,014 - stpipe.MasterBackgroundStep - INFO - Step MasterBackgroundStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'master_background', 'search_output_file': True, 'input_dir': '', 'user_background': None, 'save_background': True, 'force_subtract': False} 2022-10-06 04:54:50,416 - stpipe.MasterBackgroundStep - INFO - Using exposure time as the weight. 2022-10-06 04:54:50,417 - stpipe.MasterBackgroundStep - WARNING - There is no WCS in the input. 2022-10-06 04:54:50,428 - stpipe.MasterBackgroundStep - INFO - Accumulating data from input spectrum 1 2022-10-06 04:56:55,202 - stpipe.MasterBackgroundStep - INFO - Applying point source pathloss updates to IFU background 2022-10-06 04:56:55,203 - stpipe.MasterBackgroundStep - WARNING - Pathloss_point array not found in input 2022-10-06 04:56:55,203 - stpipe.MasterBackgroundStep - WARNING - Skipping pathloss background updates 2022-10-06 04:57:04,596 - stpipe.MasterBackgroundStep - INFO - Saved model in ifu_prism_source_off_NRS1_o001_masterbg1d.fits 2022-10-06 04:57:12,114 - stpipe.MasterBackgroundStep - INFO - Saved model in ifu_prism_source_on_NRS1_o001_masterbg2d.fits 2022-10-06 04:57:20,219 - stpipe.MasterBackgroundStep - INFO - Saved model in ifu_prism_source_on_NRS1_master_background.fits 2022-10-06 04:57:20,219 - stpipe.MasterBackgroundStep - INFO - Step MasterBackgroundStep done ------------------------------ Captured log call ------------------------------- INFO stpipe.MasterBackgroundStep:step.py:366 MasterBackgroundStep instance created. INFO stpipe.MasterBackgroundStep:step.py:430 Step MasterBackgroundStep running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s0/nirspec_spec3_asn.json',). INFO stpipe.MasterBackgroundStep:step.py:434 Step MasterBackgroundStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'master_background', 'search_output_file': True, 'input_dir': '', 'user_background': None, 'save_background': True, 'force_subtract': False} DEBUG stpipe.MasterBackgroundStep:master_background_step.py:125 Copying BACKGROUND column to SURF_BRIGHT DEBUG stpipe.MasterBackgroundStep:combine1d.py:564 Using exptime_key = exposure_time. DEBUG stpipe.MasterBackgroundStep:combine1d.py:564 Using exptime_key = exposure_time. INFO stpipe.MasterBackgroundStep:combine1d.py:529 Using exposure time as the weight. INFO stpipe.MasterBackgroundStep:combine1d.py:529 Using exposure time as the weight. WARNING stpipe.MasterBackgroundStep:combine1d.py:89 There is no WCS in the input. WARNING stpipe.MasterBackgroundStep:combine1d.py:89 There is no WCS in the input. INFO stpipe.MasterBackgroundStep:combine1d.py:204 Accumulating data from input spectrum 1 INFO stpipe.MasterBackgroundStep:combine1d.py:204 Accumulating data from input spectrum 1 INFO stpipe.MasterBackgroundStep:nirspec_utils.py:146 Applying point source pathloss updates to IFU background INFO stpipe.MasterBackgroundStep:nirspec_utils.py:146 Applying point source pathloss updates to IFU background WARNING stpipe.MasterBackgroundStep:nirspec_utils.py:152 Pathloss_point array not found in input WARNING stpipe.MasterBackgroundStep:nirspec_utils.py:152 Pathloss_point array not found in input WARNING stpipe.MasterBackgroundStep:nirspec_utils.py:153 Skipping pathloss background updates WARNING stpipe.MasterBackgroundStep:nirspec_utils.py:153 Skipping pathloss background updates INFO stpipe.MasterBackgroundStep:step.py:1016 Saved model in ifu_prism_source_off_NRS1_o001_masterbg1d.fits INFO stpipe.MasterBackgroundStep:step.py:1016 Saved model in ifu_prism_source_on_NRS1_o001_masterbg2d.fits INFO stpipe.MasterBackgroundStep:step.py:1016 Saved model in ifu_prism_source_on_NRS1_master_background.fits INFO stpipe.MasterBackgroundStep:step.py:546 Step MasterBackgroundStep done ____________________ test_nirspec_ifu_mbkg_nod[off-source] _____________________ rtdata = {'input': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pyt...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_ifu_mbkg_nod/ifu_prism_source_off_NRS1_o001_masterbg1d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} output_file = 'ifu_prism_source_off_NRS1_o001_masterbg1d.fits' @pytest.mark.parametrize( 'output_file', ['ifu_prism_source_on_NRS1_master_background.fits', 'ifu_prism_source_off_NRS1_o001_masterbg1d.fits', 'ifu_prism_source_on_NRS1_o001_masterbg2d.fits'], ids=["on-source", "off-source", "on-source2d"] ) def test_nirspec_ifu_mbkg_nod(rtdata, fitsdiff_default_kwargs, output_file): """Test NIRSpec IFU prism nodded data.""" # Get input data rtdata.get_asn("nirspec/ifu/nirspec_spec3_asn.json") MasterBackgroundStep.call(rtdata.input, save_background=True, save_results=True, suffix='master_background') rtdata.output = output_file # Get the truth file rtdata.get_truth(f"truth/test_nirspec_ifu_mbkg_nod/{output_file}") # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 5.1 E a: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_off_0/ifu_prism_source_off_NRS1_o001_masterbg1d.fits E b: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_off_0/truth/ifu_prism_source_off_NRS1_o001_masterbg1d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Primary HDU: E E Headers contain differences: E Keyword ASNPOOL has different values: E a> singleton E b> jw95175_20190128T194403_pool E Keyword ASNTABLE has different values: E a> singleton E b> nirspec_spec3_asn.json E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f3857215760>.identical /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py:178: AssertionError ----------------------------- Captured stderr call ----------------------------- 2022-10-06 04:57:30,022 - stpipe.MasterBackgroundStep - INFO - MasterBackgroundStep instance created. 2022-10-06 04:57:30,476 - stpipe.MasterBackgroundStep - INFO - Step MasterBackgroundStep running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_off_0/nirspec_spec3_asn.json',). 2022-10-06 04:57:30,477 - stpipe.MasterBackgroundStep - INFO - Step MasterBackgroundStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'master_background', 'search_output_file': True, 'input_dir': '', 'user_background': None, 'save_background': True, 'force_subtract': False} 2022-10-06 04:57:42,426 - stpipe.MasterBackgroundStep - INFO - Using exposure time as the weight. 2022-10-06 04:57:42,427 - stpipe.MasterBackgroundStep - WARNING - There is no WCS in the input. 2022-10-06 04:57:42,438 - stpipe.MasterBackgroundStep - INFO - Accumulating data from input spectrum 1 2022-10-06 04:59:52,051 - stpipe.MasterBackgroundStep - INFO - Applying point source pathloss updates to IFU background 2022-10-06 04:59:52,051 - stpipe.MasterBackgroundStep - WARNING - Pathloss_point array not found in input 2022-10-06 04:59:52,051 - stpipe.MasterBackgroundStep - WARNING - Skipping pathloss background updates 2022-10-06 04:59:59,681 - stpipe.MasterBackgroundStep - INFO - Saved model in ifu_prism_source_off_NRS1_o001_masterbg1d.fits 2022-10-06 05:00:06,847 - stpipe.MasterBackgroundStep - INFO - Saved model in ifu_prism_source_on_NRS1_o001_masterbg2d.fits 2022-10-06 05:00:14,506 - stpipe.MasterBackgroundStep - INFO - Saved model in ifu_prism_source_on_NRS1_master_background.fits 2022-10-06 05:00:14,506 - stpipe.MasterBackgroundStep - INFO - Step MasterBackgroundStep done ------------------------------ Captured log call ------------------------------- INFO stpipe.MasterBackgroundStep:step.py:366 MasterBackgroundStep instance created. INFO stpipe.MasterBackgroundStep:step.py:430 Step MasterBackgroundStep running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_off_0/nirspec_spec3_asn.json',). INFO stpipe.MasterBackgroundStep:step.py:434 Step MasterBackgroundStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'master_background', 'search_output_file': True, 'input_dir': '', 'user_background': None, 'save_background': True, 'force_subtract': False} DEBUG stpipe.MasterBackgroundStep:master_background_step.py:125 Copying BACKGROUND column to SURF_BRIGHT DEBUG stpipe.MasterBackgroundStep:combine1d.py:564 Using exptime_key = exposure_time. DEBUG stpipe.MasterBackgroundStep:combine1d.py:564 Using exptime_key = exposure_time. INFO stpipe.MasterBackgroundStep:combine1d.py:529 Using exposure time as the weight. INFO stpipe.MasterBackgroundStep:combine1d.py:529 Using exposure time as the weight. WARNING stpipe.MasterBackgroundStep:combine1d.py:89 There is no WCS in the input. WARNING stpipe.MasterBackgroundStep:combine1d.py:89 There is no WCS in the input. INFO stpipe.MasterBackgroundStep:combine1d.py:204 Accumulating data from input spectrum 1 INFO stpipe.MasterBackgroundStep:combine1d.py:204 Accumulating data from input spectrum 1 INFO stpipe.MasterBackgroundStep:nirspec_utils.py:146 Applying point source pathloss updates to IFU background INFO stpipe.MasterBackgroundStep:nirspec_utils.py:146 Applying point source pathloss updates to IFU background WARNING stpipe.MasterBackgroundStep:nirspec_utils.py:152 Pathloss_point array not found in input WARNING stpipe.MasterBackgroundStep:nirspec_utils.py:152 Pathloss_point array not found in input WARNING stpipe.MasterBackgroundStep:nirspec_utils.py:153 Skipping pathloss background updates WARNING stpipe.MasterBackgroundStep:nirspec_utils.py:153 Skipping pathloss background updates INFO stpipe.MasterBackgroundStep:step.py:1016 Saved model in ifu_prism_source_off_NRS1_o001_masterbg1d.fits INFO stpipe.MasterBackgroundStep:step.py:1016 Saved model in ifu_prism_source_on_NRS1_o001_masterbg2d.fits INFO stpipe.MasterBackgroundStep:step.py:1016 Saved model in ifu_prism_source_on_NRS1_master_background.fits INFO stpipe.MasterBackgroundStep:step.py:546 Step MasterBackgroundStep done ____________________ test_nirspec_ifu_mbkg_nod[on-source2d] ____________________ rtdata = {'input': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pyt...s', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_ifu_mbkg_nod/ifu_prism_source_on_NRS1_o001_masterbg2d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} output_file = 'ifu_prism_source_on_NRS1_o001_masterbg2d.fits' @pytest.mark.parametrize( 'output_file', ['ifu_prism_source_on_NRS1_master_background.fits', 'ifu_prism_source_off_NRS1_o001_masterbg1d.fits', 'ifu_prism_source_on_NRS1_o001_masterbg2d.fits'], ids=["on-source", "off-source", "on-source2d"] ) def test_nirspec_ifu_mbkg_nod(rtdata, fitsdiff_default_kwargs, output_file): """Test NIRSpec IFU prism nodded data.""" # Get input data rtdata.get_asn("nirspec/ifu/nirspec_spec3_asn.json") MasterBackgroundStep.call(rtdata.input, save_background=True, save_results=True, suffix='master_background') rtdata.output = output_file # Get the truth file rtdata.get_truth(f"truth/test_nirspec_ifu_mbkg_nod/{output_file}") # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 5.1 E a: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s1/ifu_prism_source_on_NRS1_o001_masterbg2d.fits E b: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s1/truth/ifu_prism_source_on_NRS1_o001_masterbg2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Primary HDU: E E Headers contain differences: E Keyword ASNPOOL has different values: E a> singleton E b> jw95175_20190128T194403_pool E Keyword ASNTABLE has different values: E a> singleton E b> nirspec_spec3_asn.json E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f381d94f370>.identical /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py:178: AssertionError ----------------------------- Captured stderr call ----------------------------- 2022-10-06 05:00:22,485 - stpipe.MasterBackgroundStep - INFO - MasterBackgroundStep instance created. 2022-10-06 05:00:22,957 - stpipe.MasterBackgroundStep - INFO - Step MasterBackgroundStep running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s1/nirspec_spec3_asn.json',). 2022-10-06 05:00:22,958 - stpipe.MasterBackgroundStep - INFO - Step MasterBackgroundStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'master_background', 'search_output_file': True, 'input_dir': '', 'user_background': None, 'save_background': True, 'force_subtract': False} 2022-10-06 05:00:34,609 - stpipe.MasterBackgroundStep - INFO - Using exposure time as the weight. 2022-10-06 05:00:34,610 - stpipe.MasterBackgroundStep - WARNING - There is no WCS in the input. 2022-10-06 05:00:34,621 - stpipe.MasterBackgroundStep - INFO - Accumulating data from input spectrum 1 2022-10-06 05:02:38,961 - stpipe.MasterBackgroundStep - INFO - Applying point source pathloss updates to IFU background 2022-10-06 05:02:38,961 - stpipe.MasterBackgroundStep - WARNING - Pathloss_point array not found in input 2022-10-06 05:02:38,961 - stpipe.MasterBackgroundStep - WARNING - Skipping pathloss background updates 2022-10-06 05:02:46,743 - stpipe.MasterBackgroundStep - INFO - Saved model in ifu_prism_source_off_NRS1_o001_masterbg1d.fits 2022-10-06 05:02:54,229 - stpipe.MasterBackgroundStep - INFO - Saved model in ifu_prism_source_on_NRS1_o001_masterbg2d.fits 2022-10-06 05:03:02,336 - stpipe.MasterBackgroundStep - INFO - Saved model in ifu_prism_source_on_NRS1_master_background.fits 2022-10-06 05:03:02,336 - stpipe.MasterBackgroundStep - INFO - Step MasterBackgroundStep done ------------------------------ Captured log call ------------------------------- INFO stpipe.MasterBackgroundStep:step.py:366 MasterBackgroundStep instance created. INFO stpipe.MasterBackgroundStep:step.py:430 Step MasterBackgroundStep running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s1/nirspec_spec3_asn.json',). INFO stpipe.MasterBackgroundStep:step.py:434 Step MasterBackgroundStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'master_background', 'search_output_file': True, 'input_dir': '', 'user_background': None, 'save_background': True, 'force_subtract': False} DEBUG stpipe.MasterBackgroundStep:master_background_step.py:125 Copying BACKGROUND column to SURF_BRIGHT DEBUG stpipe.MasterBackgroundStep:combine1d.py:564 Using exptime_key = exposure_time. DEBUG stpipe.MasterBackgroundStep:combine1d.py:564 Using exptime_key = exposure_time. INFO stpipe.MasterBackgroundStep:combine1d.py:529 Using exposure time as the weight. INFO stpipe.MasterBackgroundStep:combine1d.py:529 Using exposure time as the weight. WARNING stpipe.MasterBackgroundStep:combine1d.py:89 There is no WCS in the input. WARNING stpipe.MasterBackgroundStep:combine1d.py:89 There is no WCS in the input. INFO stpipe.MasterBackgroundStep:combine1d.py:204 Accumulating data from input spectrum 1 INFO stpipe.MasterBackgroundStep:combine1d.py:204 Accumulating data from input spectrum 1 INFO stpipe.MasterBackgroundStep:nirspec_utils.py:146 Applying point source pathloss updates to IFU background INFO stpipe.MasterBackgroundStep:nirspec_utils.py:146 Applying point source pathloss updates to IFU background WARNING stpipe.MasterBackgroundStep:nirspec_utils.py:152 Pathloss_point array not found in input WARNING stpipe.MasterBackgroundStep:nirspec_utils.py:152 Pathloss_point array not found in input WARNING stpipe.MasterBackgroundStep:nirspec_utils.py:153 Skipping pathloss background updates WARNING stpipe.MasterBackgroundStep:nirspec_utils.py:153 Skipping pathloss background updates INFO stpipe.MasterBackgroundStep:step.py:1016 Saved model in ifu_prism_source_off_NRS1_o001_masterbg1d.fits INFO stpipe.MasterBackgroundStep:step.py:1016 Saved model in ifu_prism_source_on_NRS1_o001_masterbg2d.fits INFO stpipe.MasterBackgroundStep:step.py:1016 Saved model in ifu_prism_source_on_NRS1_master_background.fits INFO stpipe.MasterBackgroundStep:step.py:546 Step MasterBackgroundStep done ______________________ test_nirspec_mos_spec3[s00000-s2d] ______________________ run_pipeline = {'input': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pyt...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00000_nirspec_f170lp-g235m_s2d.fits'} suffix = 's2d', source_id = 's00000' fitsdiff_default_kwargs = {'atol': 1e-05, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 5.1 E a: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s00000_nirspec_f170lp-g235m_s2d.fits E b: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s00000_nirspec_f170lp-g235m_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 1e-05 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword SLTSIZE1 has different values: E a> 1332 E ? ^ E b> 1331 E ? ^ E Keyword SLTSTRT1 has different values: E a> 717 E b> 718 E Keyword SLTSTRT2 has different values: E a> 1345 E ? - E b> 1355 E ? + E E Data contains differences: E Data differs at [647, 20]: E a> 204117170.0 E b> 204082350.0 E 1 different pixels found (0.00% different). E E Extension HDU 2 (ERR, 1): E E Data contains differences: E Data differs at [1147, 4]: E a> 1853027700.0 E b> 1852819300.0 E 1 different pixels found (0.00% different). E E Extension HDU 5 (VAR_POISSON, 1): E E Data contains differences: E Data differs at [678, 3]: E a> 20493084000000.0 E ? ^ - E b> 20473048000000.0 E ? ^ + E Data differs at [1071, 6]: E a> 1.3359063e+17 E b> 1.3364018e+17 E Data differs at [598, 7]: E a> 1.7914156e+18 E ? ^^ ^ E b> 1.7916359e+18 E ? ^^ ^ E Data differs at [94, 20]: E a> 3.1983356e+18 E ? ^^ ^ E b> 3.1987655e+18 E ? ^^ ^ E Data differs at [287, 20]: E a> 3.135009e+17 E b> 3.1345754e+17 E Data differs at [676, 20]: E a> 1.353711e+18 E b> 1.3518948e+18 E Data differs at [1137, 20]: E a> 2.5384378e+18 E ? --- E b> 2.536881e+18 E ? + + E Data differs at [1253, 20]: E a> 1.5878021e+18 E b> 1.589368e+18 E Data differs at [1063, 22]: E a> 74886990000000.0 E ? ^^^^ E b> 74851350000000.0 E ? ^^^^ E 9 different pixels found (0.03% different). E E Extension HDU 6 (VAR_RNOISE, 1): E E Data contains differences: E Data differs at [109, 2]: E a> 2.6767075e+17 E ? ^^^ E b> 2.6763721e+17 E ? + ^^ E Data differs at [1071, 6]: E a> 2.311168e+17 E b> 2.3120254e+17 E 2 different pixels found (0.01% different). E E Extension HDU 7 (VAR_FLAT, 1): E E Data contains differences: E Data differs at [504, 4]: E a> 1.4741995e+18 E ? ^ ^^ E b> 1.4737198e+18 E ? ^^ ^ E Data differs at [1145, 4]: E a> 8.5513027e+18 E ? -- ^ E b> 8.550291e+18 E ? ^^ E Data differs at [1146, 4]: E a> 5.376766e+18 E ? ^ ^ E b> 5.3757614e+18 E ? ^ ^^ E Data differs at [1147, 4]: E a> 2.3749514e+18 E ? ^ -- E b> 2.3741865e+18 E ? ^^^ E Data differs at [64, 22]: E a> 1.0187657e+17 E ? - - E b> 1.0186315e+17 E ? ++ E Data differs at [154, 22]: E a> 1234205300000000.0 E ? - E b> 1234045300000000.0 E ? + E Data differs at [359, 22]: E a> 1508561100000000.0 E ? ^^ ^ E b> 1508371400000000.0 E ? ^^ ^ E Data differs at [480, 22]: E a> 4.7058716e+17 E ? ^^ - E b> 4.705331e+17 E ? ^^ E Data differs at [621, 22]: E a> 4025196400000000.0 E ? --- E b> 4024745400000000.0 E ? +++ E 9 different pixels found (0.03% different). E E Extension HDU 8 (HDRTAB, 1): E E Headers contain differences: E Headers have different number of cards: E a: 816 E b: 820 E Extra keyword 'TTYPE404' in b: 'DEC_REF' E Extra keyword 'TTYPE405' in b: 'ROLL_REF' E Keyword TFIELDS has different values: E a> 403 E b> 405 E Keyword TTYPE263 has different values: E a> R_GAIN E b> R_FRIFRQ E Keyword TTYPE264 has different values: E a> R_IFUFOR E b> R_GAIN E Keyword TTYPE265 has different values: E a> R_IFUPOS E ? ^ ^ E b> R_IFUFOR E ? ^ ^ E Keyword TTYPE266 has different values: E a> R_IFUSLI E ? -- E b> R_IFUPOS E ? ++ E Keyword TTYPE267 has different values: E a> R_IPC E b> R_IFUSLI E Keyword TTYPE268 has different values: E a> R_LASTFR E b> R_IPC E Keyword TTYPE269 has different values: E a> R_LINEAR E b> R_LASTFR E Keyword TTYPE270 has different values: E a> R_MASK E b> R_LINEAR E Keyword TTYPE271 has different values: E a> R_MSA E b> R_MASK E Keyword TTYPE272 has different values: E a> R_OTE E b> R_MSA E Keyword TTYPE273 has different values: E a> R_PTHLOS E b> R_OTE E Keyword TTYPE274 has different values: E a> R_PERSAT E b> R_PTHLOS E Keyword TTYPE275 has different values: E a> R_PHOTOM E b> R_PERSAT E Keyword TTYPE276 has different values: E a> R_PSFMAS E b> R_PHOTOM E Keyword TTYPE277 has different values: E a> R_READNO E b> R_PSFMAS E Keyword TTYPE278 has different values: E a> R_REFPIX E b> R_READNO E Keyword TTYPE279 has different values: E a> R_REGION E b> R_REFPIX E Keyword TTYPE280 has different values: E a> R_RESAMP E b> R_REGION E Keyword TTYPE281 has different values: E a> R_RESOL E b> R_RESAMP E Keyword TTYPE282 has different values: E a> R_RESET E b> R_RESOL E Keyword TTYPE283 has different values: E a> R_RSCD E b> R_RESET E Keyword TTYPE284 has different values: E a> R_SATURA E b> R_RSCD E Keyword TTYPE285 has different values: E a> R_SPKERN E b> R_SATURA E Keyword TTYPE286 has different values: E a> R_SPPROF E b> R_SPKERN E Keyword TTYPE287 has different values: E a> R_SPTRAC E b> R_SPPROF E Keyword TTYPE288 has different values: E a> R_SPCWCS E b> R_SPTRAC E Keyword TTYPE289 has different values: E a> R_STRAY E b> R_SPCWCS E Keyword TTYPE290 has different values: E a> R_SUPERB E b> R_STRAY E Keyword TTYPE291 has different values: E a> R_THRPUT E b> R_SUPERB E Keyword TTYPE292 has different values: E a> R_TRPDEN E b> R_THRPUT E Keyword TTYPE293 has different values: E a> R_TRPPAR E b> R_TRPDEN E Keyword TTYPE294 has different values: E a> R_TSPHOT E b> R_TRPPAR E Keyword TTYPE295 has different values: E a> R_V2V3 E b> R_TSPHOT E Keyword TTYPE296 has different values: E a> R_WAVCOR E b> R_V2V3 E Keyword TTYPE297 has different values: E a> R_WAVRAN E ? -- E b> R_WAVCOR E ? ++ E Keyword TTYPE298 has different values: E a> R_WAVMAP E ? ^ ^ E b> R_WAVRAN E ? ^ ^ E Keyword TTYPE299 has different values: E a> S_PSFALI E b> R_WAVMAP E Keyword TTYPE300 has different values: E a> S_AMIANA E b> S_PSFALI E Keyword TTYPE301 has different values: E a> S_AMIAVG E ? ^^ E b> S_AMIANA E ? ^^ E Keyword TTYPE302 has different values: E a> S_AMINOR E b> S_AMIAVG E Keyword TTYPE303 has different values: E a> S_WCS E b> S_AMINOR E Keyword TTYPE304 has different values: E a> S_MTWCS E ? -- E b> S_WCS E Keyword TTYPE305 has different values: E a> S_BKDSUB E b> S_MTWCS E Keyword TTYPE306 has different values: E a> S_BARSHA E b> S_BKDSUB E Keyword TTYPE307 has different values: E a> S_COMB1D E b> S_BARSHA E Keyword TTYPE308 has different values: E a> S_IFUCUB E b> S_COMB1D E Keyword TTYPE309 has different values: E a> S_DARK E b> S_IFUCUB E Keyword TTYPE310 has different values: E a> S_DQINIT E b> S_DARK E Keyword TTYPE311 has different values: E a> S_TELEMI E b> S_DQINIT E Keyword TTYPE312 has different values: E a> S_ERRINI E b> S_TELEMI E Keyword TTYPE313 has different values: E a> S_EXTR1D E b> S_ERRINI E Keyword TTYPE314 has different values: E a> S_EXTR2D E ? ^ E b> S_EXTR1D E ? ^ E Keyword TTYPE315 has different values: E a> S_FRSTFR E b> S_EXTR2D E Keyword TTYPE316 has different values: E a> S_FLAT E b> S_FRSTFR E Keyword TTYPE317 has different values: E a> S_FRINGE E b> S_FLAT E Keyword TTYPE318 has different values: E a> S_GANSCL E b> S_FRINGE E Keyword TTYPE319 has different values: E a> S_GRPSCL E ? ^^ E b> S_GANSCL E ? ^^ E Keyword TTYPE320 has different values: E a> S_GUICDS E b> S_GRPSCL E Keyword TTYPE321 has different values: E a> S_IMPRNT E b> S_GUICDS E Keyword TTYPE322 has different values: E a> S_IPC E b> S_IMPRNT E Keyword TTYPE323 has different values: E a> S_JUMP E b> S_IPC E Keyword TTYPE324 has different values: E a> S_KLIP E b> S_JUMP E Keyword TTYPE325 has different values: E a> S_LASTFR E b> S_KLIP E Keyword TTYPE326 has different values: E a> S_LINEAR E b> S_LASTFR E Keyword TTYPE327 has different values: E a> S_MSBSUB E b> S_LINEAR E Keyword TTYPE328 has different values: E a> S_MRSMAT E b> S_MSBSUB E Keyword TTYPE329 has different values: E a> S_MSAFLG E b> S_MRSMAT E Keyword TTYPE330 has different values: E a> S_OUTLIR E b> S_MSAFLG E Keyword TTYPE331 has different values: E a> S_PTHLOS E b> S_OUTLIR E Keyword TTYPE332 has different values: E a> S_PERSIS E b> S_PTHLOS E Keyword TTYPE333 has different values: E a> S_PHOTOM E b> S_PERSIS E Keyword TTYPE334 has different values: E a> S_RAMP E b> S_PHOTOM E Keyword TTYPE335 has different values: E a> S_REFPIX E b> S_RAMP E Keyword TTYPE336 has different values: E a> S_RESAMP E b> S_REFPIX E Keyword TTYPE337 has different values: E a> S_RESET E b> S_RESAMP E Keyword TTYPE338 has different values: E a> S_RSCD E b> S_RESFRI E Keyword TTYPE339 has different values: E a> S_SATURA E b> S_RESET E Keyword TTYPE340 has different values: E a> S_SKYMAT E b> S_RSCD E Keyword TTYPE341 has different values: E a> S_SRCCAT E b> S_SATURA E Keyword TTYPE342 has different values: E a> S_SRCTYP E b> S_SKYMAT E Keyword TTYPE343 has different values: E a> S_PSFSTK E b> S_SRCCAT E Keyword TTYPE344 has different values: E a> S_STRAY E b> S_SRCTYP E Keyword TTYPE345 has different values: E a> S_SUPERB E b> S_PSFSTK E Keyword TTYPE346 has different values: E a> S_TSPHOT E b> S_STRAY E Keyword TTYPE347 has different values: E a> S_TWKREG E b> S_SUPERB E Keyword TTYPE348 has different values: E a> S_WAVCOR E b> S_TSPHOT E Keyword TTYPE349 has different values: E a> S_WFSCOM E b> S_TWKREG E Keyword TTYPE350 has different values: E a> S_WHTLIT E b> S_WAVCOR E Keyword TTYPE351 has different values: E a> BKGMETH E b> S_WFSCOM E Keyword TTYPE352 has different values: E a> BKGLEVEL E b> S_WHTLIT E Keyword TTYPE353 has different values: E a> BKGSUB E b> BKGMETH E Keyword TTYPE354 has different values: E a> BUNIT E b> BKGLEVEL E Keyword TTYPE355 has different values: E a> PHOTMJSR E b> BKGSUB E Keyword TTYPE356 has different values: E a> PHOTUJA2 E b> BUNIT E Keyword TTYPE357 has different values: E a> PIXAR_SR E b> PHOTMJSR E Keyword TTYPE358 has different values: E a> PIXAR_A2 E b> PHOTUJA2 E Keyword TTYPE359 has different values: E a> RADESYS E b> PIXAR_SR E Keyword TTYPE360 has different values: E a> RA_V1 E b> PIXAR_A2 E Keyword TTYPE361 has different values: E a> DEC_V1 E b> RADESYS E Keyword TTYPE362 has different values: E a> PA_V3 E b> RA_V1 E Keyword TTYPE363 has different values: E a> WCSAXES E b> DEC_V1 E Keyword TTYPE364 has different values: E a> CRPIX1 E b> PA_V3 E Keyword TTYPE365 has different values: E a> CRPIX2 E b> WCSAXES E Keyword TTYPE366 has different values: E a> CRPIX3 E ? ^ E b> CRPIX1 E ? ^ E Keyword TTYPE367 has different values: E a> CRVAL1 E b> CRPIX2 E Keyword TTYPE368 has different values: E a> CRVAL2 E b> CRPIX3 E Keyword TTYPE369 has different values: E a> CRVAL3 E ? ^ E b> CRVAL1 E ? ^ E Keyword TTYPE370 has different values: E a> CTYPE1 E b> CRVAL2 E Keyword TTYPE371 has different values: E a> CTYPE2 E b> CRVAL3 E Keyword TTYPE372 has different values: E a> CTYPE3 E ? ^ E b> CTYPE1 E ? ^ E Keyword TTYPE373 has different values: E a> CUNIT1 E b> CTYPE2 E Keyword TTYPE374 has different values: E a> CUNIT2 E b> CTYPE3 E Keyword TTYPE375 has different values: E a> CUNIT3 E ? ^ E b> CUNIT1 E ? ^ E Keyword TTYPE376 has different values: E a> CDELT1 E b> CUNIT2 E Keyword TTYPE377 has different values: E a> CDELT2 E b> CUNIT3 E Keyword TTYPE378 has different values: E a> CDELT3 E ? ^ E b> CDELT1 E ? ^ E Keyword TTYPE379 has different values: E a> PC1_1 E b> CDELT2 E Keyword TTYPE380 has different values: E a> PC1_2 E b> CDELT3 E Keyword TTYPE381 has different values: E a> PC1_3 E ? ^ E b> PC1_1 E ? ^ E Keyword TTYPE382 has different values: E a> PC2_1 E b> PC1_2 E Keyword TTYPE383 has different values: E a> PC2_2 E b> PC1_3 E Keyword TTYPE384 has different values: E a> PC2_3 E ? ^ E b> PC2_1 E ? ^ E Keyword TTYPE385 has different values: E a> PC3_1 E b> PC2_2 E Keyword TTYPE386 has different values: E a> PC3_2 E b> PC2_3 E Keyword TTYPE387 has different values: E a> PC3_3 E ? ^ E b> PC3_1 E ? ^ E Keyword TTYPE388 has different values: E a> CD1_1 E b> PC3_2 E Keyword TTYPE389 has different values: E a> CD1_2 E b> PC3_3 E Keyword TTYPE390 has different values: E a> CD2_1 E ? ^ E b> CD1_1 E ? ^ E Keyword TTYPE391 has different values: E a> CD2_2 E ? ^ E b> CD1_2 E ? ^ E Keyword TTYPE392 has different values: E a> S_REGION E b> CD2_1 E Keyword TTYPE393 has different values: E a> WAVSTART E b> CD2_2 E Keyword TTYPE394 has different values: E a> WAVEND E b> S_REGION E Keyword TTYPE395 has different values: E a> DISPAXIS E b> WAVSTART E Keyword TTYPE396 has different values: E a> SPORDER E b> WAVEND E Keyword TTYPE397 has different values: E a> V2_REF E b> DISPAXIS E Keyword TTYPE398 has different values: E a> V3_REF E b> SPORDER E Keyword TTYPE399 has different values: E a> VPARITY E b> V2_REF E Keyword TTYPE400 has different values: E a> V3I_YANG E b> V3_REF E Keyword TTYPE401 has different values: E a> RA_REF E b> VPARITY E Keyword TTYPE402 has different values: E a> DEC_REF E b> V3I_YANG E Keyword TTYPE403 has different values: E a> ROLL_REF E b> RA_REF E E Data contains differences: E Tables have different number of columns: E a: 403 E b: 405 E Extra column R_FRIFRQ of format D in b E Extra column S_RESFRI of format D in b E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f382a558e20>.identical /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:38: AssertionError ______________________ test_nirspec_mos_spec3[s00227-s2d] ______________________ run_pipeline = {'input': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pyt...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00227_nirspec_f170lp-g235m_s2d.fits'} suffix = 's2d', source_id = 's00227' fitsdiff_default_kwargs = {'atol': 1e-05, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 5.1 E a: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s00227_nirspec_f170lp-g235m_s2d.fits E b: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s00227_nirspec_f170lp-g235m_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 1e-05 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword SHUTSTA has different values: E a> 11x E b> x11 E Keyword SRCXPOS has different values: E a> -0.9957999885082245 E b> -0.9634999930858612 E Keyword SRCYPOS has different values: E a> 1.844099998474121 E b> -0.1463000178337097 E E Extension HDU 8 (HDRTAB, 1): E E Headers contain differences: E Headers have different number of cards: E a: 816 E b: 820 E Extra keyword 'TTYPE404' in b: 'DEC_REF' E Extra keyword 'TTYPE405' in b: 'ROLL_REF' E Keyword TFIELDS has different values: E a> 403 E b> 405 E Keyword TTYPE263 has different values: E a> R_GAIN E b> R_FRIFRQ E Keyword TTYPE264 has different values: E a> R_IFUFOR E b> R_GAIN E Keyword TTYPE265 has different values: E a> R_IFUPOS E ? ^ ^ E b> R_IFUFOR E ? ^ ^ E Keyword TTYPE266 has different values: E a> R_IFUSLI E ? -- E b> R_IFUPOS E ? ++ E Keyword TTYPE267 has different values: E a> R_IPC E b> R_IFUSLI E Keyword TTYPE268 has different values: E a> R_LASTFR E b> R_IPC E Keyword TTYPE269 has different values: E a> R_LINEAR E b> R_LASTFR E Keyword TTYPE270 has different values: E a> R_MASK E b> R_LINEAR E Keyword TTYPE271 has different values: E a> R_MSA E b> R_MASK E Keyword TTYPE272 has different values: E a> R_OTE E b> R_MSA E Keyword TTYPE273 has different values: E a> R_PTHLOS E b> R_OTE E Keyword TTYPE274 has different values: E a> R_PERSAT E b> R_PTHLOS E Keyword TTYPE275 has different values: E a> R_PHOTOM E b> R_PERSAT E Keyword TTYPE276 has different values: E a> R_PSFMAS E b> R_PHOTOM E Keyword TTYPE277 has different values: E a> R_READNO E b> R_PSFMAS E Keyword TTYPE278 has different values: E a> R_REFPIX E b> R_READNO E Keyword TTYPE279 has different values: E a> R_REGION E b> R_REFPIX E Keyword TTYPE280 has different values: E a> R_RESAMP E b> R_REGION E Keyword TTYPE281 has different values: E a> R_RESOL E b> R_RESAMP E Keyword TTYPE282 has different values: E a> R_RESET E b> R_RESOL E Keyword TTYPE283 has different values: E a> R_RSCD E b> R_RESET E Keyword TTYPE284 has different values: E a> R_SATURA E b> R_RSCD E Keyword TTYPE285 has different values: E a> R_SPKERN E b> R_SATURA E Keyword TTYPE286 has different values: E a> R_SPPROF E b> R_SPKERN E Keyword TTYPE287 has different values: E a> R_SPTRAC E b> R_SPPROF E Keyword TTYPE288 has different values: E a> R_SPCWCS E b> R_SPTRAC E Keyword TTYPE289 has different values: E a> R_STRAY E b> R_SPCWCS E Keyword TTYPE290 has different values: E a> R_SUPERB E b> R_STRAY E Keyword TTYPE291 has different values: E a> R_THRPUT E b> R_SUPERB E Keyword TTYPE292 has different values: E a> R_TRPDEN E b> R_THRPUT E Keyword TTYPE293 has different values: E a> R_TRPPAR E b> R_TRPDEN E Keyword TTYPE294 has different values: E a> R_TSPHOT E b> R_TRPPAR E Keyword TTYPE295 has different values: E a> R_V2V3 E b> R_TSPHOT E Keyword TTYPE296 has different values: E a> R_WAVCOR E b> R_V2V3 E Keyword TTYPE297 has different values: E a> R_WAVRAN E ? -- E b> R_WAVCOR E ? ++ E Keyword TTYPE298 has different values: E a> R_WAVMAP E ? ^ ^ E b> R_WAVRAN E ? ^ ^ E Keyword TTYPE299 has different values: E a> S_PSFALI E b> R_WAVMAP E Keyword TTYPE300 has different values: E a> S_AMIANA E b> S_PSFALI E Keyword TTYPE301 has different values: E a> S_AMIAVG E ? ^^ E b> S_AMIANA E ? ^^ E Keyword TTYPE302 has different values: E a> S_AMINOR E b> S_AMIAVG E Keyword TTYPE303 has different values: E a> S_WCS E b> S_AMINOR E Keyword TTYPE304 has different values: E a> S_MTWCS E ? -- E b> S_WCS E Keyword TTYPE305 has different values: E a> S_BKDSUB E b> S_MTWCS E Keyword TTYPE306 has different values: E a> S_BARSHA E b> S_BKDSUB E Keyword TTYPE307 has different values: E a> S_COMB1D E b> S_BARSHA E Keyword TTYPE308 has different values: E a> S_IFUCUB E b> S_COMB1D E Keyword TTYPE309 has different values: E a> S_DARK E b> S_IFUCUB E Keyword TTYPE310 has different values: E a> S_DQINIT E b> S_DARK E Keyword TTYPE311 has different values: E a> S_TELEMI E b> S_DQINIT E Keyword TTYPE312 has different values: E a> S_ERRINI E b> S_TELEMI E Keyword TTYPE313 has different values: E a> S_EXTR1D E b> S_ERRINI E Keyword TTYPE314 has different values: E a> S_EXTR2D E ? ^ E b> S_EXTR1D E ? ^ E Keyword TTYPE315 has different values: E a> S_FRSTFR E b> S_EXTR2D E Keyword TTYPE316 has different values: E a> S_FLAT E b> S_FRSTFR E Keyword TTYPE317 has different values: E a> S_FRINGE E b> S_FLAT E Keyword TTYPE318 has different values: E a> S_GANSCL E b> S_FRINGE E Keyword TTYPE319 has different values: E a> S_GRPSCL E ? ^^ E b> S_GANSCL E ? ^^ E Keyword TTYPE320 has different values: E a> S_GUICDS E b> S_GRPSCL E Keyword TTYPE321 has different values: E a> S_IMPRNT E b> S_GUICDS E Keyword TTYPE322 has different values: E a> S_IPC E b> S_IMPRNT E Keyword TTYPE323 has different values: E a> S_JUMP E b> S_IPC E Keyword TTYPE324 has different values: E a> S_KLIP E b> S_JUMP E Keyword TTYPE325 has different values: E a> S_LASTFR E b> S_KLIP E Keyword TTYPE326 has different values: E a> S_LINEAR E b> S_LASTFR E Keyword TTYPE327 has different values: E a> S_MSBSUB E b> S_LINEAR E Keyword TTYPE328 has different values: E a> S_MRSMAT E b> S_MSBSUB E Keyword TTYPE329 has different values: E a> S_MSAFLG E b> S_MRSMAT E Keyword TTYPE330 has different values: E a> S_OUTLIR E b> S_MSAFLG E Keyword TTYPE331 has different values: E a> S_PTHLOS E b> S_OUTLIR E Keyword TTYPE332 has different values: E a> S_PERSIS E b> S_PTHLOS E Keyword TTYPE333 has different values: E a> S_PHOTOM E b> S_PERSIS E Keyword TTYPE334 has different values: E a> S_RAMP E b> S_PHOTOM E Keyword TTYPE335 has different values: E a> S_REFPIX E b> S_RAMP E Keyword TTYPE336 has different values: E a> S_RESAMP E b> S_REFPIX E Keyword TTYPE337 has different values: E a> S_RESET E b> S_RESAMP E Keyword TTYPE338 has different values: E a> S_RSCD E b> S_RESFRI E Keyword TTYPE339 has different values: E a> S_SATURA E b> S_RESET E Keyword TTYPE340 has different values: E a> S_SKYMAT E b> S_RSCD E Keyword TTYPE341 has different values: E a> S_SRCCAT E b> S_SATURA E Keyword TTYPE342 has different values: E a> S_SRCTYP E b> S_SKYMAT E Keyword TTYPE343 has different values: E a> S_PSFSTK E b> S_SRCCAT E Keyword TTYPE344 has different values: E a> S_STRAY E b> S_SRCTYP E Keyword TTYPE345 has different values: E a> S_SUPERB E b> S_PSFSTK E Keyword TTYPE346 has different values: E a> S_TSPHOT E b> S_STRAY E Keyword TTYPE347 has different values: E a> S_TWKREG E b> S_SUPERB E Keyword TTYPE348 has different values: E a> S_WAVCOR E b> S_TSPHOT E Keyword TTYPE349 has different values: E a> S_WFSCOM E b> S_TWKREG E Keyword TTYPE350 has different values: E a> S_WHTLIT E b> S_WAVCOR E Keyword TTYPE351 has different values: E a> BKGMETH E b> S_WFSCOM E Keyword TTYPE352 has different values: E a> BKGLEVEL E b> S_WHTLIT E Keyword TTYPE353 has different values: E a> BKGSUB E b> BKGMETH E Keyword TTYPE354 has different values: E a> BUNIT E b> BKGLEVEL E Keyword TTYPE355 has different values: E a> PHOTMJSR E b> BKGSUB E Keyword TTYPE356 has different values: E a> PHOTUJA2 E b> BUNIT E Keyword TTYPE357 has different values: E a> PIXAR_SR E b> PHOTMJSR E Keyword TTYPE358 has different values: E a> PIXAR_A2 E b> PHOTUJA2 E Keyword TTYPE359 has different values: E a> RADESYS E b> PIXAR_SR E Keyword TTYPE360 has different values: E a> RA_V1 E b> PIXAR_A2 E Keyword TTYPE361 has different values: E a> DEC_V1 E b> RADESYS E Keyword TTYPE362 has different values: E a> PA_V3 E b> RA_V1 E Keyword TTYPE363 has different values: E a> WCSAXES E b> DEC_V1 E Keyword TTYPE364 has different values: E a> CRPIX1 E b> PA_V3 E Keyword TTYPE365 has different values: E a> CRPIX2 E b> WCSAXES E Keyword TTYPE366 has different values: E a> CRPIX3 E ? ^ E b> CRPIX1 E ? ^ E Keyword TTYPE367 has different values: E a> CRVAL1 E b> CRPIX2 E Keyword TTYPE368 has different values: E a> CRVAL2 E b> CRPIX3 E Keyword TTYPE369 has different values: E a> CRVAL3 E ? ^ E b> CRVAL1 E ? ^ E Keyword TTYPE370 has different values: E a> CTYPE1 E b> CRVAL2 E Keyword TTYPE371 has different values: E a> CTYPE2 E b> CRVAL3 E Keyword TTYPE372 has different values: E a> CTYPE3 E ? ^ E b> CTYPE1 E ? ^ E Keyword TTYPE373 has different values: E a> CUNIT1 E b> CTYPE2 E Keyword TTYPE374 has different values: E a> CUNIT2 E b> CTYPE3 E Keyword TTYPE375 has different values: E a> CUNIT3 E ? ^ E b> CUNIT1 E ? ^ E Keyword TTYPE376 has different values: E a> CDELT1 E b> CUNIT2 E Keyword TTYPE377 has different values: E a> CDELT2 E b> CUNIT3 E Keyword TTYPE378 has different values: E a> CDELT3 E ? ^ E b> CDELT1 E ? ^ E Keyword TTYPE379 has different values: E a> PC1_1 E b> CDELT2 E Keyword TTYPE380 has different values: E a> PC1_2 E b> CDELT3 E Keyword TTYPE381 has different values: E a> PC1_3 E ? ^ E b> PC1_1 E ? ^ E Keyword TTYPE382 has different values: E a> PC2_1 E b> PC1_2 E Keyword TTYPE383 has different values: E a> PC2_2 E b> PC1_3 E Keyword TTYPE384 has different values: E a> PC2_3 E ? ^ E b> PC2_1 E ? ^ E Keyword TTYPE385 has different values: E a> PC3_1 E b> PC2_2 E Keyword TTYPE386 has different values: E a> PC3_2 E b> PC2_3 E Keyword TTYPE387 has different values: E a> PC3_3 E ? ^ E b> PC3_1 E ? ^ E Keyword TTYPE388 has different values: E a> CD1_1 E b> PC3_2 E Keyword TTYPE389 has different values: E a> CD1_2 E b> PC3_3 E Keyword TTYPE390 has different values: E a> CD2_1 E ? ^ E b> CD1_1 E ? ^ E Keyword TTYPE391 has different values: E a> CD2_2 E ? ^ E b> CD1_2 E ? ^ E Keyword TTYPE392 has different values: E a> S_REGION E b> CD2_1 E Keyword TTYPE393 has different values: E a> WAVSTART E b> CD2_2 E Keyword TTYPE394 has different values: E a> WAVEND E b> S_REGION E Keyword TTYPE395 has different values: E a> DISPAXIS E b> WAVSTART E Keyword TTYPE396 has different values: E a> SPORDER E b> WAVEND E Keyword TTYPE397 has different values: E a> V2_REF E b> DISPAXIS E Keyword TTYPE398 has different values: E a> V3_REF E b> SPORDER E Keyword TTYPE399 has different values: E a> VPARITY E b> V2_REF E Keyword TTYPE400 has different values: E a> V3I_YANG E b> V3_REF E Keyword TTYPE401 has different values: E a> RA_REF E b> VPARITY E Keyword TTYPE402 has different values: E a> DEC_REF E b> V3I_YANG E Keyword TTYPE403 has different values: E a> ROLL_REF E b> RA_REF E E Data contains differences: E Tables have different number of columns: E a: 403 E b: 405 E Extra column R_FRIFRQ of format D in b E Extra column S_RESFRI of format D in b E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f3819a00970>.identical /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:38: AssertionError ______________________ test_nirspec_mos_spec3[s00227-x1d] ______________________ run_pipeline = {'input': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pyt...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00227_nirspec_f170lp-g235m_x1d.fits'} suffix = 'x1d', source_id = 's00227' fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 5.1 E a: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s00227_nirspec_f170lp-g235m_x1d.fits E b: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s00227_nirspec_f170lp-g235m_x1d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (EXTRACT1D, 1): E E Headers contain differences: E Keyword SHUTSTA has different values: E a> 11x E b> x11 E Keyword SRCXPOS has different values: E a> -0.9957999885082245 E b> -0.9634999930858612 E Keyword SRCYPOS has different values: E a> 1.844099998474121 E b> -0.1463000178337097 E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f384d2e7d90>.identical /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:38: AssertionError ______________________ test_nirspec_mos_spec3[s00279-s2d] ______________________ run_pipeline = {'input': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pyt...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00279_nirspec_f170lp-g235m_s2d.fits'} suffix = 's2d', source_id = 's00279' fitsdiff_default_kwargs = {'atol': 1e-05, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 5.1 E a: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s00279_nirspec_f170lp-g235m_s2d.fits E b: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s00279_nirspec_f170lp-g235m_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 1e-05 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword SHUTSTA has different values: E a> 11x E b> x11 E Keyword SRCXPOS has different values: E a> -0.3410999774932861 E b> -0.3050000071525574 E Keyword SRCYPOS has different values: E a> 1.450700044631958 E b> -0.5469000339508057 E E Extension HDU 8 (HDRTAB, 1): E E Headers contain differences: E Headers have different number of cards: E a: 816 E b: 820 E Extra keyword 'TTYPE404' in b: 'DEC_REF' E Extra keyword 'TTYPE405' in b: 'ROLL_REF' E Keyword TFIELDS has different values: E a> 403 E b> 405 E Keyword TTYPE263 has different values: E a> R_GAIN E b> R_FRIFRQ E Keyword TTYPE264 has different values: E a> R_IFUFOR E b> R_GAIN E Keyword TTYPE265 has different values: E a> R_IFUPOS E ? ^ ^ E b> R_IFUFOR E ? ^ ^ E Keyword TTYPE266 has different values: E a> R_IFUSLI E ? -- E b> R_IFUPOS E ? ++ E Keyword TTYPE267 has different values: E a> R_IPC E b> R_IFUSLI E Keyword TTYPE268 has different values: E a> R_LASTFR E b> R_IPC E Keyword TTYPE269 has different values: E a> R_LINEAR E b> R_LASTFR E Keyword TTYPE270 has different values: E a> R_MASK E b> R_LINEAR E Keyword TTYPE271 has different values: E a> R_MSA E b> R_MASK E Keyword TTYPE272 has different values: E a> R_OTE E b> R_MSA E Keyword TTYPE273 has different values: E a> R_PTHLOS E b> R_OTE E Keyword TTYPE274 has different values: E a> R_PERSAT E b> R_PTHLOS E Keyword TTYPE275 has different values: E a> R_PHOTOM E b> R_PERSAT E Keyword TTYPE276 has different values: E a> R_PSFMAS E b> R_PHOTOM E Keyword TTYPE277 has different values: E a> R_READNO E b> R_PSFMAS E Keyword TTYPE278 has different values: E a> R_REFPIX E b> R_READNO E Keyword TTYPE279 has different values: E a> R_REGION E b> R_REFPIX E Keyword TTYPE280 has different values: E a> R_RESAMP E b> R_REGION E Keyword TTYPE281 has different values: E a> R_RESOL E b> R_RESAMP E Keyword TTYPE282 has different values: E a> R_RESET E b> R_RESOL E Keyword TTYPE283 has different values: E a> R_RSCD E b> R_RESET E Keyword TTYPE284 has different values: E a> R_SATURA E b> R_RSCD E Keyword TTYPE285 has different values: E a> R_SPKERN E b> R_SATURA E Keyword TTYPE286 has different values: E a> R_SPPROF E b> R_SPKERN E Keyword TTYPE287 has different values: E a> R_SPTRAC E b> R_SPPROF E Keyword TTYPE288 has different values: E a> R_SPCWCS E b> R_SPTRAC E Keyword TTYPE289 has different values: E a> R_STRAY E b> R_SPCWCS E Keyword TTYPE290 has different values: E a> R_SUPERB E b> R_STRAY E Keyword TTYPE291 has different values: E a> R_THRPUT E b> R_SUPERB E Keyword TTYPE292 has different values: E a> R_TRPDEN E b> R_THRPUT E Keyword TTYPE293 has different values: E a> R_TRPPAR E b> R_TRPDEN E Keyword TTYPE294 has different values: E a> R_TSPHOT E b> R_TRPPAR E Keyword TTYPE295 has different values: E a> R_V2V3 E b> R_TSPHOT E Keyword TTYPE296 has different values: E a> R_WAVCOR E b> R_V2V3 E Keyword TTYPE297 has different values: E a> R_WAVRAN E ? -- E b> R_WAVCOR E ? ++ E Keyword TTYPE298 has different values: E a> R_WAVMAP E ? ^ ^ E b> R_WAVRAN E ? ^ ^ E Keyword TTYPE299 has different values: E a> S_PSFALI E b> R_WAVMAP E Keyword TTYPE300 has different values: E a> S_AMIANA E b> S_PSFALI E Keyword TTYPE301 has different values: E a> S_AMIAVG E ? ^^ E b> S_AMIANA E ? ^^ E Keyword TTYPE302 has different values: E a> S_AMINOR E b> S_AMIAVG E Keyword TTYPE303 has different values: E a> S_WCS E b> S_AMINOR E Keyword TTYPE304 has different values: E a> S_MTWCS E ? -- E b> S_WCS E Keyword TTYPE305 has different values: E a> S_BKDSUB E b> S_MTWCS E Keyword TTYPE306 has different values: E a> S_BARSHA E b> S_BKDSUB E Keyword TTYPE307 has different values: E a> S_COMB1D E b> S_BARSHA E Keyword TTYPE308 has different values: E a> S_IFUCUB E b> S_COMB1D E Keyword TTYPE309 has different values: E a> S_DARK E b> S_IFUCUB E Keyword TTYPE310 has different values: E a> S_DQINIT E b> S_DARK E Keyword TTYPE311 has different values: E a> S_TELEMI E b> S_DQINIT E Keyword TTYPE312 has different values: E a> S_ERRINI E b> S_TELEMI E Keyword TTYPE313 has different values: E a> S_EXTR1D E b> S_ERRINI E Keyword TTYPE314 has different values: E a> S_EXTR2D E ? ^ E b> S_EXTR1D E ? ^ E Keyword TTYPE315 has different values: E a> S_FRSTFR E b> S_EXTR2D E Keyword TTYPE316 has different values: E a> S_FLAT E b> S_FRSTFR E Keyword TTYPE317 has different values: E a> S_FRINGE E b> S_FLAT E Keyword TTYPE318 has different values: E a> S_GANSCL E b> S_FRINGE E Keyword TTYPE319 has different values: E a> S_GRPSCL E ? ^^ E b> S_GANSCL E ? ^^ E Keyword TTYPE320 has different values: E a> S_GUICDS E b> S_GRPSCL E Keyword TTYPE321 has different values: E a> S_IMPRNT E b> S_GUICDS E Keyword TTYPE322 has different values: E a> S_IPC E b> S_IMPRNT E Keyword TTYPE323 has different values: E a> S_JUMP E b> S_IPC E Keyword TTYPE324 has different values: E a> S_KLIP E b> S_JUMP E Keyword TTYPE325 has different values: E a> S_LASTFR E b> S_KLIP E Keyword TTYPE326 has different values: E a> S_LINEAR E b> S_LASTFR E Keyword TTYPE327 has different values: E a> S_MSBSUB E b> S_LINEAR E Keyword TTYPE328 has different values: E a> S_MRSMAT E b> S_MSBSUB E Keyword TTYPE329 has different values: E a> S_MSAFLG E b> S_MRSMAT E Keyword TTYPE330 has different values: E a> S_OUTLIR E b> S_MSAFLG E Keyword TTYPE331 has different values: E a> S_PTHLOS E b> S_OUTLIR E Keyword TTYPE332 has different values: E a> S_PERSIS E b> S_PTHLOS E Keyword TTYPE333 has different values: E a> S_PHOTOM E b> S_PERSIS E Keyword TTYPE334 has different values: E a> S_RAMP E b> S_PHOTOM E Keyword TTYPE335 has different values: E a> S_REFPIX E b> S_RAMP E Keyword TTYPE336 has different values: E a> S_RESAMP E b> S_REFPIX E Keyword TTYPE337 has different values: E a> S_RESET E b> S_RESAMP E Keyword TTYPE338 has different values: E a> S_RSCD E b> S_RESFRI E Keyword TTYPE339 has different values: E a> S_SATURA E b> S_RESET E Keyword TTYPE340 has different values: E a> S_SKYMAT E b> S_RSCD E Keyword TTYPE341 has different values: E a> S_SRCCAT E b> S_SATURA E Keyword TTYPE342 has different values: E a> S_SRCTYP E b> S_SKYMAT E Keyword TTYPE343 has different values: E a> S_PSFSTK E b> S_SRCCAT E Keyword TTYPE344 has different values: E a> S_STRAY E b> S_SRCTYP E Keyword TTYPE345 has different values: E a> S_SUPERB E b> S_PSFSTK E Keyword TTYPE346 has different values: E a> S_TSPHOT E b> S_STRAY E Keyword TTYPE347 has different values: E a> S_TWKREG E b> S_SUPERB E Keyword TTYPE348 has different values: E a> S_WAVCOR E b> S_TSPHOT E Keyword TTYPE349 has different values: E a> S_WFSCOM E b> S_TWKREG E Keyword TTYPE350 has different values: E a> S_WHTLIT E b> S_WAVCOR E Keyword TTYPE351 has different values: E a> BKGMETH E b> S_WFSCOM E Keyword TTYPE352 has different values: E a> BKGLEVEL E b> S_WHTLIT E Keyword TTYPE353 has different values: E a> BKGSUB E b> BKGMETH E Keyword TTYPE354 has different values: E a> BUNIT E b> BKGLEVEL E Keyword TTYPE355 has different values: E a> PHOTMJSR E b> BKGSUB E Keyword TTYPE356 has different values: E a> PHOTUJA2 E b> BUNIT E Keyword TTYPE357 has different values: E a> PIXAR_SR E b> PHOTMJSR E Keyword TTYPE358 has different values: E a> PIXAR_A2 E b> PHOTUJA2 E Keyword TTYPE359 has different values: E a> RADESYS E b> PIXAR_SR E Keyword TTYPE360 has different values: E a> RA_V1 E b> PIXAR_A2 E Keyword TTYPE361 has different values: E a> DEC_V1 E b> RADESYS E Keyword TTYPE362 has different values: E a> PA_V3 E b> RA_V1 E Keyword TTYPE363 has different values: E a> WCSAXES E b> DEC_V1 E Keyword TTYPE364 has different values: E a> CRPIX1 E b> PA_V3 E Keyword TTYPE365 has different values: E a> CRPIX2 E b> WCSAXES E Keyword TTYPE366 has different values: E a> CRPIX3 E ? ^ E b> CRPIX1 E ? ^ E Keyword TTYPE367 has different values: E a> CRVAL1 E b> CRPIX2 E Keyword TTYPE368 has different values: E a> CRVAL2 E b> CRPIX3 E Keyword TTYPE369 has different values: E a> CRVAL3 E ? ^ E b> CRVAL1 E ? ^ E Keyword TTYPE370 has different values: E a> CTYPE1 E b> CRVAL2 E Keyword TTYPE371 has different values: E a> CTYPE2 E b> CRVAL3 E Keyword TTYPE372 has different values: E a> CTYPE3 E ? ^ E b> CTYPE1 E ? ^ E Keyword TTYPE373 has different values: E a> CUNIT1 E b> CTYPE2 E Keyword TTYPE374 has different values: E a> CUNIT2 E b> CTYPE3 E Keyword TTYPE375 has different values: E a> CUNIT3 E ? ^ E b> CUNIT1 E ? ^ E Keyword TTYPE376 has different values: E a> CDELT1 E b> CUNIT2 E Keyword TTYPE377 has different values: E a> CDELT2 E b> CUNIT3 E Keyword TTYPE378 has different values: E a> CDELT3 E ? ^ E b> CDELT1 E ? ^ E Keyword TTYPE379 has different values: E a> PC1_1 E b> CDELT2 E Keyword TTYPE380 has different values: E a> PC1_2 E b> CDELT3 E Keyword TTYPE381 has different values: E a> PC1_3 E ? ^ E b> PC1_1 E ? ^ E Keyword TTYPE382 has different values: E a> PC2_1 E b> PC1_2 E Keyword TTYPE383 has different values: E a> PC2_2 E b> PC1_3 E Keyword TTYPE384 has different values: E a> PC2_3 E ? ^ E b> PC2_1 E ? ^ E Keyword TTYPE385 has different values: E a> PC3_1 E b> PC2_2 E Keyword TTYPE386 has different values: E a> PC3_2 E b> PC2_3 E Keyword TTYPE387 has different values: E a> PC3_3 E ? ^ E b> PC3_1 E ? ^ E Keyword TTYPE388 has different values: E a> CD1_1 E b> PC3_2 E Keyword TTYPE389 has different values: E a> CD1_2 E b> PC3_3 E Keyword TTYPE390 has different values: E a> CD2_1 E ? ^ E b> CD1_1 E ? ^ E Keyword TTYPE391 has different values: E a> CD2_2 E ? ^ E b> CD1_2 E ? ^ E Keyword TTYPE392 has different values: E a> S_REGION E b> CD2_1 E Keyword TTYPE393 has different values: E a> WAVSTART E b> CD2_2 E Keyword TTYPE394 has different values: E a> WAVEND E b> S_REGION E Keyword TTYPE395 has different values: E a> DISPAXIS E b> WAVSTART E Keyword TTYPE396 has different values: E a> SPORDER E b> WAVEND E Keyword TTYPE397 has different values: E a> V2_REF E b> DISPAXIS E Keyword TTYPE398 has different values: E a> V3_REF E b> SPORDER E Keyword TTYPE399 has different values: E a> VPARITY E b> V2_REF E Keyword TTYPE400 has different values: E a> V3I_YANG E b> V3_REF E Keyword TTYPE401 has different values: E a> RA_REF E b> VPARITY E Keyword TTYPE402 has different values: E a> DEC_REF E b> V3I_YANG E Keyword TTYPE403 has different values: E a> ROLL_REF E b> RA_REF E E Data contains differences: E Tables have different number of columns: E a: 403 E b: 405 E Extra column R_FRIFRQ of format D in b E Extra column S_RESFRI of format D in b E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f382ee00070>.identical /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:38: AssertionError ______________________ test_nirspec_mos_spec3[s00279-x1d] ______________________ run_pipeline = {'input': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pyt...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00279_nirspec_f170lp-g235m_x1d.fits'} suffix = 'x1d', source_id = 's00279' fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 5.1 E a: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s00279_nirspec_f170lp-g235m_x1d.fits E b: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s00279_nirspec_f170lp-g235m_x1d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (EXTRACT1D, 1): E E Headers contain differences: E Keyword SHUTSTA has different values: E a> 11x E b> x11 E Keyword SRCXPOS has different values: E a> -0.3410999774932861 E b> -0.3050000071525574 E Keyword SRCYPOS has different values: E a> 1.450700044631958 E b> -0.5469000339508057 E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f38b6e96be0>.identical /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:38: AssertionError ______________________ test_nirspec_mos_spec3[s00443-s2d] ______________________ run_pipeline = {'input': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pyt...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00443_nirspec_f170lp-g235m_s2d.fits'} suffix = 's2d', source_id = 's00443' fitsdiff_default_kwargs = {'atol': 1e-05, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 5.1 E a: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s00443_nirspec_f170lp-g235m_s2d.fits E b: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s00443_nirspec_f170lp-g235m_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 1e-05 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword SHUTSTA has different values: E a> 11x E b> x11 E Keyword SRCXPOS has different values: E a> -0.383899986743927 E b> -0.3514000177383423 E Keyword SRCYPOS has different values: E a> 1.644999980926514 E b> -0.3780999779701233 E Keyword S_REGION has different values: E a> POLYGON ICRS 98.773526785 -66.832161955 98.814160709 -66.832161955 98.814160709 -66.763084397 98.773526785 -66.763084397 E ? ^ ^ E b> POLYGON ICRS 98.773526786 -66.832161955 98.814160709 -66.832161955 98.814160709 -66.763084397 98.773526786 -66.763084397 E ? ^ ^ E E Extension HDU 3 (WHT, 1): E E Data contains differences: E Data differs at [503, 2]: E a> 0.11776182 E b> 0.1175893 E Data differs at [504, 2]: E a> 2.4455292 E b> 2.444911 E Data differs at [505, 2]: E a> 5.8215814 E b> 5.820961 E Data differs at [868, 2]: E a> 0.874991 E b> 0.87467223 E Data differs at [994, 2]: E a> 0.13416347 E b> 0.13413203 E Data differs at [1103, 2]: E a> 0.04569143 E b> 0.045676395 E 6 different pixels found (0.02% different). E E Extension HDU 8 (HDRTAB, 1): E E Headers contain differences: E Headers have different number of cards: E a: 816 E b: 820 E Extra keyword 'TTYPE404' in b: 'DEC_REF' E Extra keyword 'TTYPE405' in b: 'ROLL_REF' E Keyword TFIELDS has different values: E a> 403 E b> 405 E Keyword TTYPE263 has different values: E a> R_GAIN E b> R_FRIFRQ E Keyword TTYPE264 has different values: E a> R_IFUFOR E b> R_GAIN E Keyword TTYPE265 has different values: E a> R_IFUPOS E ? ^ ^ E b> R_IFUFOR E ? ^ ^ E Keyword TTYPE266 has different values: E a> R_IFUSLI E ? -- E b> R_IFUPOS E ? ++ E Keyword TTYPE267 has different values: E a> R_IPC E b> R_IFUSLI E Keyword TTYPE268 has different values: E a> R_LASTFR E b> R_IPC E Keyword TTYPE269 has different values: E a> R_LINEAR E b> R_LASTFR E Keyword TTYPE270 has different values: E a> R_MASK E b> R_LINEAR E Keyword TTYPE271 has different values: E a> R_MSA E b> R_MASK E Keyword TTYPE272 has different values: E a> R_OTE E b> R_MSA E Keyword TTYPE273 has different values: E a> R_PTHLOS E b> R_OTE E Keyword TTYPE274 has different values: E a> R_PERSAT E b> R_PTHLOS E Keyword TTYPE275 has different values: E a> R_PHOTOM E b> R_PERSAT E Keyword TTYPE276 has different values: E a> R_PSFMAS E b> R_PHOTOM E Keyword TTYPE277 has different values: E a> R_READNO E b> R_PSFMAS E Keyword TTYPE278 has different values: E a> R_REFPIX E b> R_READNO E Keyword TTYPE279 has different values: E a> R_REGION E b> R_REFPIX E Keyword TTYPE280 has different values: E a> R_RESAMP E b> R_REGION E Keyword TTYPE281 has different values: E a> R_RESOL E b> R_RESAMP E Keyword TTYPE282 has different values: E a> R_RESET E b> R_RESOL E Keyword TTYPE283 has different values: E a> R_RSCD E b> R_RESET E Keyword TTYPE284 has different values: E a> R_SATURA E b> R_RSCD E Keyword TTYPE285 has different values: E a> R_SPKERN E b> R_SATURA E Keyword TTYPE286 has different values: E a> R_SPPROF E b> R_SPKERN E Keyword TTYPE287 has different values: E a> R_SPTRAC E b> R_SPPROF E Keyword TTYPE288 has different values: E a> R_SPCWCS E b> R_SPTRAC E Keyword TTYPE289 has different values: E a> R_STRAY E b> R_SPCWCS E Keyword TTYPE290 has different values: E a> R_SUPERB E b> R_STRAY E Keyword TTYPE291 has different values: E a> R_THRPUT E b> R_SUPERB E Keyword TTYPE292 has different values: E a> R_TRPDEN E b> R_THRPUT E Keyword TTYPE293 has different values: E a> R_TRPPAR E b> R_TRPDEN E Keyword TTYPE294 has different values: E a> R_TSPHOT E b> R_TRPPAR E Keyword TTYPE295 has different values: E a> R_V2V3 E b> R_TSPHOT E Keyword TTYPE296 has different values: E a> R_WAVCOR E b> R_V2V3 E Keyword TTYPE297 has different values: E a> R_WAVRAN E ? -- E b> R_WAVCOR E ? ++ E Keyword TTYPE298 has different values: E a> R_WAVMAP E ? ^ ^ E b> R_WAVRAN E ? ^ ^ E Keyword TTYPE299 has different values: E a> S_PSFALI E b> R_WAVMAP E Keyword TTYPE300 has different values: E a> S_AMIANA E b> S_PSFALI E Keyword TTYPE301 has different values: E a> S_AMIAVG E ? ^^ E b> S_AMIANA E ? ^^ E Keyword TTYPE302 has different values: E a> S_AMINOR E b> S_AMIAVG E Keyword TTYPE303 has different values: E a> S_WCS E b> S_AMINOR E Keyword TTYPE304 has different values: E a> S_MTWCS E ? -- E b> S_WCS E Keyword TTYPE305 has different values: E a> S_BKDSUB E b> S_MTWCS E Keyword TTYPE306 has different values: E a> S_BARSHA E b> S_BKDSUB E Keyword TTYPE307 has different values: E a> S_COMB1D E b> S_BARSHA E Keyword TTYPE308 has different values: E a> S_IFUCUB E b> S_COMB1D E Keyword TTYPE309 has different values: E a> S_DARK E b> S_IFUCUB E Keyword TTYPE310 has different values: E a> S_DQINIT E b> S_DARK E Keyword TTYPE311 has different values: E a> S_TELEMI E b> S_DQINIT E Keyword TTYPE312 has different values: E a> S_ERRINI E b> S_TELEMI E Keyword TTYPE313 has different values: E a> S_EXTR1D E b> S_ERRINI E Keyword TTYPE314 has different values: E a> S_EXTR2D E ? ^ E b> S_EXTR1D E ? ^ E Keyword TTYPE315 has different values: E a> S_FRSTFR E b> S_EXTR2D E Keyword TTYPE316 has different values: E a> S_FLAT E b> S_FRSTFR E Keyword TTYPE317 has different values: E a> S_FRINGE E b> S_FLAT E Keyword TTYPE318 has different values: E a> S_GANSCL E b> S_FRINGE E Keyword TTYPE319 has different values: E a> S_GRPSCL E ? ^^ E b> S_GANSCL E ? ^^ E Keyword TTYPE320 has different values: E a> S_GUICDS E b> S_GRPSCL E Keyword TTYPE321 has different values: E a> S_IMPRNT E b> S_GUICDS E Keyword TTYPE322 has different values: E a> S_IPC E b> S_IMPRNT E Keyword TTYPE323 has different values: E a> S_JUMP E b> S_IPC E Keyword TTYPE324 has different values: E a> S_KLIP E b> S_JUMP E Keyword TTYPE325 has different values: E a> S_LASTFR E b> S_KLIP E Keyword TTYPE326 has different values: E a> S_LINEAR E b> S_LASTFR E Keyword TTYPE327 has different values: E a> S_MSBSUB E b> S_LINEAR E Keyword TTYPE328 has different values: E a> S_MRSMAT E b> S_MSBSUB E Keyword TTYPE329 has different values: E a> S_MSAFLG E b> S_MRSMAT E Keyword TTYPE330 has different values: E a> S_OUTLIR E b> S_MSAFLG E Keyword TTYPE331 has different values: E a> S_PTHLOS E b> S_OUTLIR E Keyword TTYPE332 has different values: E a> S_PERSIS E b> S_PTHLOS E Keyword TTYPE333 has different values: E a> S_PHOTOM E b> S_PERSIS E Keyword TTYPE334 has different values: E a> S_RAMP E b> S_PHOTOM E Keyword TTYPE335 has different values: E a> S_REFPIX E b> S_RAMP E Keyword TTYPE336 has different values: E a> S_RESAMP E b> S_REFPIX E Keyword TTYPE337 has different values: E a> S_RESET E b> S_RESAMP E Keyword TTYPE338 has different values: E a> S_RSCD E b> S_RESFRI E Keyword TTYPE339 has different values: E a> S_SATURA E b> S_RESET E Keyword TTYPE340 has different values: E a> S_SKYMAT E b> S_RSCD E Keyword TTYPE341 has different values: E a> S_SRCCAT E b> S_SATURA E Keyword TTYPE342 has different values: E a> S_SRCTYP E b> S_SKYMAT E Keyword TTYPE343 has different values: E a> S_PSFSTK E b> S_SRCCAT E Keyword TTYPE344 has different values: E a> S_STRAY E b> S_SRCTYP E Keyword TTYPE345 has different values: E a> S_SUPERB E b> S_PSFSTK E Keyword TTYPE346 has different values: E a> S_TSPHOT E b> S_STRAY E Keyword TTYPE347 has different values: E a> S_TWKREG E b> S_SUPERB E Keyword TTYPE348 has different values: E a> S_WAVCOR E b> S_TSPHOT E Keyword TTYPE349 has different values: E a> S_WFSCOM E b> S_TWKREG E Keyword TTYPE350 has different values: E a> S_WHTLIT E b> S_WAVCOR E Keyword TTYPE351 has different values: E a> BKGMETH E b> S_WFSCOM E Keyword TTYPE352 has different values: E a> BKGLEVEL E b> S_WHTLIT E Keyword TTYPE353 has different values: E a> BKGSUB E b> BKGMETH E Keyword TTYPE354 has different values: E a> BUNIT E b> BKGLEVEL E Keyword TTYPE355 has different values: E a> PHOTMJSR E b> BKGSUB E Keyword TTYPE356 has different values: E a> PHOTUJA2 E b> BUNIT E Keyword TTYPE357 has different values: E a> PIXAR_SR E b> PHOTMJSR E Keyword TTYPE358 has different values: E a> PIXAR_A2 E b> PHOTUJA2 E Keyword TTYPE359 has different values: E a> RADESYS E b> PIXAR_SR E Keyword TTYPE360 has different values: E a> RA_V1 E b> PIXAR_A2 E Keyword TTYPE361 has different values: E a> DEC_V1 E b> RADESYS E Keyword TTYPE362 has different values: E a> PA_V3 E b> RA_V1 E Keyword TTYPE363 has different values: E a> WCSAXES E b> DEC_V1 E Keyword TTYPE364 has different values: E a> CRPIX1 E b> PA_V3 E Keyword TTYPE365 has different values: E a> CRPIX2 E b> WCSAXES E Keyword TTYPE366 has different values: E a> CRPIX3 E ? ^ E b> CRPIX1 E ? ^ E Keyword TTYPE367 has different values: E a> CRVAL1 E b> CRPIX2 E Keyword TTYPE368 has different values: E a> CRVAL2 E b> CRPIX3 E Keyword TTYPE369 has different values: E a> CRVAL3 E ? ^ E b> CRVAL1 E ? ^ E Keyword TTYPE370 has different values: E a> CTYPE1 E b> CRVAL2 E Keyword TTYPE371 has different values: E a> CTYPE2 E b> CRVAL3 E Keyword TTYPE372 has different values: E a> CTYPE3 E ? ^ E b> CTYPE1 E ? ^ E Keyword TTYPE373 has different values: E a> CUNIT1 E b> CTYPE2 E Keyword TTYPE374 has different values: E a> CUNIT2 E b> CTYPE3 E Keyword TTYPE375 has different values: E a> CUNIT3 E ? ^ E b> CUNIT1 E ? ^ E Keyword TTYPE376 has different values: E a> CDELT1 E b> CUNIT2 E Keyword TTYPE377 has different values: E a> CDELT2 E b> CUNIT3 E Keyword TTYPE378 has different values: E a> CDELT3 E ? ^ E b> CDELT1 E ? ^ E Keyword TTYPE379 has different values: E a> PC1_1 E b> CDELT2 E Keyword TTYPE380 has different values: E a> PC1_2 E b> CDELT3 E Keyword TTYPE381 has different values: E a> PC1_3 E ? ^ E b> PC1_1 E ? ^ E Keyword TTYPE382 has different values: E a> PC2_1 E b> PC1_2 E Keyword TTYPE383 has different values: E a> PC2_2 E b> PC1_3 E Keyword TTYPE384 has different values: E a> PC2_3 E ? ^ E b> PC2_1 E ? ^ E Keyword TTYPE385 has different values: E a> PC3_1 E b> PC2_2 E Keyword TTYPE386 has different values: E a> PC3_2 E b> PC2_3 E Keyword TTYPE387 has different values: E a> PC3_3 E ? ^ E b> PC3_1 E ? ^ E Keyword TTYPE388 has different values: E a> CD1_1 E b> PC3_2 E Keyword TTYPE389 has different values: E a> CD1_2 E b> PC3_3 E Keyword TTYPE390 has different values: E a> CD2_1 E ? ^ E b> CD1_1 E ? ^ E Keyword TTYPE391 has different values: E a> CD2_2 E ? ^ E b> CD1_2 E ? ^ E Keyword TTYPE392 has different values: E a> S_REGION E b> CD2_1 E Keyword TTYPE393 has different values: E a> WAVSTART E b> CD2_2 E Keyword TTYPE394 has different values: E a> WAVEND E b> S_REGION E Keyword TTYPE395 has different values: E a> DISPAXIS E b> WAVSTART E Keyword TTYPE396 has different values: E a> SPORDER E b> WAVEND E Keyword TTYPE397 has different values: E a> V2_REF E b> DISPAXIS E Keyword TTYPE398 has different values: E a> V3_REF E b> SPORDER E Keyword TTYPE399 has different values: E a> VPARITY E b> V2_REF E Keyword TTYPE400 has different values: E a> V3I_YANG E b> V3_REF E Keyword TTYPE401 has different values: E a> RA_REF E b> VPARITY E Keyword TTYPE402 has different values: E a> DEC_REF E b> V3I_YANG E Keyword TTYPE403 has different values: E a> ROLL_REF E b> RA_REF E E Data contains differences: E Tables have different number of columns: E a: 403 E b: 405 E Extra column R_FRIFRQ of format D in b E Extra column S_RESFRI of format D in b E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f383bf4e310>.identical /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:38: AssertionError ______________________ test_nirspec_mos_spec3[s00443-x1d] ______________________ run_pipeline = {'input': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pyt...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00443_nirspec_f170lp-g235m_x1d.fits'} suffix = 'x1d', source_id = 's00443' fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 5.1 E a: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s00443_nirspec_f170lp-g235m_x1d.fits E b: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s00443_nirspec_f170lp-g235m_x1d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (EXTRACT1D, 1): E E Headers contain differences: E Keyword SHUTSTA has different values: E a> 11x E b> x11 E Keyword SRCXPOS has different values: E a> -0.383899986743927 E b> -0.3514000177383423 E Keyword SRCYPOS has different values: E a> 1.644999980926514 E b> -0.3780999779701233 E E Data contains differences: E Column FLUX_ERROR data differs in row 468: E a> 137160.30871273065 E b> 137158.2089663644 E Column FLUX_VAR_POISSON data differs in row 478: E a> 31149950533.290394 E b> 31150334631.092846 E Column FLUX_VAR_POISSON data differs in row 854: E a> 2813272880.075601 E b> 2813306768.53031 E Column FLUX_VAR_RNOISE data differs in row 468: E a> 18203246414.486782 E b> 18202670486.06183 E 4 different table data element(s) found (0.02% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f381d2d4af0>.identical /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:38: AssertionError ______________________ test_nirspec_mos_spec3[s00482-s2d] ______________________ run_pipeline = {'input': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pyt...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00482_nirspec_f170lp-g235m_s2d.fits'} suffix = 's2d', source_id = 's00482' fitsdiff_default_kwargs = {'atol': 1e-05, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 5.1 E a: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s00482_nirspec_f170lp-g235m_s2d.fits E b: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s00482_nirspec_f170lp-g235m_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 1e-05 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword SHUTSTA has different values: E a> 11x E b> x11 E Keyword SRCXPOS has different values: E a> -0.383899986743927 E b> -0.3514000177383423 E Keyword SRCYPOS has different values: E a> 1.644999980926514 E b> -0.3780999779701233 E E Data contains differences: E Data differs at [734, 3]: E a> 4444918000000.0 E ? --- E b> 4445374000000.0 E ? +++ E Data differs at [1103, 5]: E a> 4780798000.0 E ? ^^ ^ E b> 4781292000.0 E ? ^^ ^ E Data differs at [804, 8]: E a> 692447550.0 E b> 692604200.0 E Data differs at [849, 8]: E a> 292253340.0 E b> 292203100.0 E Data differs at [850, 8]: E a> 309857500.0 E b> 309823580.0 E Data differs at [1024, 8]: E a> 766796600.0 E b> 766713700.0 E Data differs at [1025, 8]: E a> 1084214500.0 E ? ^ -- E b> 1084067100.0 E ? ^^^ E Data differs at [1170, 8]: E a> 444070820.0 E b> 444007550.0 E Data differs at [1171, 8]: E a> 977789200.0 E ? ^ ^ E b> 977682200.0 E ? ^ ^ E Data differs at [655, 15]: E a> 1061520300.0 E b> 1061189100.0 E ... E 14 different pixels found (0.04% different). E E Extension HDU 2 (ERR, 1): E E Data contains differences: E Data differs at [388, 4]: E a> 2659289100000.0 E ? ^^^ E b> 2659571000000.0 E ? ^^ + E Data differs at [389, 4]: E a> 2644651800000.0 E b> 2644970300000.0 E Data differs at [390, 4]: E a> 2542429000000.0 E ? ^^^ E b> 2542783000000.0 E ? ^^^ E Data differs at [391, 4]: E a> 2380173100000.0 E b> 2380566400000.0 E Data differs at [392, 4]: E a> 2026998600000.0 E b> 2027409200000.0 E Data differs at [393, 4]: E a> 2285461000000.0 E ? ^ ^^ E b> 2285869500000.0 E ? ^ ^^ E Data differs at [394, 4]: E a> 1684310900000.0 E b> 1684856200000.0 E Data differs at [395, 4]: E a> 1186420900000.0 E ? ^^ ^ E b> 1187229200000.0 E ? ^ ^ + E Data differs at [396, 4]: E a> 576782000000.0 E b> 578036400000.0 E Data differs at [730, 4]: E a> 2417794700000.0 E b> 2418065800000.0 E ... E 87 different pixels found (0.24% different). E E Extension HDU 5 (VAR_POISSON, 1): E E Data contains differences: E Data differs at [58, 2]: E a> 4.724985e+18 E ? - ^^ E b> 4.729072e+18 E ? ^^^ E Data differs at [357, 2]: E a> 4.4744994e+18 E b> 4.4716783e+18 E Data differs at [359, 2]: E a> 1.1920791e+18 E ? --- E b> 1.1919215e+18 E ? ++ + E Data differs at [1086, 2]: E a> 3.7705284e+19 E b> 3.7625415e+19 E Data differs at [387, 4]: E a> 5.322239e+16 E ? ^^ E b> 5.323259e+16 E ? + ^ E Data differs at [388, 4]: E a> 1.2184658e+16 E b> 1.218713e+16 E Data differs at [395, 4]: E a> 2898283400000000.0 E b> 2902602000000000.0 E Data differs at [727, 4]: E a> 5.9855493e+16 E ? ---- E b> 5.98615e+16 E ? ++ E Data differs at [728, 4]: E a> 1.3693633e+16 E ? ^^^ E b> 1.3695143e+16 E ? ^^^ E Data differs at [461, 5]: E a> 1.7359703e+17 E ? - ^ E b> 1.7357353e+17 E ? ^^ E ... E 132 different pixels found (0.36% different). E E Extension HDU 6 (VAR_RNOISE, 1): E E Data contains differences: E Data differs at [357, 2]: E a> 3.2213808e+19 E b> 3.220761e+19 E Data differs at [1086, 2]: E a> 2.1367146e+19 E ? ^^ ^ E b> 2.1321886e+19 E ? ^ ^^ E Data differs at [423, 5]: E a> 8.23329e+18 E ? -- E b> 8.2345873e+18 E ? ++++ E Data differs at [469, 5]: E a> 2.108482e+19 E ? ^^ E b> 2.1081792e+19 E ? ^^^ E Data differs at [470, 5]: E a> 6.831217e+18 E b> 6.8304906e+18 E Data differs at [765, 5]: E a> 4.099863e+18 E ? ^^ E b> 4.0993287e+18 E ? ++ ^ E Data differs at [804, 9]: E a> 7.263169e+17 E b> 7.2643544e+17 E Data differs at [173, 15]: E a> 2.696037e+17 E b> 2.6955727e+17 E Data differs at [728, 15]: E a> 1.05991725e+18 E ? ^ - ^ E b> 1.0597128e+18 E ? ^ ^ E Data differs at [420, 16]: E a> 8.561116e+17 E b> 8.559694e+17 E ... E 22 different pixels found (0.06% different). E E Extension HDU 7 (VAR_FLAT, 1): E E Data contains differences: E Data differs at [379, 4]: E a> 1.5177812e+25 E ? ^ - E b> 1.5179381e+25 E ? ^^ E Data differs at [380, 4]: E a> 1.4063256e+25 E ? ^^ - E b> 1.4064795e+25 E ? ^^^ E Data differs at [381, 4]: E a> 1.2537335e+25 E ? ^^^ E b> 1.2538796e+25 E ? + ^^ E Data differs at [382, 4]: E a> 1.2280496e+25 E ? -- E b> 1.2282024e+25 E ? + + E Data differs at [383, 4]: E a> 1.121086e+25 E ? ^ - E b> 1.1212358e+25 E ? ^^^ E Data differs at [384, 4]: E a> 1.0898665e+25 E b> 1.0900235e+25 E Data differs at [385, 4]: E a> 1.0446992e+25 E ? -- E b> 1.0448629e+25 E ? + + E Data differs at [386, 4]: E a> 8.6795874e+24 E ? --- E b> 8.681074e+24 E ? ++ E Data differs at [387, 4]: E a> 8.3020736e+24 E ? --- E b> 8.3036497e+24 E ? +++ E Data differs at [388, 4]: E a> 7.0718164e+24 E ? --- E b> 7.073314e+24 E ? ++ E ... E 299 different pixels found (0.82% different). E E Extension HDU 8 (HDRTAB, 1): E E Headers contain differences: E Headers have different number of cards: E a: 816 E b: 820 E Extra keyword 'TTYPE404' in b: 'DEC_REF' E Extra keyword 'TTYPE405' in b: 'ROLL_REF' E Keyword TFIELDS has different values: E a> 403 E b> 405 E Keyword TTYPE263 has different values: E a> R_GAIN E b> R_FRIFRQ E Keyword TTYPE264 has different values: E a> R_IFUFOR E b> R_GAIN E Keyword TTYPE265 has different values: E a> R_IFUPOS E ? ^ ^ E b> R_IFUFOR E ? ^ ^ E Keyword TTYPE266 has different values: E a> R_IFUSLI E ? -- E b> R_IFUPOS E ? ++ E Keyword TTYPE267 has different values: E a> R_IPC E b> R_IFUSLI E Keyword TTYPE268 has different values: E a> R_LASTFR E b> R_IPC E Keyword TTYPE269 has different values: E a> R_LINEAR E b> R_LASTFR E Keyword TTYPE270 has different values: E a> R_MASK E b> R_LINEAR E Keyword TTYPE271 has different values: E a> R_MSA E b> R_MASK E Keyword TTYPE272 has different values: E a> R_OTE E b> R_MSA E Keyword TTYPE273 has different values: E a> R_PTHLOS E b> R_OTE E Keyword TTYPE274 has different values: E a> R_PERSAT E b> R_PTHLOS E Keyword TTYPE275 has different values: E a> R_PHOTOM E b> R_PERSAT E Keyword TTYPE276 has different values: E a> R_PSFMAS E b> R_PHOTOM E Keyword TTYPE277 has different values: E a> R_READNO E b> R_PSFMAS E Keyword TTYPE278 has different values: E a> R_REFPIX E b> R_READNO E Keyword TTYPE279 has different values: E a> R_REGION E b> R_REFPIX E Keyword TTYPE280 has different values: E a> R_RESAMP E b> R_REGION E Keyword TTYPE281 has different values: E a> R_RESOL E b> R_RESAMP E Keyword TTYPE282 has different values: E a> R_RESET E b> R_RESOL E Keyword TTYPE283 has different values: E a> R_RSCD E b> R_RESET E Keyword TTYPE284 has different values: E a> R_SATURA E b> R_RSCD E Keyword TTYPE285 has different values: E a> R_SPKERN E b> R_SATURA E Keyword TTYPE286 has different values: E a> R_SPPROF E b> R_SPKERN E Keyword TTYPE287 has different values: E a> R_SPTRAC E b> R_SPPROF E Keyword TTYPE288 has different values: E a> R_SPCWCS E b> R_SPTRAC E Keyword TTYPE289 has different values: E a> R_STRAY E b> R_SPCWCS E Keyword TTYPE290 has different values: E a> R_SUPERB E b> R_STRAY E Keyword TTYPE291 has different values: E a> R_THRPUT E b> R_SUPERB E Keyword TTYPE292 has different values: E a> R_TRPDEN E b> R_THRPUT E Keyword TTYPE293 has different values: E a> R_TRPPAR E b> R_TRPDEN E Keyword TTYPE294 has different values: E a> R_TSPHOT E b> R_TRPPAR E Keyword TTYPE295 has different values: E a> R_V2V3 E b> R_TSPHOT E Keyword TTYPE296 has different values: E a> R_WAVCOR E b> R_V2V3 E Keyword TTYPE297 has different values: E a> R_WAVRAN E ? -- E b> R_WAVCOR E ? ++ E Keyword TTYPE298 has different values: E a> R_WAVMAP E ? ^ ^ E b> R_WAVRAN E ? ^ ^ E Keyword TTYPE299 has different values: E a> S_PSFALI E b> R_WAVMAP E Keyword TTYPE300 has different values: E a> S_AMIANA E b> S_PSFALI E Keyword TTYPE301 has different values: E a> S_AMIAVG E ? ^^ E b> S_AMIANA E ? ^^ E Keyword TTYPE302 has different values: E a> S_AMINOR E b> S_AMIAVG E Keyword TTYPE303 has different values: E a> S_WCS E b> S_AMINOR E Keyword TTYPE304 has different values: E a> S_MTWCS E ? -- E b> S_WCS E Keyword TTYPE305 has different values: E a> S_BKDSUB E b> S_MTWCS E Keyword TTYPE306 has different values: E a> S_BARSHA E b> S_BKDSUB E Keyword TTYPE307 has different values: E a> S_COMB1D E b> S_BARSHA E Keyword TTYPE308 has different values: E a> S_IFUCUB E b> S_COMB1D E Keyword TTYPE309 has different values: E a> S_DARK E b> S_IFUCUB E Keyword TTYPE310 has different values: E a> S_DQINIT E b> S_DARK E Keyword TTYPE311 has different values: E a> S_TELEMI E b> S_DQINIT E Keyword TTYPE312 has different values: E a> S_ERRINI E b> S_TELEMI E Keyword TTYPE313 has different values: E a> S_EXTR1D E b> S_ERRINI E Keyword TTYPE314 has different values: E a> S_EXTR2D E ? ^ E b> S_EXTR1D E ? ^ E Keyword TTYPE315 has different values: E a> S_FRSTFR E b> S_EXTR2D E Keyword TTYPE316 has different values: E a> S_FLAT E b> S_FRSTFR E Keyword TTYPE317 has different values: E a> S_FRINGE E b> S_FLAT E Keyword TTYPE318 has different values: E a> S_GANSCL E b> S_FRINGE E Keyword TTYPE319 has different values: E a> S_GRPSCL E ? ^^ E b> S_GANSCL E ? ^^ E Keyword TTYPE320 has different values: E a> S_GUICDS E b> S_GRPSCL E Keyword TTYPE321 has different values: E a> S_IMPRNT E b> S_GUICDS E Keyword TTYPE322 has different values: E a> S_IPC E b> S_IMPRNT E Keyword TTYPE323 has different values: E a> S_JUMP E b> S_IPC E Keyword TTYPE324 has different values: E a> S_KLIP E b> S_JUMP E Keyword TTYPE325 has different values: E a> S_LASTFR E b> S_KLIP E Keyword TTYPE326 has different values: E a> S_LINEAR E b> S_LASTFR E Keyword TTYPE327 has different values: E a> S_MSBSUB E b> S_LINEAR E Keyword TTYPE328 has different values: E a> S_MRSMAT E b> S_MSBSUB E Keyword TTYPE329 has different values: E a> S_MSAFLG E b> S_MRSMAT E Keyword TTYPE330 has different values: E a> S_OUTLIR E b> S_MSAFLG E Keyword TTYPE331 has different values: E a> S_PTHLOS E b> S_OUTLIR E Keyword TTYPE332 has different values: E a> S_PERSIS E b> S_PTHLOS E Keyword TTYPE333 has different values: E a> S_PHOTOM E b> S_PERSIS E Keyword TTYPE334 has different values: E a> S_RAMP E b> S_PHOTOM E Keyword TTYPE335 has different values: E a> S_REFPIX E b> S_RAMP E Keyword TTYPE336 has different values: E a> S_RESAMP E b> S_REFPIX E Keyword TTYPE337 has different values: E a> S_RESET E b> S_RESAMP E Keyword TTYPE338 has different values: E a> S_RSCD E b> S_RESFRI E Keyword TTYPE339 has different values: E a> S_SATURA E b> S_RESET E Keyword TTYPE340 has different values: E a> S_SKYMAT E b> S_RSCD E Keyword TTYPE341 has different values: E a> S_SRCCAT E b> S_SATURA E Keyword TTYPE342 has different values: E a> S_SRCTYP E b> S_SKYMAT E Keyword TTYPE343 has different values: E a> S_PSFSTK E b> S_SRCCAT E Keyword TTYPE344 has different values: E a> S_STRAY E b> S_SRCTYP E Keyword TTYPE345 has different values: E a> S_SUPERB E b> S_PSFSTK E Keyword TTYPE346 has different values: E a> S_TSPHOT E b> S_STRAY E Keyword TTYPE347 has different values: E a> S_TWKREG E b> S_SUPERB E Keyword TTYPE348 has different values: E a> S_WAVCOR E b> S_TSPHOT E Keyword TTYPE349 has different values: E a> S_WFSCOM E b> S_TWKREG E Keyword TTYPE350 has different values: E a> S_WHTLIT E b> S_WAVCOR E Keyword TTYPE351 has different values: E a> BKGMETH E b> S_WFSCOM E Keyword TTYPE352 has different values: E a> BKGLEVEL E b> S_WHTLIT E Keyword TTYPE353 has different values: E a> BKGSUB E b> BKGMETH E Keyword TTYPE354 has different values: E a> BUNIT E b> BKGLEVEL E Keyword TTYPE355 has different values: E a> PHOTMJSR E b> BKGSUB E Keyword TTYPE356 has different values: E a> PHOTUJA2 E b> BUNIT E Keyword TTYPE357 has different values: E a> PIXAR_SR E b> PHOTMJSR E Keyword TTYPE358 has different values: E a> PIXAR_A2 E b> PHOTUJA2 E Keyword TTYPE359 has different values: E a> RADESYS E b> PIXAR_SR E Keyword TTYPE360 has different values: E a> RA_V1 E b> PIXAR_A2 E Keyword TTYPE361 has different values: E a> DEC_V1 E b> RADESYS E Keyword TTYPE362 has different values: E a> PA_V3 E b> RA_V1 E Keyword TTYPE363 has different values: E a> WCSAXES E b> DEC_V1 E Keyword TTYPE364 has different values: E a> CRPIX1 E b> PA_V3 E Keyword TTYPE365 has different values: E a> CRPIX2 E b> WCSAXES E Keyword TTYPE366 has different values: E a> CRPIX3 E ? ^ E b> CRPIX1 E ? ^ E Keyword TTYPE367 has different values: E a> CRVAL1 E b> CRPIX2 E Keyword TTYPE368 has different values: E a> CRVAL2 E b> CRPIX3 E Keyword TTYPE369 has different values: E a> CRVAL3 E ? ^ E b> CRVAL1 E ? ^ E Keyword TTYPE370 has different values: E a> CTYPE1 E b> CRVAL2 E Keyword TTYPE371 has different values: E a> CTYPE2 E b> CRVAL3 E Keyword TTYPE372 has different values: E a> CTYPE3 E ? ^ E b> CTYPE1 E ? ^ E Keyword TTYPE373 has different values: E a> CUNIT1 E b> CTYPE2 E Keyword TTYPE374 has different values: E a> CUNIT2 E b> CTYPE3 E Keyword TTYPE375 has different values: E a> CUNIT3 E ? ^ E b> CUNIT1 E ? ^ E Keyword TTYPE376 has different values: E a> CDELT1 E b> CUNIT2 E Keyword TTYPE377 has different values: E a> CDELT2 E b> CUNIT3 E Keyword TTYPE378 has different values: E a> CDELT3 E ? ^ E b> CDELT1 E ? ^ E Keyword TTYPE379 has different values: E a> PC1_1 E b> CDELT2 E Keyword TTYPE380 has different values: E a> PC1_2 E b> CDELT3 E Keyword TTYPE381 has different values: E a> PC1_3 E ? ^ E b> PC1_1 E ? ^ E Keyword TTYPE382 has different values: E a> PC2_1 E b> PC1_2 E Keyword TTYPE383 has different values: E a> PC2_2 E b> PC1_3 E Keyword TTYPE384 has different values: E a> PC2_3 E ? ^ E b> PC2_1 E ? ^ E Keyword TTYPE385 has different values: E a> PC3_1 E b> PC2_2 E Keyword TTYPE386 has different values: E a> PC3_2 E b> PC2_3 E Keyword TTYPE387 has different values: E a> PC3_3 E ? ^ E b> PC3_1 E ? ^ E Keyword TTYPE388 has different values: E a> CD1_1 E b> PC3_2 E Keyword TTYPE389 has different values: E a> CD1_2 E b> PC3_3 E Keyword TTYPE390 has different values: E a> CD2_1 E ? ^ E b> CD1_1 E ? ^ E Keyword TTYPE391 has different values: E a> CD2_2 E ? ^ E b> CD1_2 E ? ^ E Keyword TTYPE392 has different values: E a> S_REGION E b> CD2_1 E Keyword TTYPE393 has different values: E a> WAVSTART E b> CD2_2 E Keyword TTYPE394 has different values: E a> WAVEND E b> S_REGION E Keyword TTYPE395 has different values: E a> DISPAXIS E b> WAVSTART E Keyword TTYPE396 has different values: E a> SPORDER E b> WAVEND E Keyword TTYPE397 has different values: E a> V2_REF E b> DISPAXIS E Keyword TTYPE398 has different values: E a> V3_REF E b> SPORDER E Keyword TTYPE399 has different values: E a> VPARITY E b> V2_REF E Keyword TTYPE400 has different values: E a> V3I_YANG E b> V3_REF E Keyword TTYPE401 has different values: E a> RA_REF E b> VPARITY E Keyword TTYPE402 has different values: E a> DEC_REF E b> V3I_YANG E Keyword TTYPE403 has different values: E a> ROLL_REF E b> RA_REF E E Data contains differences: E Tables have different number of columns: E a: 403 E b: 405 E Extra column R_FRIFRQ of format D in b E Extra column S_RESFRI of format D in b E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f381adcd550>.identical /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:38: AssertionError ______________________ test_nirspec_mos_spec3[s00482-x1d] ______________________ run_pipeline = {'input': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pyt...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00482_nirspec_f170lp-g235m_x1d.fits'} suffix = 'x1d', source_id = 's00482' fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 5.1 E a: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s00482_nirspec_f170lp-g235m_x1d.fits E b: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s00482_nirspec_f170lp-g235m_x1d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (EXTRACT1D, 1): E E Headers contain differences: E Keyword SHUTSTA has different values: E a> 11x E b> x11 E Keyword SRCXPOS has different values: E a> -0.383899986743927 E b> -0.3514000177383423 E Keyword SRCYPOS has different values: E a> 1.644999980926514 E b> -0.3780999779701233 E E Data contains differences: E Column FLUX data differs in row 512: E a> 65518678.729559414 E b> 65517679.87625352 E Column FLUX data differs in row 520: E a> 67463274.83689904 E b> 67462073.28740132 E Column FLUX data differs in row 524: E a> 63979431.357598074 E b> 63978765.844502166 E Column FLUX data differs in row 528: E a> 62100080.62661202 E b> 62099447.1201573 E Column FLUX data differs in row 530: E a> 66687459.123429336 E b> 66686748.903026186 E Column FLUX data differs in row 547: E a> 79914234.06109816 E b> 79913248.00924532 E Column FLUX data differs in row 778: E a> 28850070.10779329 E b> 28848369.582927685 E Column FLUX data differs in row 971: E a> 44303514.186343834 E b> 44303025.841747835 E Column FLUX data differs in row 1130: E a> 27928170.466189384 E b> 27927799.94685922 E Column FLUX_VAR_POISSON data differs in row 482: E a> 1008359662.9282081 E b> 1008344609.5026777 E ...16 additional difference(s) found. E ... E 26 different table data element(s) found (0.11% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f383939e4f0>.identical /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:38: AssertionError ______________________ test_nirspec_mos_spec3[s02315-s2d] ______________________ run_pipeline = {'input': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pyt...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s02315_nirspec_f170lp-g235m_s2d.fits'} suffix = 's2d', source_id = 's02315' fitsdiff_default_kwargs = {'atol': 1e-05, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 5.1 E a: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s02315_nirspec_f170lp-g235m_s2d.fits E b: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s02315_nirspec_f170lp-g235m_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 1e-05 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword SHUTSTA has different values: E a> 11x E b> x11 E Keyword SRCXPOS has different values: E a> -0.383899986743927 E b> -0.3514000177383423 E Keyword SRCYPOS has different values: E a> 1.644999980926514 E b> -0.3780999779701233 E E Data contains differences: E Data differs at [134, 6]: E a> 0.8290226 E b> 0.82934254 E Data differs at [135, 6]: E a> 1.420005 E b> 1.4202758 E Data differs at [136, 6]: E a> 1.7680572 E b> 1.768268 E Data differs at [236, 6]: E a> 0.89080334 E b> 0.8911224 E Data differs at [237, 6]: E a> 1.7333281 E b> 1.7336864 E Data differs at [238, 6]: E a> 2.1571372 E ? ^ - E b> 2.1574237 E ? ^^ E Data differs at [348, 6]: E a> 1.3607224 E b> 1.3610481 E Data differs at [349, 6]: E a> 1.9901901 E b> 1.9905708 E Data differs at [350, 6]: E a> 2.5105054 E b> 2.5108113 E Data differs at [474, 6]: E a> 1.8324301 E b> 1.8326571 E ... E 21 different pixels found (0.05% different). E E Extension HDU 2 (ERR, 1): E E Data contains differences: E Data differs at [814, 3]: E a> 7.2939143 E b> 7.292935 E Data differs at [819, 4]: E a> 57.185074 E b> 57.191124 E Data differs at [356, 5]: E a> 62.530716 E b> 62.540833 E Data differs at [357, 5]: E a> 25.85721 E b> 25.863117 E Data differs at [1054, 5]: E a> 117.90514 E b> 117.92234 E Data differs at [1055, 5]: E a> 56.821426 E b> 56.831135 E Data differs at [1056, 5]: E a> 9.109555 E b> 9.110574 E Data differs at [1057, 5]: E a> 9.387365 E ? ^ - E b> 9.38835 E ? ^ E Data differs at [473, 6]: E a> 7.742316 E b> 7.7442603 E Data differs at [474, 6]: E a> 12.089033 E b> 12.092265 E ... E 138 different pixels found (0.34% different). E E Extension HDU 3 (WHT, 1): E E Data contains differences: E Data differs at [52, 2]: E a> 2.0437586 E b> 2.0435033 E Data differs at [53, 2]: E a> 2.427431 E b> 2.4270368 E Data differs at [54, 2]: E a> 1.7796459 E b> 1.7792058 E Data differs at [55, 2]: E a> 0.85061747 E b> 0.85018283 E Data differs at [56, 2]: E a> 0.0801094 E b> 0.07993581 E Data differs at [148, 2]: E a> 3.0700672 E b> 3.0696752 E Data differs at [149, 2]: E a> 2.537709 E b> 2.5372808 E Data differs at [150, 2]: E a> 1.7710763 E b> 1.7706277 E Data differs at [151, 2]: E a> 0.3381698 E b> 0.33804235 E Data differs at [152, 2]: E a> 0.03452102 E b> 0.03439661 E ... E 149 different pixels found (0.37% different). E E Extension HDU 5 (VAR_POISSON, 1): E E Data contains differences: E Data differs at [491, 28]: E a> 0.06439006 E b> 0.064414054 E 1 different pixels found (0.00% different). E E Extension HDU 6 (VAR_RNOISE, 1): E E Data contains differences: E Data differs at [152, 2]: E a> 0.27292347 E b> 0.27309582 E Data differs at [796, 13]: E a> 0.0037940233 E b> 0.0037640801 E Data differs at [491, 28]: E a> 0.11344154 E ? - E b> 0.113413654 E ? ++ E 3 different pixels found (0.01% different). E E Extension HDU 7 (VAR_FLAT, 1): E E Data contains differences: E Data differs at [256, 2]: E a> 25828.791 E b> 25825.15 E Data differs at [831, 2]: E a> 185925.47 E b> 185891.39 E Data differs at [1097, 2]: E a> 85832.51 E b> 85821.375 E Data differs at [814, 3]: E a> 53.007645 E b> 52.993355 E Data differs at [250, 4]: E a> 946.41504 E b> 946.52203 E Data differs at [364, 4]: E a> 1477.6146 E b> 1477.7909 E Data differs at [491, 4]: E a> 1205.5356 E b> 1205.7498 E Data differs at [492, 4]: E a> 1519.2799 E b> 1519.5072 E Data differs at [493, 4]: E a> 1746.5989 E b> 1746.8087 E Data differs at [494, 4]: E a> 2124.4631 E ? - ^ E b> 2124.6833 E ? + ^ E ... E 356 different pixels found (0.89% different). E E Extension HDU 8 (HDRTAB, 1): E E Headers contain differences: E Headers have different number of cards: E a: 816 E b: 820 E Extra keyword 'TTYPE404' in b: 'DEC_REF' E Extra keyword 'TTYPE405' in b: 'ROLL_REF' E Keyword TFIELDS has different values: E a> 403 E b> 405 E Keyword TTYPE263 has different values: E a> R_GAIN E b> R_FRIFRQ E Keyword TTYPE264 has different values: E a> R_IFUFOR E b> R_GAIN E Keyword TTYPE265 has different values: E a> R_IFUPOS E ? ^ ^ E b> R_IFUFOR E ? ^ ^ E Keyword TTYPE266 has different values: E a> R_IFUSLI E ? -- E b> R_IFUPOS E ? ++ E Keyword TTYPE267 has different values: E a> R_IPC E b> R_IFUSLI E Keyword TTYPE268 has different values: E a> R_LASTFR E b> R_IPC E Keyword TTYPE269 has different values: E a> R_LINEAR E b> R_LASTFR E Keyword TTYPE270 has different values: E a> R_MASK E b> R_LINEAR E Keyword TTYPE271 has different values: E a> R_MSA E b> R_MASK E Keyword TTYPE272 has different values: E a> R_OTE E b> R_MSA E Keyword TTYPE273 has different values: E a> R_PTHLOS E b> R_OTE E Keyword TTYPE274 has different values: E a> R_PERSAT E b> R_PTHLOS E Keyword TTYPE275 has different values: E a> R_PHOTOM E b> R_PERSAT E Keyword TTYPE276 has different values: E a> R_PSFMAS E b> R_PHOTOM E Keyword TTYPE277 has different values: E a> R_READNO E b> R_PSFMAS E Keyword TTYPE278 has different values: E a> R_REFPIX E b> R_READNO E Keyword TTYPE279 has different values: E a> R_REGION E b> R_REFPIX E Keyword TTYPE280 has different values: E a> R_RESAMP E b> R_REGION E Keyword TTYPE281 has different values: E a> R_RESOL E b> R_RESAMP E Keyword TTYPE282 has different values: E a> R_RESET E b> R_RESOL E Keyword TTYPE283 has different values: E a> R_RSCD E b> R_RESET E Keyword TTYPE284 has different values: E a> R_SATURA E b> R_RSCD E Keyword TTYPE285 has different values: E a> R_SPKERN E b> R_SATURA E Keyword TTYPE286 has different values: E a> R_SPPROF E b> R_SPKERN E Keyword TTYPE287 has different values: E a> R_SPTRAC E b> R_SPPROF E Keyword TTYPE288 has different values: E a> R_SPCWCS E b> R_SPTRAC E Keyword TTYPE289 has different values: E a> R_STRAY E b> R_SPCWCS E Keyword TTYPE290 has different values: E a> R_SUPERB E b> R_STRAY E Keyword TTYPE291 has different values: E a> R_THRPUT E b> R_SUPERB E Keyword TTYPE292 has different values: E a> R_TRPDEN E b> R_THRPUT E Keyword TTYPE293 has different values: E a> R_TRPPAR E b> R_TRPDEN E Keyword TTYPE294 has different values: E a> R_TSPHOT E b> R_TRPPAR E Keyword TTYPE295 has different values: E a> R_V2V3 E b> R_TSPHOT E Keyword TTYPE296 has different values: E a> R_WAVCOR E b> R_V2V3 E Keyword TTYPE297 has different values: E a> R_WAVRAN E ? -- E b> R_WAVCOR E ? ++ E Keyword TTYPE298 has different values: E a> R_WAVMAP E ? ^ ^ E b> R_WAVRAN E ? ^ ^ E Keyword TTYPE299 has different values: E a> S_PSFALI E b> R_WAVMAP E Keyword TTYPE300 has different values: E a> S_AMIANA E b> S_PSFALI E Keyword TTYPE301 has different values: E a> S_AMIAVG E ? ^^ E b> S_AMIANA E ? ^^ E Keyword TTYPE302 has different values: E a> S_AMINOR E b> S_AMIAVG E Keyword TTYPE303 has different values: E a> S_WCS E b> S_AMINOR E Keyword TTYPE304 has different values: E a> S_MTWCS E ? -- E b> S_WCS E Keyword TTYPE305 has different values: E a> S_BKDSUB E b> S_MTWCS E Keyword TTYPE306 has different values: E a> S_BARSHA E b> S_BKDSUB E Keyword TTYPE307 has different values: E a> S_COMB1D E b> S_BARSHA E Keyword TTYPE308 has different values: E a> S_IFUCUB E b> S_COMB1D E Keyword TTYPE309 has different values: E a> S_DARK E b> S_IFUCUB E Keyword TTYPE310 has different values: E a> S_DQINIT E b> S_DARK E Keyword TTYPE311 has different values: E a> S_TELEMI E b> S_DQINIT E Keyword TTYPE312 has different values: E a> S_ERRINI E b> S_TELEMI E Keyword TTYPE313 has different values: E a> S_EXTR1D E b> S_ERRINI E Keyword TTYPE314 has different values: E a> S_EXTR2D E ? ^ E b> S_EXTR1D E ? ^ E Keyword TTYPE315 has different values: E a> S_FRSTFR E b> S_EXTR2D E Keyword TTYPE316 has different values: E a> S_FLAT E b> S_FRSTFR E Keyword TTYPE317 has different values: E a> S_FRINGE E b> S_FLAT E Keyword TTYPE318 has different values: E a> S_GANSCL E b> S_FRINGE E Keyword TTYPE319 has different values: E a> S_GRPSCL E ? ^^ E b> S_GANSCL E ? ^^ E Keyword TTYPE320 has different values: E a> S_GUICDS E b> S_GRPSCL E Keyword TTYPE321 has different values: E a> S_IMPRNT E b> S_GUICDS E Keyword TTYPE322 has different values: E a> S_IPC E b> S_IMPRNT E Keyword TTYPE323 has different values: E a> S_JUMP E b> S_IPC E Keyword TTYPE324 has different values: E a> S_KLIP E b> S_JUMP E Keyword TTYPE325 has different values: E a> S_LASTFR E b> S_KLIP E Keyword TTYPE326 has different values: E a> S_LINEAR E b> S_LASTFR E Keyword TTYPE327 has different values: E a> S_MSBSUB E b> S_LINEAR E Keyword TTYPE328 has different values: E a> S_MRSMAT E b> S_MSBSUB E Keyword TTYPE329 has different values: E a> S_MSAFLG E b> S_MRSMAT E Keyword TTYPE330 has different values: E a> S_OUTLIR E b> S_MSAFLG E Keyword TTYPE331 has different values: E a> S_PTHLOS E b> S_OUTLIR E Keyword TTYPE332 has different values: E a> S_PERSIS E b> S_PTHLOS E Keyword TTYPE333 has different values: E a> S_PHOTOM E b> S_PERSIS E Keyword TTYPE334 has different values: E a> S_RAMP E b> S_PHOTOM E Keyword TTYPE335 has different values: E a> S_REFPIX E b> S_RAMP E Keyword TTYPE336 has different values: E a> S_RESAMP E b> S_REFPIX E Keyword TTYPE337 has different values: E a> S_RESET E b> S_RESAMP E Keyword TTYPE338 has different values: E a> S_RSCD E b> S_RESFRI E Keyword TTYPE339 has different values: E a> S_SATURA E b> S_RESET E Keyword TTYPE340 has different values: E a> S_SKYMAT E b> S_RSCD E Keyword TTYPE341 has different values: E a> S_SRCCAT E b> S_SATURA E Keyword TTYPE342 has different values: E a> S_SRCTYP E b> S_SKYMAT E Keyword TTYPE343 has different values: E a> S_PSFSTK E b> S_SRCCAT E Keyword TTYPE344 has different values: E a> S_STRAY E b> S_SRCTYP E Keyword TTYPE345 has different values: E a> S_SUPERB E b> S_PSFSTK E Keyword TTYPE346 has different values: E a> S_TSPHOT E b> S_STRAY E Keyword TTYPE347 has different values: E a> S_TWKREG E b> S_SUPERB E Keyword TTYPE348 has different values: E a> S_WAVCOR E b> S_TSPHOT E Keyword TTYPE349 has different values: E a> S_WFSCOM E b> S_TWKREG E Keyword TTYPE350 has different values: E a> S_WHTLIT E b> S_WAVCOR E Keyword TTYPE351 has different values: E a> BKGMETH E b> S_WFSCOM E Keyword TTYPE352 has different values: E a> BKGLEVEL E b> S_WHTLIT E Keyword TTYPE353 has different values: E a> BKGSUB E b> BKGMETH E Keyword TTYPE354 has different values: E a> BUNIT E b> BKGLEVEL E Keyword TTYPE355 has different values: E a> PHOTMJSR E b> BKGSUB E Keyword TTYPE356 has different values: E a> PHOTUJA2 E b> BUNIT E Keyword TTYPE357 has different values: E a> PIXAR_SR E b> PHOTMJSR E Keyword TTYPE358 has different values: E a> PIXAR_A2 E b> PHOTUJA2 E Keyword TTYPE359 has different values: E a> RADESYS E b> PIXAR_SR E Keyword TTYPE360 has different values: E a> RA_V1 E b> PIXAR_A2 E Keyword TTYPE361 has different values: E a> DEC_V1 E b> RADESYS E Keyword TTYPE362 has different values: E a> PA_V3 E b> RA_V1 E Keyword TTYPE363 has different values: E a> WCSAXES E b> DEC_V1 E Keyword TTYPE364 has different values: E a> CRPIX1 E b> PA_V3 E Keyword TTYPE365 has different values: E a> CRPIX2 E b> WCSAXES E Keyword TTYPE366 has different values: E a> CRPIX3 E ? ^ E b> CRPIX1 E ? ^ E Keyword TTYPE367 has different values: E a> CRVAL1 E b> CRPIX2 E Keyword TTYPE368 has different values: E a> CRVAL2 E b> CRPIX3 E Keyword TTYPE369 has different values: E a> CRVAL3 E ? ^ E b> CRVAL1 E ? ^ E Keyword TTYPE370 has different values: E a> CTYPE1 E b> CRVAL2 E Keyword TTYPE371 has different values: E a> CTYPE2 E b> CRVAL3 E Keyword TTYPE372 has different values: E a> CTYPE3 E ? ^ E b> CTYPE1 E ? ^ E Keyword TTYPE373 has different values: E a> CUNIT1 E b> CTYPE2 E Keyword TTYPE374 has different values: E a> CUNIT2 E b> CTYPE3 E Keyword TTYPE375 has different values: E a> CUNIT3 E ? ^ E b> CUNIT1 E ? ^ E Keyword TTYPE376 has different values: E a> CDELT1 E b> CUNIT2 E Keyword TTYPE377 has different values: E a> CDELT2 E b> CUNIT3 E Keyword TTYPE378 has different values: E a> CDELT3 E ? ^ E b> CDELT1 E ? ^ E Keyword TTYPE379 has different values: E a> PC1_1 E b> CDELT2 E Keyword TTYPE380 has different values: E a> PC1_2 E b> CDELT3 E Keyword TTYPE381 has different values: E a> PC1_3 E ? ^ E b> PC1_1 E ? ^ E Keyword TTYPE382 has different values: E a> PC2_1 E b> PC1_2 E Keyword TTYPE383 has different values: E a> PC2_2 E b> PC1_3 E Keyword TTYPE384 has different values: E a> PC2_3 E ? ^ E b> PC2_1 E ? ^ E Keyword TTYPE385 has different values: E a> PC3_1 E b> PC2_2 E Keyword TTYPE386 has different values: E a> PC3_2 E b> PC2_3 E Keyword TTYPE387 has different values: E a> PC3_3 E ? ^ E b> PC3_1 E ? ^ E Keyword TTYPE388 has different values: E a> CD1_1 E b> PC3_2 E Keyword TTYPE389 has different values: E a> CD1_2 E b> PC3_3 E Keyword TTYPE390 has different values: E a> CD2_1 E ? ^ E b> CD1_1 E ? ^ E Keyword TTYPE391 has different values: E a> CD2_2 E ? ^ E b> CD1_2 E ? ^ E Keyword TTYPE392 has different values: E a> S_REGION E b> CD2_1 E Keyword TTYPE393 has different values: E a> WAVSTART E b> CD2_2 E Keyword TTYPE394 has different values: E a> WAVEND E b> S_REGION E Keyword TTYPE395 has different values: E a> DISPAXIS E b> WAVSTART E Keyword TTYPE396 has different values: E a> SPORDER E b> WAVEND E Keyword TTYPE397 has different values: E a> V2_REF E b> DISPAXIS E Keyword TTYPE398 has different values: E a> V3_REF E b> SPORDER E Keyword TTYPE399 has different values: E a> VPARITY E b> V2_REF E Keyword TTYPE400 has different values: E a> V3I_YANG E b> V3_REF E Keyword TTYPE401 has different values: E a> RA_REF E b> VPARITY E Keyword TTYPE402 has different values: E a> DEC_REF E b> V3I_YANG E Keyword TTYPE403 has different values: E a> ROLL_REF E b> RA_REF E E Data contains differences: E Tables have different number of columns: E a: 403 E b: 405 E Extra column R_FRIFRQ of format D in b E Extra column S_RESFRI of format D in b E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f37e8bcc9a0>.identical /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:38: AssertionError ______________________ test_nirspec_mos_spec3[s02315-x1d] ______________________ run_pipeline = {'input': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pyt...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s02315_nirspec_f170lp-g235m_x1d.fits'} suffix = 'x1d', source_id = 's02315' fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 5.1 E a: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s02315_nirspec_f170lp-g235m_x1d.fits E b: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s02315_nirspec_f170lp-g235m_x1d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (EXTRACT1D, 1): E E Headers contain differences: E Keyword SHUTSTA has different values: E a> 11x E b> x11 E Keyword SRCXPOS has different values: E a> -0.383899986743927 E b> -0.3514000177383423 E Keyword SRCYPOS has different values: E a> 1.644999980926514 E b> -0.3780999779701233 E E Data contains differences: E Column FLUX data differs in row 82: E a> 6003824.355168035 E b> 6003763.984073885 E Column FLUX data differs in row 85: E a> 6324987.915199017 E b> 6324923.399806721 E Column FLUX data differs in row 88: E a> 5987390.014663106 E b> 5987328.728166176 E Column FLUX data differs in row 89: E a> 6054374.671832193 E b> 6054311.8512723595 E Column FLUX data differs in row 90: E a> 6403920.720767928 E b> 6403848.136484157 E Column FLUX data differs in row 91: E a> 6256856.04516184 E b> 6256788.062368287 E Column FLUX data differs in row 92: E a> 6177578.3613848025 E b> 6177508.611785014 E Column FLUX data differs in row 93: E a> 6410638.86511256 E b> 6410564.479971072 E Column FLUX data differs in row 94: E a> 6432365.852844669 E b> 6432288.91317267 E Column FLUX data differs in row 95: E a> 6850368.697254455 E b> 6850283.515668709 E ...732 additional difference(s) found. E ... E 742 different table data element(s) found (2.87% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f385201acd0>.identical /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:38: AssertionError =============================== warnings summary =============================== miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_ifu_spec2.py::test_photom /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/photom/photom.py:326: RuntimeWarning: overflow encountered in multiply self.input.var_poisson *= sens2d**2 miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_ifu_spec2.py::test_photom /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/photom/photom.py:327: RuntimeWarning: overflow encountered in multiply self.input.var_rnoise *= sens2d**2 miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_irs2_detector1.py::test_nirspec_irs2_detector1[dq_init] miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_irs2_detector1.py::test_nirspec_irs2_detector1[dq_init] miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_verify.py::test_verify_detector1[dq_init] miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_verify.py::test_verify_detector1[dq_init] /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/stdatamodels/validate.py:38: ValidationWarning: While validating meta.exposure.readpatt the following error occurred: 'ALLIRS2' is not one of ['ACQ1', 'ACQ2', 'BRIGHT1', 'BRIGHT2', 'DEEP2', 'DEEP8', 'FAST', 'FASTGRPAVG', 'FASTGRPAVG8', 'FASTGRPAVG16', 'FASTGRPAVG32', 'FASTGRPAVG64', 'FASTR1', 'FASTR100', 'FGS', 'FGS60', 'FGS8370', 'FGS840', 'FGSRAPID', 'FINEGUIDE', 'ID', 'MEDIUM2', 'MEDIUM8', 'NIS', 'NISRAPID', 'NRS', 'NRSIRS2', 'NRSN16R4', 'NRSN32R8', 'NRSN8R2', 'NRSRAPID', 'NRSIRS2RAPID', 'NRSRAPIDD1', 'NRSRAPIDD2', 'NRSRAPIDD6', 'NRSSLOW', 'RAPID', 'SHALLOW2', 'SHALLOW4', 'SLOW', 'SLOWR1', 'TRACK', 'ANY', 'N/A'] Failed validating 'enum' in schema: OrderedDict([('title', 'Readout pattern'), ('type', 'string'), ('enum', ['ACQ1', 'ACQ2', 'BRIGHT1', 'BRIGHT2', 'DEEP2', 'DEEP8', 'FAST', 'FASTGRPAVG', 'FASTGRPAVG8', 'FASTGRPAVG16', 'FASTGRPAVG32', 'FASTGRPAVG64', 'FASTR1', 'FASTR100', 'FGS', 'FGS60', 'FGS8370', 'FGS840', 'FGSRAPID', 'FINEGUIDE', 'ID', 'MEDIUM2', 'MEDIUM8', 'NIS', 'NISRAPID', 'NRS', 'NRSIRS2', 'NRSN16R4', 'NRSN32R8', 'NRSN8R2', 'NRSRAPID', 'NRSIRS2RAPID', 'NRSRAPIDD1', 'NRSRAPIDD2', 'NRSRAPIDD6', 'NRSSLOW', 'RAPID', 'SHALLOW2', 'SHALLOW4', 'SLOW', 'SLOWR1', 'TRACK', 'ANY', 'N/A']), ('fits_ke ... warnings.warn(errmsg, ValidationWarning) miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_irs2_detector1.py::test_nirspec_irs2_detector1[dq_init] /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/stcal/jump/twopoint_difference.py:154: RuntimeWarning: All-NaN slice encountered max_ratio = np.nanmax(ratio, axis=0) miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_irs2_detector1.py::test_nirspec_irs2_detector1[dq_init] miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_subarray.py::test_nirspec_detector1[group_scale] miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_verify.py::test_verify_detector1[dq_init] /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/stcal/ramp_fitting/ols_fit.py:1089: RuntimeWarning: invalid value encountered in multiply var_p4[num_int, :, :, :] *= (segs_4[num_int, :, :, :] > 0) miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_lamp_ifu_spec2.py::test_nirspec_lamp_ifu_spec2[assign_wcs] /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/modeling/bounding_box.py:83: RuntimeWarning: Invalid interval: upper bound 2047.5 is strictly less than lower bound 2373.0684100073468. warnings.warn(f"Invalid interval: upper bound {upper} " miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_lamp_ifu_spec2.py::test_nirspec_lamp_ifu_spec2[assign_wcs] /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/modeling/bounding_box.py:83: RuntimeWarning: Invalid interval: upper bound 2047.5 is strictly less than lower bound 2094.2760207141832. warnings.warn(f"Invalid interval: upper bound {upper} " miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_lamp_ifu_spec2.py::test_nirspec_lamp_ifu_spec2[assign_wcs] /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/modeling/bounding_box.py:83: RuntimeWarning: Invalid interval: upper bound 2047.5 is strictly less than lower bound 2293.033835983786. warnings.warn(f"Invalid interval: upper bound {upper} " miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_masterbkg_rerun miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_masterbkg_rerun miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_masterbkg_corrpars miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg[cal] miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg_user[cal] miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec2_steps.py::test_photom_inverse /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/photom/photom.py:821: RuntimeWarning: invalid value encountered in divide slit.data /= conversion miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_masterbkg_rerun miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_masterbkg_rerun miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_masterbkg_corrpars miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg[cal] miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg_user[cal] /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/photom/photom.py:824: RuntimeWarning: overflow encountered in multiply slit.var_poisson *= conversion**2 miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_masterbkg_rerun miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_masterbkg_rerun miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_masterbkg_corrpars miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg[cal] miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg_user[cal] /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/photom/photom.py:826: RuntimeWarning: overflow encountered in multiply slit.var_rnoise *= conversion**2 miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_masterbkg_rerun miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_masterbkg_rerun miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_masterbkg_corrpars miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg[cal] miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg_user[cal] /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/photom/photom.py:828: RuntimeWarning: overflow encountered in multiply slit.var_flat *= conversion**2 miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg[cal] /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/modeling/bounding_box.py:83: RuntimeWarning: Invalid interval: upper bound 2047.5 is strictly less than lower bound 2574.5385337889334. warnings.warn(f"Invalid interval: upper bound {upper} " miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg[cal] /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/modeling/bounding_box.py:83: RuntimeWarning: Invalid interval: upper bound 2047.5 is strictly less than lower bound 2295.8704061902636. warnings.warn(f"Invalid interval: upper bound {upper} " miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg[cal] /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/modeling/bounding_box.py:83: RuntimeWarning: Invalid interval: upper bound 2047.5 is strictly less than lower bound 2498.40501238016. warnings.warn(f"Invalid interval: upper bound {upper} " miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg_user[cal] /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/modeling/bounding_box.py:83: RuntimeWarning: Invalid interval: upper bound 2047.5 is strictly less than lower bound 2373.0684100073477. warnings.warn(f"Invalid interval: upper bound {upper} " miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg_user[cal] /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/modeling/bounding_box.py:83: RuntimeWarning: Invalid interval: upper bound 2047.5 is strictly less than lower bound 2094.2760207141846. warnings.warn(f"Invalid interval: upper bound {upper} " miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg_user[cal] /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/modeling/bounding_box.py:83: RuntimeWarning: Invalid interval: upper bound 2047.5 is strictly less than lower bound 2293.0338359837865. warnings.warn(f"Invalid interval: upper bound {upper} " miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg_user[cal] /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/photom/photom.py:821: RuntimeWarning: divide by zero encountered in divide slit.data /= conversion miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg_user[cal] /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/barshadow/bar_shadow.py:82: RuntimeWarning: overflow encountered in divide slitlet.var_poisson /= correction.data**2 miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg_user[cal] /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/barshadow/bar_shadow.py:85: RuntimeWarning: overflow encountered in divide slitlet.var_flat /= correction.data**2 miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg_user[cal] /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/flatfield/flat_field.py:434: RuntimeWarning: invalid value encountered in multiply slit.var_flat = slit.data ** 2 / flat_data_squared * slit_flat.err ** 2 miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg_user[cal] /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/photom/photom.py:819: RuntimeWarning: invalid value encountered in multiply slit.data *= conversion miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg_user[cal] miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg_user[cal] miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg_user[cal] /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/resample/resample.py:308: RuntimeWarning: divide by zero encountered in reciprocal output_variance = np.reciprocal(inverse_variance_sum) miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec2.py::test_nirspec_mos_spec2[assign_wcs] /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/modeling/bounding_box.py:83: RuntimeWarning: Invalid interval: upper bound 2047.5 is strictly less than lower bound 2359.7242016196183. warnings.warn(f"Invalid interval: upper bound {upper} " miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec2.py::test_nirspec_mos_spec2[assign_wcs] /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/modeling/bounding_box.py:83: RuntimeWarning: Invalid interval: upper bound 2047.5 is strictly less than lower bound 2080.923947098485. warnings.warn(f"Invalid interval: upper bound {upper} " miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec2.py::test_nirspec_mos_spec2[assign_wcs] /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/modeling/bounding_box.py:83: RuntimeWarning: Invalid interval: upper bound 2047.5 is strictly less than lower bound 2279.431243693829. warnings.warn(f"Invalid interval: upper bound {upper} " miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_subarray.py::test_nirspec_detector1[group_scale] miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_verify.py::test_verify_detector1[dq_init] /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/stcal/ramp_fitting/ols_fit.py:1388: RuntimeWarning: divide by zero encountered in divide var_p2 = 1 / (s_inv_var_p3.sum(axis=0)) miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_wcs.py::test_nirspec_ifu_wcs[nrs1_f170lp] /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/datamodels/util.py:234: NoTypeWarning: model_type not found. Opening jw00011001001_01120_00001_nrs1_rate.fits as a ImageModel warnings.warn(f"model_type not found. Opening {file_name} as a {class_name}", miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_wcs.py::test_nirspec_ifu_wcs[nrs1_opaque] /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/datamodels/util.py:234: NoTypeWarning: model_type not found. Opening jw00011001001_01120_00002_nrs1_rate.fits as a ImageModel warnings.warn(f"model_type not found. Opening {file_name} as a {class_name}", miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_wcs.py::test_nirspec_ifu_wcs[nrs1_opaque] /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/datamodels/util.py:234: NoTypeWarning: model_type not found. Opening /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_wcs_nrs1_opaq0/truth/jw00011001001_01120_00002_nrs1_assign_wcs.fits as a ImageModel warnings.warn(f"model_type not found. Opening {file_name} as a {class_name}", -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html - generated html file: file:///internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpq9gor8nz/regtest_report.html - =========================== short test summary info ============================ FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_exceptions.py::test_nirspec_nrs2_nodata_strun FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[fullframe-s2d] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[S400A1-subarray-s2d] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[ALLSLITS-subarray-s2d] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec3.py::test_nirspec_fs_spec3[s2d] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec3.py::test_nirspec_fs_spec3[x1d] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_ifu_spec2.py::test_photom FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_lamp_fs_spec2.py::test_nirspec_lamp_fs_spec2[s2d] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_ifu_mbkg_nod[on-source] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_ifu_mbkg_nod[off-source] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_ifu_mbkg_nod[on-source2d] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00000-s2d] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00227-s2d] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00227-x1d] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00279-s2d] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00279-x1d] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00443-s2d] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00443-x1d] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00482-s2d] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00482-x1d] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s02315-s2d] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s02315-x1d] = 22 failed, 133 passed, 18 skipped, 408 deselected, 56 warnings in 3256.54s (0:54:16) =
HTML(html_report)
Report generated on 06-Oct-2022 at 05:14:43 by pytest-html v3.1.1
| BUILD_ID | 124 |
| BUILD_NUMBER | 124 |
| BUILD_TAG | jenkins-Notebooks-jwst_validation_notebooks_spacetelescope-124 |
| BUILD_URL | https://plwishmaster.stsci.edu:8081/job/Notebooks/job/jwst_validation_notebooks_spacetelescope/124/ |
| EXECUTOR_NUMBER | 19 |
| GIT_BRANCH | origin/master |
| GIT_COMMIT | bde8f02589041fbfae28bb9206e1fbb30578e7dc |
| GIT_URL | https://github.com/spacetelescope/jwst_validation_notebooks |
| JENKINS_URL | https://plwishmaster.stsci.edu:8081/ |
| JOB_NAME | Notebooks/jwst_validation_notebooks_spacetelescope |
| NODE_NAME | pljwvalnb.stsci.edu |
| Packages | {"pluggy": "1.0.0", "py": "1.11.0", "pytest": "7.1.3"} |
| Platform | Linux-3.10.0-1160.76.1.el7.x86_64-x86_64-with-glibc2.17 |
| Plugins | {"asdf": "2.13.0", "ci-watson": "0.6.1", "cov": "3.0.0", "doctestplus": "0.12.0", "forked": "1.4.0", "html": "3.1.1", "jwst": "1.7.2", "metadata": "2.0.2", "openfiles": "0.5.0", "requests-mock": "1.10.0", "xdist": "2.5.0"} |
| Python | 3.9.13 |
| WORKSPACE | /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope |
155 tests ran in 3256.11 seconds.
(Un)check the boxes to filter the results.
133 passed, 18 skipped, 22 failed, 0 errors, 0 expected failures, 0 unexpected passes| Result | Test | Duration | Links |
|---|---|---|---|
| No results found. Try to check the filters | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_exceptions.py::test_nirspec_nrs2_nodata_strun | 0.59 | |
|
_jail = '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_nrs2_nodata_strun0' rtdata = {'input': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pyt...ut': None, 'remote_results_path': None, 'test_name': None, 'traceback': None, 'truth': None, 'truth_remote': None} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} caplog = <_pytest.logging.LogCaptureFixture object at 0x7f38523bae80> @pytest.mark.bigdata def test_nirspec_nrs2_nodata_strun(_jail, rtdata, fitsdiff_default_kwargs, caplog): """ Test of calwebb_spec2 pipeline performed on NIRSpec IFU exposure that has a filter/grating combination that produces no data on the NRS2 detector. Pipeline should return with non-zero exit status. """ # Get the input file rtdata.get_data('nirspec/ifu/jw84700006001_02101_00001_nrs2_rate.fits') # Call the Spec2Pipeline cmd = [ 'strun', 'jwst.pipeline.Spec2Pipeline', rtdata.input] > status = subprocess.run(cmd) /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_exceptions.py:104: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/subprocess.py:505: in run with Popen(*popenargs, **kwargs) as process: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/subprocess.py:951: in __init__ self._execute_child(args, executable, preexec_fn, close_fds, _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <Popen: returncode: 255 args: ['strun', 'jwst.pipeline.Spec2Pipeline', '/int...> args = ['strun', 'jwst.pipeline.Spec2Pipeline', '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_nrs2_nodata_strun0/jw84700006001_02101_00001_nrs2_rate.fits'] executable = b'strun', preexec_fn = None, close_fds = True, pass_fds = () cwd = None, env = None, startupinfo = None, creationflags = 0, shell = False p2cread = -1, p2cwrite = -1, c2pread = -1, c2pwrite = -1, errread = -1 errwrite = -1, restore_signals = True, gid = None, gids = None, uid = None umask = -1, start_new_session = False def _execute_child(self, args, executable, preexec_fn, close_fds, pass_fds, cwd, env, startupinfo, creationflags, shell, p2cread, p2cwrite, c2pread, c2pwrite, errread, errwrite, restore_signals, gid, gids, uid, umask, start_new_session): """Execute program (POSIX version)""" if isinstance(args, (str, bytes)): args = [args] elif isinstance(args, os.PathLike): if shell: raise TypeError('path-like args is not allowed when ' 'shell is true') args = [args] else: args = list(args) if shell: # On Android the default shell is at '/system/bin/sh'. unix_shell = ('/system/bin/sh' if hasattr(sys, 'getandroidapilevel') else '/bin/sh') args = [unix_shell, "-c"] + args if executable: args[0] = executable if executable is None: executable = args[0] sys.audit("subprocess.Popen", executable, args, cwd, env) if (_USE_POSIX_SPAWN and os.path.dirname(executable) and preexec_fn is None and not close_fds and not pass_fds and cwd is None and (p2cread == -1 or p2cread > 2) and (c2pwrite == -1 or c2pwrite > 2) and (errwrite == -1 or errwrite > 2) and not start_new_session and gid is None and gids is None and uid is None and umask < 0): self._posix_spawn(args, executable, env, restore_signals, p2cread, p2cwrite, c2pread, c2pwrite, errread, errwrite) return orig_executable = executable # For transferring possible exec failure from child to parent. # Data format: "exception name:hex errno:description" # Pickle is not used; it is complex and involves memory allocation. errpipe_read, errpipe_write = os.pipe() # errpipe_write must not be in the standard io 0, 1, or 2 fd range. low_fds_to_close = [] while errpipe_write < 3: low_fds_to_close.append(errpipe_write) errpipe_write = os.dup(errpipe_write) for low_fd in low_fds_to_close: os.close(low_fd) try: try: # We must avoid complex work that could involve # malloc or free in the child process to avoid # potential deadlocks, thus we do all this here. # and pass it to fork_exec() if env is not None: env_list = [] for k, v in env.items(): k = os.fsencode(k) if b'=' in k: raise ValueError("illegal environment variable name") env_list.append(k + b'=' + os.fsencode(v)) else: env_list = None # Use execv instead of execve. executable = os.fsencode(executable) if os.path.dirname(executable): executable_list = (executable,) else: # This matches the behavior of os._execvpe(). executable_list = tuple( os.path.join(os.fsencode(dir), executable) for dir in os.get_exec_path(env)) fds_to_keep = set(pass_fds) fds_to_keep.add(errpipe_write) self.pid = _posixsubprocess.fork_exec( args, executable_list, close_fds, tuple(sorted(map(int, fds_to_keep))), cwd, env_list, p2cread, p2cwrite, c2pread, c2pwrite, errread, errwrite, errpipe_read, errpipe_write, restore_signals, start_new_session, gid, gids, uid, umask, preexec_fn) self._child_created = True finally: # be sure the FD is closed no matter what os.close(errpipe_write) self._close_pipe_fds(p2cread, p2cwrite, c2pread, c2pwrite, errread, errwrite) # Wait for exec to fail or succeed; possibly raising an # exception (limited in size) errpipe_data = bytearray() while True: part = os.read(errpipe_read, 50000) errpipe_data += part if not part or len(errpipe_data) > 50000: break finally: # be sure the FD is closed no matter what os.close(errpipe_read) if errpipe_data: try: pid, sts = os.waitpid(self.pid, 0) if pid == self.pid: self._handle_exitstatus(sts) else: self.returncode = sys.maxsize except ChildProcessError: pass try: exception_name, hex_errno, err_msg = ( errpipe_data.split(b':', 2)) # The encoding here should match the encoding # written in by the subprocess implementations # like _posixsubprocess err_msg = err_msg.decode() except ValueError: exception_name = b'SubprocessError' hex_errno = b'0' err_msg = 'Bad exception data from child: {!r}'.format( bytes(errpipe_data)) child_exception_type = getattr( builtins, exception_name.decode('ascii'), SubprocessError) if issubclass(child_exception_type, OSError) and hex_errno: errno_num = int(hex_errno, 16) child_exec_never_called = (err_msg == "noexec") if child_exec_never_called: err_msg = "" # The error must be from chdir(cwd). err_filename = cwd else: err_filename = orig_executable if errno_num != 0: err_msg = os.strerror(errno_num) > raise child_exception_type(errno_num, err_msg, err_filename) E FileNotFoundError: [Errno 2] No such file or directory: 'strun' /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/subprocess.py:1821: FileNotFoundError | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[fullframe-s2d] | 0.38 | |
|
run_pipeline = {'input': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pyt...s1_s2d.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_s2d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 's2d' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 5.1 E a: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw00023001001_01101_00001_nrs1_s2d.fits E b: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jw00023001001_01101_00001_nrs1_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Headers have different number of cards: E a: 78 E b: 76 E Extra keyword 'SHUTSTA' in a: '' E Extra keyword 'SLITID' in a: 0 E E Extension HDU 8 (SCI, 2): E E Headers contain differences: E Headers have different number of cards: E a: 76 E b: 74 E Extra keyword 'SHUTSTA' in a: '' E Extra keyword 'SLITID' in a: 0 E E Extension HDU 15 (SCI, 3): E E Headers contain differences: E Headers have different number of cards: E a: 76 E b: 74 E Extra keyword 'SHUTSTA' in a: '' E Extra keyword 'SLITID' in a: 0 E E Extension HDU 22 (SCI, 4): E E Headers contain differences: E Headers have different number of cards: E a: 76 E b: 74 E Extra keyword 'SHUTSTA' in a: '' E Extra keyword 'SLITID' in a: 0 E E Extension HDU 29 (SCI, 5): E E Headers contain differences: E Headers have different number of cards: E a: 76 E b: 74 E Extra keyword 'SHUTSTA' in a: '' E Extra keyword 'SLITID' in a: 0 E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f384cd0f550>.identical /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:66: AssertionError | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[S400A1-subarray-s2d] | 0.13 | |
|
run_pipeline = {'input': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pyt...s2_s2d.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_s2d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 's2d' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 5.1 E a: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw93045010001_02101_00001_nrs2_s2d.fits E b: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jw93045010001_02101_00001_nrs2_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Headers have different number of cards: E a: 55 E b: 53 E Extra keyword 'SHUTSTA' in a: '' E Extra keyword 'SLITID' in a: 0 E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f384d7a96d0>.identical /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:66: AssertionError | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[ALLSLITS-subarray-s2d] | 0.26 | |
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run_pipeline = {'input': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pyt...s1_s2d.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_s2d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 's2d' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 5.1 E a: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jwtest1013001_01101_00001_nrs1_s2d.fits E b: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jwtest1013001_01101_00001_nrs1_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Headers have different number of cards: E a: 78 E b: 76 E Extra keyword 'SHUTSTA' in a: '' E Extra keyword 'SLITID' in a: 0 E E Extension HDU 8 (SCI, 2): E E Headers contain differences: E Headers have different number of cards: E a: 76 E b: 74 E Extra keyword 'SHUTSTA' in a: '' E Extra keyword 'SLITID' in a: 0 E E Extension HDU 15 (SCI, 3): E E Headers contain differences: E Headers have different number of cards: E a: 76 E b: 74 E Extra keyword 'SHUTSTA' in a: '' E Extra keyword 'SLITID' in a: 0 E E Extension HDU 22 (SCI, 4): E E Headers contain differences: E Headers have different number of cards: E a: 76 E b: 74 E Extra keyword 'SHUTSTA' in a: '' E Extra keyword 'SLITID' in a: 0 E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f3851f12400>.identical /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:66: AssertionError | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec3.py::test_nirspec_fs_spec3[s2d] | 0.51 | |
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run_pipeline = None rtdata_module = {'input': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pyt...h_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec3/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_s2d.fits'} fitsdiff_default_kwargs = {'atol': 0.0002, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 's2d' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) def test_nirspec_fs_spec3(run_pipeline, rtdata_module, fitsdiff_default_kwargs, suffix): """Test spec3 pipeline on a set of NIRSpec FS exposures.""" rtdata = rtdata_module output = f"jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_fs_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-2 fitsdiff_default_kwargs["atol"] = 2e-4 # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 5.1 E a: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_s2d.fits E b: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0/truth/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.01, Absolute tolerance: 0.0002 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Headers have different number of cards: E a: 52 E b: 50 E Extra keyword 'SHUTSTA' in a: '' E Extra keyword 'SLITID' in a: 0 E Keyword SLTSIZE1 has different values: E a> 2048 E b> 1296 E Keyword SLTSTRT1 has different values: E a> 1 E b> 753 E Keyword SLTSTRT2 has different values: E a> 6 E b> 8 E E Extension HDU 8 (HDRTAB, 1): E E Headers contain differences: E Headers have different number of cards: E a: 816 E b: 820 E Extra keyword 'TTYPE404' in b: 'DEC_REF' E Extra keyword 'TTYPE405' in b: 'ROLL_REF' E Keyword TFIELDS has different values: E a> 403 E b> 405 E Keyword TTYPE263 has different values: E a> R_GAIN E b> R_FRIFRQ E Keyword TTYPE264 has different values: E a> R_IFUFOR E b> R_GAIN E Keyword TTYPE265 has different values: E a> R_IFUPOS E ? ^ ^ E b> R_IFUFOR E ? ^ ^ E Keyword TTYPE266 has different values: E a> R_IFUSLI E ? -- E b> R_IFUPOS E ? ++ E Keyword TTYPE267 has different values: E a> R_IPC E b> R_IFUSLI E Keyword TTYPE268 has different values: E a> R_LASTFR E b> R_IPC E Keyword TTYPE269 has different values: E a> R_LINEAR E b> R_LASTFR E Keyword TTYPE270 has different values: E a> R_MASK E b> R_LINEAR E Keyword TTYPE271 has different values: E a> R_MSA E b> R_MASK E Keyword TTYPE272 has different values: E a> R_OTE E b> R_MSA E Keyword TTYPE273 has different values: E a> R_PTHLOS E b> R_OTE E Keyword TTYPE274 has different values: E a> R_PERSAT E b> R_PTHLOS E Keyword TTYPE275 has different values: E a> R_PHOTOM E b> R_PERSAT E Keyword TTYPE276 has different values: E a> R_PSFMAS E b> R_PHOTOM E Keyword TTYPE277 has different values: E a> R_READNO E b> R_PSFMAS E Keyword TTYPE278 has different values: E a> R_REFPIX E b> R_READNO E Keyword TTYPE279 has different values: E a> R_REGION E b> R_REFPIX E Keyword TTYPE280 has different values: E a> R_RESAMP E b> R_REGION E Keyword TTYPE281 has different values: E a> R_RESOL E b> R_RESAMP E Keyword TTYPE282 has different values: E a> R_RESET E b> R_RESOL E Keyword TTYPE283 has different values: E a> R_RSCD E b> R_RESET E Keyword TTYPE284 has different values: E a> R_SATURA E b> R_RSCD E Keyword TTYPE285 has different values: E a> R_SPKERN E b> R_SATURA E Keyword TTYPE286 has different values: E a> R_SPPROF E b> R_SPKERN E Keyword TTYPE287 has different values: E a> R_SPTRAC E b> R_SPPROF E Keyword TTYPE288 has different values: E a> R_SPCWCS E b> R_SPTRAC E Keyword TTYPE289 has different values: E a> R_STRAY E b> R_SPCWCS E Keyword TTYPE290 has different values: E a> R_SUPERB E b> R_STRAY E Keyword TTYPE291 has different values: E a> R_THRPUT E b> R_SUPERB E Keyword TTYPE292 has different values: E a> R_TRPDEN E b> R_THRPUT E Keyword TTYPE293 has different values: E a> R_TRPPAR E b> R_TRPDEN E Keyword TTYPE294 has different values: E a> R_TSPHOT E b> R_TRPPAR E Keyword TTYPE295 has different values: E a> R_V2V3 E b> R_TSPHOT E Keyword TTYPE296 has different values: E a> R_WAVCOR E b> R_V2V3 E Keyword TTYPE297 has different values: E a> R_WAVRAN E ? -- E b> R_WAVCOR E ? ++ E Keyword TTYPE298 has different values: E a> R_WAVMAP E ? ^ ^ E b> R_WAVRAN E ? ^ ^ E Keyword TTYPE299 has different values: E a> S_PSFALI E b> R_WAVMAP E Keyword TTYPE300 has different values: E a> S_AMIANA E b> S_PSFALI E Keyword TTYPE301 has different values: E a> S_AMIAVG E ? ^^ E b> S_AMIANA E ? ^^ E Keyword TTYPE302 has different values: E a> S_AMINOR E b> S_AMIAVG E Keyword TTYPE303 has different values: E a> S_WCS E b> S_AMINOR E Keyword TTYPE304 has different values: E a> S_MTWCS E ? -- E b> S_WCS E Keyword TTYPE305 has different values: E a> S_BKDSUB E b> S_MTWCS E Keyword TTYPE306 has different values: E a> S_BARSHA E b> S_BKDSUB E Keyword TTYPE307 has different values: E a> S_COMB1D E b> S_BARSHA E Keyword TTYPE308 has different values: E a> S_IFUCUB E b> S_COMB1D E Keyword TTYPE309 has different values: E a> S_DARK E b> S_IFUCUB E Keyword TTYPE310 has different values: E a> S_DQINIT E b> S_DARK E Keyword TTYPE311 has different values: E a> S_TELEMI E b> S_DQINIT E Keyword TTYPE312 has different values: E a> S_ERRINI E b> S_TELEMI E Keyword TTYPE313 has different values: E a> S_EXTR1D E b> S_ERRINI E Keyword TTYPE314 has different values: E a> S_EXTR2D E ? ^ E b> S_EXTR1D E ? ^ E Keyword TTYPE315 has different values: E a> S_FRSTFR E b> S_EXTR2D E Keyword TTYPE316 has different values: E a> S_FLAT E b> S_FRSTFR E Keyword TTYPE317 has different values: E a> S_FRINGE E b> S_FLAT E Keyword TTYPE318 has different values: E a> S_GANSCL E b> S_FRINGE E Keyword TTYPE319 has different values: E a> S_GRPSCL E ? ^^ E b> S_GANSCL E ? ^^ E Keyword TTYPE320 has different values: E a> S_GUICDS E b> S_GRPSCL E Keyword TTYPE321 has different values: E a> S_IMPRNT E b> S_GUICDS E Keyword TTYPE322 has different values: E a> S_IPC E b> S_IMPRNT E Keyword TTYPE323 has different values: E a> S_JUMP E b> S_IPC E Keyword TTYPE324 has different values: E a> S_KLIP E b> S_JUMP E Keyword TTYPE325 has different values: E a> S_LASTFR E b> S_KLIP E Keyword TTYPE326 has different values: E a> S_LINEAR E b> S_LASTFR E Keyword TTYPE327 has different values: E a> S_MSBSUB E b> S_LINEAR E Keyword TTYPE328 has different values: E a> S_MRSMAT E b> S_MSBSUB E Keyword TTYPE329 has different values: E a> S_MSAFLG E b> S_MRSMAT E Keyword TTYPE330 has different values: E a> S_OUTLIR E b> S_MSAFLG E Keyword TTYPE331 has different values: E a> S_PTHLOS E b> S_OUTLIR E Keyword TTYPE332 has different values: E a> S_PERSIS E b> S_PTHLOS E Keyword TTYPE333 has different values: E a> S_PHOTOM E b> S_PERSIS E Keyword TTYPE334 has different values: E a> S_RAMP E b> S_PHOTOM E Keyword TTYPE335 has different values: E a> S_REFPIX E b> S_RAMP E Keyword TTYPE336 has different values: E a> S_RESAMP E b> S_REFPIX E Keyword TTYPE337 has different values: E a> S_RESET E b> S_RESAMP E Keyword TTYPE338 has different values: E a> S_RSCD E b> S_RESFRI E Keyword TTYPE339 has different values: E a> S_SATURA E b> S_RESET E Keyword TTYPE340 has different values: E a> S_SKYMAT E b> S_RSCD E Keyword TTYPE341 has different values: E a> S_SRCCAT E b> S_SATURA E Keyword TTYPE342 has different values: E a> S_SRCTYP E b> S_SKYMAT E Keyword TTYPE343 has different values: E a> S_PSFSTK E b> S_SRCCAT E Keyword TTYPE344 has different values: E a> S_STRAY E b> S_SRCTYP E Keyword TTYPE345 has different values: E a> S_SUPERB E b> S_PSFSTK E Keyword TTYPE346 has different values: E a> S_TSPHOT E b> S_STRAY E Keyword TTYPE347 has different values: E a> S_TWKREG E b> S_SUPERB E Keyword TTYPE348 has different values: E a> S_WAVCOR E b> S_TSPHOT E Keyword TTYPE349 has different values: E a> S_WFSCOM E b> S_TWKREG E Keyword TTYPE350 has different values: E a> S_WHTLIT E b> S_WAVCOR E Keyword TTYPE351 has different values: E a> BKGMETH E b> S_WFSCOM E Keyword TTYPE352 has different values: E a> BKGLEVEL E b> S_WHTLIT E Keyword TTYPE353 has different values: E a> BKGSUB E b> BKGMETH E Keyword TTYPE354 has different values: E a> BUNIT E b> BKGLEVEL E Keyword TTYPE355 has different values: E a> PHOTMJSR E b> BKGSUB E Keyword TTYPE356 has different values: E a> PHOTUJA2 E b> BUNIT E Keyword TTYPE357 has different values: E a> PIXAR_SR E b> PHOTMJSR E Keyword TTYPE358 has different values: E a> PIXAR_A2 E b> PHOTUJA2 E Keyword TTYPE359 has different values: E a> RADESYS E b> PIXAR_SR E Keyword TTYPE360 has different values: E a> RA_V1 E b> PIXAR_A2 E Keyword TTYPE361 has different values: E a> DEC_V1 E b> RADESYS E Keyword TTYPE362 has different values: E a> PA_V3 E b> RA_V1 E Keyword TTYPE363 has different values: E a> WCSAXES E b> DEC_V1 E Keyword TTYPE364 has different values: E a> CRPIX1 E b> PA_V3 E Keyword TTYPE365 has different values: E a> CRPIX2 E b> WCSAXES E Keyword TTYPE366 has different values: E a> CRPIX3 E ? ^ E b> CRPIX1 E ? ^ E Keyword TTYPE367 has different values: E a> CRVAL1 E b> CRPIX2 E Keyword TTYPE368 has different values: E a> CRVAL2 E b> CRPIX3 E Keyword TTYPE369 has different values: E a> CRVAL3 E ? ^ E b> CRVAL1 E ? ^ E Keyword TTYPE370 has different values: E a> CTYPE1 E b> CRVAL2 E Keyword TTYPE371 has different values: E a> CTYPE2 E b> CRVAL3 E Keyword TTYPE372 has different values: E a> CTYPE3 E ? ^ E b> CTYPE1 E ? ^ E Keyword TTYPE373 has different values: E a> CUNIT1 E b> CTYPE2 E Keyword TTYPE374 has different values: E a> CUNIT2 E b> CTYPE3 E Keyword TTYPE375 has different values: E a> CUNIT3 E ? ^ E b> CUNIT1 E ? ^ E Keyword TTYPE376 has different values: E a> CDELT1 E b> CUNIT2 E Keyword TTYPE377 has different values: E a> CDELT2 E b> CUNIT3 E Keyword TTYPE378 has different values: E a> CDELT3 E ? ^ E b> CDELT1 E ? ^ E Keyword TTYPE379 has different values: E a> PC1_1 E b> CDELT2 E Keyword TTYPE380 has different values: E a> PC1_2 E b> CDELT3 E Keyword TTYPE381 has different values: E a> PC1_3 E ? ^ E b> PC1_1 E ? ^ E Keyword TTYPE382 has different values: E a> PC2_1 E b> PC1_2 E Keyword TTYPE383 has different values: E a> PC2_2 E b> PC1_3 E Keyword TTYPE384 has different values: E a> PC2_3 E ? ^ E b> PC2_1 E ? ^ E Keyword TTYPE385 has different values: E a> PC3_1 E b> PC2_2 E Keyword TTYPE386 has different values: E a> PC3_2 E b> PC2_3 E Keyword TTYPE387 has different values: E a> PC3_3 E ? ^ E b> PC3_1 E ? ^ E Keyword TTYPE388 has different values: E a> CD1_1 E b> PC3_2 E Keyword TTYPE389 has different values: E a> CD1_2 E b> PC3_3 E Keyword TTYPE390 has different values: E a> CD2_1 E ? ^ E b> CD1_1 E ? ^ E Keyword TTYPE391 has different values: E a> CD2_2 E ? ^ E b> CD1_2 E ? ^ E Keyword TTYPE392 has different values: E a> S_REGION E b> CD2_1 E Keyword TTYPE393 has different values: E a> WAVSTART E b> CD2_2 E Keyword TTYPE394 has different values: E a> WAVEND E b> S_REGION E Keyword TTYPE395 has different values: E a> DISPAXIS E b> WAVSTART E Keyword TTYPE396 has different values: E a> SPORDER E b> WAVEND E Keyword TTYPE397 has different values: E a> V2_REF E b> DISPAXIS E Keyword TTYPE398 has different values: E a> V3_REF E b> SPORDER E Keyword TTYPE399 has different values: E a> VPARITY E b> V2_REF E Keyword TTYPE400 has different values: E a> V3I_YANG E b> V3_REF E Keyword TTYPE401 has different values: E a> RA_REF E b> VPARITY E Keyword TTYPE402 has different values: E a> DEC_REF E b> V3I_YANG E Keyword TTYPE403 has different values: E a> ROLL_REF E b> RA_REF E E Data contains differences: E Tables have different number of columns: E a: 403 E b: 405 E Extra column R_FRIFRQ of format D in b E Extra column S_RESFRI of format D in b E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f3840c0bca0>.identical /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec3.py:42: AssertionError | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec3.py::test_nirspec_fs_spec3[x1d] | 0.17 | |
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run_pipeline = None rtdata_module = {'input': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pyt...h_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec3/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_x1d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'x1d' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) def test_nirspec_fs_spec3(run_pipeline, rtdata_module, fitsdiff_default_kwargs, suffix): """Test spec3 pipeline on a set of NIRSpec FS exposures.""" rtdata = rtdata_module output = f"jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_fs_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-2 fitsdiff_default_kwargs["atol"] = 2e-4 # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 5.1 E a: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_x1d.fits E b: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0/truth/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_x1d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (EXTRACT1D, 1): E E Data contains differences: E Column FLUX data differs in row 1166: E a> 9316327.293526385 E b> 9316228.895659095 E 1 different table data element(s) found (0.00% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f384090f430>.identical /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec3.py:42: AssertionError | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_ifu_spec2.py::test_photom | 99.72 | |
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self = <astropy.io.fits.diff.FITSDiff object at 0x7f381d712e80> a = '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0/jwdata0010010_11010_0001_NRS1_photom.fits' b = '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0/truth/jwdata0010010_11010_0001_NRS1_photom.fits' ignore_hdus = ['ASDF'] ignore_keywords = ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...] ignore_comments = [] ignore_fields = ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...] numdiffs = 10, rtol = 1e-05, atol = 1e-07, ignore_blanks = True ignore_blank_cards = True def __init__(self, a, b, ignore_hdus=[], ignore_keywords=[], ignore_comments=[], ignore_fields=[], numdiffs=10, rtol=0.0, atol=0.0, ignore_blanks=True, ignore_blank_cards=True): """ Parameters ---------- a : str or `HDUList` The filename of a FITS file on disk, or an `HDUList` object. b : str or `HDUList` The filename of a FITS file on disk, or an `HDUList` object to compare to the first file. ignore_hdus : sequence, optional HDU names to ignore when comparing two FITS files or HDU lists; the presence of these HDUs and their contents are ignored. Wildcard strings may also be included in the list. ignore_keywords : sequence, optional Header keywords to ignore when comparing two headers; the presence of these keywords and their values are ignored. Wildcard strings may also be included in the list. ignore_comments : sequence, optional A list of header keywords whose comments should be ignored in the comparison. May contain wildcard strings as with ignore_keywords. ignore_fields : sequence, optional The (case-insensitive) names of any table columns to ignore if any table data is to be compared. numdiffs : int, optional The number of pixel/table values to output when reporting HDU data differences. Though the count of differences is the same either way, this allows controlling the number of different values that are kept in memory or output. If a negative value is given, then numdiffs is treated as unlimited (default: 10). rtol : float, optional The relative difference to allow when comparing two float values either in header values, image arrays, or table columns (default: 0.0). Values which satisfy the expression .. math:: \\left| a - b \\right| > \\text{atol} + \\text{rtol} \\cdot \\left| b \\right| are considered to be different. The underlying function used for comparison is `numpy.allclose`. .. versionadded:: 2.0 atol : float, optional The allowed absolute difference. See also ``rtol`` parameter. .. versionadded:: 2.0 ignore_blanks : bool, optional Ignore extra whitespace at the end of string values either in headers or data. Extra leading whitespace is not ignored (default: True). ignore_blank_cards : bool, optional Ignore all cards that are blank, i.e. they only contain whitespace (default: True). """ if isinstance(a, (str, os.PathLike)): try: > a = fitsopen(a) /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/io/fits/diff.py:269: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ name = '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0/jwdata0010010_11010_0001_NRS1_photom.fits' mode = 'readonly', memmap = False, save_backup = False, cache = True lazy_load_hdus = True, ignore_missing_simple = False, kwargs = {'uint': True} conf = <astropy.io.fits.Conf object at 0x7f387acc38b0> def fitsopen(name, mode='readonly', memmap=None, save_backup=False, cache=True, lazy_load_hdus=None, ignore_missing_simple=False, **kwargs): """Factory function to open a FITS file and return an `HDUList` object. Parameters ---------- name : str, file-like or `pathlib.Path` File to be opened. mode : str, optional Open mode, 'readonly', 'update', 'append', 'denywrite', or 'ostream'. Default is 'readonly'. If ``name`` is a file object that is already opened, ``mode`` must match the mode the file was opened with, readonly (rb), update (rb+), append (ab+), ostream (w), denywrite (rb)). memmap : bool, optional Is memory mapping to be used? This value is obtained from the configuration item ``astropy.io.fits.Conf.use_memmap``. Default is `True`. save_backup : bool, optional If the file was opened in update or append mode, this ensures that a backup of the original file is saved before any changes are flushed. The backup has the same name as the original file with ".bak" appended. If "file.bak" already exists then "file.bak.1" is used, and so on. Default is `False`. cache : bool, optional If the file name is a URL, `~astropy.utils.data.download_file` is used to open the file. This specifies whether or not to save the file locally in Astropy's download cache. Default is `True`. lazy_load_hdus : bool, optional To avoid reading all the HDUs and headers in a FITS file immediately upon opening. This is an optimization especially useful for large files, as FITS has no way of determining the number and offsets of all the HDUs in a file without scanning through the file and reading all the headers. Default is `True`. To disable lazy loading and read all HDUs immediately (the old behavior) use ``lazy_load_hdus=False``. This can lead to fewer surprises--for example with lazy loading enabled, ``len(hdul)`` can be slow, as it means the entire FITS file needs to be read in order to determine the number of HDUs. ``lazy_load_hdus=False`` ensures that all HDUs have already been loaded after the file has been opened. .. versionadded:: 1.3 uint : bool, optional Interpret signed integer data where ``BZERO`` is the central value and ``BSCALE == 1`` as unsigned integer data. For example, ``int16`` data with ``BZERO = 32768`` and ``BSCALE = 1`` would be treated as ``uint16`` data. Default is `True` so that the pseudo-unsigned integer convention is assumed. ignore_missing_end : bool, optional Do not raise an exception when opening a file that is missing an ``END`` card in the last header. Default is `False`. ignore_missing_simple : bool, optional Do not raise an exception when the SIMPLE keyword is missing. Note that io.fits will raise a warning if a SIMPLE card is present but written in a way that does not follow the FITS Standard. Default is `False`. .. versionadded:: 4.2 checksum : bool, str, optional If `True`, verifies that both ``DATASUM`` and ``CHECKSUM`` card values (when present in the HDU header) match the header and data of all HDU's in the file. Updates to a file that already has a checksum will preserve and update the existing checksums unless this argument is given a value of 'remove', in which case the CHECKSUM and DATASUM values are not checked, and are removed when saving changes to the file. Default is `False`. disable_image_compression : bool, optional If `True`, treats compressed image HDU's like normal binary table HDU's. Default is `False`. do_not_scale_image_data : bool, optional If `True`, image data is not scaled using BSCALE/BZERO values when read. Default is `False`. character_as_bytes : bool, optional Whether to return bytes for string columns, otherwise unicode strings are returned, but this does not respect memory mapping and loads the whole column in memory when accessed. Default is `False`. ignore_blank : bool, optional If `True`, the BLANK keyword is ignored if present. Default is `False`. scale_back : bool, optional If `True`, when saving changes to a file that contained scaled image data, restore the data to the original type and reapply the original BSCALE/BZERO values. This could lead to loss of accuracy if scaling back to integer values after performing floating point operations on the data. Default is `False`. output_verify : str Output verification option. Must be one of ``"fix"``, ``"silentfix"``, ``"ignore"``, ``"warn"``, or ``"exception"``. May also be any combination of ``"fix"`` or ``"silentfix"`` with ``"+ignore"``, ``+warn``, or ``+exception" (e.g. ``"fix+warn"``). See :ref:`astropy:verify` for more info. Returns ------- hdulist : `HDUList` `HDUList` containing all of the header data units in the file. """ from astropy.io.fits import conf if memmap is None: # distinguish between True (kwarg explicitly set) # and None (preference for memmap in config, might be ignored) memmap = None if conf.use_memmap else False else: memmap = bool(memmap) if lazy_load_hdus is None: lazy_load_hdus = conf.lazy_load_hdus else: lazy_load_hdus = bool(lazy_load_hdus) if 'uint' not in kwargs: kwargs['uint'] = conf.enable_uint if not name: raise ValueError(f'Empty filename: {name!r}') > return HDUList.fromfile(name, mode, memmap, save_backup, cache, lazy_load_hdus, ignore_missing_simple, **kwargs) /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/io/fits/hdu/hdulist.py:175: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ cls = <class 'astropy.io.fits.hdu.hdulist.HDUList'> fileobj = '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0/jwdata0010010_11010_0001_NRS1_photom.fits' mode = 'readonly', memmap = False, save_backup = False, cache = True lazy_load_hdus = True, ignore_missing_simple = False, kwargs = {'uint': True} @classmethod def fromfile(cls, fileobj, mode=None, memmap=None, save_backup=False, cache=True, lazy_load_hdus=True, ignore_missing_simple=False, **kwargs): """ Creates an `HDUList` instance from a file-like object. The actual implementation of ``fitsopen()``, and generally shouldn't be used directly. Use :func:`open` instead (and see its documentation for details of the parameters accepted by this method). """ > return cls._readfrom(fileobj=fileobj, mode=mode, memmap=memmap, save_backup=save_backup, cache=cache, ignore_missing_simple=ignore_missing_simple, lazy_load_hdus=lazy_load_hdus, **kwargs) /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/io/fits/hdu/hdulist.py:410: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ cls = <class 'astropy.io.fits.hdu.hdulist.HDUList'> fileobj = '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0/jwdata0010010_11010_0001_NRS1_photom.fits' data = None, mode = 'readonly', memmap = False, cache = True lazy_load_hdus = True, ignore_missing_simple = False kwargs = {'save_backup': False, 'uint': True} @classmethod def _readfrom(cls, fileobj=None, data=None, mode=None, memmap=None, cache=True, lazy_load_hdus=True, ignore_missing_simple=False, **kwargs): """ Provides the implementations from HDUList.fromfile and HDUList.fromstring, both of which wrap this method, as their implementations are largely the same. """ if fileobj is not None: if not isinstance(fileobj, _File): # instantiate a FITS file object (ffo) > fileobj = _File(fileobj, mode=mode, memmap=memmap, cache=cache) /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/io/fits/hdu/hdulist.py:1060: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <astropy.io.fits.file._File None> fileobj = '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0/jwdata0010010_11010_0001_NRS1_photom.fits' mode = 'readonly', memmap = False, overwrite = False, cache = True def __init__(self, fileobj=None, mode=None, memmap=None, overwrite=False, cache=True): self.strict_memmap = bool(memmap) memmap = True if memmap is None else memmap self._file = None self.closed = False self.binary = True self.mode = mode self.memmap = memmap self.compression = None self.readonly = False self.writeonly = False # Should the object be closed on error: see # https://github.com/astropy/astropy/issues/6168 self.close_on_error = False # Holds mmap instance for files that use mmap self._mmap = None if fileobj is None: self.simulateonly = True return else: self.simulateonly = False if isinstance(fileobj, os.PathLike): fileobj = os.fspath(fileobj) if mode is not None and mode not in IO_FITS_MODES: raise ValueError(f"Mode '{mode}' not recognized") if isfile(fileobj): objmode = _normalize_fits_mode(fileobj_mode(fileobj)) if mode is not None and mode != objmode: raise ValueError( "Requested FITS mode '{}' not compatible with open file " "handle mode '{}'".format(mode, objmode)) mode = objmode if mode is None: mode = 'readonly' # Handle raw URLs if (isinstance(fileobj, (str, bytes)) and mode not in ('ostream', 'append', 'update') and _is_url(fileobj)): self.name = download_file(fileobj, cache=cache) # Handle responses from URL requests that have already been opened elif isinstance(fileobj, http.client.HTTPResponse): if mode in ('ostream', 'append', 'update'): raise ValueError( f"Mode {mode} not supported for HTTPResponse") fileobj = io.BytesIO(fileobj.read()) else: self.name = fileobj_name(fileobj) self.mode = mode # Underlying fileobj is a file-like object, but an actual file object self.file_like = False # Initialize the internal self._file object if isfile(fileobj): self._open_fileobj(fileobj, mode, overwrite) elif isinstance(fileobj, (str, bytes)): > self._open_filename(fileobj, mode, overwrite) /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/io/fits/file.py:170: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <astropy.io.fits.file._File None> filename = '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0/jwdata0010010_11010_0001_NRS1_photom.fits' mode = 'readonly', overwrite = False def _open_filename(self, filename, mode, overwrite): """Open a FITS file from a filename string.""" if mode == 'ostream': self._overwrite_existing(overwrite, None, True) if os.path.exists(self.name): with open(self.name, 'rb') as f: magic = f.read(4) else: magic = b'' ext = os.path.splitext(self.name)[1] if not self._try_read_compressed(self.name, magic, mode, ext=ext): > self._file = open(self.name, IO_FITS_MODES[mode]) E FileNotFoundError: [Errno 2] No such file or directory: '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0/jwdata0010010_11010_0001_NRS1_photom.fits' /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/io/fits/file.py:562: FileNotFoundError During handling of the above exception, another exception occurred: run_photom = {'input': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pyt...S1_photom.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_ifu/jwdata0010010_11010_0001_NRS1_photom.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata def test_photom(run_photom, fitsdiff_default_kwargs): """Regression test matching output files""" > rt.is_like_truth(run_photom, fitsdiff_default_kwargs, 'photom', truth_path=TRUTH_PATH) /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_ifu_spec2.py:83: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <astropy.io.fits.diff.FITSDiff object at 0x7f381d712e80> a = '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0/jwdata0010010_11010_0001_NRS1_photom.fits' b = '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0/truth/jwdata0010010_11010_0001_NRS1_photom.fits' ignore_hdus = ['ASDF'] ignore_keywords = ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...] ignore_comments = [] ignore_fields = ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...] numdiffs = 10, rtol = 1e-05, atol = 1e-07, ignore_blanks = True ignore_blank_cards = True def __init__(self, a, b, ignore_hdus=[], ignore_keywords=[], ignore_comments=[], ignore_fields=[], numdiffs=10, rtol=0.0, atol=0.0, ignore_blanks=True, ignore_blank_cards=True): """ Parameters ---------- a : str or `HDUList` The filename of a FITS file on disk, or an `HDUList` object. b : str or `HDUList` The filename of a FITS file on disk, or an `HDUList` object to compare to the first file. ignore_hdus : sequence, optional HDU names to ignore when comparing two FITS files or HDU lists; the presence of these HDUs and their contents are ignored. Wildcard strings may also be included in the list. ignore_keywords : sequence, optional Header keywords to ignore when comparing two headers; the presence of these keywords and their values are ignored. Wildcard strings may also be included in the list. ignore_comments : sequence, optional A list of header keywords whose comments should be ignored in the comparison. May contain wildcard strings as with ignore_keywords. ignore_fields : sequence, optional The (case-insensitive) names of any table columns to ignore if any table data is to be compared. numdiffs : int, optional The number of pixel/table values to output when reporting HDU data differences. Though the count of differences is the same either way, this allows controlling the number of different values that are kept in memory or output. If a negative value is given, then numdiffs is treated as unlimited (default: 10). rtol : float, optional The relative difference to allow when comparing two float values either in header values, image arrays, or table columns (default: 0.0). Values which satisfy the expression .. math:: \\left| a - b \\right| > \\text{atol} + \\text{rtol} \\cdot \\left| b \\right| are considered to be different. The underlying function used for comparison is `numpy.allclose`. .. versionadded:: 2.0 atol : float, optional The allowed absolute difference. See also ``rtol`` parameter. .. versionadded:: 2.0 ignore_blanks : bool, optional Ignore extra whitespace at the end of string values either in headers or data. Extra leading whitespace is not ignored (default: True). ignore_blank_cards : bool, optional Ignore all cards that are blank, i.e. they only contain whitespace (default: True). """ if isinstance(a, (str, os.PathLike)): try: a = fitsopen(a) except Exception as exc: > raise OSError("error opening file a ({}): {}: {}".format( a, exc.__class__.__name__, exc.args[0])) E OSError: error opening file a (/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0/jwdata0010010_11010_0001_NRS1_photom.fits): FileNotFoundError: 2 /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/io/fits/diff.py:271: OSError -----------------------------Captured stderr setup------------------------------ 2022-10-06 04:29:38,978 - stpipe.PhotomStep - INFO - PhotomStep instance created. 2022-10-06 04:29:39,254 - stpipe.PhotomStep - INFO - Step PhotomStep running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0/jwdata0010010_11010_0001_NRS1_pathloss.fits',). 2022-10-06 04:29:39,255 - stpipe.PhotomStep - INFO - Step PhotomStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0', 'inverse': False, 'source_type': None} 2022-10-06 04:29:42,060 - stpipe.PhotomStep - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0016.fits 2022-10-06 04:29:42,060 - stpipe.PhotomStep - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0009.fits 2022-10-06 04:29:45,246 - stpipe.PhotomStep - INFO - Using instrument: NIRSPEC 2022-10-06 04:29:45,246 - stpipe.PhotomStep - INFO - detector: NRS1 2022-10-06 04:29:45,246 - stpipe.PhotomStep - INFO - exp_type: NRS_IFU 2022-10-06 04:29:45,246 - stpipe.PhotomStep - INFO - filter: F290LP 2022-10-06 04:29:45,246 - stpipe.PhotomStep - INFO - grating: G395H 2022-10-06 04:29:45,310 - stpipe.PhotomStep - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:30:59,178 - stpipe.PhotomStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:31:02,024 - stpipe.PhotomStep - INFO - Saved model in jwdata0010010_11010_0001_NRS1_photomstep.fits 2022-10-06 04:31:02,024 - stpipe.PhotomStep - INFO - Step PhotomStep done -------------------------------Captured log setup------------------------------- INFO stpipe.PhotomStep:step.py:366 PhotomStep instance created. INFO stpipe.PhotomStep:step.py:430 Step PhotomStep running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0/jwdata0010010_11010_0001_NRS1_pathloss.fits',). INFO stpipe.PhotomStep:step.py:434 Step PhotomStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0', 'inverse': False, 'source_type': None} DEBUG stpipe.PhotomStep:photom_step.py:35 Input is IFUImageModel INFO stpipe.PhotomStep:photom_step.py:55 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0016.fits INFO stpipe.PhotomStep:photom_step.py:56 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0009.fits INFO stpipe.PhotomStep:photom.py:144 Using instrument: NIRSPEC INFO stpipe.PhotomStep:photom.py:144 Using instrument: NIRSPEC INFO stpipe.PhotomStep:photom.py:145 detector: NRS1 INFO stpipe.PhotomStep:photom.py:145 detector: NRS1 INFO stpipe.PhotomStep:photom.py:146 exp_type: NRS_IFU INFO stpipe.PhotomStep:photom.py:146 exp_type: NRS_IFU INFO stpipe.PhotomStep:photom.py:148 filter: F290LP INFO stpipe.PhotomStep:photom.py:148 filter: F290LP INFO stpipe.PhotomStep:photom.py:152 grating: G395H INFO stpipe.PhotomStep:photom.py:152 grating: G395H DEBUG stpipe.PhotomStep:photom.py:271 Converting conversion factor from flux to surface brightness DEBUG stpipe.PhotomStep:photom.py:271 Converting conversion factor from flux to surface brightness INFO stpipe.PhotomStep:photom.py:277 PHOTMJSR value: 4.25452e+10 INFO stpipe.PhotomStep:photom.py:277 PHOTMJSR value: 4.25452e+10 DEBUG stpipe.PhotomStep:photom.py:621 Slice 0: 274 2047 781 829 DEBUG stpipe.PhotomStep:photom.py:621 Slice 0: 274 2047 781 829 DEBUG stpipe.PhotomStep:photom.py:621 Slice 1: 311 2047 1197 1247 DEBUG stpipe.PhotomStep:photom.py:621 Slice 1: 311 2047 1197 1247 DEBUG stpipe.PhotomStep:photom.py:621 Slice 2: 270 2047 731 780 DEBUG stpipe.PhotomStep:photom.py:621 Slice 2: 270 2047 731 780 DEBUG stpipe.PhotomStep:photom.py:621 Slice 3: 316 2047 1246 1296 DEBUG stpipe.PhotomStep:photom.py:621 Slice 3: 316 2047 1246 1296 DEBUG stpipe.PhotomStep:photom.py:621 Slice 4: 265 2047 682 731 DEBUG stpipe.PhotomStep:photom.py:621 Slice 4: 265 2047 682 731 DEBUG stpipe.PhotomStep:photom.py:621 Slice 5: 320 2047 1296 1345 DEBUG stpipe.PhotomStep:photom.py:621 Slice 5: 320 2047 1296 1345 DEBUG stpipe.PhotomStep:photom.py:621 Slice 6: 261 2047 633 681 DEBUG stpipe.PhotomStep:photom.py:621 Slice 6: 261 2047 633 681 DEBUG stpipe.PhotomStep:photom.py:621 Slice 7: 325 2047 1345 1394 DEBUG stpipe.PhotomStep:photom.py:621 Slice 7: 325 2047 1345 1394 DEBUG stpipe.PhotomStep:photom.py:621 Slice 8: 257 2047 584 632 DEBUG stpipe.PhotomStep:photom.py:621 Slice 8: 257 2047 584 632 DEBUG stpipe.PhotomStep:photom.py:621 Slice 9: 330 2047 1394 1443 DEBUG stpipe.PhotomStep:photom.py:621 Slice 9: 330 2047 1394 1443 DEBUG stpipe.PhotomStep:photom.py:621 Slice 10: 253 2047 534 583 DEBUG stpipe.PhotomStep:photom.py:621 Slice 10: 253 2047 534 583 DEBUG stpipe.PhotomStep:photom.py:621 Slice 11: 335 2047 1442 1492 DEBUG stpipe.PhotomStep:photom.py:621 Slice 11: 335 2047 1442 1492 DEBUG stpipe.PhotomStep:photom.py:621 Slice 12: 249 2047 485 534 DEBUG stpipe.PhotomStep:photom.py:621 Slice 12: 249 2047 485 534 DEBUG stpipe.PhotomStep:photom.py:621 Slice 13: 339 2047 1491 1541 DEBUG stpipe.PhotomStep:photom.py:621 Slice 13: 339 2047 1491 1541 DEBUG stpipe.PhotomStep:photom.py:621 Slice 14: 245 2047 436 484 DEBUG stpipe.PhotomStep:photom.py:621 Slice 14: 245 2047 436 484 DEBUG stpipe.PhotomStep:photom.py:621 Slice 15: 344 2047 1540 1590 DEBUG stpipe.PhotomStep:photom.py:621 Slice 15: 344 2047 1540 1590 DEBUG stpipe.PhotomStep:photom.py:621 Slice 16: 241 2047 387 435 DEBUG stpipe.PhotomStep:photom.py:621 Slice 16: 241 2047 387 435 DEBUG stpipe.PhotomStep:photom.py:621 Slice 17: 349 2047 1589 1639 DEBUG stpipe.PhotomStep:photom.py:621 Slice 17: 349 2047 1589 1639 DEBUG stpipe.PhotomStep:photom.py:621 Slice 18: 237 2047 337 386 DEBUG stpipe.PhotomStep:photom.py:621 Slice 18: 237 2047 337 386 DEBUG stpipe.PhotomStep:photom.py:621 Slice 19: 354 2047 1638 1688 DEBUG stpipe.PhotomStep:photom.py:621 Slice 19: 354 2047 1638 1688 DEBUG stpipe.PhotomStep:photom.py:621 Slice 20: 234 2047 288 336 DEBUG stpipe.PhotomStep:photom.py:621 Slice 20: 234 2047 288 336 DEBUG stpipe.PhotomStep:photom.py:621 Slice 21: 359 2047 1687 1737 DEBUG stpipe.PhotomStep:photom.py:621 Slice 21: 359 2047 1687 1737 DEBUG stpipe.PhotomStep:photom.py:621 Slice 22: 230 2047 238 287 DEBUG stpipe.PhotomStep:photom.py:621 Slice 22: 230 2047 238 287 DEBUG stpipe.PhotomStep:photom.py:621 Slice 23: 364 2047 1736 1786 DEBUG stpipe.PhotomStep:photom.py:621 Slice 23: 364 2047 1736 1786 DEBUG stpipe.PhotomStep:photom.py:621 Slice 24: 226 2047 189 238 DEBUG stpipe.PhotomStep:photom.py:621 Slice 24: 226 2047 189 238 DEBUG stpipe.PhotomStep:photom.py:621 Slice 25: 369 2047 1784 1835 DEBUG stpipe.PhotomStep:photom.py:621 Slice 25: 369 2047 1784 1835 DEBUG stpipe.PhotomStep:photom.py:621 Slice 26: 222 2047 140 188 DEBUG stpipe.PhotomStep:photom.py:621 Slice 26: 222 2047 140 188 DEBUG stpipe.PhotomStep:photom.py:621 Slice 27: 374 2047 1833 1884 DEBUG stpipe.PhotomStep:photom.py:621 Slice 27: 374 2047 1833 1884 DEBUG stpipe.PhotomStep:photom.py:621 Slice 28: 218 2047 90 138 DEBUG stpipe.PhotomStep:photom.py:621 Slice 28: 218 2047 90 138 DEBUG stpipe.PhotomStep:photom.py:621 Slice 29: 379 2047 1882 1932 DEBUG stpipe.PhotomStep:photom.py:621 Slice 29: 379 2047 1882 1932 INFO stpipe.PhotomStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.PhotomStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.PhotomStep:step.py:1016 Saved model in jwdata0010010_11010_0001_NRS1_photomstep.fits INFO stpipe.PhotomStep:step.py:546 Step PhotomStep done | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_lamp_fs_spec2.py::test_nirspec_lamp_fs_spec2[s2d] | 0.19 | |
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run_pipeline = {'input': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pyt..._s2d.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw84600010001_02101_00004_nrs2_s2d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 's2d' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "flat_field", "cal", "s2d", "x1d"]) def test_nirspec_lamp_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec lamp exposure in Fixed-Slit mode.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_lamp_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 5.1 E a: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0/jw84600010001_02101_00004_nrs2_s2d.fits E b: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0/truth/jw84600010001_02101_00004_nrs2_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Headers have different number of cards: E a: 52 E b: 48 E Extra keyword 'SHUTSTA' in a: '' E Extra keyword 'SLITID' in a: 0 E Extra keyword 'SRCXPOS' in a: 0.0 E Extra keyword 'SRCYPOS' in a: 0.0 E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f384cce84f0>.identical /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_lamp_fs_spec2.py:47: AssertionError | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_ifu_mbkg_nod[on-source] | 170.88 | |
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rtdata = {'input': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pyt..., 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_ifu_mbkg_nod/ifu_prism_source_on_NRS1_master_background.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} output_file = 'ifu_prism_source_on_NRS1_master_background.fits' @pytest.mark.parametrize( 'output_file', ['ifu_prism_source_on_NRS1_master_background.fits', 'ifu_prism_source_off_NRS1_o001_masterbg1d.fits', 'ifu_prism_source_on_NRS1_o001_masterbg2d.fits'], ids=["on-source", "off-source", "on-source2d"] ) def test_nirspec_ifu_mbkg_nod(rtdata, fitsdiff_default_kwargs, output_file): """Test NIRSpec IFU prism nodded data.""" # Get input data rtdata.get_asn("nirspec/ifu/nirspec_spec3_asn.json") MasterBackgroundStep.call(rtdata.input, save_background=True, save_results=True, suffix='master_background') rtdata.output = output_file # Get the truth file rtdata.get_truth(f"truth/test_nirspec_ifu_mbkg_nod/{output_file}") # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 5.1 E a: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s0/ifu_prism_source_on_NRS1_master_background.fits E b: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s0/truth/ifu_prism_source_on_NRS1_master_background.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Primary HDU: E E Headers contain differences: E Keyword ASNPOOL has different values: E a> singleton E b> jw95175_20190128T194403_pool E Keyword ASNTABLE has different values: E a> singleton E b> nirspec_spec3_asn.json E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f384d85f490>.identical /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py:178: AssertionError ------------------------------Captured stderr call------------------------------ 2022-10-06 04:54:38,561 - stpipe.MasterBackgroundStep - INFO - MasterBackgroundStep instance created. 2022-10-06 04:54:39,013 - stpipe.MasterBackgroundStep - INFO - Step MasterBackgroundStep running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s0/nirspec_spec3_asn.json',). 2022-10-06 04:54:39,014 - stpipe.MasterBackgroundStep - INFO - Step MasterBackgroundStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'master_background', 'search_output_file': True, 'input_dir': '', 'user_background': None, 'save_background': True, 'force_subtract': False} 2022-10-06 04:54:50,416 - stpipe.MasterBackgroundStep - INFO - Using exposure time as the weight. 2022-10-06 04:54:50,417 - stpipe.MasterBackgroundStep - WARNING - There is no WCS in the input. 2022-10-06 04:54:50,428 - stpipe.MasterBackgroundStep - INFO - Accumulating data from input spectrum 1 2022-10-06 04:56:55,202 - stpipe.MasterBackgroundStep - INFO - Applying point source pathloss updates to IFU background 2022-10-06 04:56:55,203 - stpipe.MasterBackgroundStep - WARNING - Pathloss_point array not found in input 2022-10-06 04:56:55,203 - stpipe.MasterBackgroundStep - WARNING - Skipping pathloss background updates 2022-10-06 04:57:04,596 - stpipe.MasterBackgroundStep - INFO - Saved model in ifu_prism_source_off_NRS1_o001_masterbg1d.fits 2022-10-06 04:57:12,114 - stpipe.MasterBackgroundStep - INFO - Saved model in ifu_prism_source_on_NRS1_o001_masterbg2d.fits 2022-10-06 04:57:20,219 - stpipe.MasterBackgroundStep - INFO - Saved model in ifu_prism_source_on_NRS1_master_background.fits 2022-10-06 04:57:20,219 - stpipe.MasterBackgroundStep - INFO - Step MasterBackgroundStep done -------------------------------Captured log call-------------------------------- INFO stpipe.MasterBackgroundStep:step.py:366 MasterBackgroundStep instance created. INFO stpipe.MasterBackgroundStep:step.py:430 Step MasterBackgroundStep running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s0/nirspec_spec3_asn.json',). INFO stpipe.MasterBackgroundStep:step.py:434 Step MasterBackgroundStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'master_background', 'search_output_file': True, 'input_dir': '', 'user_background': None, 'save_background': True, 'force_subtract': False} DEBUG stpipe.MasterBackgroundStep:master_background_step.py:125 Copying BACKGROUND column to SURF_BRIGHT DEBUG stpipe.MasterBackgroundStep:combine1d.py:564 Using exptime_key = exposure_time. DEBUG stpipe.MasterBackgroundStep:combine1d.py:564 Using exptime_key = exposure_time. INFO stpipe.MasterBackgroundStep:combine1d.py:529 Using exposure time as the weight. INFO stpipe.MasterBackgroundStep:combine1d.py:529 Using exposure time as the weight. WARNING stpipe.MasterBackgroundStep:combine1d.py:89 There is no WCS in the input. WARNING stpipe.MasterBackgroundStep:combine1d.py:89 There is no WCS in the input. INFO stpipe.MasterBackgroundStep:combine1d.py:204 Accumulating data from input spectrum 1 INFO stpipe.MasterBackgroundStep:combine1d.py:204 Accumulating data from input spectrum 1 INFO stpipe.MasterBackgroundStep:nirspec_utils.py:146 Applying point source pathloss updates to IFU background INFO stpipe.MasterBackgroundStep:nirspec_utils.py:146 Applying point source pathloss updates to IFU background WARNING stpipe.MasterBackgroundStep:nirspec_utils.py:152 Pathloss_point array not found in input WARNING stpipe.MasterBackgroundStep:nirspec_utils.py:152 Pathloss_point array not found in input WARNING stpipe.MasterBackgroundStep:nirspec_utils.py:153 Skipping pathloss background updates WARNING stpipe.MasterBackgroundStep:nirspec_utils.py:153 Skipping pathloss background updates INFO stpipe.MasterBackgroundStep:step.py:1016 Saved model in ifu_prism_source_off_NRS1_o001_masterbg1d.fits INFO stpipe.MasterBackgroundStep:step.py:1016 Saved model in ifu_prism_source_on_NRS1_o001_masterbg2d.fits INFO stpipe.MasterBackgroundStep:step.py:1016 Saved model in ifu_prism_source_on_NRS1_master_background.fits INFO stpipe.MasterBackgroundStep:step.py:546 Step MasterBackgroundStep done | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_ifu_mbkg_nod[off-source] | 172.36 | |
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rtdata = {'input': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pyt...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_ifu_mbkg_nod/ifu_prism_source_off_NRS1_o001_masterbg1d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} output_file = 'ifu_prism_source_off_NRS1_o001_masterbg1d.fits' @pytest.mark.parametrize( 'output_file', ['ifu_prism_source_on_NRS1_master_background.fits', 'ifu_prism_source_off_NRS1_o001_masterbg1d.fits', 'ifu_prism_source_on_NRS1_o001_masterbg2d.fits'], ids=["on-source", "off-source", "on-source2d"] ) def test_nirspec_ifu_mbkg_nod(rtdata, fitsdiff_default_kwargs, output_file): """Test NIRSpec IFU prism nodded data.""" # Get input data rtdata.get_asn("nirspec/ifu/nirspec_spec3_asn.json") MasterBackgroundStep.call(rtdata.input, save_background=True, save_results=True, suffix='master_background') rtdata.output = output_file # Get the truth file rtdata.get_truth(f"truth/test_nirspec_ifu_mbkg_nod/{output_file}") # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 5.1 E a: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_off_0/ifu_prism_source_off_NRS1_o001_masterbg1d.fits E b: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_off_0/truth/ifu_prism_source_off_NRS1_o001_masterbg1d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Primary HDU: E E Headers contain differences: E Keyword ASNPOOL has different values: E a> singleton E b> jw95175_20190128T194403_pool E Keyword ASNTABLE has different values: E a> singleton E b> nirspec_spec3_asn.json E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f3857215760>.identical /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py:178: AssertionError ------------------------------Captured stderr call------------------------------ 2022-10-06 04:57:30,022 - stpipe.MasterBackgroundStep - INFO - MasterBackgroundStep instance created. 2022-10-06 04:57:30,476 - stpipe.MasterBackgroundStep - INFO - Step MasterBackgroundStep running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_off_0/nirspec_spec3_asn.json',). 2022-10-06 04:57:30,477 - stpipe.MasterBackgroundStep - INFO - Step MasterBackgroundStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'master_background', 'search_output_file': True, 'input_dir': '', 'user_background': None, 'save_background': True, 'force_subtract': False} 2022-10-06 04:57:42,426 - stpipe.MasterBackgroundStep - INFO - Using exposure time as the weight. 2022-10-06 04:57:42,427 - stpipe.MasterBackgroundStep - WARNING - There is no WCS in the input. 2022-10-06 04:57:42,438 - stpipe.MasterBackgroundStep - INFO - Accumulating data from input spectrum 1 2022-10-06 04:59:52,051 - stpipe.MasterBackgroundStep - INFO - Applying point source pathloss updates to IFU background 2022-10-06 04:59:52,051 - stpipe.MasterBackgroundStep - WARNING - Pathloss_point array not found in input 2022-10-06 04:59:52,051 - stpipe.MasterBackgroundStep - WARNING - Skipping pathloss background updates 2022-10-06 04:59:59,681 - stpipe.MasterBackgroundStep - INFO - Saved model in ifu_prism_source_off_NRS1_o001_masterbg1d.fits 2022-10-06 05:00:06,847 - stpipe.MasterBackgroundStep - INFO - Saved model in ifu_prism_source_on_NRS1_o001_masterbg2d.fits 2022-10-06 05:00:14,506 - stpipe.MasterBackgroundStep - INFO - Saved model in ifu_prism_source_on_NRS1_master_background.fits 2022-10-06 05:00:14,506 - stpipe.MasterBackgroundStep - INFO - Step MasterBackgroundStep done -------------------------------Captured log call-------------------------------- INFO stpipe.MasterBackgroundStep:step.py:366 MasterBackgroundStep instance created. INFO stpipe.MasterBackgroundStep:step.py:430 Step MasterBackgroundStep running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_off_0/nirspec_spec3_asn.json',). INFO stpipe.MasterBackgroundStep:step.py:434 Step MasterBackgroundStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'master_background', 'search_output_file': True, 'input_dir': '', 'user_background': None, 'save_background': True, 'force_subtract': False} DEBUG stpipe.MasterBackgroundStep:master_background_step.py:125 Copying BACKGROUND column to SURF_BRIGHT DEBUG stpipe.MasterBackgroundStep:combine1d.py:564 Using exptime_key = exposure_time. DEBUG stpipe.MasterBackgroundStep:combine1d.py:564 Using exptime_key = exposure_time. INFO stpipe.MasterBackgroundStep:combine1d.py:529 Using exposure time as the weight. INFO stpipe.MasterBackgroundStep:combine1d.py:529 Using exposure time as the weight. WARNING stpipe.MasterBackgroundStep:combine1d.py:89 There is no WCS in the input. WARNING stpipe.MasterBackgroundStep:combine1d.py:89 There is no WCS in the input. INFO stpipe.MasterBackgroundStep:combine1d.py:204 Accumulating data from input spectrum 1 INFO stpipe.MasterBackgroundStep:combine1d.py:204 Accumulating data from input spectrum 1 INFO stpipe.MasterBackgroundStep:nirspec_utils.py:146 Applying point source pathloss updates to IFU background INFO stpipe.MasterBackgroundStep:nirspec_utils.py:146 Applying point source pathloss updates to IFU background WARNING stpipe.MasterBackgroundStep:nirspec_utils.py:152 Pathloss_point array not found in input WARNING stpipe.MasterBackgroundStep:nirspec_utils.py:152 Pathloss_point array not found in input WARNING stpipe.MasterBackgroundStep:nirspec_utils.py:153 Skipping pathloss background updates WARNING stpipe.MasterBackgroundStep:nirspec_utils.py:153 Skipping pathloss background updates INFO stpipe.MasterBackgroundStep:step.py:1016 Saved model in ifu_prism_source_off_NRS1_o001_masterbg1d.fits INFO stpipe.MasterBackgroundStep:step.py:1016 Saved model in ifu_prism_source_on_NRS1_o001_masterbg2d.fits INFO stpipe.MasterBackgroundStep:step.py:1016 Saved model in ifu_prism_source_on_NRS1_master_background.fits INFO stpipe.MasterBackgroundStep:step.py:546 Step MasterBackgroundStep done | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_ifu_mbkg_nod[on-source2d] | 169.74 | |
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rtdata = {'input': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pyt...s', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_ifu_mbkg_nod/ifu_prism_source_on_NRS1_o001_masterbg2d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} output_file = 'ifu_prism_source_on_NRS1_o001_masterbg2d.fits' @pytest.mark.parametrize( 'output_file', ['ifu_prism_source_on_NRS1_master_background.fits', 'ifu_prism_source_off_NRS1_o001_masterbg1d.fits', 'ifu_prism_source_on_NRS1_o001_masterbg2d.fits'], ids=["on-source", "off-source", "on-source2d"] ) def test_nirspec_ifu_mbkg_nod(rtdata, fitsdiff_default_kwargs, output_file): """Test NIRSpec IFU prism nodded data.""" # Get input data rtdata.get_asn("nirspec/ifu/nirspec_spec3_asn.json") MasterBackgroundStep.call(rtdata.input, save_background=True, save_results=True, suffix='master_background') rtdata.output = output_file # Get the truth file rtdata.get_truth(f"truth/test_nirspec_ifu_mbkg_nod/{output_file}") # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 5.1 E a: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s1/ifu_prism_source_on_NRS1_o001_masterbg2d.fits E b: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s1/truth/ifu_prism_source_on_NRS1_o001_masterbg2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Primary HDU: E E Headers contain differences: E Keyword ASNPOOL has different values: E a> singleton E b> jw95175_20190128T194403_pool E Keyword ASNTABLE has different values: E a> singleton E b> nirspec_spec3_asn.json E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f381d94f370>.identical /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py:178: AssertionError ------------------------------Captured stderr call------------------------------ 2022-10-06 05:00:22,485 - stpipe.MasterBackgroundStep - INFO - MasterBackgroundStep instance created. 2022-10-06 05:00:22,957 - stpipe.MasterBackgroundStep - INFO - Step MasterBackgroundStep running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s1/nirspec_spec3_asn.json',). 2022-10-06 05:00:22,958 - stpipe.MasterBackgroundStep - INFO - Step MasterBackgroundStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'master_background', 'search_output_file': True, 'input_dir': '', 'user_background': None, 'save_background': True, 'force_subtract': False} 2022-10-06 05:00:34,609 - stpipe.MasterBackgroundStep - INFO - Using exposure time as the weight. 2022-10-06 05:00:34,610 - stpipe.MasterBackgroundStep - WARNING - There is no WCS in the input. 2022-10-06 05:00:34,621 - stpipe.MasterBackgroundStep - INFO - Accumulating data from input spectrum 1 2022-10-06 05:02:38,961 - stpipe.MasterBackgroundStep - INFO - Applying point source pathloss updates to IFU background 2022-10-06 05:02:38,961 - stpipe.MasterBackgroundStep - WARNING - Pathloss_point array not found in input 2022-10-06 05:02:38,961 - stpipe.MasterBackgroundStep - WARNING - Skipping pathloss background updates 2022-10-06 05:02:46,743 - stpipe.MasterBackgroundStep - INFO - Saved model in ifu_prism_source_off_NRS1_o001_masterbg1d.fits 2022-10-06 05:02:54,229 - stpipe.MasterBackgroundStep - INFO - Saved model in ifu_prism_source_on_NRS1_o001_masterbg2d.fits 2022-10-06 05:03:02,336 - stpipe.MasterBackgroundStep - INFO - Saved model in ifu_prism_source_on_NRS1_master_background.fits 2022-10-06 05:03:02,336 - stpipe.MasterBackgroundStep - INFO - Step MasterBackgroundStep done -------------------------------Captured log call-------------------------------- INFO stpipe.MasterBackgroundStep:step.py:366 MasterBackgroundStep instance created. INFO stpipe.MasterBackgroundStep:step.py:430 Step MasterBackgroundStep running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s1/nirspec_spec3_asn.json',). INFO stpipe.MasterBackgroundStep:step.py:434 Step MasterBackgroundStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'master_background', 'search_output_file': True, 'input_dir': '', 'user_background': None, 'save_background': True, 'force_subtract': False} DEBUG stpipe.MasterBackgroundStep:master_background_step.py:125 Copying BACKGROUND column to SURF_BRIGHT DEBUG stpipe.MasterBackgroundStep:combine1d.py:564 Using exptime_key = exposure_time. DEBUG stpipe.MasterBackgroundStep:combine1d.py:564 Using exptime_key = exposure_time. INFO stpipe.MasterBackgroundStep:combine1d.py:529 Using exposure time as the weight. INFO stpipe.MasterBackgroundStep:combine1d.py:529 Using exposure time as the weight. WARNING stpipe.MasterBackgroundStep:combine1d.py:89 There is no WCS in the input. WARNING stpipe.MasterBackgroundStep:combine1d.py:89 There is no WCS in the input. INFO stpipe.MasterBackgroundStep:combine1d.py:204 Accumulating data from input spectrum 1 INFO stpipe.MasterBackgroundStep:combine1d.py:204 Accumulating data from input spectrum 1 INFO stpipe.MasterBackgroundStep:nirspec_utils.py:146 Applying point source pathloss updates to IFU background INFO stpipe.MasterBackgroundStep:nirspec_utils.py:146 Applying point source pathloss updates to IFU background WARNING stpipe.MasterBackgroundStep:nirspec_utils.py:152 Pathloss_point array not found in input WARNING stpipe.MasterBackgroundStep:nirspec_utils.py:152 Pathloss_point array not found in input WARNING stpipe.MasterBackgroundStep:nirspec_utils.py:153 Skipping pathloss background updates WARNING stpipe.MasterBackgroundStep:nirspec_utils.py:153 Skipping pathloss background updates INFO stpipe.MasterBackgroundStep:step.py:1016 Saved model in ifu_prism_source_off_NRS1_o001_masterbg1d.fits INFO stpipe.MasterBackgroundStep:step.py:1016 Saved model in ifu_prism_source_on_NRS1_o001_masterbg2d.fits INFO stpipe.MasterBackgroundStep:step.py:1016 Saved model in ifu_prism_source_on_NRS1_master_background.fits INFO stpipe.MasterBackgroundStep:step.py:546 Step MasterBackgroundStep done | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00000-s2d] | 0.54 | |
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run_pipeline = {'input': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pyt...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00000_nirspec_f170lp-g235m_s2d.fits'} suffix = 's2d', source_id = 's00000' fitsdiff_default_kwargs = {'atol': 1e-05, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 5.1 E a: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s00000_nirspec_f170lp-g235m_s2d.fits E b: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s00000_nirspec_f170lp-g235m_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 1e-05 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword SLTSIZE1 has different values: E a> 1332 E ? ^ E b> 1331 E ? ^ E Keyword SLTSTRT1 has different values: E a> 717 E b> 718 E Keyword SLTSTRT2 has different values: E a> 1345 E ? - E b> 1355 E ? + E E Data contains differences: E Data differs at [647, 20]: E a> 204117170.0 E b> 204082350.0 E 1 different pixels found (0.00% different). E E Extension HDU 2 (ERR, 1): E E Data contains differences: E Data differs at [1147, 4]: E a> 1853027700.0 E b> 1852819300.0 E 1 different pixels found (0.00% different). E E Extension HDU 5 (VAR_POISSON, 1): E E Data contains differences: E Data differs at [678, 3]: E a> 20493084000000.0 E ? ^ - E b> 20473048000000.0 E ? ^ + E Data differs at [1071, 6]: E a> 1.3359063e+17 E b> 1.3364018e+17 E Data differs at [598, 7]: E a> 1.7914156e+18 E ? ^^ ^ E b> 1.7916359e+18 E ? ^^ ^ E Data differs at [94, 20]: E a> 3.1983356e+18 E ? ^^ ^ E b> 3.1987655e+18 E ? ^^ ^ E Data differs at [287, 20]: E a> 3.135009e+17 E b> 3.1345754e+17 E Data differs at [676, 20]: E a> 1.353711e+18 E b> 1.3518948e+18 E Data differs at [1137, 20]: E a> 2.5384378e+18 E ? --- E b> 2.536881e+18 E ? + + E Data differs at [1253, 20]: E a> 1.5878021e+18 E b> 1.589368e+18 E Data differs at [1063, 22]: E a> 74886990000000.0 E ? ^^^^ E b> 74851350000000.0 E ? ^^^^ E 9 different pixels found (0.03% different). E E Extension HDU 6 (VAR_RNOISE, 1): E E Data contains differences: E Data differs at [109, 2]: E a> 2.6767075e+17 E ? ^^^ E b> 2.6763721e+17 E ? + ^^ E Data differs at [1071, 6]: E a> 2.311168e+17 E b> 2.3120254e+17 E 2 different pixels found (0.01% different). E E Extension HDU 7 (VAR_FLAT, 1): E E Data contains differences: E Data differs at [504, 4]: E a> 1.4741995e+18 E ? ^ ^^ E b> 1.4737198e+18 E ? ^^ ^ E Data differs at [1145, 4]: E a> 8.5513027e+18 E ? -- ^ E b> 8.550291e+18 E ? ^^ E Data differs at [1146, 4]: E a> 5.376766e+18 E ? ^ ^ E b> 5.3757614e+18 E ? ^ ^^ E Data differs at [1147, 4]: E a> 2.3749514e+18 E ? ^ -- E b> 2.3741865e+18 E ? ^^^ E Data differs at [64, 22]: E a> 1.0187657e+17 E ? - - E b> 1.0186315e+17 E ? ++ E Data differs at [154, 22]: E a> 1234205300000000.0 E ? - E b> 1234045300000000.0 E ? + E Data differs at [359, 22]: E a> 1508561100000000.0 E ? ^^ ^ E b> 1508371400000000.0 E ? ^^ ^ E Data differs at [480, 22]: E a> 4.7058716e+17 E ? ^^ - E b> 4.705331e+17 E ? ^^ E Data differs at [621, 22]: E a> 4025196400000000.0 E ? --- E b> 4024745400000000.0 E ? +++ E 9 different pixels found (0.03% different). E E Extension HDU 8 (HDRTAB, 1): E E Headers contain differences: E Headers have different number of cards: E a: 816 E b: 820 E Extra keyword 'TTYPE404' in b: 'DEC_REF' E Extra keyword 'TTYPE405' in b: 'ROLL_REF' E Keyword TFIELDS has different values: E a> 403 E b> 405 E Keyword TTYPE263 has different values: E a> R_GAIN E b> R_FRIFRQ E Keyword TTYPE264 has different values: E a> R_IFUFOR E b> R_GAIN E Keyword TTYPE265 has different values: E a> R_IFUPOS E ? ^ ^ E b> R_IFUFOR E ? ^ ^ E Keyword TTYPE266 has different values: E a> R_IFUSLI E ? -- E b> R_IFUPOS E ? ++ E Keyword TTYPE267 has different values: E a> R_IPC E b> R_IFUSLI E Keyword TTYPE268 has different values: E a> R_LASTFR E b> R_IPC E Keyword TTYPE269 has different values: E a> R_LINEAR E b> R_LASTFR E Keyword TTYPE270 has different values: E a> R_MASK E b> R_LINEAR E Keyword TTYPE271 has different values: E a> R_MSA E b> R_MASK E Keyword TTYPE272 has different values: E a> R_OTE E b> R_MSA E Keyword TTYPE273 has different values: E a> R_PTHLOS E b> R_OTE E Keyword TTYPE274 has different values: E a> R_PERSAT E b> R_PTHLOS E Keyword TTYPE275 has different values: E a> R_PHOTOM E b> R_PERSAT E Keyword TTYPE276 has different values: E a> R_PSFMAS E b> R_PHOTOM E Keyword TTYPE277 has different values: E a> R_READNO E b> R_PSFMAS E Keyword TTYPE278 has different values: E a> R_REFPIX E b> R_READNO E Keyword TTYPE279 has different values: E a> R_REGION E b> R_REFPIX E Keyword TTYPE280 has different values: E a> R_RESAMP E b> R_REGION E Keyword TTYPE281 has different values: E a> R_RESOL E b> R_RESAMP E Keyword TTYPE282 has different values: E a> R_RESET E b> R_RESOL E Keyword TTYPE283 has different values: E a> R_RSCD E b> R_RESET E Keyword TTYPE284 has different values: E a> R_SATURA E b> R_RSCD E Keyword TTYPE285 has different values: E a> R_SPKERN E b> R_SATURA E Keyword TTYPE286 has different values: E a> R_SPPROF E b> R_SPKERN E Keyword TTYPE287 has different values: E a> R_SPTRAC E b> R_SPPROF E Keyword TTYPE288 has different values: E a> R_SPCWCS E b> R_SPTRAC E Keyword TTYPE289 has different values: E a> R_STRAY E b> R_SPCWCS E Keyword TTYPE290 has different values: E a> R_SUPERB E b> R_STRAY E Keyword TTYPE291 has different values: E a> R_THRPUT E b> R_SUPERB E Keyword TTYPE292 has different values: E a> R_TRPDEN E b> R_THRPUT E Keyword TTYPE293 has different values: E a> R_TRPPAR E b> R_TRPDEN E Keyword TTYPE294 has different values: E a> R_TSPHOT E b> R_TRPPAR E Keyword TTYPE295 has different values: E a> R_V2V3 E b> R_TSPHOT E Keyword TTYPE296 has different values: E a> R_WAVCOR E b> R_V2V3 E Keyword TTYPE297 has different values: E a> R_WAVRAN E ? -- E b> R_WAVCOR E ? ++ E Keyword TTYPE298 has different values: E a> R_WAVMAP E ? ^ ^ E b> R_WAVRAN E ? ^ ^ E Keyword TTYPE299 has different values: E a> S_PSFALI E b> R_WAVMAP E Keyword TTYPE300 has different values: E a> S_AMIANA E b> S_PSFALI E Keyword TTYPE301 has different values: E a> S_AMIAVG E ? ^^ E b> S_AMIANA E ? ^^ E Keyword TTYPE302 has different values: E a> S_AMINOR E b> S_AMIAVG E Keyword TTYPE303 has different values: E a> S_WCS E b> S_AMINOR E Keyword TTYPE304 has different values: E a> S_MTWCS E ? -- E b> S_WCS E Keyword TTYPE305 has different values: E a> S_BKDSUB E b> S_MTWCS E Keyword TTYPE306 has different values: E a> S_BARSHA E b> S_BKDSUB E Keyword TTYPE307 has different values: E a> S_COMB1D E b> S_BARSHA E Keyword TTYPE308 has different values: E a> S_IFUCUB E b> S_COMB1D E Keyword TTYPE309 has different values: E a> S_DARK E b> S_IFUCUB E Keyword TTYPE310 has different values: E a> S_DQINIT E b> S_DARK E Keyword TTYPE311 has different values: E a> S_TELEMI E b> S_DQINIT E Keyword TTYPE312 has different values: E a> S_ERRINI E b> S_TELEMI E Keyword TTYPE313 has different values: E a> S_EXTR1D E b> S_ERRINI E Keyword TTYPE314 has different values: E a> S_EXTR2D E ? ^ E b> S_EXTR1D E ? ^ E Keyword TTYPE315 has different values: E a> S_FRSTFR E b> S_EXTR2D E Keyword TTYPE316 has different values: E a> S_FLAT E b> S_FRSTFR E Keyword TTYPE317 has different values: E a> S_FRINGE E b> S_FLAT E Keyword TTYPE318 has different values: E a> S_GANSCL E b> S_FRINGE E Keyword TTYPE319 has different values: E a> S_GRPSCL E ? ^^ E b> S_GANSCL E ? ^^ E Keyword TTYPE320 has different values: E a> S_GUICDS E b> S_GRPSCL E Keyword TTYPE321 has different values: E a> S_IMPRNT E b> S_GUICDS E Keyword TTYPE322 has different values: E a> S_IPC E b> S_IMPRNT E Keyword TTYPE323 has different values: E a> S_JUMP E b> S_IPC E Keyword TTYPE324 has different values: E a> S_KLIP E b> S_JUMP E Keyword TTYPE325 has different values: E a> S_LASTFR E b> S_KLIP E Keyword TTYPE326 has different values: E a> S_LINEAR E b> S_LASTFR E Keyword TTYPE327 has different values: E a> S_MSBSUB E b> S_LINEAR E Keyword TTYPE328 has different values: E a> S_MRSMAT E b> S_MSBSUB E Keyword TTYPE329 has different values: E a> S_MSAFLG E b> S_MRSMAT E Keyword TTYPE330 has different values: E a> S_OUTLIR E b> S_MSAFLG E Keyword TTYPE331 has different values: E a> S_PTHLOS E b> S_OUTLIR E Keyword TTYPE332 has different values: E a> S_PERSIS E b> S_PTHLOS E Keyword TTYPE333 has different values: E a> S_PHOTOM E b> S_PERSIS E Keyword TTYPE334 has different values: E a> S_RAMP E b> S_PHOTOM E Keyword TTYPE335 has different values: E a> S_REFPIX E b> S_RAMP E Keyword TTYPE336 has different values: E a> S_RESAMP E b> S_REFPIX E Keyword TTYPE337 has different values: E a> S_RESET E b> S_RESAMP E Keyword TTYPE338 has different values: E a> S_RSCD E b> S_RESFRI E Keyword TTYPE339 has different values: E a> S_SATURA E b> S_RESET E Keyword TTYPE340 has different values: E a> S_SKYMAT E b> S_RSCD E Keyword TTYPE341 has different values: E a> S_SRCCAT E b> S_SATURA E Keyword TTYPE342 has different values: E a> S_SRCTYP E b> S_SKYMAT E Keyword TTYPE343 has different values: E a> S_PSFSTK E b> S_SRCCAT E Keyword TTYPE344 has different values: E a> S_STRAY E b> S_SRCTYP E Keyword TTYPE345 has different values: E a> S_SUPERB E b> S_PSFSTK E Keyword TTYPE346 has different values: E a> S_TSPHOT E b> S_STRAY E Keyword TTYPE347 has different values: E a> S_TWKREG E b> S_SUPERB E Keyword TTYPE348 has different values: E a> S_WAVCOR E b> S_TSPHOT E Keyword TTYPE349 has different values: E a> S_WFSCOM E b> S_TWKREG E Keyword TTYPE350 has different values: E a> S_WHTLIT E b> S_WAVCOR E Keyword TTYPE351 has different values: E a> BKGMETH E b> S_WFSCOM E Keyword TTYPE352 has different values: E a> BKGLEVEL E b> S_WHTLIT E Keyword TTYPE353 has different values: E a> BKGSUB E b> BKGMETH E Keyword TTYPE354 has different values: E a> BUNIT E b> BKGLEVEL E Keyword TTYPE355 has different values: E a> PHOTMJSR E b> BKGSUB E Keyword TTYPE356 has different values: E a> PHOTUJA2 E b> BUNIT E Keyword TTYPE357 has different values: E a> PIXAR_SR E b> PHOTMJSR E Keyword TTYPE358 has different values: E a> PIXAR_A2 E b> PHOTUJA2 E Keyword TTYPE359 has different values: E a> RADESYS E b> PIXAR_SR E Keyword TTYPE360 has different values: E a> RA_V1 E b> PIXAR_A2 E Keyword TTYPE361 has different values: E a> DEC_V1 E b> RADESYS E Keyword TTYPE362 has different values: E a> PA_V3 E b> RA_V1 E Keyword TTYPE363 has different values: E a> WCSAXES E b> DEC_V1 E Keyword TTYPE364 has different values: E a> CRPIX1 E b> PA_V3 E Keyword TTYPE365 has different values: E a> CRPIX2 E b> WCSAXES E Keyword TTYPE366 has different values: E a> CRPIX3 E ? ^ E b> CRPIX1 E ? ^ E Keyword TTYPE367 has different values: E a> CRVAL1 E b> CRPIX2 E Keyword TTYPE368 has different values: E a> CRVAL2 E b> CRPIX3 E Keyword TTYPE369 has different values: E a> CRVAL3 E ? ^ E b> CRVAL1 E ? ^ E Keyword TTYPE370 has different values: E a> CTYPE1 E b> CRVAL2 E Keyword TTYPE371 has different values: E a> CTYPE2 E b> CRVAL3 E Keyword TTYPE372 has different values: E a> CTYPE3 E ? ^ E b> CTYPE1 E ? ^ E Keyword TTYPE373 has different values: E a> CUNIT1 E b> CTYPE2 E Keyword TTYPE374 has different values: E a> CUNIT2 E b> CTYPE3 E Keyword TTYPE375 has different values: E a> CUNIT3 E ? ^ E b> CUNIT1 E ? ^ E Keyword TTYPE376 has different values: E a> CDELT1 E b> CUNIT2 E Keyword TTYPE377 has different values: E a> CDELT2 E b> CUNIT3 E Keyword TTYPE378 has different values: E a> CDELT3 E ? ^ E b> CDELT1 E ? ^ E Keyword TTYPE379 has different values: E a> PC1_1 E b> CDELT2 E Keyword TTYPE380 has different values: E a> PC1_2 E b> CDELT3 E Keyword TTYPE381 has different values: E a> PC1_3 E ? ^ E b> PC1_1 E ? ^ E Keyword TTYPE382 has different values: E a> PC2_1 E b> PC1_2 E Keyword TTYPE383 has different values: E a> PC2_2 E b> PC1_3 E Keyword TTYPE384 has different values: E a> PC2_3 E ? ^ E b> PC2_1 E ? ^ E Keyword TTYPE385 has different values: E a> PC3_1 E b> PC2_2 E Keyword TTYPE386 has different values: E a> PC3_2 E b> PC2_3 E Keyword TTYPE387 has different values: E a> PC3_3 E ? ^ E b> PC3_1 E ? ^ E Keyword TTYPE388 has different values: E a> CD1_1 E b> PC3_2 E Keyword TTYPE389 has different values: E a> CD1_2 E b> PC3_3 E Keyword TTYPE390 has different values: E a> CD2_1 E ? ^ E b> CD1_1 E ? ^ E Keyword TTYPE391 has different values: E a> CD2_2 E ? ^ E b> CD1_2 E ? ^ E Keyword TTYPE392 has different values: E a> S_REGION E b> CD2_1 E Keyword TTYPE393 has different values: E a> WAVSTART E b> CD2_2 E Keyword TTYPE394 has different values: E a> WAVEND E b> S_REGION E Keyword TTYPE395 has different values: E a> DISPAXIS E b> WAVSTART E Keyword TTYPE396 has different values: E a> SPORDER E b> WAVEND E Keyword TTYPE397 has different values: E a> V2_REF E b> DISPAXIS E Keyword TTYPE398 has different values: E a> V3_REF E b> SPORDER E Keyword TTYPE399 has different values: E a> VPARITY E b> V2_REF E Keyword TTYPE400 has different values: E a> V3I_YANG E b> V3_REF E Keyword TTYPE401 has different values: E a> RA_REF E b> VPARITY E Keyword TTYPE402 has different values: E a> DEC_REF E b> V3I_YANG E Keyword TTYPE403 has different values: E a> ROLL_REF E b> RA_REF E E Data contains differences: E Tables have different number of columns: E a: 403 E b: 405 E Extra column R_FRIFRQ of format D in b E Extra column S_RESFRI of format D in b E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f382a558e20>.identical /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:38: AssertionError | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00227-s2d] | 0.45 | |
|
run_pipeline = {'input': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pyt...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00227_nirspec_f170lp-g235m_s2d.fits'} suffix = 's2d', source_id = 's00227' fitsdiff_default_kwargs = {'atol': 1e-05, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 5.1 E a: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s00227_nirspec_f170lp-g235m_s2d.fits E b: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s00227_nirspec_f170lp-g235m_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 1e-05 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword SHUTSTA has different values: E a> 11x E b> x11 E Keyword SRCXPOS has different values: E a> -0.9957999885082245 E b> -0.9634999930858612 E Keyword SRCYPOS has different values: E a> 1.844099998474121 E b> -0.1463000178337097 E E Extension HDU 8 (HDRTAB, 1): E E Headers contain differences: E Headers have different number of cards: E a: 816 E b: 820 E Extra keyword 'TTYPE404' in b: 'DEC_REF' E Extra keyword 'TTYPE405' in b: 'ROLL_REF' E Keyword TFIELDS has different values: E a> 403 E b> 405 E Keyword TTYPE263 has different values: E a> R_GAIN E b> R_FRIFRQ E Keyword TTYPE264 has different values: E a> R_IFUFOR E b> R_GAIN E Keyword TTYPE265 has different values: E a> R_IFUPOS E ? ^ ^ E b> R_IFUFOR E ? ^ ^ E Keyword TTYPE266 has different values: E a> R_IFUSLI E ? -- E b> R_IFUPOS E ? ++ E Keyword TTYPE267 has different values: E a> R_IPC E b> R_IFUSLI E Keyword TTYPE268 has different values: E a> R_LASTFR E b> R_IPC E Keyword TTYPE269 has different values: E a> R_LINEAR E b> R_LASTFR E Keyword TTYPE270 has different values: E a> R_MASK E b> R_LINEAR E Keyword TTYPE271 has different values: E a> R_MSA E b> R_MASK E Keyword TTYPE272 has different values: E a> R_OTE E b> R_MSA E Keyword TTYPE273 has different values: E a> R_PTHLOS E b> R_OTE E Keyword TTYPE274 has different values: E a> R_PERSAT E b> R_PTHLOS E Keyword TTYPE275 has different values: E a> R_PHOTOM E b> R_PERSAT E Keyword TTYPE276 has different values: E a> R_PSFMAS E b> R_PHOTOM E Keyword TTYPE277 has different values: E a> R_READNO E b> R_PSFMAS E Keyword TTYPE278 has different values: E a> R_REFPIX E b> R_READNO E Keyword TTYPE279 has different values: E a> R_REGION E b> R_REFPIX E Keyword TTYPE280 has different values: E a> R_RESAMP E b> R_REGION E Keyword TTYPE281 has different values: E a> R_RESOL E b> R_RESAMP E Keyword TTYPE282 has different values: E a> R_RESET E b> R_RESOL E Keyword TTYPE283 has different values: E a> R_RSCD E b> R_RESET E Keyword TTYPE284 has different values: E a> R_SATURA E b> R_RSCD E Keyword TTYPE285 has different values: E a> R_SPKERN E b> R_SATURA E Keyword TTYPE286 has different values: E a> R_SPPROF E b> R_SPKERN E Keyword TTYPE287 has different values: E a> R_SPTRAC E b> R_SPPROF E Keyword TTYPE288 has different values: E a> R_SPCWCS E b> R_SPTRAC E Keyword TTYPE289 has different values: E a> R_STRAY E b> R_SPCWCS E Keyword TTYPE290 has different values: E a> R_SUPERB E b> R_STRAY E Keyword TTYPE291 has different values: E a> R_THRPUT E b> R_SUPERB E Keyword TTYPE292 has different values: E a> R_TRPDEN E b> R_THRPUT E Keyword TTYPE293 has different values: E a> R_TRPPAR E b> R_TRPDEN E Keyword TTYPE294 has different values: E a> R_TSPHOT E b> R_TRPPAR E Keyword TTYPE295 has different values: E a> R_V2V3 E b> R_TSPHOT E Keyword TTYPE296 has different values: E a> R_WAVCOR E b> R_V2V3 E Keyword TTYPE297 has different values: E a> R_WAVRAN E ? -- E b> R_WAVCOR E ? ++ E Keyword TTYPE298 has different values: E a> R_WAVMAP E ? ^ ^ E b> R_WAVRAN E ? ^ ^ E Keyword TTYPE299 has different values: E a> S_PSFALI E b> R_WAVMAP E Keyword TTYPE300 has different values: E a> S_AMIANA E b> S_PSFALI E Keyword TTYPE301 has different values: E a> S_AMIAVG E ? ^^ E b> S_AMIANA E ? ^^ E Keyword TTYPE302 has different values: E a> S_AMINOR E b> S_AMIAVG E Keyword TTYPE303 has different values: E a> S_WCS E b> S_AMINOR E Keyword TTYPE304 has different values: E a> S_MTWCS E ? -- E b> S_WCS E Keyword TTYPE305 has different values: E a> S_BKDSUB E b> S_MTWCS E Keyword TTYPE306 has different values: E a> S_BARSHA E b> S_BKDSUB E Keyword TTYPE307 has different values: E a> S_COMB1D E b> S_BARSHA E Keyword TTYPE308 has different values: E a> S_IFUCUB E b> S_COMB1D E Keyword TTYPE309 has different values: E a> S_DARK E b> S_IFUCUB E Keyword TTYPE310 has different values: E a> S_DQINIT E b> S_DARK E Keyword TTYPE311 has different values: E a> S_TELEMI E b> S_DQINIT E Keyword TTYPE312 has different values: E a> S_ERRINI E b> S_TELEMI E Keyword TTYPE313 has different values: E a> S_EXTR1D E b> S_ERRINI E Keyword TTYPE314 has different values: E a> S_EXTR2D E ? ^ E b> S_EXTR1D E ? ^ E Keyword TTYPE315 has different values: E a> S_FRSTFR E b> S_EXTR2D E Keyword TTYPE316 has different values: E a> S_FLAT E b> S_FRSTFR E Keyword TTYPE317 has different values: E a> S_FRINGE E b> S_FLAT E Keyword TTYPE318 has different values: E a> S_GANSCL E b> S_FRINGE E Keyword TTYPE319 has different values: E a> S_GRPSCL E ? ^^ E b> S_GANSCL E ? ^^ E Keyword TTYPE320 has different values: E a> S_GUICDS E b> S_GRPSCL E Keyword TTYPE321 has different values: E a> S_IMPRNT E b> S_GUICDS E Keyword TTYPE322 has different values: E a> S_IPC E b> S_IMPRNT E Keyword TTYPE323 has different values: E a> S_JUMP E b> S_IPC E Keyword TTYPE324 has different values: E a> S_KLIP E b> S_JUMP E Keyword TTYPE325 has different values: E a> S_LASTFR E b> S_KLIP E Keyword TTYPE326 has different values: E a> S_LINEAR E b> S_LASTFR E Keyword TTYPE327 has different values: E a> S_MSBSUB E b> S_LINEAR E Keyword TTYPE328 has different values: E a> S_MRSMAT E b> S_MSBSUB E Keyword TTYPE329 has different values: E a> S_MSAFLG E b> S_MRSMAT E Keyword TTYPE330 has different values: E a> S_OUTLIR E b> S_MSAFLG E Keyword TTYPE331 has different values: E a> S_PTHLOS E b> S_OUTLIR E Keyword TTYPE332 has different values: E a> S_PERSIS E b> S_PTHLOS E Keyword TTYPE333 has different values: E a> S_PHOTOM E b> S_PERSIS E Keyword TTYPE334 has different values: E a> S_RAMP E b> S_PHOTOM E Keyword TTYPE335 has different values: E a> S_REFPIX E b> S_RAMP E Keyword TTYPE336 has different values: E a> S_RESAMP E b> S_REFPIX E Keyword TTYPE337 has different values: E a> S_RESET E b> S_RESAMP E Keyword TTYPE338 has different values: E a> S_RSCD E b> S_RESFRI E Keyword TTYPE339 has different values: E a> S_SATURA E b> S_RESET E Keyword TTYPE340 has different values: E a> S_SKYMAT E b> S_RSCD E Keyword TTYPE341 has different values: E a> S_SRCCAT E b> S_SATURA E Keyword TTYPE342 has different values: E a> S_SRCTYP E b> S_SKYMAT E Keyword TTYPE343 has different values: E a> S_PSFSTK E b> S_SRCCAT E Keyword TTYPE344 has different values: E a> S_STRAY E b> S_SRCTYP E Keyword TTYPE345 has different values: E a> S_SUPERB E b> S_PSFSTK E Keyword TTYPE346 has different values: E a> S_TSPHOT E b> S_STRAY E Keyword TTYPE347 has different values: E a> S_TWKREG E b> S_SUPERB E Keyword TTYPE348 has different values: E a> S_WAVCOR E b> S_TSPHOT E Keyword TTYPE349 has different values: E a> S_WFSCOM E b> S_TWKREG E Keyword TTYPE350 has different values: E a> S_WHTLIT E b> S_WAVCOR E Keyword TTYPE351 has different values: E a> BKGMETH E b> S_WFSCOM E Keyword TTYPE352 has different values: E a> BKGLEVEL E b> S_WHTLIT E Keyword TTYPE353 has different values: E a> BKGSUB E b> BKGMETH E Keyword TTYPE354 has different values: E a> BUNIT E b> BKGLEVEL E Keyword TTYPE355 has different values: E a> PHOTMJSR E b> BKGSUB E Keyword TTYPE356 has different values: E a> PHOTUJA2 E b> BUNIT E Keyword TTYPE357 has different values: E a> PIXAR_SR E b> PHOTMJSR E Keyword TTYPE358 has different values: E a> PIXAR_A2 E b> PHOTUJA2 E Keyword TTYPE359 has different values: E a> RADESYS E b> PIXAR_SR E Keyword TTYPE360 has different values: E a> RA_V1 E b> PIXAR_A2 E Keyword TTYPE361 has different values: E a> DEC_V1 E b> RADESYS E Keyword TTYPE362 has different values: E a> PA_V3 E b> RA_V1 E Keyword TTYPE363 has different values: E a> WCSAXES E b> DEC_V1 E Keyword TTYPE364 has different values: E a> CRPIX1 E b> PA_V3 E Keyword TTYPE365 has different values: E a> CRPIX2 E b> WCSAXES E Keyword TTYPE366 has different values: E a> CRPIX3 E ? ^ E b> CRPIX1 E ? ^ E Keyword TTYPE367 has different values: E a> CRVAL1 E b> CRPIX2 E Keyword TTYPE368 has different values: E a> CRVAL2 E b> CRPIX3 E Keyword TTYPE369 has different values: E a> CRVAL3 E ? ^ E b> CRVAL1 E ? ^ E Keyword TTYPE370 has different values: E a> CTYPE1 E b> CRVAL2 E Keyword TTYPE371 has different values: E a> CTYPE2 E b> CRVAL3 E Keyword TTYPE372 has different values: E a> CTYPE3 E ? ^ E b> CTYPE1 E ? ^ E Keyword TTYPE373 has different values: E a> CUNIT1 E b> CTYPE2 E Keyword TTYPE374 has different values: E a> CUNIT2 E b> CTYPE3 E Keyword TTYPE375 has different values: E a> CUNIT3 E ? ^ E b> CUNIT1 E ? ^ E Keyword TTYPE376 has different values: E a> CDELT1 E b> CUNIT2 E Keyword TTYPE377 has different values: E a> CDELT2 E b> CUNIT3 E Keyword TTYPE378 has different values: E a> CDELT3 E ? ^ E b> CDELT1 E ? ^ E Keyword TTYPE379 has different values: E a> PC1_1 E b> CDELT2 E Keyword TTYPE380 has different values: E a> PC1_2 E b> CDELT3 E Keyword TTYPE381 has different values: E a> PC1_3 E ? ^ E b> PC1_1 E ? ^ E Keyword TTYPE382 has different values: E a> PC2_1 E b> PC1_2 E Keyword TTYPE383 has different values: E a> PC2_2 E b> PC1_3 E Keyword TTYPE384 has different values: E a> PC2_3 E ? ^ E b> PC2_1 E ? ^ E Keyword TTYPE385 has different values: E a> PC3_1 E b> PC2_2 E Keyword TTYPE386 has different values: E a> PC3_2 E b> PC2_3 E Keyword TTYPE387 has different values: E a> PC3_3 E ? ^ E b> PC3_1 E ? ^ E Keyword TTYPE388 has different values: E a> CD1_1 E b> PC3_2 E Keyword TTYPE389 has different values: E a> CD1_2 E b> PC3_3 E Keyword TTYPE390 has different values: E a> CD2_1 E ? ^ E b> CD1_1 E ? ^ E Keyword TTYPE391 has different values: E a> CD2_2 E ? ^ E b> CD1_2 E ? ^ E Keyword TTYPE392 has different values: E a> S_REGION E b> CD2_1 E Keyword TTYPE393 has different values: E a> WAVSTART E b> CD2_2 E Keyword TTYPE394 has different values: E a> WAVEND E b> S_REGION E Keyword TTYPE395 has different values: E a> DISPAXIS E b> WAVSTART E Keyword TTYPE396 has different values: E a> SPORDER E b> WAVEND E Keyword TTYPE397 has different values: E a> V2_REF E b> DISPAXIS E Keyword TTYPE398 has different values: E a> V3_REF E b> SPORDER E Keyword TTYPE399 has different values: E a> VPARITY E b> V2_REF E Keyword TTYPE400 has different values: E a> V3I_YANG E b> V3_REF E Keyword TTYPE401 has different values: E a> RA_REF E b> VPARITY E Keyword TTYPE402 has different values: E a> DEC_REF E b> V3I_YANG E Keyword TTYPE403 has different values: E a> ROLL_REF E b> RA_REF E E Data contains differences: E Tables have different number of columns: E a: 403 E b: 405 E Extra column R_FRIFRQ of format D in b E Extra column S_RESFRI of format D in b E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f3819a00970>.identical /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:38: AssertionError | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00227-x1d] | 0.17 | |
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run_pipeline = {'input': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pyt...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00227_nirspec_f170lp-g235m_x1d.fits'} suffix = 'x1d', source_id = 's00227' fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 5.1 E a: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s00227_nirspec_f170lp-g235m_x1d.fits E b: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s00227_nirspec_f170lp-g235m_x1d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (EXTRACT1D, 1): E E Headers contain differences: E Keyword SHUTSTA has different values: E a> 11x E b> x11 E Keyword SRCXPOS has different values: E a> -0.9957999885082245 E b> -0.9634999930858612 E Keyword SRCYPOS has different values: E a> 1.844099998474121 E b> -0.1463000178337097 E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f384d2e7d90>.identical /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:38: AssertionError | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00279-s2d] | 0.48 | |
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run_pipeline = {'input': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pyt...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00279_nirspec_f170lp-g235m_s2d.fits'} suffix = 's2d', source_id = 's00279' fitsdiff_default_kwargs = {'atol': 1e-05, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 5.1 E a: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s00279_nirspec_f170lp-g235m_s2d.fits E b: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s00279_nirspec_f170lp-g235m_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 1e-05 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword SHUTSTA has different values: E a> 11x E b> x11 E Keyword SRCXPOS has different values: E a> -0.3410999774932861 E b> -0.3050000071525574 E Keyword SRCYPOS has different values: E a> 1.450700044631958 E b> -0.5469000339508057 E E Extension HDU 8 (HDRTAB, 1): E E Headers contain differences: E Headers have different number of cards: E a: 816 E b: 820 E Extra keyword 'TTYPE404' in b: 'DEC_REF' E Extra keyword 'TTYPE405' in b: 'ROLL_REF' E Keyword TFIELDS has different values: E a> 403 E b> 405 E Keyword TTYPE263 has different values: E a> R_GAIN E b> R_FRIFRQ E Keyword TTYPE264 has different values: E a> R_IFUFOR E b> R_GAIN E Keyword TTYPE265 has different values: E a> R_IFUPOS E ? ^ ^ E b> R_IFUFOR E ? ^ ^ E Keyword TTYPE266 has different values: E a> R_IFUSLI E ? -- E b> R_IFUPOS E ? ++ E Keyword TTYPE267 has different values: E a> R_IPC E b> R_IFUSLI E Keyword TTYPE268 has different values: E a> R_LASTFR E b> R_IPC E Keyword TTYPE269 has different values: E a> R_LINEAR E b> R_LASTFR E Keyword TTYPE270 has different values: E a> R_MASK E b> R_LINEAR E Keyword TTYPE271 has different values: E a> R_MSA E b> R_MASK E Keyword TTYPE272 has different values: E a> R_OTE E b> R_MSA E Keyword TTYPE273 has different values: E a> R_PTHLOS E b> R_OTE E Keyword TTYPE274 has different values: E a> R_PERSAT E b> R_PTHLOS E Keyword TTYPE275 has different values: E a> R_PHOTOM E b> R_PERSAT E Keyword TTYPE276 has different values: E a> R_PSFMAS E b> R_PHOTOM E Keyword TTYPE277 has different values: E a> R_READNO E b> R_PSFMAS E Keyword TTYPE278 has different values: E a> R_REFPIX E b> R_READNO E Keyword TTYPE279 has different values: E a> R_REGION E b> R_REFPIX E Keyword TTYPE280 has different values: E a> R_RESAMP E b> R_REGION E Keyword TTYPE281 has different values: E a> R_RESOL E b> R_RESAMP E Keyword TTYPE282 has different values: E a> R_RESET E b> R_RESOL E Keyword TTYPE283 has different values: E a> R_RSCD E b> R_RESET E Keyword TTYPE284 has different values: E a> R_SATURA E b> R_RSCD E Keyword TTYPE285 has different values: E a> R_SPKERN E b> R_SATURA E Keyword TTYPE286 has different values: E a> R_SPPROF E b> R_SPKERN E Keyword TTYPE287 has different values: E a> R_SPTRAC E b> R_SPPROF E Keyword TTYPE288 has different values: E a> R_SPCWCS E b> R_SPTRAC E Keyword TTYPE289 has different values: E a> R_STRAY E b> R_SPCWCS E Keyword TTYPE290 has different values: E a> R_SUPERB E b> R_STRAY E Keyword TTYPE291 has different values: E a> R_THRPUT E b> R_SUPERB E Keyword TTYPE292 has different values: E a> R_TRPDEN E b> R_THRPUT E Keyword TTYPE293 has different values: E a> R_TRPPAR E b> R_TRPDEN E Keyword TTYPE294 has different values: E a> R_TSPHOT E b> R_TRPPAR E Keyword TTYPE295 has different values: E a> R_V2V3 E b> R_TSPHOT E Keyword TTYPE296 has different values: E a> R_WAVCOR E b> R_V2V3 E Keyword TTYPE297 has different values: E a> R_WAVRAN E ? -- E b> R_WAVCOR E ? ++ E Keyword TTYPE298 has different values: E a> R_WAVMAP E ? ^ ^ E b> R_WAVRAN E ? ^ ^ E Keyword TTYPE299 has different values: E a> S_PSFALI E b> R_WAVMAP E Keyword TTYPE300 has different values: E a> S_AMIANA E b> S_PSFALI E Keyword TTYPE301 has different values: E a> S_AMIAVG E ? ^^ E b> S_AMIANA E ? ^^ E Keyword TTYPE302 has different values: E a> S_AMINOR E b> S_AMIAVG E Keyword TTYPE303 has different values: E a> S_WCS E b> S_AMINOR E Keyword TTYPE304 has different values: E a> S_MTWCS E ? -- E b> S_WCS E Keyword TTYPE305 has different values: E a> S_BKDSUB E b> S_MTWCS E Keyword TTYPE306 has different values: E a> S_BARSHA E b> S_BKDSUB E Keyword TTYPE307 has different values: E a> S_COMB1D E b> S_BARSHA E Keyword TTYPE308 has different values: E a> S_IFUCUB E b> S_COMB1D E Keyword TTYPE309 has different values: E a> S_DARK E b> S_IFUCUB E Keyword TTYPE310 has different values: E a> S_DQINIT E b> S_DARK E Keyword TTYPE311 has different values: E a> S_TELEMI E b> S_DQINIT E Keyword TTYPE312 has different values: E a> S_ERRINI E b> S_TELEMI E Keyword TTYPE313 has different values: E a> S_EXTR1D E b> S_ERRINI E Keyword TTYPE314 has different values: E a> S_EXTR2D E ? ^ E b> S_EXTR1D E ? ^ E Keyword TTYPE315 has different values: E a> S_FRSTFR E b> S_EXTR2D E Keyword TTYPE316 has different values: E a> S_FLAT E b> S_FRSTFR E Keyword TTYPE317 has different values: E a> S_FRINGE E b> S_FLAT E Keyword TTYPE318 has different values: E a> S_GANSCL E b> S_FRINGE E Keyword TTYPE319 has different values: E a> S_GRPSCL E ? ^^ E b> S_GANSCL E ? ^^ E Keyword TTYPE320 has different values: E a> S_GUICDS E b> S_GRPSCL E Keyword TTYPE321 has different values: E a> S_IMPRNT E b> S_GUICDS E Keyword TTYPE322 has different values: E a> S_IPC E b> S_IMPRNT E Keyword TTYPE323 has different values: E a> S_JUMP E b> S_IPC E Keyword TTYPE324 has different values: E a> S_KLIP E b> S_JUMP E Keyword TTYPE325 has different values: E a> S_LASTFR E b> S_KLIP E Keyword TTYPE326 has different values: E a> S_LINEAR E b> S_LASTFR E Keyword TTYPE327 has different values: E a> S_MSBSUB E b> S_LINEAR E Keyword TTYPE328 has different values: E a> S_MRSMAT E b> S_MSBSUB E Keyword TTYPE329 has different values: E a> S_MSAFLG E b> S_MRSMAT E Keyword TTYPE330 has different values: E a> S_OUTLIR E b> S_MSAFLG E Keyword TTYPE331 has different values: E a> S_PTHLOS E b> S_OUTLIR E Keyword TTYPE332 has different values: E a> S_PERSIS E b> S_PTHLOS E Keyword TTYPE333 has different values: E a> S_PHOTOM E b> S_PERSIS E Keyword TTYPE334 has different values: E a> S_RAMP E b> S_PHOTOM E Keyword TTYPE335 has different values: E a> S_REFPIX E b> S_RAMP E Keyword TTYPE336 has different values: E a> S_RESAMP E b> S_REFPIX E Keyword TTYPE337 has different values: E a> S_RESET E b> S_RESAMP E Keyword TTYPE338 has different values: E a> S_RSCD E b> S_RESFRI E Keyword TTYPE339 has different values: E a> S_SATURA E b> S_RESET E Keyword TTYPE340 has different values: E a> S_SKYMAT E b> S_RSCD E Keyword TTYPE341 has different values: E a> S_SRCCAT E b> S_SATURA E Keyword TTYPE342 has different values: E a> S_SRCTYP E b> S_SKYMAT E Keyword TTYPE343 has different values: E a> S_PSFSTK E b> S_SRCCAT E Keyword TTYPE344 has different values: E a> S_STRAY E b> S_SRCTYP E Keyword TTYPE345 has different values: E a> S_SUPERB E b> S_PSFSTK E Keyword TTYPE346 has different values: E a> S_TSPHOT E b> S_STRAY E Keyword TTYPE347 has different values: E a> S_TWKREG E b> S_SUPERB E Keyword TTYPE348 has different values: E a> S_WAVCOR E b> S_TSPHOT E Keyword TTYPE349 has different values: E a> S_WFSCOM E b> S_TWKREG E Keyword TTYPE350 has different values: E a> S_WHTLIT E b> S_WAVCOR E Keyword TTYPE351 has different values: E a> BKGMETH E b> S_WFSCOM E Keyword TTYPE352 has different values: E a> BKGLEVEL E b> S_WHTLIT E Keyword TTYPE353 has different values: E a> BKGSUB E b> BKGMETH E Keyword TTYPE354 has different values: E a> BUNIT E b> BKGLEVEL E Keyword TTYPE355 has different values: E a> PHOTMJSR E b> BKGSUB E Keyword TTYPE356 has different values: E a> PHOTUJA2 E b> BUNIT E Keyword TTYPE357 has different values: E a> PIXAR_SR E b> PHOTMJSR E Keyword TTYPE358 has different values: E a> PIXAR_A2 E b> PHOTUJA2 E Keyword TTYPE359 has different values: E a> RADESYS E b> PIXAR_SR E Keyword TTYPE360 has different values: E a> RA_V1 E b> PIXAR_A2 E Keyword TTYPE361 has different values: E a> DEC_V1 E b> RADESYS E Keyword TTYPE362 has different values: E a> PA_V3 E b> RA_V1 E Keyword TTYPE363 has different values: E a> WCSAXES E b> DEC_V1 E Keyword TTYPE364 has different values: E a> CRPIX1 E b> PA_V3 E Keyword TTYPE365 has different values: E a> CRPIX2 E b> WCSAXES E Keyword TTYPE366 has different values: E a> CRPIX3 E ? ^ E b> CRPIX1 E ? ^ E Keyword TTYPE367 has different values: E a> CRVAL1 E b> CRPIX2 E Keyword TTYPE368 has different values: E a> CRVAL2 E b> CRPIX3 E Keyword TTYPE369 has different values: E a> CRVAL3 E ? ^ E b> CRVAL1 E ? ^ E Keyword TTYPE370 has different values: E a> CTYPE1 E b> CRVAL2 E Keyword TTYPE371 has different values: E a> CTYPE2 E b> CRVAL3 E Keyword TTYPE372 has different values: E a> CTYPE3 E ? ^ E b> CTYPE1 E ? ^ E Keyword TTYPE373 has different values: E a> CUNIT1 E b> CTYPE2 E Keyword TTYPE374 has different values: E a> CUNIT2 E b> CTYPE3 E Keyword TTYPE375 has different values: E a> CUNIT3 E ? ^ E b> CUNIT1 E ? ^ E Keyword TTYPE376 has different values: E a> CDELT1 E b> CUNIT2 E Keyword TTYPE377 has different values: E a> CDELT2 E b> CUNIT3 E Keyword TTYPE378 has different values: E a> CDELT3 E ? ^ E b> CDELT1 E ? ^ E Keyword TTYPE379 has different values: E a> PC1_1 E b> CDELT2 E Keyword TTYPE380 has different values: E a> PC1_2 E b> CDELT3 E Keyword TTYPE381 has different values: E a> PC1_3 E ? ^ E b> PC1_1 E ? ^ E Keyword TTYPE382 has different values: E a> PC2_1 E b> PC1_2 E Keyword TTYPE383 has different values: E a> PC2_2 E b> PC1_3 E Keyword TTYPE384 has different values: E a> PC2_3 E ? ^ E b> PC2_1 E ? ^ E Keyword TTYPE385 has different values: E a> PC3_1 E b> PC2_2 E Keyword TTYPE386 has different values: E a> PC3_2 E b> PC2_3 E Keyword TTYPE387 has different values: E a> PC3_3 E ? ^ E b> PC3_1 E ? ^ E Keyword TTYPE388 has different values: E a> CD1_1 E b> PC3_2 E Keyword TTYPE389 has different values: E a> CD1_2 E b> PC3_3 E Keyword TTYPE390 has different values: E a> CD2_1 E ? ^ E b> CD1_1 E ? ^ E Keyword TTYPE391 has different values: E a> CD2_2 E ? ^ E b> CD1_2 E ? ^ E Keyword TTYPE392 has different values: E a> S_REGION E b> CD2_1 E Keyword TTYPE393 has different values: E a> WAVSTART E b> CD2_2 E Keyword TTYPE394 has different values: E a> WAVEND E b> S_REGION E Keyword TTYPE395 has different values: E a> DISPAXIS E b> WAVSTART E Keyword TTYPE396 has different values: E a> SPORDER E b> WAVEND E Keyword TTYPE397 has different values: E a> V2_REF E b> DISPAXIS E Keyword TTYPE398 has different values: E a> V3_REF E b> SPORDER E Keyword TTYPE399 has different values: E a> VPARITY E b> V2_REF E Keyword TTYPE400 has different values: E a> V3I_YANG E b> V3_REF E Keyword TTYPE401 has different values: E a> RA_REF E b> VPARITY E Keyword TTYPE402 has different values: E a> DEC_REF E b> V3I_YANG E Keyword TTYPE403 has different values: E a> ROLL_REF E b> RA_REF E E Data contains differences: E Tables have different number of columns: E a: 403 E b: 405 E Extra column R_FRIFRQ of format D in b E Extra column S_RESFRI of format D in b E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f382ee00070>.identical /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:38: AssertionError | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00279-x1d] | 0.16 | |
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run_pipeline = {'input': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pyt...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00279_nirspec_f170lp-g235m_x1d.fits'} suffix = 'x1d', source_id = 's00279' fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 5.1 E a: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s00279_nirspec_f170lp-g235m_x1d.fits E b: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s00279_nirspec_f170lp-g235m_x1d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (EXTRACT1D, 1): E E Headers contain differences: E Keyword SHUTSTA has different values: E a> 11x E b> x11 E Keyword SRCXPOS has different values: E a> -0.3410999774932861 E b> -0.3050000071525574 E Keyword SRCYPOS has different values: E a> 1.450700044631958 E b> -0.5469000339508057 E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f38b6e96be0>.identical /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:38: AssertionError | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00443-s2d] | 0.62 | |
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run_pipeline = {'input': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pyt...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00443_nirspec_f170lp-g235m_s2d.fits'} suffix = 's2d', source_id = 's00443' fitsdiff_default_kwargs = {'atol': 1e-05, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 5.1 E a: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s00443_nirspec_f170lp-g235m_s2d.fits E b: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s00443_nirspec_f170lp-g235m_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 1e-05 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword SHUTSTA has different values: E a> 11x E b> x11 E Keyword SRCXPOS has different values: E a> -0.383899986743927 E b> -0.3514000177383423 E Keyword SRCYPOS has different values: E a> 1.644999980926514 E b> -0.3780999779701233 E Keyword S_REGION has different values: E a> POLYGON ICRS 98.773526785 -66.832161955 98.814160709 -66.832161955 98.814160709 -66.763084397 98.773526785 -66.763084397 E ? ^ ^ E b> POLYGON ICRS 98.773526786 -66.832161955 98.814160709 -66.832161955 98.814160709 -66.763084397 98.773526786 -66.763084397 E ? ^ ^ E E Extension HDU 3 (WHT, 1): E E Data contains differences: E Data differs at [503, 2]: E a> 0.11776182 E b> 0.1175893 E Data differs at [504, 2]: E a> 2.4455292 E b> 2.444911 E Data differs at [505, 2]: E a> 5.8215814 E b> 5.820961 E Data differs at [868, 2]: E a> 0.874991 E b> 0.87467223 E Data differs at [994, 2]: E a> 0.13416347 E b> 0.13413203 E Data differs at [1103, 2]: E a> 0.04569143 E b> 0.045676395 E 6 different pixels found (0.02% different). E E Extension HDU 8 (HDRTAB, 1): E E Headers contain differences: E Headers have different number of cards: E a: 816 E b: 820 E Extra keyword 'TTYPE404' in b: 'DEC_REF' E Extra keyword 'TTYPE405' in b: 'ROLL_REF' E Keyword TFIELDS has different values: E a> 403 E b> 405 E Keyword TTYPE263 has different values: E a> R_GAIN E b> R_FRIFRQ E Keyword TTYPE264 has different values: E a> R_IFUFOR E b> R_GAIN E Keyword TTYPE265 has different values: E a> R_IFUPOS E ? ^ ^ E b> R_IFUFOR E ? ^ ^ E Keyword TTYPE266 has different values: E a> R_IFUSLI E ? -- E b> R_IFUPOS E ? ++ E Keyword TTYPE267 has different values: E a> R_IPC E b> R_IFUSLI E Keyword TTYPE268 has different values: E a> R_LASTFR E b> R_IPC E Keyword TTYPE269 has different values: E a> R_LINEAR E b> R_LASTFR E Keyword TTYPE270 has different values: E a> R_MASK E b> R_LINEAR E Keyword TTYPE271 has different values: E a> R_MSA E b> R_MASK E Keyword TTYPE272 has different values: E a> R_OTE E b> R_MSA E Keyword TTYPE273 has different values: E a> R_PTHLOS E b> R_OTE E Keyword TTYPE274 has different values: E a> R_PERSAT E b> R_PTHLOS E Keyword TTYPE275 has different values: E a> R_PHOTOM E b> R_PERSAT E Keyword TTYPE276 has different values: E a> R_PSFMAS E b> R_PHOTOM E Keyword TTYPE277 has different values: E a> R_READNO E b> R_PSFMAS E Keyword TTYPE278 has different values: E a> R_REFPIX E b> R_READNO E Keyword TTYPE279 has different values: E a> R_REGION E b> R_REFPIX E Keyword TTYPE280 has different values: E a> R_RESAMP E b> R_REGION E Keyword TTYPE281 has different values: E a> R_RESOL E b> R_RESAMP E Keyword TTYPE282 has different values: E a> R_RESET E b> R_RESOL E Keyword TTYPE283 has different values: E a> R_RSCD E b> R_RESET E Keyword TTYPE284 has different values: E a> R_SATURA E b> R_RSCD E Keyword TTYPE285 has different values: E a> R_SPKERN E b> R_SATURA E Keyword TTYPE286 has different values: E a> R_SPPROF E b> R_SPKERN E Keyword TTYPE287 has different values: E a> R_SPTRAC E b> R_SPPROF E Keyword TTYPE288 has different values: E a> R_SPCWCS E b> R_SPTRAC E Keyword TTYPE289 has different values: E a> R_STRAY E b> R_SPCWCS E Keyword TTYPE290 has different values: E a> R_SUPERB E b> R_STRAY E Keyword TTYPE291 has different values: E a> R_THRPUT E b> R_SUPERB E Keyword TTYPE292 has different values: E a> R_TRPDEN E b> R_THRPUT E Keyword TTYPE293 has different values: E a> R_TRPPAR E b> R_TRPDEN E Keyword TTYPE294 has different values: E a> R_TSPHOT E b> R_TRPPAR E Keyword TTYPE295 has different values: E a> R_V2V3 E b> R_TSPHOT E Keyword TTYPE296 has different values: E a> R_WAVCOR E b> R_V2V3 E Keyword TTYPE297 has different values: E a> R_WAVRAN E ? -- E b> R_WAVCOR E ? ++ E Keyword TTYPE298 has different values: E a> R_WAVMAP E ? ^ ^ E b> R_WAVRAN E ? ^ ^ E Keyword TTYPE299 has different values: E a> S_PSFALI E b> R_WAVMAP E Keyword TTYPE300 has different values: E a> S_AMIANA E b> S_PSFALI E Keyword TTYPE301 has different values: E a> S_AMIAVG E ? ^^ E b> S_AMIANA E ? ^^ E Keyword TTYPE302 has different values: E a> S_AMINOR E b> S_AMIAVG E Keyword TTYPE303 has different values: E a> S_WCS E b> S_AMINOR E Keyword TTYPE304 has different values: E a> S_MTWCS E ? -- E b> S_WCS E Keyword TTYPE305 has different values: E a> S_BKDSUB E b> S_MTWCS E Keyword TTYPE306 has different values: E a> S_BARSHA E b> S_BKDSUB E Keyword TTYPE307 has different values: E a> S_COMB1D E b> S_BARSHA E Keyword TTYPE308 has different values: E a> S_IFUCUB E b> S_COMB1D E Keyword TTYPE309 has different values: E a> S_DARK E b> S_IFUCUB E Keyword TTYPE310 has different values: E a> S_DQINIT E b> S_DARK E Keyword TTYPE311 has different values: E a> S_TELEMI E b> S_DQINIT E Keyword TTYPE312 has different values: E a> S_ERRINI E b> S_TELEMI E Keyword TTYPE313 has different values: E a> S_EXTR1D E b> S_ERRINI E Keyword TTYPE314 has different values: E a> S_EXTR2D E ? ^ E b> S_EXTR1D E ? ^ E Keyword TTYPE315 has different values: E a> S_FRSTFR E b> S_EXTR2D E Keyword TTYPE316 has different values: E a> S_FLAT E b> S_FRSTFR E Keyword TTYPE317 has different values: E a> S_FRINGE E b> S_FLAT E Keyword TTYPE318 has different values: E a> S_GANSCL E b> S_FRINGE E Keyword TTYPE319 has different values: E a> S_GRPSCL E ? ^^ E b> S_GANSCL E ? ^^ E Keyword TTYPE320 has different values: E a> S_GUICDS E b> S_GRPSCL E Keyword TTYPE321 has different values: E a> S_IMPRNT E b> S_GUICDS E Keyword TTYPE322 has different values: E a> S_IPC E b> S_IMPRNT E Keyword TTYPE323 has different values: E a> S_JUMP E b> S_IPC E Keyword TTYPE324 has different values: E a> S_KLIP E b> S_JUMP E Keyword TTYPE325 has different values: E a> S_LASTFR E b> S_KLIP E Keyword TTYPE326 has different values: E a> S_LINEAR E b> S_LASTFR E Keyword TTYPE327 has different values: E a> S_MSBSUB E b> S_LINEAR E Keyword TTYPE328 has different values: E a> S_MRSMAT E b> S_MSBSUB E Keyword TTYPE329 has different values: E a> S_MSAFLG E b> S_MRSMAT E Keyword TTYPE330 has different values: E a> S_OUTLIR E b> S_MSAFLG E Keyword TTYPE331 has different values: E a> S_PTHLOS E b> S_OUTLIR E Keyword TTYPE332 has different values: E a> S_PERSIS E b> S_PTHLOS E Keyword TTYPE333 has different values: E a> S_PHOTOM E b> S_PERSIS E Keyword TTYPE334 has different values: E a> S_RAMP E b> S_PHOTOM E Keyword TTYPE335 has different values: E a> S_REFPIX E b> S_RAMP E Keyword TTYPE336 has different values: E a> S_RESAMP E b> S_REFPIX E Keyword TTYPE337 has different values: E a> S_RESET E b> S_RESAMP E Keyword TTYPE338 has different values: E a> S_RSCD E b> S_RESFRI E Keyword TTYPE339 has different values: E a> S_SATURA E b> S_RESET E Keyword TTYPE340 has different values: E a> S_SKYMAT E b> S_RSCD E Keyword TTYPE341 has different values: E a> S_SRCCAT E b> S_SATURA E Keyword TTYPE342 has different values: E a> S_SRCTYP E b> S_SKYMAT E Keyword TTYPE343 has different values: E a> S_PSFSTK E b> S_SRCCAT E Keyword TTYPE344 has different values: E a> S_STRAY E b> S_SRCTYP E Keyword TTYPE345 has different values: E a> S_SUPERB E b> S_PSFSTK E Keyword TTYPE346 has different values: E a> S_TSPHOT E b> S_STRAY E Keyword TTYPE347 has different values: E a> S_TWKREG E b> S_SUPERB E Keyword TTYPE348 has different values: E a> S_WAVCOR E b> S_TSPHOT E Keyword TTYPE349 has different values: E a> S_WFSCOM E b> S_TWKREG E Keyword TTYPE350 has different values: E a> S_WHTLIT E b> S_WAVCOR E Keyword TTYPE351 has different values: E a> BKGMETH E b> S_WFSCOM E Keyword TTYPE352 has different values: E a> BKGLEVEL E b> S_WHTLIT E Keyword TTYPE353 has different values: E a> BKGSUB E b> BKGMETH E Keyword TTYPE354 has different values: E a> BUNIT E b> BKGLEVEL E Keyword TTYPE355 has different values: E a> PHOTMJSR E b> BKGSUB E Keyword TTYPE356 has different values: E a> PHOTUJA2 E b> BUNIT E Keyword TTYPE357 has different values: E a> PIXAR_SR E b> PHOTMJSR E Keyword TTYPE358 has different values: E a> PIXAR_A2 E b> PHOTUJA2 E Keyword TTYPE359 has different values: E a> RADESYS E b> PIXAR_SR E Keyword TTYPE360 has different values: E a> RA_V1 E b> PIXAR_A2 E Keyword TTYPE361 has different values: E a> DEC_V1 E b> RADESYS E Keyword TTYPE362 has different values: E a> PA_V3 E b> RA_V1 E Keyword TTYPE363 has different values: E a> WCSAXES E b> DEC_V1 E Keyword TTYPE364 has different values: E a> CRPIX1 E b> PA_V3 E Keyword TTYPE365 has different values: E a> CRPIX2 E b> WCSAXES E Keyword TTYPE366 has different values: E a> CRPIX3 E ? ^ E b> CRPIX1 E ? ^ E Keyword TTYPE367 has different values: E a> CRVAL1 E b> CRPIX2 E Keyword TTYPE368 has different values: E a> CRVAL2 E b> CRPIX3 E Keyword TTYPE369 has different values: E a> CRVAL3 E ? ^ E b> CRVAL1 E ? ^ E Keyword TTYPE370 has different values: E a> CTYPE1 E b> CRVAL2 E Keyword TTYPE371 has different values: E a> CTYPE2 E b> CRVAL3 E Keyword TTYPE372 has different values: E a> CTYPE3 E ? ^ E b> CTYPE1 E ? ^ E Keyword TTYPE373 has different values: E a> CUNIT1 E b> CTYPE2 E Keyword TTYPE374 has different values: E a> CUNIT2 E b> CTYPE3 E Keyword TTYPE375 has different values: E a> CUNIT3 E ? ^ E b> CUNIT1 E ? ^ E Keyword TTYPE376 has different values: E a> CDELT1 E b> CUNIT2 E Keyword TTYPE377 has different values: E a> CDELT2 E b> CUNIT3 E Keyword TTYPE378 has different values: E a> CDELT3 E ? ^ E b> CDELT1 E ? ^ E Keyword TTYPE379 has different values: E a> PC1_1 E b> CDELT2 E Keyword TTYPE380 has different values: E a> PC1_2 E b> CDELT3 E Keyword TTYPE381 has different values: E a> PC1_3 E ? ^ E b> PC1_1 E ? ^ E Keyword TTYPE382 has different values: E a> PC2_1 E b> PC1_2 E Keyword TTYPE383 has different values: E a> PC2_2 E b> PC1_3 E Keyword TTYPE384 has different values: E a> PC2_3 E ? ^ E b> PC2_1 E ? ^ E Keyword TTYPE385 has different values: E a> PC3_1 E b> PC2_2 E Keyword TTYPE386 has different values: E a> PC3_2 E b> PC2_3 E Keyword TTYPE387 has different values: E a> PC3_3 E ? ^ E b> PC3_1 E ? ^ E Keyword TTYPE388 has different values: E a> CD1_1 E b> PC3_2 E Keyword TTYPE389 has different values: E a> CD1_2 E b> PC3_3 E Keyword TTYPE390 has different values: E a> CD2_1 E ? ^ E b> CD1_1 E ? ^ E Keyword TTYPE391 has different values: E a> CD2_2 E ? ^ E b> CD1_2 E ? ^ E Keyword TTYPE392 has different values: E a> S_REGION E b> CD2_1 E Keyword TTYPE393 has different values: E a> WAVSTART E b> CD2_2 E Keyword TTYPE394 has different values: E a> WAVEND E b> S_REGION E Keyword TTYPE395 has different values: E a> DISPAXIS E b> WAVSTART E Keyword TTYPE396 has different values: E a> SPORDER E b> WAVEND E Keyword TTYPE397 has different values: E a> V2_REF E b> DISPAXIS E Keyword TTYPE398 has different values: E a> V3_REF E b> SPORDER E Keyword TTYPE399 has different values: E a> VPARITY E b> V2_REF E Keyword TTYPE400 has different values: E a> V3I_YANG E b> V3_REF E Keyword TTYPE401 has different values: E a> RA_REF E b> VPARITY E Keyword TTYPE402 has different values: E a> DEC_REF E b> V3I_YANG E Keyword TTYPE403 has different values: E a> ROLL_REF E b> RA_REF E E Data contains differences: E Tables have different number of columns: E a: 403 E b: 405 E Extra column R_FRIFRQ of format D in b E Extra column S_RESFRI of format D in b E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f383bf4e310>.identical /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:38: AssertionError | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00443-x1d] | 0.17 | |
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run_pipeline = {'input': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pyt...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00443_nirspec_f170lp-g235m_x1d.fits'} suffix = 'x1d', source_id = 's00443' fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 5.1 E a: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s00443_nirspec_f170lp-g235m_x1d.fits E b: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s00443_nirspec_f170lp-g235m_x1d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (EXTRACT1D, 1): E E Headers contain differences: E Keyword SHUTSTA has different values: E a> 11x E b> x11 E Keyword SRCXPOS has different values: E a> -0.383899986743927 E b> -0.3514000177383423 E Keyword SRCYPOS has different values: E a> 1.644999980926514 E b> -0.3780999779701233 E E Data contains differences: E Column FLUX_ERROR data differs in row 468: E a> 137160.30871273065 E b> 137158.2089663644 E Column FLUX_VAR_POISSON data differs in row 478: E a> 31149950533.290394 E b> 31150334631.092846 E Column FLUX_VAR_POISSON data differs in row 854: E a> 2813272880.075601 E b> 2813306768.53031 E Column FLUX_VAR_RNOISE data differs in row 468: E a> 18203246414.486782 E b> 18202670486.06183 E 4 different table data element(s) found (0.02% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f381d2d4af0>.identical /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:38: AssertionError | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00482-s2d] | 0.50 | |
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run_pipeline = {'input': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pyt...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00482_nirspec_f170lp-g235m_s2d.fits'} suffix = 's2d', source_id = 's00482' fitsdiff_default_kwargs = {'atol': 1e-05, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 5.1 E a: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s00482_nirspec_f170lp-g235m_s2d.fits E b: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s00482_nirspec_f170lp-g235m_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 1e-05 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword SHUTSTA has different values: E a> 11x E b> x11 E Keyword SRCXPOS has different values: E a> -0.383899986743927 E b> -0.3514000177383423 E Keyword SRCYPOS has different values: E a> 1.644999980926514 E b> -0.3780999779701233 E E Data contains differences: E Data differs at [734, 3]: E a> 4444918000000.0 E ? --- E b> 4445374000000.0 E ? +++ E Data differs at [1103, 5]: E a> 4780798000.0 E ? ^^ ^ E b> 4781292000.0 E ? ^^ ^ E Data differs at [804, 8]: E a> 692447550.0 E b> 692604200.0 E Data differs at [849, 8]: E a> 292253340.0 E b> 292203100.0 E Data differs at [850, 8]: E a> 309857500.0 E b> 309823580.0 E Data differs at [1024, 8]: E a> 766796600.0 E b> 766713700.0 E Data differs at [1025, 8]: E a> 1084214500.0 E ? ^ -- E b> 1084067100.0 E ? ^^^ E Data differs at [1170, 8]: E a> 444070820.0 E b> 444007550.0 E Data differs at [1171, 8]: E a> 977789200.0 E ? ^ ^ E b> 977682200.0 E ? ^ ^ E Data differs at [655, 15]: E a> 1061520300.0 E b> 1061189100.0 E ... E 14 different pixels found (0.04% different). E E Extension HDU 2 (ERR, 1): E E Data contains differences: E Data differs at [388, 4]: E a> 2659289100000.0 E ? ^^^ E b> 2659571000000.0 E ? ^^ + E Data differs at [389, 4]: E a> 2644651800000.0 E b> 2644970300000.0 E Data differs at [390, 4]: E a> 2542429000000.0 E ? ^^^ E b> 2542783000000.0 E ? ^^^ E Data differs at [391, 4]: E a> 2380173100000.0 E b> 2380566400000.0 E Data differs at [392, 4]: E a> 2026998600000.0 E b> 2027409200000.0 E Data differs at [393, 4]: E a> 2285461000000.0 E ? ^ ^^ E b> 2285869500000.0 E ? ^ ^^ E Data differs at [394, 4]: E a> 1684310900000.0 E b> 1684856200000.0 E Data differs at [395, 4]: E a> 1186420900000.0 E ? ^^ ^ E b> 1187229200000.0 E ? ^ ^ + E Data differs at [396, 4]: E a> 576782000000.0 E b> 578036400000.0 E Data differs at [730, 4]: E a> 2417794700000.0 E b> 2418065800000.0 E ... E 87 different pixels found (0.24% different). E E Extension HDU 5 (VAR_POISSON, 1): E E Data contains differences: E Data differs at [58, 2]: E a> 4.724985e+18 E ? - ^^ E b> 4.729072e+18 E ? ^^^ E Data differs at [357, 2]: E a> 4.4744994e+18 E b> 4.4716783e+18 E Data differs at [359, 2]: E a> 1.1920791e+18 E ? --- E b> 1.1919215e+18 E ? ++ + E Data differs at [1086, 2]: E a> 3.7705284e+19 E b> 3.7625415e+19 E Data differs at [387, 4]: E a> 5.322239e+16 E ? ^^ E b> 5.323259e+16 E ? + ^ E Data differs at [388, 4]: E a> 1.2184658e+16 E b> 1.218713e+16 E Data differs at [395, 4]: E a> 2898283400000000.0 E b> 2902602000000000.0 E Data differs at [727, 4]: E a> 5.9855493e+16 E ? ---- E b> 5.98615e+16 E ? ++ E Data differs at [728, 4]: E a> 1.3693633e+16 E ? ^^^ E b> 1.3695143e+16 E ? ^^^ E Data differs at [461, 5]: E a> 1.7359703e+17 E ? - ^ E b> 1.7357353e+17 E ? ^^ E ... E 132 different pixels found (0.36% different). E E Extension HDU 6 (VAR_RNOISE, 1): E E Data contains differences: E Data differs at [357, 2]: E a> 3.2213808e+19 E b> 3.220761e+19 E Data differs at [1086, 2]: E a> 2.1367146e+19 E ? ^^ ^ E b> 2.1321886e+19 E ? ^ ^^ E Data differs at [423, 5]: E a> 8.23329e+18 E ? -- E b> 8.2345873e+18 E ? ++++ E Data differs at [469, 5]: E a> 2.108482e+19 E ? ^^ E b> 2.1081792e+19 E ? ^^^ E Data differs at [470, 5]: E a> 6.831217e+18 E b> 6.8304906e+18 E Data differs at [765, 5]: E a> 4.099863e+18 E ? ^^ E b> 4.0993287e+18 E ? ++ ^ E Data differs at [804, 9]: E a> 7.263169e+17 E b> 7.2643544e+17 E Data differs at [173, 15]: E a> 2.696037e+17 E b> 2.6955727e+17 E Data differs at [728, 15]: E a> 1.05991725e+18 E ? ^ - ^ E b> 1.0597128e+18 E ? ^ ^ E Data differs at [420, 16]: E a> 8.561116e+17 E b> 8.559694e+17 E ... E 22 different pixels found (0.06% different). E E Extension HDU 7 (VAR_FLAT, 1): E E Data contains differences: E Data differs at [379, 4]: E a> 1.5177812e+25 E ? ^ - E b> 1.5179381e+25 E ? ^^ E Data differs at [380, 4]: E a> 1.4063256e+25 E ? ^^ - E b> 1.4064795e+25 E ? ^^^ E Data differs at [381, 4]: E a> 1.2537335e+25 E ? ^^^ E b> 1.2538796e+25 E ? + ^^ E Data differs at [382, 4]: E a> 1.2280496e+25 E ? -- E b> 1.2282024e+25 E ? + + E Data differs at [383, 4]: E a> 1.121086e+25 E ? ^ - E b> 1.1212358e+25 E ? ^^^ E Data differs at [384, 4]: E a> 1.0898665e+25 E b> 1.0900235e+25 E Data differs at [385, 4]: E a> 1.0446992e+25 E ? -- E b> 1.0448629e+25 E ? + + E Data differs at [386, 4]: E a> 8.6795874e+24 E ? --- E b> 8.681074e+24 E ? ++ E Data differs at [387, 4]: E a> 8.3020736e+24 E ? --- E b> 8.3036497e+24 E ? +++ E Data differs at [388, 4]: E a> 7.0718164e+24 E ? --- E b> 7.073314e+24 E ? ++ E ... E 299 different pixels found (0.82% different). E E Extension HDU 8 (HDRTAB, 1): E E Headers contain differences: E Headers have different number of cards: E a: 816 E b: 820 E Extra keyword 'TTYPE404' in b: 'DEC_REF' E Extra keyword 'TTYPE405' in b: 'ROLL_REF' E Keyword TFIELDS has different values: E a> 403 E b> 405 E Keyword TTYPE263 has different values: E a> R_GAIN E b> R_FRIFRQ E Keyword TTYPE264 has different values: E a> R_IFUFOR E b> R_GAIN E Keyword TTYPE265 has different values: E a> R_IFUPOS E ? ^ ^ E b> R_IFUFOR E ? ^ ^ E Keyword TTYPE266 has different values: E a> R_IFUSLI E ? -- E b> R_IFUPOS E ? ++ E Keyword TTYPE267 has different values: E a> R_IPC E b> R_IFUSLI E Keyword TTYPE268 has different values: E a> R_LASTFR E b> R_IPC E Keyword TTYPE269 has different values: E a> R_LINEAR E b> R_LASTFR E Keyword TTYPE270 has different values: E a> R_MASK E b> R_LINEAR E Keyword TTYPE271 has different values: E a> R_MSA E b> R_MASK E Keyword TTYPE272 has different values: E a> R_OTE E b> R_MSA E Keyword TTYPE273 has different values: E a> R_PTHLOS E b> R_OTE E Keyword TTYPE274 has different values: E a> R_PERSAT E b> R_PTHLOS E Keyword TTYPE275 has different values: E a> R_PHOTOM E b> R_PERSAT E Keyword TTYPE276 has different values: E a> R_PSFMAS E b> R_PHOTOM E Keyword TTYPE277 has different values: E a> R_READNO E b> R_PSFMAS E Keyword TTYPE278 has different values: E a> R_REFPIX E b> R_READNO E Keyword TTYPE279 has different values: E a> R_REGION E b> R_REFPIX E Keyword TTYPE280 has different values: E a> R_RESAMP E b> R_REGION E Keyword TTYPE281 has different values: E a> R_RESOL E b> R_RESAMP E Keyword TTYPE282 has different values: E a> R_RESET E b> R_RESOL E Keyword TTYPE283 has different values: E a> R_RSCD E b> R_RESET E Keyword TTYPE284 has different values: E a> R_SATURA E b> R_RSCD E Keyword TTYPE285 has different values: E a> R_SPKERN E b> R_SATURA E Keyword TTYPE286 has different values: E a> R_SPPROF E b> R_SPKERN E Keyword TTYPE287 has different values: E a> R_SPTRAC E b> R_SPPROF E Keyword TTYPE288 has different values: E a> R_SPCWCS E b> R_SPTRAC E Keyword TTYPE289 has different values: E a> R_STRAY E b> R_SPCWCS E Keyword TTYPE290 has different values: E a> R_SUPERB E b> R_STRAY E Keyword TTYPE291 has different values: E a> R_THRPUT E b> R_SUPERB E Keyword TTYPE292 has different values: E a> R_TRPDEN E b> R_THRPUT E Keyword TTYPE293 has different values: E a> R_TRPPAR E b> R_TRPDEN E Keyword TTYPE294 has different values: E a> R_TSPHOT E b> R_TRPPAR E Keyword TTYPE295 has different values: E a> R_V2V3 E b> R_TSPHOT E Keyword TTYPE296 has different values: E a> R_WAVCOR E b> R_V2V3 E Keyword TTYPE297 has different values: E a> R_WAVRAN E ? -- E b> R_WAVCOR E ? ++ E Keyword TTYPE298 has different values: E a> R_WAVMAP E ? ^ ^ E b> R_WAVRAN E ? ^ ^ E Keyword TTYPE299 has different values: E a> S_PSFALI E b> R_WAVMAP E Keyword TTYPE300 has different values: E a> S_AMIANA E b> S_PSFALI E Keyword TTYPE301 has different values: E a> S_AMIAVG E ? ^^ E b> S_AMIANA E ? ^^ E Keyword TTYPE302 has different values: E a> S_AMINOR E b> S_AMIAVG E Keyword TTYPE303 has different values: E a> S_WCS E b> S_AMINOR E Keyword TTYPE304 has different values: E a> S_MTWCS E ? -- E b> S_WCS E Keyword TTYPE305 has different values: E a> S_BKDSUB E b> S_MTWCS E Keyword TTYPE306 has different values: E a> S_BARSHA E b> S_BKDSUB E Keyword TTYPE307 has different values: E a> S_COMB1D E b> S_BARSHA E Keyword TTYPE308 has different values: E a> S_IFUCUB E b> S_COMB1D E Keyword TTYPE309 has different values: E a> S_DARK E b> S_IFUCUB E Keyword TTYPE310 has different values: E a> S_DQINIT E b> S_DARK E Keyword TTYPE311 has different values: E a> S_TELEMI E b> S_DQINIT E Keyword TTYPE312 has different values: E a> S_ERRINI E b> S_TELEMI E Keyword TTYPE313 has different values: E a> S_EXTR1D E b> S_ERRINI E Keyword TTYPE314 has different values: E a> S_EXTR2D E ? ^ E b> S_EXTR1D E ? ^ E Keyword TTYPE315 has different values: E a> S_FRSTFR E b> S_EXTR2D E Keyword TTYPE316 has different values: E a> S_FLAT E b> S_FRSTFR E Keyword TTYPE317 has different values: E a> S_FRINGE E b> S_FLAT E Keyword TTYPE318 has different values: E a> S_GANSCL E b> S_FRINGE E Keyword TTYPE319 has different values: E a> S_GRPSCL E ? ^^ E b> S_GANSCL E ? ^^ E Keyword TTYPE320 has different values: E a> S_GUICDS E b> S_GRPSCL E Keyword TTYPE321 has different values: E a> S_IMPRNT E b> S_GUICDS E Keyword TTYPE322 has different values: E a> S_IPC E b> S_IMPRNT E Keyword TTYPE323 has different values: E a> S_JUMP E b> S_IPC E Keyword TTYPE324 has different values: E a> S_KLIP E b> S_JUMP E Keyword TTYPE325 has different values: E a> S_LASTFR E b> S_KLIP E Keyword TTYPE326 has different values: E a> S_LINEAR E b> S_LASTFR E Keyword TTYPE327 has different values: E a> S_MSBSUB E b> S_LINEAR E Keyword TTYPE328 has different values: E a> S_MRSMAT E b> S_MSBSUB E Keyword TTYPE329 has different values: E a> S_MSAFLG E b> S_MRSMAT E Keyword TTYPE330 has different values: E a> S_OUTLIR E b> S_MSAFLG E Keyword TTYPE331 has different values: E a> S_PTHLOS E b> S_OUTLIR E Keyword TTYPE332 has different values: E a> S_PERSIS E b> S_PTHLOS E Keyword TTYPE333 has different values: E a> S_PHOTOM E b> S_PERSIS E Keyword TTYPE334 has different values: E a> S_RAMP E b> S_PHOTOM E Keyword TTYPE335 has different values: E a> S_REFPIX E b> S_RAMP E Keyword TTYPE336 has different values: E a> S_RESAMP E b> S_REFPIX E Keyword TTYPE337 has different values: E a> S_RESET E b> S_RESAMP E Keyword TTYPE338 has different values: E a> S_RSCD E b> S_RESFRI E Keyword TTYPE339 has different values: E a> S_SATURA E b> S_RESET E Keyword TTYPE340 has different values: E a> S_SKYMAT E b> S_RSCD E Keyword TTYPE341 has different values: E a> S_SRCCAT E b> S_SATURA E Keyword TTYPE342 has different values: E a> S_SRCTYP E b> S_SKYMAT E Keyword TTYPE343 has different values: E a> S_PSFSTK E b> S_SRCCAT E Keyword TTYPE344 has different values: E a> S_STRAY E b> S_SRCTYP E Keyword TTYPE345 has different values: E a> S_SUPERB E b> S_PSFSTK E Keyword TTYPE346 has different values: E a> S_TSPHOT E b> S_STRAY E Keyword TTYPE347 has different values: E a> S_TWKREG E b> S_SUPERB E Keyword TTYPE348 has different values: E a> S_WAVCOR E b> S_TSPHOT E Keyword TTYPE349 has different values: E a> S_WFSCOM E b> S_TWKREG E Keyword TTYPE350 has different values: E a> S_WHTLIT E b> S_WAVCOR E Keyword TTYPE351 has different values: E a> BKGMETH E b> S_WFSCOM E Keyword TTYPE352 has different values: E a> BKGLEVEL E b> S_WHTLIT E Keyword TTYPE353 has different values: E a> BKGSUB E b> BKGMETH E Keyword TTYPE354 has different values: E a> BUNIT E b> BKGLEVEL E Keyword TTYPE355 has different values: E a> PHOTMJSR E b> BKGSUB E Keyword TTYPE356 has different values: E a> PHOTUJA2 E b> BUNIT E Keyword TTYPE357 has different values: E a> PIXAR_SR E b> PHOTMJSR E Keyword TTYPE358 has different values: E a> PIXAR_A2 E b> PHOTUJA2 E Keyword TTYPE359 has different values: E a> RADESYS E b> PIXAR_SR E Keyword TTYPE360 has different values: E a> RA_V1 E b> PIXAR_A2 E Keyword TTYPE361 has different values: E a> DEC_V1 E b> RADESYS E Keyword TTYPE362 has different values: E a> PA_V3 E b> RA_V1 E Keyword TTYPE363 has different values: E a> WCSAXES E b> DEC_V1 E Keyword TTYPE364 has different values: E a> CRPIX1 E b> PA_V3 E Keyword TTYPE365 has different values: E a> CRPIX2 E b> WCSAXES E Keyword TTYPE366 has different values: E a> CRPIX3 E ? ^ E b> CRPIX1 E ? ^ E Keyword TTYPE367 has different values: E a> CRVAL1 E b> CRPIX2 E Keyword TTYPE368 has different values: E a> CRVAL2 E b> CRPIX3 E Keyword TTYPE369 has different values: E a> CRVAL3 E ? ^ E b> CRVAL1 E ? ^ E Keyword TTYPE370 has different values: E a> CTYPE1 E b> CRVAL2 E Keyword TTYPE371 has different values: E a> CTYPE2 E b> CRVAL3 E Keyword TTYPE372 has different values: E a> CTYPE3 E ? ^ E b> CTYPE1 E ? ^ E Keyword TTYPE373 has different values: E a> CUNIT1 E b> CTYPE2 E Keyword TTYPE374 has different values: E a> CUNIT2 E b> CTYPE3 E Keyword TTYPE375 has different values: E a> CUNIT3 E ? ^ E b> CUNIT1 E ? ^ E Keyword TTYPE376 has different values: E a> CDELT1 E b> CUNIT2 E Keyword TTYPE377 has different values: E a> CDELT2 E b> CUNIT3 E Keyword TTYPE378 has different values: E a> CDELT3 E ? ^ E b> CDELT1 E ? ^ E Keyword TTYPE379 has different values: E a> PC1_1 E b> CDELT2 E Keyword TTYPE380 has different values: E a> PC1_2 E b> CDELT3 E Keyword TTYPE381 has different values: E a> PC1_3 E ? ^ E b> PC1_1 E ? ^ E Keyword TTYPE382 has different values: E a> PC2_1 E b> PC1_2 E Keyword TTYPE383 has different values: E a> PC2_2 E b> PC1_3 E Keyword TTYPE384 has different values: E a> PC2_3 E ? ^ E b> PC2_1 E ? ^ E Keyword TTYPE385 has different values: E a> PC3_1 E b> PC2_2 E Keyword TTYPE386 has different values: E a> PC3_2 E b> PC2_3 E Keyword TTYPE387 has different values: E a> PC3_3 E ? ^ E b> PC3_1 E ? ^ E Keyword TTYPE388 has different values: E a> CD1_1 E b> PC3_2 E Keyword TTYPE389 has different values: E a> CD1_2 E b> PC3_3 E Keyword TTYPE390 has different values: E a> CD2_1 E ? ^ E b> CD1_1 E ? ^ E Keyword TTYPE391 has different values: E a> CD2_2 E ? ^ E b> CD1_2 E ? ^ E Keyword TTYPE392 has different values: E a> S_REGION E b> CD2_1 E Keyword TTYPE393 has different values: E a> WAVSTART E b> CD2_2 E Keyword TTYPE394 has different values: E a> WAVEND E b> S_REGION E Keyword TTYPE395 has different values: E a> DISPAXIS E b> WAVSTART E Keyword TTYPE396 has different values: E a> SPORDER E b> WAVEND E Keyword TTYPE397 has different values: E a> V2_REF E b> DISPAXIS E Keyword TTYPE398 has different values: E a> V3_REF E b> SPORDER E Keyword TTYPE399 has different values: E a> VPARITY E b> V2_REF E Keyword TTYPE400 has different values: E a> V3I_YANG E b> V3_REF E Keyword TTYPE401 has different values: E a> RA_REF E b> VPARITY E Keyword TTYPE402 has different values: E a> DEC_REF E b> V3I_YANG E Keyword TTYPE403 has different values: E a> ROLL_REF E b> RA_REF E E Data contains differences: E Tables have different number of columns: E a: 403 E b: 405 E Extra column R_FRIFRQ of format D in b E Extra column S_RESFRI of format D in b E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f381adcd550>.identical /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:38: AssertionError | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00482-x1d] | 0.17 | |
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run_pipeline = {'input': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pyt...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00482_nirspec_f170lp-g235m_x1d.fits'} suffix = 'x1d', source_id = 's00482' fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 5.1 E a: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s00482_nirspec_f170lp-g235m_x1d.fits E b: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s00482_nirspec_f170lp-g235m_x1d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (EXTRACT1D, 1): E E Headers contain differences: E Keyword SHUTSTA has different values: E a> 11x E b> x11 E Keyword SRCXPOS has different values: E a> -0.383899986743927 E b> -0.3514000177383423 E Keyword SRCYPOS has different values: E a> 1.644999980926514 E b> -0.3780999779701233 E E Data contains differences: E Column FLUX data differs in row 512: E a> 65518678.729559414 E b> 65517679.87625352 E Column FLUX data differs in row 520: E a> 67463274.83689904 E b> 67462073.28740132 E Column FLUX data differs in row 524: E a> 63979431.357598074 E b> 63978765.844502166 E Column FLUX data differs in row 528: E a> 62100080.62661202 E b> 62099447.1201573 E Column FLUX data differs in row 530: E a> 66687459.123429336 E b> 66686748.903026186 E Column FLUX data differs in row 547: E a> 79914234.06109816 E b> 79913248.00924532 E Column FLUX data differs in row 778: E a> 28850070.10779329 E b> 28848369.582927685 E Column FLUX data differs in row 971: E a> 44303514.186343834 E b> 44303025.841747835 E Column FLUX data differs in row 1130: E a> 27928170.466189384 E b> 27927799.94685922 E Column FLUX_VAR_POISSON data differs in row 482: E a> 1008359662.9282081 E b> 1008344609.5026777 E ...16 additional difference(s) found. E ... E 26 different table data element(s) found (0.11% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f383939e4f0>.identical /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:38: AssertionError | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s02315-s2d] | 0.50 | |
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run_pipeline = {'input': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pyt...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s02315_nirspec_f170lp-g235m_s2d.fits'} suffix = 's2d', source_id = 's02315' fitsdiff_default_kwargs = {'atol': 1e-05, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 5.1 E a: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s02315_nirspec_f170lp-g235m_s2d.fits E b: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s02315_nirspec_f170lp-g235m_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 1e-05 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword SHUTSTA has different values: E a> 11x E b> x11 E Keyword SRCXPOS has different values: E a> -0.383899986743927 E b> -0.3514000177383423 E Keyword SRCYPOS has different values: E a> 1.644999980926514 E b> -0.3780999779701233 E E Data contains differences: E Data differs at [134, 6]: E a> 0.8290226 E b> 0.82934254 E Data differs at [135, 6]: E a> 1.420005 E b> 1.4202758 E Data differs at [136, 6]: E a> 1.7680572 E b> 1.768268 E Data differs at [236, 6]: E a> 0.89080334 E b> 0.8911224 E Data differs at [237, 6]: E a> 1.7333281 E b> 1.7336864 E Data differs at [238, 6]: E a> 2.1571372 E ? ^ - E b> 2.1574237 E ? ^^ E Data differs at [348, 6]: E a> 1.3607224 E b> 1.3610481 E Data differs at [349, 6]: E a> 1.9901901 E b> 1.9905708 E Data differs at [350, 6]: E a> 2.5105054 E b> 2.5108113 E Data differs at [474, 6]: E a> 1.8324301 E b> 1.8326571 E ... E 21 different pixels found (0.05% different). E E Extension HDU 2 (ERR, 1): E E Data contains differences: E Data differs at [814, 3]: E a> 7.2939143 E b> 7.292935 E Data differs at [819, 4]: E a> 57.185074 E b> 57.191124 E Data differs at [356, 5]: E a> 62.530716 E b> 62.540833 E Data differs at [357, 5]: E a> 25.85721 E b> 25.863117 E Data differs at [1054, 5]: E a> 117.90514 E b> 117.92234 E Data differs at [1055, 5]: E a> 56.821426 E b> 56.831135 E Data differs at [1056, 5]: E a> 9.109555 E b> 9.110574 E Data differs at [1057, 5]: E a> 9.387365 E ? ^ - E b> 9.38835 E ? ^ E Data differs at [473, 6]: E a> 7.742316 E b> 7.7442603 E Data differs at [474, 6]: E a> 12.089033 E b> 12.092265 E ... E 138 different pixels found (0.34% different). E E Extension HDU 3 (WHT, 1): E E Data contains differences: E Data differs at [52, 2]: E a> 2.0437586 E b> 2.0435033 E Data differs at [53, 2]: E a> 2.427431 E b> 2.4270368 E Data differs at [54, 2]: E a> 1.7796459 E b> 1.7792058 E Data differs at [55, 2]: E a> 0.85061747 E b> 0.85018283 E Data differs at [56, 2]: E a> 0.0801094 E b> 0.07993581 E Data differs at [148, 2]: E a> 3.0700672 E b> 3.0696752 E Data differs at [149, 2]: E a> 2.537709 E b> 2.5372808 E Data differs at [150, 2]: E a> 1.7710763 E b> 1.7706277 E Data differs at [151, 2]: E a> 0.3381698 E b> 0.33804235 E Data differs at [152, 2]: E a> 0.03452102 E b> 0.03439661 E ... E 149 different pixels found (0.37% different). E E Extension HDU 5 (VAR_POISSON, 1): E E Data contains differences: E Data differs at [491, 28]: E a> 0.06439006 E b> 0.064414054 E 1 different pixels found (0.00% different). E E Extension HDU 6 (VAR_RNOISE, 1): E E Data contains differences: E Data differs at [152, 2]: E a> 0.27292347 E b> 0.27309582 E Data differs at [796, 13]: E a> 0.0037940233 E b> 0.0037640801 E Data differs at [491, 28]: E a> 0.11344154 E ? - E b> 0.113413654 E ? ++ E 3 different pixels found (0.01% different). E E Extension HDU 7 (VAR_FLAT, 1): E E Data contains differences: E Data differs at [256, 2]: E a> 25828.791 E b> 25825.15 E Data differs at [831, 2]: E a> 185925.47 E b> 185891.39 E Data differs at [1097, 2]: E a> 85832.51 E b> 85821.375 E Data differs at [814, 3]: E a> 53.007645 E b> 52.993355 E Data differs at [250, 4]: E a> 946.41504 E b> 946.52203 E Data differs at [364, 4]: E a> 1477.6146 E b> 1477.7909 E Data differs at [491, 4]: E a> 1205.5356 E b> 1205.7498 E Data differs at [492, 4]: E a> 1519.2799 E b> 1519.5072 E Data differs at [493, 4]: E a> 1746.5989 E b> 1746.8087 E Data differs at [494, 4]: E a> 2124.4631 E ? - ^ E b> 2124.6833 E ? + ^ E ... E 356 different pixels found (0.89% different). E E Extension HDU 8 (HDRTAB, 1): E E Headers contain differences: E Headers have different number of cards: E a: 816 E b: 820 E Extra keyword 'TTYPE404' in b: 'DEC_REF' E Extra keyword 'TTYPE405' in b: 'ROLL_REF' E Keyword TFIELDS has different values: E a> 403 E b> 405 E Keyword TTYPE263 has different values: E a> R_GAIN E b> R_FRIFRQ E Keyword TTYPE264 has different values: E a> R_IFUFOR E b> R_GAIN E Keyword TTYPE265 has different values: E a> R_IFUPOS E ? ^ ^ E b> R_IFUFOR E ? ^ ^ E Keyword TTYPE266 has different values: E a> R_IFUSLI E ? -- E b> R_IFUPOS E ? ++ E Keyword TTYPE267 has different values: E a> R_IPC E b> R_IFUSLI E Keyword TTYPE268 has different values: E a> R_LASTFR E b> R_IPC E Keyword TTYPE269 has different values: E a> R_LINEAR E b> R_LASTFR E Keyword TTYPE270 has different values: E a> R_MASK E b> R_LINEAR E Keyword TTYPE271 has different values: E a> R_MSA E b> R_MASK E Keyword TTYPE272 has different values: E a> R_OTE E b> R_MSA E Keyword TTYPE273 has different values: E a> R_PTHLOS E b> R_OTE E Keyword TTYPE274 has different values: E a> R_PERSAT E b> R_PTHLOS E Keyword TTYPE275 has different values: E a> R_PHOTOM E b> R_PERSAT E Keyword TTYPE276 has different values: E a> R_PSFMAS E b> R_PHOTOM E Keyword TTYPE277 has different values: E a> R_READNO E b> R_PSFMAS E Keyword TTYPE278 has different values: E a> R_REFPIX E b> R_READNO E Keyword TTYPE279 has different values: E a> R_REGION E b> R_REFPIX E Keyword TTYPE280 has different values: E a> R_RESAMP E b> R_REGION E Keyword TTYPE281 has different values: E a> R_RESOL E b> R_RESAMP E Keyword TTYPE282 has different values: E a> R_RESET E b> R_RESOL E Keyword TTYPE283 has different values: E a> R_RSCD E b> R_RESET E Keyword TTYPE284 has different values: E a> R_SATURA E b> R_RSCD E Keyword TTYPE285 has different values: E a> R_SPKERN E b> R_SATURA E Keyword TTYPE286 has different values: E a> R_SPPROF E b> R_SPKERN E Keyword TTYPE287 has different values: E a> R_SPTRAC E b> R_SPPROF E Keyword TTYPE288 has different values: E a> R_SPCWCS E b> R_SPTRAC E Keyword TTYPE289 has different values: E a> R_STRAY E b> R_SPCWCS E Keyword TTYPE290 has different values: E a> R_SUPERB E b> R_STRAY E Keyword TTYPE291 has different values: E a> R_THRPUT E b> R_SUPERB E Keyword TTYPE292 has different values: E a> R_TRPDEN E b> R_THRPUT E Keyword TTYPE293 has different values: E a> R_TRPPAR E b> R_TRPDEN E Keyword TTYPE294 has different values: E a> R_TSPHOT E b> R_TRPPAR E Keyword TTYPE295 has different values: E a> R_V2V3 E b> R_TSPHOT E Keyword TTYPE296 has different values: E a> R_WAVCOR E b> R_V2V3 E Keyword TTYPE297 has different values: E a> R_WAVRAN E ? -- E b> R_WAVCOR E ? ++ E Keyword TTYPE298 has different values: E a> R_WAVMAP E ? ^ ^ E b> R_WAVRAN E ? ^ ^ E Keyword TTYPE299 has different values: E a> S_PSFALI E b> R_WAVMAP E Keyword TTYPE300 has different values: E a> S_AMIANA E b> S_PSFALI E Keyword TTYPE301 has different values: E a> S_AMIAVG E ? ^^ E b> S_AMIANA E ? ^^ E Keyword TTYPE302 has different values: E a> S_AMINOR E b> S_AMIAVG E Keyword TTYPE303 has different values: E a> S_WCS E b> S_AMINOR E Keyword TTYPE304 has different values: E a> S_MTWCS E ? -- E b> S_WCS E Keyword TTYPE305 has different values: E a> S_BKDSUB E b> S_MTWCS E Keyword TTYPE306 has different values: E a> S_BARSHA E b> S_BKDSUB E Keyword TTYPE307 has different values: E a> S_COMB1D E b> S_BARSHA E Keyword TTYPE308 has different values: E a> S_IFUCUB E b> S_COMB1D E Keyword TTYPE309 has different values: E a> S_DARK E b> S_IFUCUB E Keyword TTYPE310 has different values: E a> S_DQINIT E b> S_DARK E Keyword TTYPE311 has different values: E a> S_TELEMI E b> S_DQINIT E Keyword TTYPE312 has different values: E a> S_ERRINI E b> S_TELEMI E Keyword TTYPE313 has different values: E a> S_EXTR1D E b> S_ERRINI E Keyword TTYPE314 has different values: E a> S_EXTR2D E ? ^ E b> S_EXTR1D E ? ^ E Keyword TTYPE315 has different values: E a> S_FRSTFR E b> S_EXTR2D E Keyword TTYPE316 has different values: E a> S_FLAT E b> S_FRSTFR E Keyword TTYPE317 has different values: E a> S_FRINGE E b> S_FLAT E Keyword TTYPE318 has different values: E a> S_GANSCL E b> S_FRINGE E Keyword TTYPE319 has different values: E a> S_GRPSCL E ? ^^ E b> S_GANSCL E ? ^^ E Keyword TTYPE320 has different values: E a> S_GUICDS E b> S_GRPSCL E Keyword TTYPE321 has different values: E a> S_IMPRNT E b> S_GUICDS E Keyword TTYPE322 has different values: E a> S_IPC E b> S_IMPRNT E Keyword TTYPE323 has different values: E a> S_JUMP E b> S_IPC E Keyword TTYPE324 has different values: E a> S_KLIP E b> S_JUMP E Keyword TTYPE325 has different values: E a> S_LASTFR E b> S_KLIP E Keyword TTYPE326 has different values: E a> S_LINEAR E b> S_LASTFR E Keyword TTYPE327 has different values: E a> S_MSBSUB E b> S_LINEAR E Keyword TTYPE328 has different values: E a> S_MRSMAT E b> S_MSBSUB E Keyword TTYPE329 has different values: E a> S_MSAFLG E b> S_MRSMAT E Keyword TTYPE330 has different values: E a> S_OUTLIR E b> S_MSAFLG E Keyword TTYPE331 has different values: E a> S_PTHLOS E b> S_OUTLIR E Keyword TTYPE332 has different values: E a> S_PERSIS E b> S_PTHLOS E Keyword TTYPE333 has different values: E a> S_PHOTOM E b> S_PERSIS E Keyword TTYPE334 has different values: E a> S_RAMP E b> S_PHOTOM E Keyword TTYPE335 has different values: E a> S_REFPIX E b> S_RAMP E Keyword TTYPE336 has different values: E a> S_RESAMP E b> S_REFPIX E Keyword TTYPE337 has different values: E a> S_RESET E b> S_RESAMP E Keyword TTYPE338 has different values: E a> S_RSCD E b> S_RESFRI E Keyword TTYPE339 has different values: E a> S_SATURA E b> S_RESET E Keyword TTYPE340 has different values: E a> S_SKYMAT E b> S_RSCD E Keyword TTYPE341 has different values: E a> S_SRCCAT E b> S_SATURA E Keyword TTYPE342 has different values: E a> S_SRCTYP E b> S_SKYMAT E Keyword TTYPE343 has different values: E a> S_PSFSTK E b> S_SRCCAT E Keyword TTYPE344 has different values: E a> S_STRAY E b> S_SRCTYP E Keyword TTYPE345 has different values: E a> S_SUPERB E b> S_PSFSTK E Keyword TTYPE346 has different values: E a> S_TSPHOT E b> S_STRAY E Keyword TTYPE347 has different values: E a> S_TWKREG E b> S_SUPERB E Keyword TTYPE348 has different values: E a> S_WAVCOR E b> S_TSPHOT E Keyword TTYPE349 has different values: E a> S_WFSCOM E b> S_TWKREG E Keyword TTYPE350 has different values: E a> S_WHTLIT E b> S_WAVCOR E Keyword TTYPE351 has different values: E a> BKGMETH E b> S_WFSCOM E Keyword TTYPE352 has different values: E a> BKGLEVEL E b> S_WHTLIT E Keyword TTYPE353 has different values: E a> BKGSUB E b> BKGMETH E Keyword TTYPE354 has different values: E a> BUNIT E b> BKGLEVEL E Keyword TTYPE355 has different values: E a> PHOTMJSR E b> BKGSUB E Keyword TTYPE356 has different values: E a> PHOTUJA2 E b> BUNIT E Keyword TTYPE357 has different values: E a> PIXAR_SR E b> PHOTMJSR E Keyword TTYPE358 has different values: E a> PIXAR_A2 E b> PHOTUJA2 E Keyword TTYPE359 has different values: E a> RADESYS E b> PIXAR_SR E Keyword TTYPE360 has different values: E a> RA_V1 E b> PIXAR_A2 E Keyword TTYPE361 has different values: E a> DEC_V1 E b> RADESYS E Keyword TTYPE362 has different values: E a> PA_V3 E b> RA_V1 E Keyword TTYPE363 has different values: E a> WCSAXES E b> DEC_V1 E Keyword TTYPE364 has different values: E a> CRPIX1 E b> PA_V3 E Keyword TTYPE365 has different values: E a> CRPIX2 E b> WCSAXES E Keyword TTYPE366 has different values: E a> CRPIX3 E ? ^ E b> CRPIX1 E ? ^ E Keyword TTYPE367 has different values: E a> CRVAL1 E b> CRPIX2 E Keyword TTYPE368 has different values: E a> CRVAL2 E b> CRPIX3 E Keyword TTYPE369 has different values: E a> CRVAL3 E ? ^ E b> CRVAL1 E ? ^ E Keyword TTYPE370 has different values: E a> CTYPE1 E b> CRVAL2 E Keyword TTYPE371 has different values: E a> CTYPE2 E b> CRVAL3 E Keyword TTYPE372 has different values: E a> CTYPE3 E ? ^ E b> CTYPE1 E ? ^ E Keyword TTYPE373 has different values: E a> CUNIT1 E b> CTYPE2 E Keyword TTYPE374 has different values: E a> CUNIT2 E b> CTYPE3 E Keyword TTYPE375 has different values: E a> CUNIT3 E ? ^ E b> CUNIT1 E ? ^ E Keyword TTYPE376 has different values: E a> CDELT1 E b> CUNIT2 E Keyword TTYPE377 has different values: E a> CDELT2 E b> CUNIT3 E Keyword TTYPE378 has different values: E a> CDELT3 E ? ^ E b> CDELT1 E ? ^ E Keyword TTYPE379 has different values: E a> PC1_1 E b> CDELT2 E Keyword TTYPE380 has different values: E a> PC1_2 E b> CDELT3 E Keyword TTYPE381 has different values: E a> PC1_3 E ? ^ E b> PC1_1 E ? ^ E Keyword TTYPE382 has different values: E a> PC2_1 E b> PC1_2 E Keyword TTYPE383 has different values: E a> PC2_2 E b> PC1_3 E Keyword TTYPE384 has different values: E a> PC2_3 E ? ^ E b> PC2_1 E ? ^ E Keyword TTYPE385 has different values: E a> PC3_1 E b> PC2_2 E Keyword TTYPE386 has different values: E a> PC3_2 E b> PC2_3 E Keyword TTYPE387 has different values: E a> PC3_3 E ? ^ E b> PC3_1 E ? ^ E Keyword TTYPE388 has different values: E a> CD1_1 E b> PC3_2 E Keyword TTYPE389 has different values: E a> CD1_2 E b> PC3_3 E Keyword TTYPE390 has different values: E a> CD2_1 E ? ^ E b> CD1_1 E ? ^ E Keyword TTYPE391 has different values: E a> CD2_2 E ? ^ E b> CD1_2 E ? ^ E Keyword TTYPE392 has different values: E a> S_REGION E b> CD2_1 E Keyword TTYPE393 has different values: E a> WAVSTART E b> CD2_2 E Keyword TTYPE394 has different values: E a> WAVEND E b> S_REGION E Keyword TTYPE395 has different values: E a> DISPAXIS E b> WAVSTART E Keyword TTYPE396 has different values: E a> SPORDER E b> WAVEND E Keyword TTYPE397 has different values: E a> V2_REF E b> DISPAXIS E Keyword TTYPE398 has different values: E a> V3_REF E b> SPORDER E Keyword TTYPE399 has different values: E a> VPARITY E b> V2_REF E Keyword TTYPE400 has different values: E a> V3I_YANG E b> V3_REF E Keyword TTYPE401 has different values: E a> RA_REF E b> VPARITY E Keyword TTYPE402 has different values: E a> DEC_REF E b> V3I_YANG E Keyword TTYPE403 has different values: E a> ROLL_REF E b> RA_REF E E Data contains differences: E Tables have different number of columns: E a: 403 E b: 405 E Extra column R_FRIFRQ of format D in b E Extra column S_RESFRI of format D in b E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f37e8bcc9a0>.identical /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:38: AssertionError | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s02315-x1d] | 0.43 | |
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run_pipeline = {'input': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pyt...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s02315_nirspec_f170lp-g235m_x1d.fits'} suffix = 'x1d', source_id = 's02315' fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 5.1 E a: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s02315_nirspec_f170lp-g235m_x1d.fits E b: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s02315_nirspec_f170lp-g235m_x1d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (EXTRACT1D, 1): E E Headers contain differences: E Keyword SHUTSTA has different values: E a> 11x E b> x11 E Keyword SRCXPOS has different values: E a> -0.383899986743927 E b> -0.3514000177383423 E Keyword SRCYPOS has different values: E a> 1.644999980926514 E b> -0.3780999779701233 E E Data contains differences: E Column FLUX data differs in row 82: E a> 6003824.355168035 E b> 6003763.984073885 E Column FLUX data differs in row 85: E a> 6324987.915199017 E b> 6324923.399806721 E Column FLUX data differs in row 88: E a> 5987390.014663106 E b> 5987328.728166176 E Column FLUX data differs in row 89: E a> 6054374.671832193 E b> 6054311.8512723595 E Column FLUX data differs in row 90: E a> 6403920.720767928 E b> 6403848.136484157 E Column FLUX data differs in row 91: E a> 6256856.04516184 E b> 6256788.062368287 E Column FLUX data differs in row 92: E a> 6177578.3613848025 E b> 6177508.611785014 E Column FLUX data differs in row 93: E a> 6410638.86511256 E b> 6410564.479971072 E Column FLUX data differs in row 94: E a> 6432365.852844669 E b> 6432288.91317267 E Column FLUX data differs in row 95: E a> 6850368.697254455 E b> 6850283.515668709 E ...732 additional difference(s) found. E ... E 742 different table data element(s) found (2.87% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f385201acd0>.identical /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:38: AssertionError | |||
| Skipped | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_ifu_spec2.py::test_spec2[assign_wcs] | 0.00 | |
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('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/ci_watson/plugin.py', 63, 'Skipped: need --slow option to run') | |||
| Skipped | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_ifu_spec2.py::test_spec2[cal] | 0.00 | |
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('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/ci_watson/plugin.py', 63, 'Skipped: need --slow option to run') | |||
| Skipped | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_ifu_spec2.py::test_spec2[flat_field] | 0.00 | |
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('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/ci_watson/plugin.py', 63, 'Skipped: need --slow option to run') | |||
| Skipped | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_ifu_spec2.py::test_spec2[imprint_subtract] | 0.00 | |
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('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/ci_watson/plugin.py', 63, 'Skipped: need --slow option to run') | |||
| Skipped | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_ifu_spec2.py::test_spec2[msa_flagging] | 0.00 | |
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('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/ci_watson/plugin.py', 63, 'Skipped: need --slow option to run') | |||
| Skipped | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_ifu_spec2.py::test_spec2[pathloss] | 0.00 | |
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('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/ci_watson/plugin.py', 63, 'Skipped: need --slow option to run') | |||
| Skipped | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_ifu_spec2.py::test_spec2[photom] | 0.00 | |
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('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/ci_watson/plugin.py', 63, 'Skipped: need --slow option to run') | |||
| Skipped | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_ifu_spec2.py::test_spec2[s3d] | 0.00 | |
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('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/ci_watson/plugin.py', 63, 'Skipped: need --slow option to run') | |||
| Skipped | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_ifu_spec2.py::test_spec2[srctype] | 0.00 | |
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('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/ci_watson/plugin.py', 63, 'Skipped: need --slow option to run') | |||
| Skipped | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_ifu_spec2.py::test_spec2[x1d] | 0.00 | |
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('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/ci_watson/plugin.py', 63, 'Skipped: need --slow option to run') | |||
| Skipped | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_ifu_spec3.py::test_spec3_multi[jw00626009002_02101_00001_nrs1_o009_crf.fits] | 0.00 | |
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('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/ci_watson/plugin.py', 63, 'Skipped: need --slow option to run') | |||
| Skipped | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_ifu_spec3.py::test_spec3_multi[jw00626009002_02101_00001_nrs2_o009_crf.fits] | 0.00 | |
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('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/ci_watson/plugin.py', 63, 'Skipped: need --slow option to run') | |||
| Skipped | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_ifu_spec3.py::test_spec3_multi[single_nrs1-nrs2_g395h-f290lp_s3d.fits] | 0.00 | |
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('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/ci_watson/plugin.py', 63, 'Skipped: need --slow option to run') | |||
| Skipped | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_ifu_spec3.py::test_spec3_multi[single_nrs1-nrs2_g395h-f290lp_x1d.fits] | 0.00 | |
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('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/ci_watson/plugin.py', 63, 'Skipped: need --slow option to run') | |||
| Skipped | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_steps_spec2.py::test_ff_inv | 0.00 | |
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('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/ci_watson/plugin.py', 63, 'Skipped: need --slow option to run') | |||
| Skipped | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_steps_spec2.py::test_pathloss_corrpars | 0.00 | |
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('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/ci_watson/plugin.py', 63, 'Skipped: need --slow option to run') | |||
| Skipped | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_steps_spec2.py::test_pathloss_inverse | 0.00 | |
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('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/ci_watson/plugin.py', 63, 'Skipped: need --slow option to run') | |||
| Skipped | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_steps_spec2.py::test_pathloss_source_type | 0.00 | |
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('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/ci_watson/plugin.py', 63, 'Skipped: need --slow option to run') | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_brightobj.py::test_nirspec_brightobj_spec2[assign_wcs] | 34.77 | |
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-----------------------------Captured stderr setup------------------------------ 2022-10-06 04:20:30,458 - stpipe.Spec2Pipeline - INFO - Spec2Pipeline instance created. 2022-10-06 04:20:30,459 - stpipe.Spec2Pipeline.bkg_subtract - INFO - BackgroundStep instance created. 2022-10-06 04:20:30,460 - stpipe.Spec2Pipeline.assign_wcs - INFO - AssignWcsStep instance created. 2022-10-06 04:20:30,461 - stpipe.Spec2Pipeline.imprint_subtract - INFO - ImprintStep instance created. 2022-10-06 04:20:30,461 - stpipe.Spec2Pipeline.msa_flagging - INFO - MSAFlagOpenStep instance created. 2022-10-06 04:20:30,462 - stpipe.Spec2Pipeline.extract_2d - INFO - Extract2dStep instance created. 2022-10-06 04:20:30,465 - stpipe.Spec2Pipeline.master_background_mos - INFO - MasterBackgroundMosStep instance created. 2022-10-06 04:20:30,465 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - FlatFieldStep instance created. 2022-10-06 04:20:30,466 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - PathLossStep instance created. 2022-10-06 04:20:30,467 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - BarShadowStep instance created. 2022-10-06 04:20:30,467 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - PhotomStep instance created. 2022-10-06 04:20:30,468 - stpipe.Spec2Pipeline.wavecorr - INFO - WavecorrStep instance created. 2022-10-06 04:20:30,469 - stpipe.Spec2Pipeline.flat_field - INFO - FlatFieldStep instance created. 2022-10-06 04:20:30,470 - stpipe.Spec2Pipeline.srctype - INFO - SourceTypeStep instance created. 2022-10-06 04:20:30,470 - stpipe.Spec2Pipeline.straylight - INFO - StraylightStep instance created. 2022-10-06 04:20:30,471 - stpipe.Spec2Pipeline.fringe - INFO - FringeStep instance created. 2022-10-06 04:20:30,472 - stpipe.Spec2Pipeline.pathloss - INFO - PathLossStep instance created. 2022-10-06 04:20:30,472 - stpipe.Spec2Pipeline.barshadow - INFO - BarShadowStep instance created. 2022-10-06 04:20:30,473 - stpipe.Spec2Pipeline.wfss_contam - INFO - WfssContamStep instance created. 2022-10-06 04:20:30,474 - stpipe.Spec2Pipeline.photom - INFO - PhotomStep instance created. 2022-10-06 04:20:30,475 - stpipe.Spec2Pipeline.resample_spec - INFO - ResampleSpecStep instance created. 2022-10-06 04:20:30,476 - stpipe.Spec2Pipeline.cube_build - INFO - CubeBuildStep instance created. 2022-10-06 04:20:30,477 - stpipe.Spec2Pipeline.extract_1d - INFO - Extract1dStep instance created. 2022-10-06 04:20:30,565 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/jw84600042001_02101_00001_nrs2_rateints.fits',). 2022-10-06 04:20:30,577 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'save_bsub': False, 'fail_on_exception': True, 'save_wfss_esec': False, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000}, 'master_background_mos': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'source_type': None}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0'}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None}, 'wfss_contam': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'save_simulated_image': False, 'save_contam_images': False, 'maximum_cores': 'none'}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'drizzle', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None}}} 2022-10-06 04:20:30,616 - stpipe.Spec2Pipeline - INFO - Prefetching reference files for dataset: 'jw84600042001_02101_00001_nrs2_rateints.fits' reftypes = ['apcorr', 'area', 'barshadow', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'mrsxartcorr', 'msa', 'msaoper', 'ote', 'pathloss', 'photom', 'regions', 'sflat', 'speckernel', 'specprofile', 'spectrace', 'specwcs', 'wavecorr', 'wavelengthrange', 'wavemap', 'wfssbkg'] 2022-10-06 04:20:30,647 - stpipe.Spec2Pipeline - INFO - Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0003.fits'. 2022-10-06 04:20:30,648 - stpipe.Spec2Pipeline - INFO - Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0025.fits'. 2022-10-06 04:20:30,649 - stpipe.Spec2Pipeline - INFO - Prefetch for BARSHADOW reference file is 'N/A'. 2022-10-06 04:20:30,649 - stpipe.Spec2Pipeline - INFO - Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. 2022-10-06 04:20:30,650 - stpipe.Spec2Pipeline - INFO - Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. 2022-10-06 04:20:30,651 - stpipe.Spec2Pipeline - INFO - Prefetch for CUBEPAR reference file is 'N/A'. 2022-10-06 04:20:30,651 - stpipe.Spec2Pipeline - INFO - Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0002.fits'. 2022-10-06 04:20:30,653 - stpipe.Spec2Pipeline - INFO - Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0031.asdf'. 2022-10-06 04:20:30,655 - stpipe.Spec2Pipeline - INFO - Prefetch for DISTORTION reference file is 'N/A'. 2022-10-06 04:20:30,656 - stpipe.Spec2Pipeline - INFO - Prefetch for DRIZPARS reference file is 'N/A'. 2022-10-06 04:20:30,656 - stpipe.Spec2Pipeline - INFO - Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0006.json'. 2022-10-06 04:20:30,657 - stpipe.Spec2Pipeline - INFO - Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0003.fits'. 2022-10-06 04:20:30,658 - stpipe.Spec2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is 'N/A'. 2022-10-06 04:20:30,658 - stpipe.Spec2Pipeline - INFO - Prefetch for FLAT reference file is 'N/A'. 2022-10-06 04:20:30,659 - stpipe.Spec2Pipeline - INFO - Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf'. 2022-10-06 04:20:30,660 - stpipe.Spec2Pipeline - INFO - Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. 2022-10-06 04:20:30,662 - stpipe.Spec2Pipeline - INFO - Prefetch for FRINGE reference file is 'N/A'. 2022-10-06 04:20:30,662 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'. 2022-10-06 04:20:30,662 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'. 2022-10-06 04:20:30,662 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'. 2022-10-06 04:20:30,662 - stpipe.Spec2Pipeline - INFO - Prefetch for MRSXARTCORR reference file is 'N/A'. 2022-10-06 04:20:30,662 - stpipe.Spec2Pipeline - INFO - Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. 2022-10-06 04:20:30,664 - stpipe.Spec2Pipeline - INFO - Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. 2022-10-06 04:20:30,667 - stpipe.Spec2Pipeline - INFO - Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. 2022-10-06 04:20:30,669 - stpipe.Spec2Pipeline - INFO - Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0001.fits'. 2022-10-06 04:20:30,671 - stpipe.Spec2Pipeline - INFO - Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0014.fits'. 2022-10-06 04:20:30,672 - stpipe.Spec2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'. 2022-10-06 04:20:30,673 - stpipe.Spec2Pipeline - INFO - Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0049.fits'. 2022-10-06 04:20:30,674 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECKERNEL reference file is 'N/A'. 2022-10-06 04:20:30,674 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECPROFILE reference file is 'N/A'. 2022-10-06 04:20:30,674 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECTRACE reference file is 'N/A'. 2022-10-06 04:20:30,674 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'. 2022-10-06 04:20:30,674 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0003.asdf'. 2022-10-06 04:20:30,675 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. 2022-10-06 04:20:30,676 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVEMAP reference file is 'N/A'. 2022-10-06 04:20:30,676 - stpipe.Spec2Pipeline - INFO - Prefetch for WFSSBKG reference file is 'N/A'. 2022-10-06 04:20:30,676 - stpipe.Spec2Pipeline - INFO - Starting calwebb_spec2 ... 2022-10-06 04:20:30,677 - stpipe.Spec2Pipeline - INFO - Processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/jw84600042001_02101_00001_nrs2 2022-10-06 04:20:30,677 - stpipe.Spec2Pipeline - INFO - Working on input /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/jw84600042001_02101_00001_nrs2_rateints.fits ... 2022-10-06 04:20:30,804 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<CubeModel(3, 32, 2048) from jw84600042001_02101_00001_nrs2_rateints.fits>,). 2022-10-06 04:20:30,805 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} 2022-10-06 04:20:31,006 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_ytilt is 0.139251918 deg 2022-10-06 04:20:31,006 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.355430037 deg 2022-10-06 04:20:31,006 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_y correction: -0.0019674384812536673 deg 2022-10-06 04:20:31,007 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_x correction: 0.0 deg 2022-10-06 04:20:31,249 - stpipe.Spec2Pipeline.assign_wcs - INFO - Slits projected on detector NRS2: ['S1600A1'] 2022-10-06 04:20:31,250 - stpipe.Spec2Pipeline.assign_wcs - INFO - Computing WCS for 1 open slitlets 2022-10-06 04:20:31,285 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_ytilt is 0.139251918 deg 2022-10-06 04:20:31,285 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.355430037 deg 2022-10-06 04:20:31,285 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_y correction: -0.0019674384812536673 deg 2022-10-06 04:20:31,286 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_x correction: 0.0 deg 2022-10-06 04:20:31,299 - stpipe.Spec2Pipeline.assign_wcs - INFO - SPORDER= -1, wrange=[1.66e-06, 3.17e-06] 2022-10-06 04:20:31,444 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 1 2022-10-06 04:20:31,444 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 2 2022-10-06 04:20:31,444 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 3 2022-10-06 04:20:31,444 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 4 2022-10-06 04:20:31,444 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 1 open slits in quadrant 5 2022-10-06 04:20:31,599 - stpipe.Spec2Pipeline.assign_wcs - INFO - Created a NIRSPEC nrs_brightobj pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0031.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} 2022-10-06 04:20:31,742 - stpipe.Spec2Pipeline.assign_wcs - INFO - COMPLETED assign_wcs 2022-10-06 04:20:32,168 - stpipe.Spec2Pipeline.assign_wcs - INFO - Saved model in jw84600042001_02101_00001_nrs2_assign_wcs.fits 2022-10-06 04:20:32,168 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs done 2022-10-06 04:20:32,267 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract running with args (<CubeModel(3, 32, 2048) from jw84600042001_02101_00001_nrs2_assign_wcs.fits>, []). 2022-10-06 04:20:32,268 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None} 2022-10-06 04:20:32,268 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step skipped. 2022-10-06 04:20:32,271 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract done 2022-10-06 04:20:32,362 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract running with args (<CubeModel(3, 32, 2048) from jw84600042001_02101_00001_nrs2_assign_wcs.fits>, []). 2022-10-06 04:20:32,363 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0'} 2022-10-06 04:20:32,363 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step skipped. 2022-10-06 04:20:32,365 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract done 2022-10-06 04:20:32,454 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging running with args (<CubeModel(3, 32, 2048) from jw84600042001_02101_00001_nrs2_assign_wcs.fits>,). 2022-10-06 04:20:32,454 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0'} 2022-10-06 04:20:32,455 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step skipped. 2022-10-06 04:20:32,457 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging done 2022-10-06 04:20:32,551 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d running with args (<CubeModel(3, 32, 2048) from jw84600042001_02101_00001_nrs2_assign_wcs.fits>,). 2022-10-06 04:20:32,552 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000} 2022-10-06 04:20:32,571 - stpipe.Spec2Pipeline.extract_2d - INFO - EXP_TYPE is NRS_BRIGHTOBJ 2022-10-06 04:20:32,705 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: S1600A1 2022-10-06 04:20:32,705 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 0 2048 2022-10-06 04:20:32,705 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 0 31 2022-10-06 04:20:32,938 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2022-10-06 04:20:32,945 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 6.128994996 -66.598017993 6.128176427 -66.597649726 6.127338445 -66.597948693 6.128156927 -66.598317005 2022-10-06 04:20:32,946 - stpipe.Spec2Pipeline.extract_2d - INFO - extract_2d updated S_REGION to POLYGON ICRS 6.128994996 -66.598017993 6.128176427 -66.597649726 6.127338445 -66.597948693 6.128156927 -66.598317005 2022-10-06 04:20:33,283 - stpipe.Spec2Pipeline.extract_2d - INFO - Saved model in jw84600042001_02101_00001_nrs2_extract_2d.fits 2022-10-06 04:20:33,283 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d done 2022-10-06 04:20:33,417 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype running with args (<SlitModel(3, 31, 2048) from jw84600042001_02101_00001_nrs2_extract_2d.fits>,). 2022-10-06 04:20:33,418 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'source_type': None} 2022-10-06 04:20:33,563 - stpipe.Spec2Pipeline.srctype - INFO - Input EXP_TYPE is NRS_BRIGHTOBJ 2022-10-06 04:20:33,564 - stpipe.Spec2Pipeline.srctype - INFO - Input SRCTYAPT = None 2022-10-06 04:20:33,564 - stpipe.Spec2Pipeline.srctype - WARNING - SRCTYAPT keyword not found in input; using SRCTYPE instead 2022-10-06 04:20:33,564 - stpipe.Spec2Pipeline.srctype - INFO - Input is a TSO exposure; setting SRCTYPE = POINT 2022-10-06 04:20:33,567 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype done 2022-10-06 04:20:33,673 - stpipe.Spec2Pipeline.master_background_mos - INFO - Step master_background_mos running with args (<SlitModel(3, 31, 2048) from jw84600042001_02101_00001_nrs2_extract_2d.fits>,). 2022-10-06 04:20:33,675 - stpipe.Spec2Pipeline.master_background_mos - INFO - Step master_background_mos parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None}}} 2022-10-06 04:20:33,676 - stpipe.Spec2Pipeline.master_background_mos - INFO - Step skipped. 2022-10-06 04:20:33,677 - stpipe.Spec2Pipeline.master_background_mos - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:20:33,677 - stpipe.Spec2Pipeline.master_background_mos - INFO - Step master_background_mos done 2022-10-06 04:20:33,773 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr running with args (<SlitModel(3, 31, 2048) from jw84600042001_02101_00001_nrs2_extract_2d.fits>,). 2022-10-06 04:20:33,774 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0'} 2022-10-06 04:20:34,078 - stpipe.Spec2Pipeline.wavecorr - INFO - Using WAVECORR reference file /grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0003.asdf 2022-10-06 04:20:34,297 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a POINT source type in slit S1600A1 2022-10-06 04:20:34,298 - stpipe.Spec2Pipeline.wavecorr - INFO - slit name S1600A1 2022-10-06 04:20:34,298 - stpipe.Spec2Pipeline.wavecorr - INFO - xoffset, yoffset, 0.0, 0.0 2022-10-06 04:20:34,307 - stpipe.Spec2Pipeline.wavecorr - INFO - Source X/Y position in the slit: -5.332325399340026e-07, -2.0494408111299697e-06 2022-10-06 04:20:34,475 - stpipe.Spec2Pipeline.wavecorr - INFO - Using wavelength zero-point correction for aperture S1600A1 2022-10-06 04:20:34,810 - stpipe.Spec2Pipeline.wavecorr - INFO - Saved model in jw84600042001_02101_00001_nrs2_wavecorr.fits 2022-10-06 04:20:34,810 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr done 2022-10-06 04:20:34,929 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field running with args (<SlitModel(3, 31, 2048) from jw84600042001_02101_00001_nrs2_wavecorr.fits>,). 2022-10-06 04:20:34,930 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2022-10-06 04:20:50,088 - stpipe.Spec2Pipeline.flat_field - INFO - Saved model in jw84600042001_02101_00001_nrs2_flat_field.fits 2022-10-06 04:20:50,088 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field done 2022-10-06 04:20:50,235 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss running with args (<SlitModel(3, 31, 2048) from jw84600042001_02101_00001_nrs2_flat_field.fits>,). 2022-10-06 04:20:50,236 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None} 2022-10-06 04:20:50,236 - stpipe.Spec2Pipeline.pathloss - INFO - Step skipped. 2022-10-06 04:20:50,238 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss done 2022-10-06 04:20:50,358 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow running with args (<SlitModel(3, 31, 2048) from jw84600042001_02101_00001_nrs2_flat_field.fits>,). 2022-10-06 04:20:50,358 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None} 2022-10-06 04:20:50,359 - stpipe.Spec2Pipeline.barshadow - INFO - Step skipped. 2022-10-06 04:20:50,361 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow done 2022-10-06 04:20:50,480 - stpipe.Spec2Pipeline.photom - INFO - Step photom running with args (<SlitModel(3, 31, 2048) from jw84600042001_02101_00001_nrs2_flat_field.fits>,). 2022-10-06 04:20:50,481 - stpipe.Spec2Pipeline.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None} 2022-10-06 04:20:50,937 - stpipe.Spec2Pipeline.photom - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0014.fits 2022-10-06 04:20:50,937 - stpipe.Spec2Pipeline.photom - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0025.fits 2022-10-06 04:20:51,158 - stpipe.Spec2Pipeline.photom - INFO - Using instrument: NIRSPEC 2022-10-06 04:20:51,159 - stpipe.Spec2Pipeline.photom - INFO - detector: NRS2 2022-10-06 04:20:51,159 - stpipe.Spec2Pipeline.photom - INFO - exp_type: NRS_BRIGHTOBJ 2022-10-06 04:20:51,159 - stpipe.Spec2Pipeline.photom - INFO - filter: F170LP 2022-10-06 04:20:51,159 - stpipe.Spec2Pipeline.photom - INFO - grating: G235H 2022-10-06 04:20:51,227 - stpipe.Spec2Pipeline.photom - INFO - Working on slit S1600A1 2022-10-06 04:20:51,227 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 1 2022-10-06 04:20:51,578 - stpipe.Spec2Pipeline.photom - INFO - Saved model in jw84600042001_02101_00001_nrs2_photom.fits 2022-10-06 04:20:51,579 - stpipe.Spec2Pipeline.photom - INFO - Step photom done 2022-10-06 04:20:51,709 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d running with args (<SlitModel(3, 31, 2048) from jw84600042001_02101_00001_nrs2_calints.fits>,). 2022-10-06 04:20:51,710 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1dints', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None} 2022-10-06 04:20:52,018 - stpipe.Spec2Pipeline.extract_1d - INFO - Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0006.json 2022-10-06 04:20:52,172 - stpipe.Spec2Pipeline.extract_1d - INFO - Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0003.fits 2022-10-06 04:20:52,264 - stpipe.Spec2Pipeline.extract_1d - INFO - Processing spectral order -1 2022-10-06 04:20:52,264 - stpipe.Spec2Pipeline.extract_1d - INFO - Beginning loop over 3 integrations ... 2022-10-06 04:20:52,265 - stpipe.Spec2Pipeline.extract_1d - INFO - Extracting integration 1 2022-10-06 04:20:52,267 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: xstart=0, xstop=2047, ystart=12.0, ystop=18.0 2022-10-06 04:20:52,595 - stpipe.Spec2Pipeline.extract_1d - INFO - Applying Aperture correction. 2022-10-06 04:20:55,764 - stpipe.Spec2Pipeline.extract_1d - INFO - Extracting integration 2 2022-10-06 04:20:56,090 - stpipe.Spec2Pipeline.extract_1d - INFO - Applying Aperture correction. 2022-10-06 04:20:59,230 - stpipe.Spec2Pipeline.extract_1d - INFO - Extracting integration 3 2022-10-06 04:20:59,555 - stpipe.Spec2Pipeline.extract_1d - INFO - Applying Aperture correction. 2022-10-06 04:21:02,646 - stpipe.Spec2Pipeline.extract_1d - INFO - All 3 integrations done 2022-10-06 04:21:02,647 - stpipe.Spec2Pipeline.extract_1d - WARNING - INTSTART not found; assuming a value of 1. 2022-10-06 04:21:02,647 - stpipe.Spec2Pipeline.extract_1d - WARNING - INTEND not found; assuming a value of 3. 2022-10-06 04:21:02,647 - stpipe.Spec2Pipeline.extract_1d - WARNING - There is no INT_TIMES table in the input file - Making best guess on integration numbers. 2022-10-06 04:21:02,796 - stpipe.Spec2Pipeline.extract_1d - INFO - Saved model in jw84600042001_02101_00001_nrs2_x1dints.fits 2022-10-06 04:21:02,796 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d done 2022-10-06 04:21:02,796 - stpipe.Spec2Pipeline - INFO - Finished processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/jw84600042001_02101_00001_nrs2 2022-10-06 04:21:02,796 - stpipe.Spec2Pipeline - INFO - Ending calwebb_spec2 2022-10-06 04:21:02,796 - stpipe.Spec2Pipeline - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:21:03,291 - stpipe.Spec2Pipeline - INFO - Saved model in jw84600042001_02101_00001_nrs2_calints.fits 2022-10-06 04:21:03,291 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline done -------------------------------Captured log setup------------------------------- INFO stpipe.Spec2Pipeline:step.py:366 Spec2Pipeline instance created. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:366 BackgroundStep instance created. INFO stpipe.Spec2Pipeline.assign_wcs:step.py:366 AssignWcsStep instance created. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:366 ImprintStep instance created. INFO stpipe.Spec2Pipeline.msa_flagging:step.py:366 MSAFlagOpenStep instance created. INFO stpipe.Spec2Pipeline.extract_2d:step.py:366 Extract2dStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos:step.py:366 MasterBackgroundMosStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:step.py:366 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:step.py:366 PathLossStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:step.py:366 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.photom:step.py:366 PhotomStep instance created. INFO stpipe.Spec2Pipeline.wavecorr:step.py:366 WavecorrStep instance created. INFO stpipe.Spec2Pipeline.flat_field:step.py:366 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.srctype:step.py:366 SourceTypeStep instance created. INFO stpipe.Spec2Pipeline.straylight:step.py:366 StraylightStep instance created. INFO stpipe.Spec2Pipeline.fringe:step.py:366 FringeStep instance created. INFO stpipe.Spec2Pipeline.pathloss:step.py:366 PathLossStep instance created. INFO stpipe.Spec2Pipeline.barshadow:step.py:366 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.wfss_contam:step.py:366 WfssContamStep instance created. INFO stpipe.Spec2Pipeline.photom:step.py:366 PhotomStep instance created. INFO stpipe.Spec2Pipeline.resample_spec:step.py:366 ResampleSpecStep instance created. INFO stpipe.Spec2Pipeline.cube_build:step.py:366 CubeBuildStep instance created. INFO stpipe.Spec2Pipeline.extract_1d:step.py:366 Extract1dStep instance created. INFO stpipe.Spec2Pipeline:step.py:430 Step Spec2Pipeline running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/jw84600042001_02101_00001_nrs2_rateints.fits',). INFO stpipe.Spec2Pipeline:step.py:434 Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'save_bsub': False, 'fail_on_exception': True, 'save_wfss_esec': False, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000}, 'master_background_mos': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'source_type': None}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0'}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None}, 'wfss_contam': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'save_simulated_image': False, 'save_contam_images': False, 'maximum_cores': 'none'}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'drizzle', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None}}} INFO stpipe.Spec2Pipeline:pipeline.py:358 Prefetching reference files for dataset: 'jw84600042001_02101_00001_nrs2_rateints.fits' reftypes = ['apcorr', 'area', 'barshadow', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'mrsxartcorr', 'msa', 'msaoper', 'ote', 'pathloss', 'photom', 'regions', 'sflat', 'speckernel', 'specprofile', 'spectrace', 'specwcs', 'wavecorr', 'wavelengthrange', 'wavemap', 'wfssbkg'] INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0003.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0025.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for BARSHADOW reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for CUBEPAR reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0002.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0031.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DISTORTION reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DRIZPARS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0006.json'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0003.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FILTEROFFSET reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FLAT reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FRINGE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for IFUFORE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for IFUPOST reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for IFUSLICER reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for MRSXARTCORR reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0001.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0014.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for REGIONS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0049.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECKERNEL reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECPROFILE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECTRACE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECWCS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0003.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WAVEMAP reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WFSSBKG reference file is 'N/A'. INFO stpipe.Spec2Pipeline:calwebb_spec2.py:92 Starting calwebb_spec2 ... INFO stpipe.Spec2Pipeline:calwebb_spec2.py:110 Processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/jw84600042001_02101_00001_nrs2 INFO stpipe.Spec2Pipeline:calwebb_spec2.py:176 Working on input /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/jw84600042001_02101_00001_nrs2_rateints.fits ... DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:347 Science data does not allow direct background subtraction. Skipping "bkg_subtract". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:359 Science data does not allow imprint processing. Skipping "imprint_subtraction". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:365 Science data does not allow MSA flagging. Skipping "msa_flagging". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:370 Science data does not allow stray light correction. Skipping "straylight". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:375 Science data does not allow fringe correction. Skipping "fringe". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:381 Science data does not allow pathloss correction. Skipping "pathloss". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:386 Science data does not allow barshadow correction. Skipping "barshadow". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:391 Science data does not allow master background correction. Skipping "master_background_mos". INFO stpipe.Spec2Pipeline.assign_wcs:step.py:430 Step assign_wcs running with args (<CubeModel(3, 32, 2048) from jw84600042001_02101_00001_nrs2_rateints.fits>,). INFO stpipe.Spec2Pipeline.assign_wcs:step.py:434 Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:80 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0031.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:80 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0031.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1375 gwa_ytilt is 0.139251918 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1375 gwa_ytilt is 0.139251918 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1376 gwa_xtilt is 0.355430037 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1376 gwa_xtilt is 0.355430037 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1380 theta_y correction: -0.0019674384812536673 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1380 theta_y correction: -0.0019674384812536673 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:424 Slits projected on detector NRS2: ['S1600A1'] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:424 Slits projected on detector NRS2: ['S1600A1'] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:308 Computing WCS for 1 open slitlets INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:308 Computing WCS for 1 open slitlets INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1375 gwa_ytilt is 0.139251918 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1375 gwa_ytilt is 0.139251918 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1376 gwa_xtilt is 0.355430037 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1376 gwa_xtilt is 0.355430037 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1380 theta_y correction: -0.0019674384812536673 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1380 theta_y correction: -0.0019674384812536673 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:330 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:330 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 1 open slits in quadrant 5 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 1 open slits in quadrant 5 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:62 Created a NIRSPEC nrs_brightobj pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0031.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:62 Created a NIRSPEC nrs_brightobj pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0031.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} INFO stpipe.Spec2Pipeline.assign_wcs:assign_wcs.py:96 COMPLETED assign_wcs INFO stpipe.Spec2Pipeline.assign_wcs:assign_wcs.py:96 COMPLETED assign_wcs INFO stpipe.Spec2Pipeline.assign_wcs:step.py:1016 Saved model in jw84600042001_02101_00001_nrs2_assign_wcs.fits INFO stpipe.Spec2Pipeline.assign_wcs:step.py:546 Step assign_wcs done INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:430 Step bkg_subtract running with args (<CubeModel(3, 32, 2048) from jw84600042001_02101_00001_nrs2_assign_wcs.fits>, []). INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:434 Step bkg_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None} INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:546 Step bkg_subtract done INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:430 Step imprint_subtract running with args (<CubeModel(3, 32, 2048) from jw84600042001_02101_00001_nrs2_assign_wcs.fits>, []). INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:434 Step imprint_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0'} INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:546 Step imprint_subtract done INFO stpipe.Spec2Pipeline.msa_flagging:step.py:430 Step msa_flagging running with args (<CubeModel(3, 32, 2048) from jw84600042001_02101_00001_nrs2_assign_wcs.fits>,). INFO stpipe.Spec2Pipeline.msa_flagging:step.py:434 Step msa_flagging parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0'} INFO stpipe.Spec2Pipeline.msa_flagging:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.msa_flagging:step.py:546 Step msa_flagging done INFO stpipe.Spec2Pipeline.extract_2d:step.py:430 Step extract_2d running with args (<CubeModel(3, 32, 2048) from jw84600042001_02101_00001_nrs2_assign_wcs.fits>,). INFO stpipe.Spec2Pipeline.extract_2d:step.py:434 Step extract_2d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000} INFO stpipe.Spec2Pipeline.extract_2d:extract_2d.py:61 EXP_TYPE is NRS_BRIGHTOBJ INFO stpipe.Spec2Pipeline.extract_2d:extract_2d.py:61 EXP_TYPE is NRS_BRIGHTOBJ INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S1600A1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S1600A1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 0 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 0 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 0 31 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 0 31 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:233 TSO data, so copying the INT_TIMES table. DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:233 TSO data, so copying the INT_TIMES table. DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is CubeModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is CubeModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 6.128994996 -66.598017993 6.128176427 -66.597649726 6.127338445 -66.597948693 6.128156927 -66.598317005 INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 6.128994996 -66.598017993 6.128176427 -66.597649726 6.127338445 -66.597948693 6.128156927 -66.598317005 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:59 extract_2d updated S_REGION to POLYGON ICRS 6.128994996 -66.598017993 6.128176427 -66.597649726 6.127338445 -66.597948693 6.128156927 -66.598317005 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:59 extract_2d updated S_REGION to POLYGON ICRS 6.128994996 -66.598017993 6.128176427 -66.597649726 6.127338445 -66.597948693 6.128156927 -66.598317005 INFO stpipe.Spec2Pipeline.extract_2d:step.py:1016 Saved model in jw84600042001_02101_00001_nrs2_extract_2d.fits INFO stpipe.Spec2Pipeline.extract_2d:step.py:546 Step extract_2d done INFO stpipe.Spec2Pipeline.srctype:step.py:430 Step srctype running with args (<SlitModel(3, 31, 2048) from jw84600042001_02101_00001_nrs2_extract_2d.fits>,). INFO stpipe.Spec2Pipeline.srctype:step.py:434 Step srctype parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'source_type': None} INFO stpipe.Spec2Pipeline.srctype:srctype.py:39 Input EXP_TYPE is NRS_BRIGHTOBJ INFO stpipe.Spec2Pipeline.srctype:srctype.py:39 Input EXP_TYPE is NRS_BRIGHTOBJ INFO stpipe.Spec2Pipeline.srctype:srctype.py:62 Input SRCTYAPT = None INFO stpipe.Spec2Pipeline.srctype:srctype.py:62 Input SRCTYAPT = None WARNING stpipe.Spec2Pipeline.srctype:srctype.py:64 SRCTYAPT keyword not found in input; using SRCTYPE instead WARNING stpipe.Spec2Pipeline.srctype:srctype.py:64 SRCTYAPT keyword not found in input; using SRCTYPE instead INFO stpipe.Spec2Pipeline.srctype:srctype.py:97 Input is a TSO exposure; setting SRCTYPE = POINT INFO stpipe.Spec2Pipeline.srctype:srctype.py:97 Input is a TSO exposure; setting SRCTYPE = POINT INFO stpipe.Spec2Pipeline.srctype:step.py:546 Step srctype done INFO stpipe.Spec2Pipeline.master_background_mos:step.py:430 Step master_background_mos running with args (<SlitModel(3, 31, 2048) from jw84600042001_02101_00001_nrs2_extract_2d.fits>,). INFO stpipe.Spec2Pipeline.master_background_mos:step.py:434 Step master_background_mos parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None}}} INFO stpipe.Spec2Pipeline.master_background_mos:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.master_background_mos:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Spec2Pipeline.master_background_mos:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Spec2Pipeline.master_background_mos:step.py:546 Step master_background_mos done INFO stpipe.Spec2Pipeline.wavecorr:step.py:430 Step wavecorr running with args (<SlitModel(3, 31, 2048) from jw84600042001_02101_00001_nrs2_extract_2d.fits>,). INFO stpipe.Spec2Pipeline.wavecorr:step.py:434 Step wavecorr parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0'} INFO stpipe.Spec2Pipeline.wavecorr:wavecorr_step.py:56 Using WAVECORR reference file /grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0003.asdf INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:244 Detected a POINT source type in slit S1600A1 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:244 Detected a POINT source type in slit S1600A1 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:116 slit name S1600A1 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:116 slit name S1600A1 DEBUG stpipe.Spec2Pipeline.wavecorr:wavecorr.py:281 wcsinfo: 321.531952, -473.679199, 138.771439, -1 DEBUG stpipe.Spec2Pipeline.wavecorr:wavecorr.py:281 wcsinfo: 321.531952, -473.679199, 138.771439, -1 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:284 xoffset, yoffset, 0.0, 0.0 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:284 xoffset, yoffset, 0.0, 0.0 DEBUG stpipe.Spec2Pipeline.wavecorr:wavecorr.py:292 Source X/Y position in V2V3: 321.531952, -473.679199 DEBUG stpipe.Spec2Pipeline.wavecorr:wavecorr.py:292 Source X/Y position in V2V3: 321.531952, -473.679199 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:293 Source X/Y position in the slit: -5.332325399340026e-07, -2.0494408111299697e-06 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:293 Source X/Y position in the slit: -5.332325399340026e-07, -2.0494408111299697e-06 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:170 Using wavelength zero-point correction for aperture S1600A1 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:170 Using wavelength zero-point correction for aperture S1600A1 INFO stpipe.Spec2Pipeline.wavecorr:step.py:1016 Saved model in jw84600042001_02101_00001_nrs2_wavecorr.fits INFO stpipe.Spec2Pipeline.wavecorr:step.py:546 Step wavecorr done INFO stpipe.Spec2Pipeline.flat_field:step.py:430 Step flat_field running with args (<SlitModel(3, 31, 2048) from jw84600042001_02101_00001_nrs2_wavecorr.fits>,). INFO stpipe.Spec2Pipeline.flat_field:step.py:434 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:74 Input is SlitModel of exposure type NRS_BRIGHTOBJ DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:201 No reference found for type FLAT DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:199 Using FFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_fflat_0003.fits DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:199 Using SFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_sflat_0049.fits DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:199 Using DFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_dflat_0002.fits DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1823 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1823 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1830 Number of NaNs in wavelength array = 29406 out of 63488 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1830 Number of NaNs in wavelength array = 29406 out of 63488 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1221 The table wavelength or flat-field data array contained 9257 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1221 The table wavelength or flat-field data array contained 9257 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. INFO stpipe.Spec2Pipeline.flat_field:step.py:1016 Saved model in jw84600042001_02101_00001_nrs2_flat_field.fits INFO stpipe.Spec2Pipeline.flat_field:step.py:546 Step flat_field done INFO stpipe.Spec2Pipeline.pathloss:step.py:430 Step pathloss running with args (<SlitModel(3, 31, 2048) from jw84600042001_02101_00001_nrs2_flat_field.fits>,). INFO stpipe.Spec2Pipeline.pathloss:step.py:434 Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None} INFO stpipe.Spec2Pipeline.pathloss:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.pathloss:step.py:546 Step pathloss done INFO stpipe.Spec2Pipeline.barshadow:step.py:430 Step barshadow running with args (<SlitModel(3, 31, 2048) from jw84600042001_02101_00001_nrs2_flat_field.fits>,). INFO stpipe.Spec2Pipeline.barshadow:step.py:434 Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None} INFO stpipe.Spec2Pipeline.barshadow:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.barshadow:step.py:546 Step barshadow done INFO stpipe.Spec2Pipeline.photom:step.py:430 Step photom running with args (<SlitModel(3, 31, 2048) from jw84600042001_02101_00001_nrs2_flat_field.fits>,). INFO stpipe.Spec2Pipeline.photom:step.py:434 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None} DEBUG stpipe.Spec2Pipeline.photom:photom_step.py:35 Input is SlitModel INFO stpipe.Spec2Pipeline.photom:photom_step.py:55 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0014.fits INFO stpipe.Spec2Pipeline.photom:photom_step.py:56 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0025.fits INFO stpipe.Spec2Pipeline.photom:photom.py:144 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.photom:photom.py:144 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.photom:photom.py:145 detector: NRS2 INFO stpipe.Spec2Pipeline.photom:photom.py:145 detector: NRS2 INFO stpipe.Spec2Pipeline.photom:photom.py:146 exp_type: NRS_BRIGHTOBJ INFO stpipe.Spec2Pipeline.photom:photom.py:146 exp_type: NRS_BRIGHTOBJ INFO stpipe.Spec2Pipeline.photom:photom.py:148 filter: F170LP INFO stpipe.Spec2Pipeline.photom:photom.py:148 filter: F170LP INFO stpipe.Spec2Pipeline.photom:photom.py:152 grating: G235H INFO stpipe.Spec2Pipeline.photom:photom.py:152 grating: G235H INFO stpipe.Spec2Pipeline.photom:photom.py:229 Working on slit S1600A1 INFO stpipe.Spec2Pipeline.photom:photom.py:229 Working on slit S1600A1 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:step.py:1016 Saved model in jw84600042001_02101_00001_nrs2_photom.fits INFO stpipe.Spec2Pipeline.photom:step.py:546 Step photom done INFO stpipe.Spec2Pipeline.extract_1d:step.py:430 Step extract_1d running with args (<SlitModel(3, 31, 2048) from jw84600042001_02101_00001_nrs2_calints.fits>,). INFO stpipe.Spec2Pipeline.extract_1d:step.py:434 Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1dints', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None} DEBUG stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:167 Input is a SlitModel INFO stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:389 Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0006.json INFO stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:397 Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0003.fits INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2917 Processing spectral order -1 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2917 Processing spectral order -1 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3667 Beginning loop over 3 integrations ... INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3667 Beginning loop over 3 integrations ... DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3353 Extracting integration 1 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3353 Extracting integration 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[11.5], [18.5]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[11.5], [18.5]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=2047, ystart=12.0, ystop=18.0 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=2047, ystart=12.0, ystop=18.0 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3770 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3770 Applying Aperture correction. DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3353 Extracting integration 2 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3353 Extracting integration 2 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[11.5], [18.5]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[11.5], [18.5]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3770 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3770 Applying Aperture correction. DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3353 Extracting integration 3 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3353 Extracting integration 3 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[11.5], [18.5]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[11.5], [18.5]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3770 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3770 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3821 All 3 integrations done INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3821 All 3 integrations done DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:3011 Number of output spectra = 3; number of spectra for each integration = 1; number of integrations = 3 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:3011 Number of output spectra = 3; number of spectra for each integration = 1; number of integrations = 3 WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:3017 INTSTART not found; assuming a value of 1. WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:3017 INTSTART not found; assuming a value of 1. WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:3024 INTEND not found; assuming a value of 3. WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:3024 INTEND not found; assuming a value of 3. WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:3040 There is no INT_TIMES table in the input file - Making best guess on integration numbers. WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:3040 There is no INT_TIMES table in the input file - Making best guess on integration numbers. INFO stpipe.Spec2Pipeline.extract_1d:step.py:1016 Saved model in jw84600042001_02101_00001_nrs2_x1dints.fits INFO stpipe.Spec2Pipeline.extract_1d:step.py:546 Step extract_1d done INFO stpipe.Spec2Pipeline:calwebb_spec2.py:314 Finished processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/jw84600042001_02101_00001_nrs2 INFO stpipe.Spec2Pipeline:calwebb_spec2.py:138 Ending calwebb_spec2 INFO stpipe.Spec2Pipeline:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Spec2Pipeline:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Spec2Pipeline:step.py:1016 Saved model in jw84600042001_02101_00001_nrs2_calints.fits INFO stpipe.Spec2Pipeline:step.py:546 Step Spec2Pipeline done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_brightobj.py::test_nirspec_brightobj_spec2[extract_2d] | 0.16 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_brightobj.py::test_nirspec_brightobj_spec2[wavecorr] | 0.29 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_brightobj.py::test_nirspec_brightobj_spec2[flat_field] | 0.30 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_brightobj.py::test_nirspec_brightobj_spec2[photom] | 0.31 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_brightobj.py::test_nirspec_brightobj_spec2[calints] | 0.32 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_brightobj.py::test_nirspec_brightobj_spec2[x1dints] | 0.18 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_brightobj.py::test_flat_field_step_user_supplied_flat | 2.87 | |
|
------------------------------Captured stderr call------------------------------ 2022-10-06 04:21:06,059 - stpipe.FlatFieldStep - INFO - FlatFieldStep instance created. 2022-10-06 04:21:06,201 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp0/nrs2_wavecorr.fits',). 2022-10-06 04:21:06,202 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp0/nrs2_interpolatedflat.fits', 'inverse': False} 2022-10-06 04:21:06,614 - stpipe.FlatFieldStep - INFO - User-supplied flat /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp0/nrs2_interpolatedflat.fits given. Ignoring all flat reference files and flat creation. 2022-10-06 04:21:07,345 - stpipe.FlatFieldStep - INFO - Pre-computed flat <ImageModel(32, 2048) from nrs2_interpolatedflat.fits> provided. Using the flat directly 2022-10-06 04:21:07,357 - stpipe.FlatFieldStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:21:07,357 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep done -------------------------------Captured log call-------------------------------- INFO stpipe.FlatFieldStep:step.py:366 FlatFieldStep instance created. INFO stpipe.FlatFieldStep:step.py:430 Step FlatFieldStep running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp0/nrs2_wavecorr.fits',). INFO stpipe.FlatFieldStep:step.py:434 Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp0/nrs2_interpolatedflat.fits', 'inverse': False} DEBUG stpipe.FlatFieldStep:flat_field_step.py:74 Input is SlitModel of exposure type NRS_BRIGHTOBJ INFO stpipe.FlatFieldStep:flat_field_step.py:96 User-supplied flat /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp0/nrs2_interpolatedflat.fits given. Ignoring all flat reference files and flat creation. DEBUG stpipe.FlatFieldStep:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.FlatFieldStep:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. INFO stpipe.FlatFieldStep:flat_field.py:493 Pre-computed flat <ImageModel(32, 2048) from nrs2_interpolatedflat.fits> provided. Using the flat directly INFO stpipe.FlatFieldStep:flat_field.py:493 Pre-computed flat <ImageModel(32, 2048) from nrs2_interpolatedflat.fits> provided. Using the flat directly INFO stpipe.FlatFieldStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.FlatFieldStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.FlatFieldStep:step.py:546 Step FlatFieldStep done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_brightobj.py::test_flat_field_bots_interp_flat | 13.72 | |
|
------------------------------Captured stderr call------------------------------ 2022-10-06 04:21:08,570 - stpipe.FlatFieldStep - INFO - FlatFieldStep instance created. 2022-10-06 04:21:08,744 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_bots_interp_fl0/jw93056001001_short_nrs1_wavecorr.fits',). 2022-10-06 04:21:08,745 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': True, 'user_supplied_flat': None, 'inverse': False} 2022-10-06 04:21:21,605 - stpipe.FlatFieldStep - INFO - Saved model in jw93056001001_short_nrs1_wavecorr_interpolatedflat.fits 2022-10-06 04:21:21,605 - stpipe.FlatFieldStep - INFO - Interpolated flat written to "jw93056001001_short_nrs1_wavecorr_interpolatedflat.fits". 2022-10-06 04:21:21,611 - stpipe.FlatFieldStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:21:21,611 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep done -------------------------------Captured log call-------------------------------- INFO stpipe.FlatFieldStep:step.py:366 FlatFieldStep instance created. INFO stpipe.FlatFieldStep:step.py:430 Step FlatFieldStep running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_bots_interp_fl0/jw93056001001_short_nrs1_wavecorr.fits',). INFO stpipe.FlatFieldStep:step.py:434 Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': True, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.FlatFieldStep:flat_field_step.py:74 Input is SlitModel of exposure type NRS_BRIGHTOBJ DEBUG stpipe.FlatFieldStep:flat_field_step.py:201 No reference found for type FLAT DEBUG stpipe.FlatFieldStep:flat_field_step.py:199 Using FFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_fflat_0014.fits DEBUG stpipe.FlatFieldStep:flat_field_step.py:199 Using SFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_sflat_0005.fits DEBUG stpipe.FlatFieldStep:flat_field_step.py:199 Using DFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits DEBUG stpipe.FlatFieldStep:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.FlatFieldStep:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.FlatFieldStep:flat_field.py:1823 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1823 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1830 Number of NaNs in wavelength array = 16317 out of 40656 DEBUG stpipe.FlatFieldStep:flat_field.py:1830 Number of NaNs in wavelength array = 16317 out of 40656 DEBUG stpipe.FlatFieldStep:flat_field.py:1221 The table wavelength or flat-field data array contained 13072 NaNs; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:1221 The table wavelength or flat-field data array contained 13072 NaNs; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:1846 1 flat-field values <= 0 DEBUG stpipe.FlatFieldStep:flat_field.py:1846 1 flat-field values <= 0 INFO stpipe.FlatFieldStep:step.py:1016 Saved model in jw93056001001_short_nrs1_wavecorr_interpolatedflat.fits INFO stpipe.FlatFieldStep:flat_field_step.py:140 Interpolated flat written to "jw93056001001_short_nrs1_wavecorr_interpolatedflat.fits". INFO stpipe.FlatFieldStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.FlatFieldStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.FlatFieldStep:step.py:546 Step FlatFieldStep done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_brightobj.py::test_ff_inv | 21.37 | |
|
------------------------------Captured stderr call------------------------------ 2022-10-06 04:21:22,612 - stpipe.FlatFieldStep - INFO - FlatFieldStep instance created. 2022-10-06 04:21:22,746 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep running with args (<SlitModel(3, 32, 2048) from nrs2_wavecorr.fits>,). 2022-10-06 04:21:22,747 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2022-10-06 04:21:32,878 - stpipe.FlatFieldStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:21:32,878 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep done 2022-10-06 04:21:33,037 - stpipe.FlatFieldStep - INFO - FlatFieldStep instance created. 2022-10-06 04:21:33,172 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep running with args (<SlitModel(3, 32, 2048) from nrs2_wavecorr.fits>,). 2022-10-06 04:21:33,173 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': True} 2022-10-06 04:21:43,115 - stpipe.FlatFieldStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:21:43,115 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep done -------------------------------Captured log call-------------------------------- INFO stpipe.FlatFieldStep:step.py:366 FlatFieldStep instance created. INFO stpipe.FlatFieldStep:step.py:430 Step FlatFieldStep running with args (<SlitModel(3, 32, 2048) from nrs2_wavecorr.fits>,). INFO stpipe.FlatFieldStep:step.py:434 Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.FlatFieldStep:flat_field_step.py:74 Input is SlitModel of exposure type NRS_BRIGHTOBJ DEBUG stpipe.FlatFieldStep:flat_field_step.py:201 No reference found for type FLAT DEBUG stpipe.FlatFieldStep:flat_field_step.py:199 Using FFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_fflat_0003.fits DEBUG stpipe.FlatFieldStep:flat_field_step.py:199 Using SFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_sflat_0049.fits DEBUG stpipe.FlatFieldStep:flat_field_step.py:199 Using DFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_dflat_0002.fits DEBUG stpipe.FlatFieldStep:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.FlatFieldStep:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.FlatFieldStep:flat_field.py:1823 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1823 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1830 Number of NaNs in wavelength array = 31454 out of 65536 DEBUG stpipe.FlatFieldStep:flat_field.py:1830 Number of NaNs in wavelength array = 31454 out of 65536 DEBUG stpipe.FlatFieldStep:flat_field.py:1221 The table wavelength or flat-field data array contained 9257 NaNs; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:1221 The table wavelength or flat-field data array contained 9257 NaNs; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. INFO stpipe.FlatFieldStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.FlatFieldStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.FlatFieldStep:step.py:546 Step FlatFieldStep done INFO stpipe.FlatFieldStep:step.py:366 FlatFieldStep instance created. INFO stpipe.FlatFieldStep:step.py:430 Step FlatFieldStep running with args (<SlitModel(3, 32, 2048) from nrs2_wavecorr.fits>,). INFO stpipe.FlatFieldStep:step.py:434 Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': True} DEBUG stpipe.FlatFieldStep:flat_field_step.py:74 Input is SlitModel of exposure type NRS_BRIGHTOBJ DEBUG stpipe.FlatFieldStep:flat_field_step.py:201 No reference found for type FLAT DEBUG stpipe.FlatFieldStep:flat_field_step.py:199 Using FFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_fflat_0003.fits DEBUG stpipe.FlatFieldStep:flat_field_step.py:199 Using SFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_sflat_0049.fits DEBUG stpipe.FlatFieldStep:flat_field_step.py:199 Using DFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_dflat_0002.fits DEBUG stpipe.FlatFieldStep:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.FlatFieldStep:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.FlatFieldStep:flat_field.py:1823 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1823 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1830 Number of NaNs in wavelength array = 31454 out of 65536 DEBUG stpipe.FlatFieldStep:flat_field.py:1830 Number of NaNs in wavelength array = 31454 out of 65536 DEBUG stpipe.FlatFieldStep:flat_field.py:1221 The table wavelength or flat-field data array contained 9257 NaNs; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:1221 The table wavelength or flat-field data array contained 9257 NaNs; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. INFO stpipe.FlatFieldStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.FlatFieldStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.FlatFieldStep:step.py:546 Step FlatFieldStep done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_exceptions.py::test_nirspec_missing_msa_fail | 1.82 | |
|
------------------------------Captured stdout call------------------------------ ---------------------------------------------------------------------- ERROR RUNNING STEP 'Spec2Pipeline': Traceback (most recent call last): File "/internal/data1/jenkins /workspace/Notebooks/jwst_validation_notebooks_spacetelescope/mini conda3/envs/jwst_validation_notebooks/lib/python3.9/site- packages/jwst/assign_wcs/nirspec.py", line 565, in get_open_msa_slits msa_file = fits.open(msa_file, memmap=False) File "/internal/data1/jenkins/workspace/Notebooks/ jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_vali dation_notebooks/lib/python3.9/site- packages/astropy/io/fits/hdu/hdulist.py", line 175, in fitsopen return HDUList.fromfile(name, mode, memmap, save_backup, cache, File "/internal/data1/jenkins/workspace/Notebooks/jwst_validation_ notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks /lib/python3.9/site-packages/astropy/io/fits/hdu/hdulist.py", line 410, in fromfile return cls._readfrom(fileobj=fileobj, mode=mode, memmap=memmap, File "/internal/data1/jenkins/workspac e/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/en vs/jwst_validation_notebooks/lib/python3.9/site- packages/astropy/io/fits/hdu/hdulist.py", line 1060, in _readfrom fileobj = _File(fileobj, mode=mode, memmap=memmap, cache=cache) File "/internal/data1/jenkins/workspace/Notebooks/jwst_validation_ notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks /lib/python3.9/site-packages/astropy/io/fits/file.py", line 170, in __init__ self._open_filename(fileobj, mode, overwrite) File "/internal/data1/jenkins/workspace/Notebooks/jwst_validation_ notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks /lib/python3.9/site-packages/astropy/io/fits/file.py", line 562, in _open_filename self._file = open(self.name, IO_FITS_MODES[mode]) FileNotFoundError: [Errno 2] No such file or directory: '/internal/data1/jenkins/workspace/Notebooks/jwst_valid ation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_ni rspec_missing_msa_fail0/jw95065006001_0_short_msa.fits' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/internal/data1/jenkins /workspace/Notebooks/jwst_validation_notebooks_spacetelescope/mini conda3/envs/jwst_validation_notebooks/lib/python3.9/site- packages/jwst/pipeline/calwebb_spec2.py", line 117, in process result = self.process_exposure_product( File "/internal/data1/je nkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope /miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site- packages/jwst/pipeline/calwebb_spec2.py", line 233, in process_exposure_product raise assign_wcs_exception File "/i nternal/data1/jenkins/workspace/Notebooks/jwst_validation_notebook s_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/pyt hon3.9/site-packages/jwst/pipeline/calwebb_spec2.py", line 217, in process_exposure_product calibrated = self.assign_wcs(science) File "/internal/data1/jenkins/workspace/Notebooks/jwst_validation_ notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks /lib/python3.9/site-packages/stpipe/step.py", line 483, in run step_result = self.process(*args) File "/internal/data1/jenkins/ workspace/Notebooks/jwst_validation_notebooks_spacetelescope/minic onda3/envs/jwst_validation_notebooks/lib/python3.9/site- packages/jwst/assign_wcs/assign_wcs_step.py", line 93, in process result = load_wcs(input_model, reference_file_names, slit_y_range) File "/internal/data1/jenkins/workspace/Notebooks/jwst_validation_ notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks /lib/python3.9/site-packages/jwst/assign_wcs/assign_wcs.py", line 53, in load_wcs pipeline = mod.create_pipeline(input_model, reference_files, slit_y_range=nrs_slit_y_range) File "/internal/ data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacet elescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/s ite-packages/jwst/assign_wcs/nirspec.py", line 60, in create_pipeline pipeline = exp_type2transform[exp_type](input_model, reference_files, slit_y_range=slit_y_range) File "/internal/data1/jenkins/workspa ce/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/e nvs/jwst_validation_notebooks/lib/python3.9/site- packages/jwst/assign_wcs/nirspec.py", line 304, in slits_wcs open_slits_id = get_open_slits(input_model, reference_files, slit_y_range) File "/internal/data1/jenkins/workspace/Notebooks/ jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_vali dation_notebooks/lib/python3.9/site- packages/jwst/assign_wcs/nirspec.py", line 412, in get_open_slits slits = get_open_msa_slits(msa_metadata_file, msa_metadata_id, dither_point, slit_y_range) File "/internal/data1/jenkins/worksp ace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/ envs/jwst_validation_notebooks/lib/python3.9/site- packages/jwst/assign_wcs/nirspec.py", line 569, in get_open_msa_slits raise MSAFileError(message) jwst.assign_wcs.util.MSAFileError: Missing MSA meta (MSAMETFL) file /internal/data1/jenkins/workspace/Notebooks/jwst_validation_n otebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_m issing_msa_fail0/jw95065006001_0_short_msa.fits ---------------------------------------------------------------------- ------------------------------Captured stderr call------------------------------ 2022-10-06 04:21:44,322 - stpipe.Spec2Pipeline - INFO - Spec2Pipeline instance created. 2022-10-06 04:21:44,323 - stpipe.Spec2Pipeline.bkg_subtract - INFO - BackgroundStep instance created. 2022-10-06 04:21:44,324 - stpipe.Spec2Pipeline.assign_wcs - INFO - AssignWcsStep instance created. 2022-10-06 04:21:44,325 - stpipe.Spec2Pipeline.imprint_subtract - INFO - ImprintStep instance created. 2022-10-06 04:21:44,326 - stpipe.Spec2Pipeline.msa_flagging - INFO - MSAFlagOpenStep instance created. 2022-10-06 04:21:44,327 - stpipe.Spec2Pipeline.extract_2d - INFO - Extract2dStep instance created. 2022-10-06 04:21:44,329 - stpipe.Spec2Pipeline.master_background_mos - INFO - MasterBackgroundMosStep instance created. 2022-10-06 04:21:44,330 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - FlatFieldStep instance created. 2022-10-06 04:21:44,330 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - PathLossStep instance created. 2022-10-06 04:21:44,331 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - BarShadowStep instance created. 2022-10-06 04:21:44,332 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - PhotomStep instance created. 2022-10-06 04:21:44,333 - stpipe.Spec2Pipeline.wavecorr - INFO - WavecorrStep instance created. 2022-10-06 04:21:44,333 - stpipe.Spec2Pipeline.flat_field - INFO - FlatFieldStep instance created. 2022-10-06 04:21:44,334 - stpipe.Spec2Pipeline.srctype - INFO - SourceTypeStep instance created. 2022-10-06 04:21:44,335 - stpipe.Spec2Pipeline.straylight - INFO - StraylightStep instance created. 2022-10-06 04:21:44,335 - stpipe.Spec2Pipeline.fringe - INFO - FringeStep instance created. 2022-10-06 04:21:44,336 - stpipe.Spec2Pipeline.pathloss - INFO - PathLossStep instance created. 2022-10-06 04:21:44,337 - stpipe.Spec2Pipeline.barshadow - INFO - BarShadowStep instance created. 2022-10-06 04:21:44,337 - stpipe.Spec2Pipeline.wfss_contam - INFO - WfssContamStep instance created. 2022-10-06 04:21:44,338 - stpipe.Spec2Pipeline.photom - INFO - PhotomStep instance created. 2022-10-06 04:21:44,339 - stpipe.Spec2Pipeline.resample_spec - INFO - ResampleSpecStep instance created. 2022-10-06 04:21:44,340 - stpipe.Spec2Pipeline.cube_build - INFO - CubeBuildStep instance created. 2022-10-06 04:21:44,341 - stpipe.Spec2Pipeline.extract_1d - INFO - Extract1dStep instance created. 2022-10-06 04:21:44,462 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits',). 2022-10-06 04:21:44,474 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'save_bsub': False, 'fail_on_exception': True, 'save_wfss_esec': False, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000}, 'master_background_mos': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'source_type': None}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0'}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'inverse': False, 'source_type': None}, 'wfss_contam': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'save_simulated_image': False, 'save_contam_images': False, 'maximum_cores': 'none'}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'drizzle', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None}}} 2022-10-06 04:21:44,515 - stpipe.Spec2Pipeline - INFO - Prefetching reference files for dataset: 'f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits' reftypes = ['apcorr', 'area', 'barshadow', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'mrsxartcorr', 'msa', 'msaoper', 'ote', 'pathloss', 'photom', 'regions', 'sflat', 'speckernel', 'specprofile', 'spectrace', 'specwcs', 'wavecorr', 'wavelengthrange', 'wavemap', 'wfssbkg'] 2022-10-06 04:21:44,588 - stpipe.Spec2Pipeline - INFO - Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits'. 2022-10-06 04:21:44,594 - stpipe.Spec2Pipeline - INFO - Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits'. 2022-10-06 04:21:44,596 - stpipe.Spec2Pipeline - INFO - Prefetch for BARSHADOW reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits'. 2022-10-06 04:21:44,598 - stpipe.Spec2Pipeline - INFO - Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. 2022-10-06 04:21:44,601 - stpipe.Spec2Pipeline - INFO - Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. 2022-10-06 04:21:44,602 - stpipe.Spec2Pipeline - INFO - Prefetch for CUBEPAR reference file is 'N/A'. 2022-10-06 04:21:44,602 - stpipe.Spec2Pipeline - INFO - Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits'. 2022-10-06 04:21:44,603 - stpipe.Spec2Pipeline - INFO - Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf'. 2022-10-06 04:21:44,607 - stpipe.Spec2Pipeline - INFO - Prefetch for DISTORTION reference file is 'N/A'. 2022-10-06 04:21:44,607 - stpipe.Spec2Pipeline - INFO - Prefetch for DRIZPARS reference file is 'N/A'. 2022-10-06 04:21:44,607 - stpipe.Spec2Pipeline - INFO - Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json'. 2022-10-06 04:21:44,610 - stpipe.Spec2Pipeline - INFO - Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits'. 2022-10-06 04:21:44,614 - stpipe.Spec2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is 'N/A'. 2022-10-06 04:21:44,614 - stpipe.Spec2Pipeline - INFO - Prefetch for FLAT reference file is 'N/A'. 2022-10-06 04:21:44,614 - stpipe.Spec2Pipeline - INFO - Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf'. 2022-10-06 04:21:44,615 - stpipe.Spec2Pipeline - INFO - Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. 2022-10-06 04:21:44,619 - stpipe.Spec2Pipeline - INFO - Prefetch for FRINGE reference file is 'N/A'. 2022-10-06 04:21:44,619 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'. 2022-10-06 04:21:44,619 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'. 2022-10-06 04:21:44,619 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'. 2022-10-06 04:21:44,619 - stpipe.Spec2Pipeline - INFO - Prefetch for MRSXARTCORR reference file is 'N/A'. 2022-10-06 04:21:44,619 - stpipe.Spec2Pipeline - INFO - Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. 2022-10-06 04:21:44,621 - stpipe.Spec2Pipeline - INFO - Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. 2022-10-06 04:21:44,622 - stpipe.Spec2Pipeline - INFO - Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. 2022-10-06 04:21:44,624 - stpipe.Spec2Pipeline - INFO - Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits'. 2022-10-06 04:21:44,626 - stpipe.Spec2Pipeline - INFO - Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits'. 2022-10-06 04:21:44,630 - stpipe.Spec2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'. 2022-10-06 04:21:44,630 - stpipe.Spec2Pipeline - INFO - Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits'. 2022-10-06 04:21:44,632 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECKERNEL reference file is 'N/A'. 2022-10-06 04:21:44,632 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECPROFILE reference file is 'N/A'. 2022-10-06 04:21:44,632 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECTRACE reference file is 'N/A'. 2022-10-06 04:21:44,632 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'. 2022-10-06 04:21:44,632 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0004.asdf'. 2022-10-06 04:21:44,635 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf'. 2022-10-06 04:21:44,636 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVEMAP reference file is 'N/A'. 2022-10-06 04:21:44,637 - stpipe.Spec2Pipeline - INFO - Prefetch for WFSSBKG reference file is 'N/A'. 2022-10-06 04:21:44,637 - stpipe.Spec2Pipeline - INFO - Starting calwebb_spec2 ... 2022-10-06 04:21:44,637 - stpipe.Spec2Pipeline - INFO - Processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod 2022-10-06 04:21:44,637 - stpipe.Spec2Pipeline - INFO - Working on input /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits ... 2022-10-06 04:21:44,795 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(2048, 2048) from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits>,). 2022-10-06 04:21:44,796 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} 2022-10-06 04:21:44,945 - stpipe.Spec2Pipeline.assign_wcs - ERROR - Missing MSA meta (MSAMETFL) file /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0/jw95065006001_0_short_msa.fits 2022-10-06 04:21:44,945 - stpipe.Spec2Pipeline - ERROR - Assign_wcs processing was skipped. 2022-10-06 04:21:44,945 - stpipe.Spec2Pipeline - ERROR - Aborting remaining processing for this exposure. 2022-10-06 04:21:44,945 - stpipe.Spec2Pipeline - ERROR - No output product will be created. Traceback (most recent call last): File "/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/assign_wcs/nirspec.py", line 565, in get_open_msa_slits msa_file = fits.open(msa_file, memmap=False) File "/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/io/fits/hdu/hdulist.py", line 175, in fitsopen return HDUList.fromfile(name, mode, memmap, save_backup, cache, File "/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/io/fits/hdu/hdulist.py", line 410, in fromfile return cls._readfrom(fileobj=fileobj, mode=mode, memmap=memmap, File "/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/io/fits/hdu/hdulist.py", line 1060, in _readfrom fileobj = _File(fileobj, mode=mode, memmap=memmap, cache=cache) File "/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/io/fits/file.py", line 170, in __init__ self._open_filename(fileobj, mode, overwrite) File "/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/io/fits/file.py", line 562, in _open_filename self._file = open(self.name, IO_FITS_MODES[mode]) FileNotFoundError: [Errno 2] No such file or directory: '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0/jw95065006001_0_short_msa.fits' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/pipeline/calwebb_spec2.py", line 117, in process result = self.process_exposure_product( File "/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/pipeline/calwebb_spec2.py", line 233, in process_exposure_product raise assign_wcs_exception File "/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/pipeline/calwebb_spec2.py", line 217, in process_exposure_product calibrated = self.assign_wcs(science) File "/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/stpipe/step.py", line 483, in run step_result = self.process(*args) File "/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/assign_wcs/assign_wcs_step.py", line 93, in process result = load_wcs(input_model, reference_file_names, slit_y_range) File "/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/assign_wcs/assign_wcs.py", line 53, in load_wcs pipeline = mod.create_pipeline(input_model, reference_files, slit_y_range=nrs_slit_y_range) File "/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/assign_wcs/nirspec.py", line 60, in create_pipeline pipeline = exp_type2transform[exp_type](input_model, reference_files, slit_y_range=slit_y_range) File "/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/assign_wcs/nirspec.py", line 304, in slits_wcs open_slits_id = get_open_slits(input_model, reference_files, slit_y_range) File "/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/assign_wcs/nirspec.py", line 412, in get_open_slits slits = get_open_msa_slits(msa_metadata_file, msa_metadata_id, dither_point, slit_y_range) File "/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/assign_wcs/nirspec.py", line 569, in get_open_msa_slits raise MSAFileError(message) jwst.assign_wcs.util.MSAFileError: Missing MSA meta (MSAMETFL) file /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0/jw95065006001_0_short_msa.fits -------------------------------Captured log call-------------------------------- INFO stpipe.Spec2Pipeline:step.py:366 Spec2Pipeline instance created. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:366 BackgroundStep instance created. INFO stpipe.Spec2Pipeline.assign_wcs:step.py:366 AssignWcsStep instance created. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:366 ImprintStep instance created. INFO stpipe.Spec2Pipeline.msa_flagging:step.py:366 MSAFlagOpenStep instance created. INFO stpipe.Spec2Pipeline.extract_2d:step.py:366 Extract2dStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos:step.py:366 MasterBackgroundMosStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:step.py:366 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:step.py:366 PathLossStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:step.py:366 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.photom:step.py:366 PhotomStep instance created. INFO stpipe.Spec2Pipeline.wavecorr:step.py:366 WavecorrStep instance created. INFO stpipe.Spec2Pipeline.flat_field:step.py:366 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.srctype:step.py:366 SourceTypeStep instance created. INFO stpipe.Spec2Pipeline.straylight:step.py:366 StraylightStep instance created. INFO stpipe.Spec2Pipeline.fringe:step.py:366 FringeStep instance created. INFO stpipe.Spec2Pipeline.pathloss:step.py:366 PathLossStep instance created. INFO stpipe.Spec2Pipeline.barshadow:step.py:366 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.wfss_contam:step.py:366 WfssContamStep instance created. INFO stpipe.Spec2Pipeline.photom:step.py:366 PhotomStep instance created. INFO stpipe.Spec2Pipeline.resample_spec:step.py:366 ResampleSpecStep instance created. INFO stpipe.Spec2Pipeline.cube_build:step.py:366 CubeBuildStep instance created. INFO stpipe.Spec2Pipeline.extract_1d:step.py:366 Extract1dStep instance created. INFO stpipe.Spec2Pipeline:step.py:430 Step Spec2Pipeline running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits',). INFO stpipe.Spec2Pipeline:step.py:434 Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'save_bsub': False, 'fail_on_exception': True, 'save_wfss_esec': False, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000}, 'master_background_mos': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'source_type': None}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0'}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'inverse': False, 'source_type': None}, 'wfss_contam': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'save_simulated_image': False, 'save_contam_images': False, 'maximum_cores': 'none'}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'drizzle', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None}}} INFO stpipe.Spec2Pipeline:pipeline.py:358 Prefetching reference files for dataset: 'f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits' reftypes = ['apcorr', 'area', 'barshadow', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'mrsxartcorr', 'msa', 'msaoper', 'ote', 'pathloss', 'photom', 'regions', 'sflat', 'speckernel', 'specprofile', 'spectrace', 'specwcs', 'wavecorr', 'wavelengthrange', 'wavemap', 'wfssbkg'] INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for BARSHADOW reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for CUBEPAR reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DISTORTION reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DRIZPARS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FILTEROFFSET reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FLAT reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FRINGE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for IFUFORE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for IFUPOST reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for IFUSLICER reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for MRSXARTCORR reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for REGIONS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECKERNEL reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECPROFILE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECTRACE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECWCS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WAVEMAP reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WFSSBKG reference file is 'N/A'. INFO stpipe.Spec2Pipeline:calwebb_spec2.py:92 Starting calwebb_spec2 ... INFO stpipe.Spec2Pipeline:calwebb_spec2.py:110 Processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod INFO stpipe.Spec2Pipeline:calwebb_spec2.py:176 Working on input /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits ... DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:347 Science data does not allow direct background subtraction. Skipping "bkg_subtract". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:359 Science data does not allow imprint processing. Skipping "imprint_subtraction". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:370 Science data does not allow stray light correction. Skipping "straylight". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:375 Science data does not allow fringe correction. Skipping "fringe". INFO stpipe.Spec2Pipeline.assign_wcs:step.py:430 Step assign_wcs running with args (<ImageModel(2048, 2048) from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits>,). INFO stpipe.Spec2Pipeline.assign_wcs:step.py:434 Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:80 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:80 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} ERROR stpipe.Spec2Pipeline.assign_wcs:nirspec.py:568 Missing MSA meta (MSAMETFL) file /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0/jw95065006001_0_short_msa.fits ERROR stpipe.Spec2Pipeline.assign_wcs:nirspec.py:568 Missing MSA meta (MSAMETFL) file /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0/jw95065006001_0_short_msa.fits ERROR stpipe.Spec2Pipeline:calwebb_spec2.py:231 Assign_wcs processing was skipped. ERROR stpipe.Spec2Pipeline:calwebb_spec2.py:231 Aborting remaining processing for this exposure. ERROR stpipe.Spec2Pipeline:calwebb_spec2.py:231 No output product will be created. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_exceptions.py::test_nirspec_missing_msa_nofail | 1.25 | |
|
------------------------------Captured stderr call------------------------------ 2022-10-06 04:21:45,686 - stpipe.Spec2Pipeline - INFO - Spec2Pipeline instance created. 2022-10-06 04:21:45,687 - stpipe.Spec2Pipeline.bkg_subtract - INFO - BackgroundStep instance created. 2022-10-06 04:21:45,688 - stpipe.Spec2Pipeline.assign_wcs - INFO - AssignWcsStep instance created. 2022-10-06 04:21:45,688 - stpipe.Spec2Pipeline.imprint_subtract - INFO - ImprintStep instance created. 2022-10-06 04:21:45,689 - stpipe.Spec2Pipeline.msa_flagging - INFO - MSAFlagOpenStep instance created. 2022-10-06 04:21:45,690 - stpipe.Spec2Pipeline.extract_2d - INFO - Extract2dStep instance created. 2022-10-06 04:21:45,692 - stpipe.Spec2Pipeline.master_background_mos - INFO - MasterBackgroundMosStep instance created. 2022-10-06 04:21:45,693 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - FlatFieldStep instance created. 2022-10-06 04:21:45,694 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - PathLossStep instance created. 2022-10-06 04:21:45,694 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - BarShadowStep instance created. 2022-10-06 04:21:45,695 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - PhotomStep instance created. 2022-10-06 04:21:45,696 - stpipe.Spec2Pipeline.wavecorr - INFO - WavecorrStep instance created. 2022-10-06 04:21:45,696 - stpipe.Spec2Pipeline.flat_field - INFO - FlatFieldStep instance created. 2022-10-06 04:21:45,697 - stpipe.Spec2Pipeline.srctype - INFO - SourceTypeStep instance created. 2022-10-06 04:21:45,698 - stpipe.Spec2Pipeline.straylight - INFO - StraylightStep instance created. 2022-10-06 04:21:45,698 - stpipe.Spec2Pipeline.fringe - INFO - FringeStep instance created. 2022-10-06 04:21:45,699 - stpipe.Spec2Pipeline.pathloss - INFO - PathLossStep instance created. 2022-10-06 04:21:45,700 - stpipe.Spec2Pipeline.barshadow - INFO - BarShadowStep instance created. 2022-10-06 04:21:45,701 - stpipe.Spec2Pipeline.wfss_contam - INFO - WfssContamStep instance created. 2022-10-06 04:21:45,701 - stpipe.Spec2Pipeline.photom - INFO - PhotomStep instance created. 2022-10-06 04:21:45,702 - stpipe.Spec2Pipeline.resample_spec - INFO - ResampleSpecStep instance created. 2022-10-06 04:21:45,703 - stpipe.Spec2Pipeline.cube_build - INFO - CubeBuildStep instance created. 2022-10-06 04:21:45,705 - stpipe.Spec2Pipeline.extract_1d - INFO - Extract1dStep instance created. 2022-10-06 04:21:45,832 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits',). 2022-10-06 04:21:45,844 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'save_bsub': False, 'fail_on_exception': False, 'save_wfss_esec': False, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000}, 'master_background_mos': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'source_type': None}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0'}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'inverse': False, 'source_type': None}, 'wfss_contam': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'save_simulated_image': False, 'save_contam_images': False, 'maximum_cores': 'none'}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'drizzle', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None}}} 2022-10-06 04:21:45,885 - stpipe.Spec2Pipeline - INFO - Prefetching reference files for dataset: 'f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits' reftypes = ['apcorr', 'area', 'barshadow', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'mrsxartcorr', 'msa', 'msaoper', 'ote', 'pathloss', 'photom', 'regions', 'sflat', 'speckernel', 'specprofile', 'spectrace', 'specwcs', 'wavecorr', 'wavelengthrange', 'wavemap', 'wfssbkg'] 2022-10-06 04:21:45,891 - stpipe.Spec2Pipeline - INFO - Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits'. 2022-10-06 04:21:45,891 - stpipe.Spec2Pipeline - INFO - Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits'. 2022-10-06 04:21:45,892 - stpipe.Spec2Pipeline - INFO - Prefetch for BARSHADOW reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits'. 2022-10-06 04:21:45,892 - stpipe.Spec2Pipeline - INFO - Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. 2022-10-06 04:21:45,893 - stpipe.Spec2Pipeline - INFO - Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. 2022-10-06 04:21:45,893 - stpipe.Spec2Pipeline - INFO - Prefetch for CUBEPAR reference file is 'N/A'. 2022-10-06 04:21:45,893 - stpipe.Spec2Pipeline - INFO - Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits'. 2022-10-06 04:21:45,894 - stpipe.Spec2Pipeline - INFO - Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf'. 2022-10-06 04:21:45,894 - stpipe.Spec2Pipeline - INFO - Prefetch for DISTORTION reference file is 'N/A'. 2022-10-06 04:21:45,894 - stpipe.Spec2Pipeline - INFO - Prefetch for DRIZPARS reference file is 'N/A'. 2022-10-06 04:21:45,894 - stpipe.Spec2Pipeline - INFO - Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json'. 2022-10-06 04:21:45,895 - stpipe.Spec2Pipeline - INFO - Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits'. 2022-10-06 04:21:45,895 - stpipe.Spec2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is 'N/A'. 2022-10-06 04:21:45,896 - stpipe.Spec2Pipeline - INFO - Prefetch for FLAT reference file is 'N/A'. 2022-10-06 04:21:45,896 - stpipe.Spec2Pipeline - INFO - Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf'. 2022-10-06 04:21:45,896 - stpipe.Spec2Pipeline - INFO - Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. 2022-10-06 04:21:45,897 - stpipe.Spec2Pipeline - INFO - Prefetch for FRINGE reference file is 'N/A'. 2022-10-06 04:21:45,897 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'. 2022-10-06 04:21:45,897 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'. 2022-10-06 04:21:45,897 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'. 2022-10-06 04:21:45,897 - stpipe.Spec2Pipeline - INFO - Prefetch for MRSXARTCORR reference file is 'N/A'. 2022-10-06 04:21:45,897 - stpipe.Spec2Pipeline - INFO - Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. 2022-10-06 04:21:45,897 - stpipe.Spec2Pipeline - INFO - Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. 2022-10-06 04:21:45,898 - stpipe.Spec2Pipeline - INFO - Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. 2022-10-06 04:21:45,898 - stpipe.Spec2Pipeline - INFO - Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits'. 2022-10-06 04:21:45,899 - stpipe.Spec2Pipeline - INFO - Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits'. 2022-10-06 04:21:45,899 - stpipe.Spec2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'. 2022-10-06 04:21:45,899 - stpipe.Spec2Pipeline - INFO - Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits'. 2022-10-06 04:21:45,900 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECKERNEL reference file is 'N/A'. 2022-10-06 04:21:45,900 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECPROFILE reference file is 'N/A'. 2022-10-06 04:21:45,900 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECTRACE reference file is 'N/A'. 2022-10-06 04:21:45,900 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'. 2022-10-06 04:21:45,900 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0004.asdf'. 2022-10-06 04:21:45,900 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf'. 2022-10-06 04:21:45,901 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVEMAP reference file is 'N/A'. 2022-10-06 04:21:45,901 - stpipe.Spec2Pipeline - INFO - Prefetch for WFSSBKG reference file is 'N/A'. 2022-10-06 04:21:45,901 - stpipe.Spec2Pipeline - INFO - Starting calwebb_spec2 ... 2022-10-06 04:21:45,901 - stpipe.Spec2Pipeline - INFO - Processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod 2022-10-06 04:21:45,901 - stpipe.Spec2Pipeline - INFO - Working on input /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits ... 2022-10-06 04:21:46,059 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(2048, 2048) from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits>,). 2022-10-06 04:21:46,060 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} 2022-10-06 04:21:46,198 - stpipe.Spec2Pipeline.assign_wcs - ERROR - Missing MSA meta (MSAMETFL) file /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0/jw95065006001_0_short_msa.fits 2022-10-06 04:21:46,198 - stpipe.Spec2Pipeline - ERROR - Assign_wcs processing was skipped. 2022-10-06 04:21:46,198 - stpipe.Spec2Pipeline - ERROR - Aborting remaining processing for this exposure. 2022-10-06 04:21:46,199 - stpipe.Spec2Pipeline - ERROR - No output product will be created. Traceback (most recent call last): File "/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/assign_wcs/nirspec.py", line 565, in get_open_msa_slits msa_file = fits.open(msa_file, memmap=False) File "/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/io/fits/hdu/hdulist.py", line 175, in fitsopen return HDUList.fromfile(name, mode, memmap, save_backup, cache, File "/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/io/fits/hdu/hdulist.py", line 410, in fromfile return cls._readfrom(fileobj=fileobj, mode=mode, memmap=memmap, File "/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/io/fits/hdu/hdulist.py", line 1060, in _readfrom fileobj = _File(fileobj, mode=mode, memmap=memmap, cache=cache) File "/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/io/fits/file.py", line 170, in __init__ self._open_filename(fileobj, mode, overwrite) File "/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/io/fits/file.py", line 562, in _open_filename self._file = open(self.name, IO_FITS_MODES[mode]) FileNotFoundError: [Errno 2] No such file or directory: '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0/jw95065006001_0_short_msa.fits' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/pipeline/calwebb_spec2.py", line 117, in process result = self.process_exposure_product( File "/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/pipeline/calwebb_spec2.py", line 233, in process_exposure_product raise assign_wcs_exception File "/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/pipeline/calwebb_spec2.py", line 217, in process_exposure_product calibrated = self.assign_wcs(science) File "/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/stpipe/step.py", line 483, in run step_result = self.process(*args) File "/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/assign_wcs/assign_wcs_step.py", line 93, in process result = load_wcs(input_model, reference_file_names, slit_y_range) File "/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/assign_wcs/assign_wcs.py", line 53, in load_wcs pipeline = mod.create_pipeline(input_model, reference_files, slit_y_range=nrs_slit_y_range) File "/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/assign_wcs/nirspec.py", line 60, in create_pipeline pipeline = exp_type2transform[exp_type](input_model, reference_files, slit_y_range=slit_y_range) File "/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/assign_wcs/nirspec.py", line 304, in slits_wcs open_slits_id = get_open_slits(input_model, reference_files, slit_y_range) File "/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/assign_wcs/nirspec.py", line 412, in get_open_slits slits = get_open_msa_slits(msa_metadata_file, msa_metadata_id, dither_point, slit_y_range) File "/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/assign_wcs/nirspec.py", line 569, in get_open_msa_slits raise MSAFileError(message) jwst.assign_wcs.util.MSAFileError: Missing MSA meta (MSAMETFL) file /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0/jw95065006001_0_short_msa.fits 2022-10-06 04:21:46,199 - stpipe.Spec2Pipeline - INFO - Ending calwebb_spec2 2022-10-06 04:21:46,199 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline done -------------------------------Captured log call-------------------------------- INFO stpipe.Spec2Pipeline:step.py:366 Spec2Pipeline instance created. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:366 BackgroundStep instance created. INFO stpipe.Spec2Pipeline.assign_wcs:step.py:366 AssignWcsStep instance created. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:366 ImprintStep instance created. INFO stpipe.Spec2Pipeline.msa_flagging:step.py:366 MSAFlagOpenStep instance created. INFO stpipe.Spec2Pipeline.extract_2d:step.py:366 Extract2dStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos:step.py:366 MasterBackgroundMosStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:step.py:366 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:step.py:366 PathLossStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:step.py:366 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.photom:step.py:366 PhotomStep instance created. INFO stpipe.Spec2Pipeline.wavecorr:step.py:366 WavecorrStep instance created. INFO stpipe.Spec2Pipeline.flat_field:step.py:366 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.srctype:step.py:366 SourceTypeStep instance created. INFO stpipe.Spec2Pipeline.straylight:step.py:366 StraylightStep instance created. INFO stpipe.Spec2Pipeline.fringe:step.py:366 FringeStep instance created. INFO stpipe.Spec2Pipeline.pathloss:step.py:366 PathLossStep instance created. INFO stpipe.Spec2Pipeline.barshadow:step.py:366 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.wfss_contam:step.py:366 WfssContamStep instance created. INFO stpipe.Spec2Pipeline.photom:step.py:366 PhotomStep instance created. INFO stpipe.Spec2Pipeline.resample_spec:step.py:366 ResampleSpecStep instance created. INFO stpipe.Spec2Pipeline.cube_build:step.py:366 CubeBuildStep instance created. INFO stpipe.Spec2Pipeline.extract_1d:step.py:366 Extract1dStep instance created. INFO stpipe.Spec2Pipeline:step.py:430 Step Spec2Pipeline running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits',). INFO stpipe.Spec2Pipeline:step.py:434 Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'save_bsub': False, 'fail_on_exception': False, 'save_wfss_esec': False, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000}, 'master_background_mos': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'source_type': None}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0'}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'inverse': False, 'source_type': None}, 'wfss_contam': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'save_simulated_image': False, 'save_contam_images': False, 'maximum_cores': 'none'}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'drizzle', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None}}} INFO stpipe.Spec2Pipeline:pipeline.py:358 Prefetching reference files for dataset: 'f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits' reftypes = ['apcorr', 'area', 'barshadow', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'mrsxartcorr', 'msa', 'msaoper', 'ote', 'pathloss', 'photom', 'regions', 'sflat', 'speckernel', 'specprofile', 'spectrace', 'specwcs', 'wavecorr', 'wavelengthrange', 'wavemap', 'wfssbkg'] INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for BARSHADOW reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for CUBEPAR reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DISTORTION reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DRIZPARS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FILTEROFFSET reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FLAT reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FRINGE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for IFUFORE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for IFUPOST reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for IFUSLICER reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for MRSXARTCORR reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for REGIONS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECKERNEL reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECPROFILE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECTRACE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECWCS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WAVEMAP reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WFSSBKG reference file is 'N/A'. INFO stpipe.Spec2Pipeline:calwebb_spec2.py:92 Starting calwebb_spec2 ... INFO stpipe.Spec2Pipeline:calwebb_spec2.py:110 Processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod INFO stpipe.Spec2Pipeline:calwebb_spec2.py:176 Working on input /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits ... DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:347 Science data does not allow direct background subtraction. Skipping "bkg_subtract". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:359 Science data does not allow imprint processing. Skipping "imprint_subtraction". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:370 Science data does not allow stray light correction. Skipping "straylight". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:375 Science data does not allow fringe correction. Skipping "fringe". INFO stpipe.Spec2Pipeline.assign_wcs:step.py:430 Step assign_wcs running with args (<ImageModel(2048, 2048) from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits>,). INFO stpipe.Spec2Pipeline.assign_wcs:step.py:434 Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:80 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:80 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} ERROR stpipe.Spec2Pipeline.assign_wcs:nirspec.py:568 Missing MSA meta (MSAMETFL) file /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0/jw95065006001_0_short_msa.fits ERROR stpipe.Spec2Pipeline.assign_wcs:nirspec.py:568 Missing MSA meta (MSAMETFL) file /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0/jw95065006001_0_short_msa.fits ERROR stpipe.Spec2Pipeline:calwebb_spec2.py:231 Assign_wcs processing was skipped. ERROR stpipe.Spec2Pipeline:calwebb_spec2.py:231 Aborting remaining processing for this exposure. ERROR stpipe.Spec2Pipeline:calwebb_spec2.py:231 No output product will be created. INFO stpipe.Spec2Pipeline:calwebb_spec2.py:138 Ending calwebb_spec2 INFO stpipe.Spec2Pipeline:step.py:546 Step Spec2Pipeline done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_exceptions.py::test_nirspec_assignwcs_skip | 1.08 | |
|
------------------------------Captured stderr call------------------------------ 2022-10-06 04:21:46,898 - stpipe.Spec2Pipeline - INFO - Spec2Pipeline instance created. 2022-10-06 04:21:46,899 - stpipe.Spec2Pipeline.bkg_subtract - INFO - BackgroundStep instance created. 2022-10-06 04:21:46,900 - stpipe.Spec2Pipeline.assign_wcs - INFO - AssignWcsStep instance created. 2022-10-06 04:21:46,901 - stpipe.Spec2Pipeline.imprint_subtract - INFO - ImprintStep instance created. 2022-10-06 04:21:46,902 - stpipe.Spec2Pipeline.msa_flagging - INFO - MSAFlagOpenStep instance created. 2022-10-06 04:21:46,902 - stpipe.Spec2Pipeline.extract_2d - INFO - Extract2dStep instance created. 2022-10-06 04:21:46,905 - stpipe.Spec2Pipeline.master_background_mos - INFO - MasterBackgroundMosStep instance created. 2022-10-06 04:21:46,906 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - FlatFieldStep instance created. 2022-10-06 04:21:46,906 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - PathLossStep instance created. 2022-10-06 04:21:46,907 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - BarShadowStep instance created. 2022-10-06 04:21:46,907 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - PhotomStep instance created. 2022-10-06 04:21:46,908 - stpipe.Spec2Pipeline.wavecorr - INFO - WavecorrStep instance created. 2022-10-06 04:21:46,909 - stpipe.Spec2Pipeline.flat_field - INFO - FlatFieldStep instance created. 2022-10-06 04:21:46,910 - stpipe.Spec2Pipeline.srctype - INFO - SourceTypeStep instance created. 2022-10-06 04:21:46,910 - stpipe.Spec2Pipeline.straylight - INFO - StraylightStep instance created. 2022-10-06 04:21:46,911 - stpipe.Spec2Pipeline.fringe - INFO - FringeStep instance created. 2022-10-06 04:21:46,912 - stpipe.Spec2Pipeline.pathloss - INFO - PathLossStep instance created. 2022-10-06 04:21:46,912 - stpipe.Spec2Pipeline.barshadow - INFO - BarShadowStep instance created. 2022-10-06 04:21:46,913 - stpipe.Spec2Pipeline.wfss_contam - INFO - WfssContamStep instance created. 2022-10-06 04:21:46,914 - stpipe.Spec2Pipeline.photom - INFO - PhotomStep instance created. 2022-10-06 04:21:46,915 - stpipe.Spec2Pipeline.resample_spec - INFO - ResampleSpecStep instance created. 2022-10-06 04:21:46,916 - stpipe.Spec2Pipeline.cube_build - INFO - CubeBuildStep instance created. 2022-10-06 04:21:46,917 - stpipe.Spec2Pipeline.extract_1d - INFO - Extract1dStep instance created. 2022-10-06 04:21:47,049 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits',). 2022-10-06 04:21:47,064 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'save_bsub': False, 'fail_on_exception': True, 'save_wfss_esec': False, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000}, 'master_background_mos': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'source_type': None}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0'}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'inverse': False, 'source_type': None}, 'wfss_contam': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'save_simulated_image': False, 'save_contam_images': False, 'maximum_cores': 'none'}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'drizzle', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None}}} 2022-10-06 04:21:47,105 - stpipe.Spec2Pipeline - INFO - Prefetching reference files for dataset: 'f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits' reftypes = ['apcorr', 'area', 'barshadow', 'cubepar', 'dflat', 'drizpars', 'extract1d', 'fflat', 'flat', 'fringe', 'mrsxartcorr', 'msaoper', 'pathloss', 'photom', 'sflat', 'speckernel', 'specprofile', 'spectrace', 'wavecorr', 'wavelengthrange', 'wavemap', 'wfssbkg'] 2022-10-06 04:21:47,109 - stpipe.Spec2Pipeline - INFO - Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits'. 2022-10-06 04:21:47,110 - stpipe.Spec2Pipeline - INFO - Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits'. 2022-10-06 04:21:47,111 - stpipe.Spec2Pipeline - INFO - Prefetch for BARSHADOW reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits'. 2022-10-06 04:21:47,111 - stpipe.Spec2Pipeline - INFO - Prefetch for CUBEPAR reference file is 'N/A'. 2022-10-06 04:21:47,111 - stpipe.Spec2Pipeline - INFO - Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits'. 2022-10-06 04:21:47,112 - stpipe.Spec2Pipeline - INFO - Prefetch for DRIZPARS reference file is 'N/A'. 2022-10-06 04:21:47,112 - stpipe.Spec2Pipeline - INFO - Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json'. 2022-10-06 04:21:47,112 - stpipe.Spec2Pipeline - INFO - Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits'. 2022-10-06 04:21:47,113 - stpipe.Spec2Pipeline - INFO - Prefetch for FLAT reference file is 'N/A'. 2022-10-06 04:21:47,113 - stpipe.Spec2Pipeline - INFO - Prefetch for FRINGE reference file is 'N/A'. 2022-10-06 04:21:47,113 - stpipe.Spec2Pipeline - INFO - Prefetch for MRSXARTCORR reference file is 'N/A'. 2022-10-06 04:21:47,113 - stpipe.Spec2Pipeline - INFO - Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. 2022-10-06 04:21:47,113 - stpipe.Spec2Pipeline - INFO - Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits'. 2022-10-06 04:21:47,114 - stpipe.Spec2Pipeline - INFO - Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits'. 2022-10-06 04:21:47,115 - stpipe.Spec2Pipeline - INFO - Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits'. 2022-10-06 04:21:47,115 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECKERNEL reference file is 'N/A'. 2022-10-06 04:21:47,115 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECPROFILE reference file is 'N/A'. 2022-10-06 04:21:47,115 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECTRACE reference file is 'N/A'. 2022-10-06 04:21:47,115 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0004.asdf'. 2022-10-06 04:21:47,116 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf'. 2022-10-06 04:21:47,116 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVEMAP reference file is 'N/A'. 2022-10-06 04:21:47,116 - stpipe.Spec2Pipeline - INFO - Prefetch for WFSSBKG reference file is 'N/A'. 2022-10-06 04:21:47,116 - stpipe.Spec2Pipeline - INFO - Starting calwebb_spec2 ... 2022-10-06 04:21:47,117 - stpipe.Spec2Pipeline - INFO - Processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod 2022-10-06 04:21:47,117 - stpipe.Spec2Pipeline - INFO - Working on input /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits ... 2022-10-06 04:21:47,285 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(2048, 2048) from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits>,). 2022-10-06 04:21:47,286 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} 2022-10-06 04:21:47,286 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step skipped. 2022-10-06 04:21:47,288 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs done 2022-10-06 04:21:47,288 - stpipe.Spec2Pipeline - WARNING - Assign_wcs processing was skipped. 2022-10-06 04:21:47,288 - stpipe.Spec2Pipeline - WARNING - Aborting remaining processing for this exposure. 2022-10-06 04:21:47,288 - stpipe.Spec2Pipeline - WARNING - No output product will be created. 2022-10-06 04:21:47,289 - stpipe.Spec2Pipeline - INFO - Ending calwebb_spec2 2022-10-06 04:21:47,289 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline done -------------------------------Captured log call-------------------------------- INFO stpipe.Spec2Pipeline:step.py:366 Spec2Pipeline instance created. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:366 BackgroundStep instance created. INFO stpipe.Spec2Pipeline.assign_wcs:step.py:366 AssignWcsStep instance created. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:366 ImprintStep instance created. INFO stpipe.Spec2Pipeline.msa_flagging:step.py:366 MSAFlagOpenStep instance created. INFO stpipe.Spec2Pipeline.extract_2d:step.py:366 Extract2dStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos:step.py:366 MasterBackgroundMosStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:step.py:366 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:step.py:366 PathLossStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:step.py:366 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.photom:step.py:366 PhotomStep instance created. INFO stpipe.Spec2Pipeline.wavecorr:step.py:366 WavecorrStep instance created. INFO stpipe.Spec2Pipeline.flat_field:step.py:366 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.srctype:step.py:366 SourceTypeStep instance created. INFO stpipe.Spec2Pipeline.straylight:step.py:366 StraylightStep instance created. INFO stpipe.Spec2Pipeline.fringe:step.py:366 FringeStep instance created. INFO stpipe.Spec2Pipeline.pathloss:step.py:366 PathLossStep instance created. INFO stpipe.Spec2Pipeline.barshadow:step.py:366 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.wfss_contam:step.py:366 WfssContamStep instance created. INFO stpipe.Spec2Pipeline.photom:step.py:366 PhotomStep instance created. INFO stpipe.Spec2Pipeline.resample_spec:step.py:366 ResampleSpecStep instance created. INFO stpipe.Spec2Pipeline.cube_build:step.py:366 CubeBuildStep instance created. INFO stpipe.Spec2Pipeline.extract_1d:step.py:366 Extract1dStep instance created. INFO stpipe.Spec2Pipeline:step.py:430 Step Spec2Pipeline running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits',). INFO stpipe.Spec2Pipeline:step.py:434 Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'save_bsub': False, 'fail_on_exception': True, 'save_wfss_esec': False, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000}, 'master_background_mos': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'source_type': None}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0'}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'inverse': False, 'source_type': None}, 'wfss_contam': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'save_simulated_image': False, 'save_contam_images': False, 'maximum_cores': 'none'}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'drizzle', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None}}} INFO stpipe.Spec2Pipeline:pipeline.py:358 Prefetching reference files for dataset: 'f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits' reftypes = ['apcorr', 'area', 'barshadow', 'cubepar', 'dflat', 'drizpars', 'extract1d', 'fflat', 'flat', 'fringe', 'mrsxartcorr', 'msaoper', 'pathloss', 'photom', 'sflat', 'speckernel', 'specprofile', 'spectrace', 'wavecorr', 'wavelengthrange', 'wavemap', 'wfssbkg'] INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for BARSHADOW reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for CUBEPAR reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DRIZPARS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FLAT reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FRINGE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for MRSXARTCORR reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECKERNEL reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECPROFILE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECTRACE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WAVEMAP reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WFSSBKG reference file is 'N/A'. INFO stpipe.Spec2Pipeline:calwebb_spec2.py:92 Starting calwebb_spec2 ... INFO stpipe.Spec2Pipeline:calwebb_spec2.py:110 Processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod INFO stpipe.Spec2Pipeline:calwebb_spec2.py:176 Working on input /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits ... DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:347 Science data does not allow direct background subtraction. Skipping "bkg_subtract". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:359 Science data does not allow imprint processing. Skipping "imprint_subtraction". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:370 Science data does not allow stray light correction. Skipping "straylight". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:375 Science data does not allow fringe correction. Skipping "fringe". INFO stpipe.Spec2Pipeline.assign_wcs:step.py:430 Step assign_wcs running with args (<ImageModel(2048, 2048) from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits>,). INFO stpipe.Spec2Pipeline.assign_wcs:step.py:434 Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} INFO stpipe.Spec2Pipeline.assign_wcs:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.assign_wcs:step.py:546 Step assign_wcs done WARNING stpipe.Spec2Pipeline:calwebb_spec2.py:228 Assign_wcs processing was skipped. WARNING stpipe.Spec2Pipeline:calwebb_spec2.py:228 Aborting remaining processing for this exposure. WARNING stpipe.Spec2Pipeline:calwebb_spec2.py:228 No output product will be created. INFO stpipe.Spec2Pipeline:calwebb_spec2.py:138 Ending calwebb_spec2 INFO stpipe.Spec2Pipeline:step.py:546 Step Spec2Pipeline done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_exceptions.py::test_nirspec_nrs2_nodata_api | 1.85 | |
|
------------------------------Captured stderr call------------------------------ 2022-10-06 04:21:48,227 - stpipe.Spec2Pipeline - INFO - Spec2Pipeline instance created. 2022-10-06 04:21:48,228 - stpipe.Spec2Pipeline.bkg_subtract - INFO - BackgroundStep instance created. 2022-10-06 04:21:48,229 - stpipe.Spec2Pipeline.assign_wcs - INFO - AssignWcsStep instance created. 2022-10-06 04:21:48,230 - stpipe.Spec2Pipeline.imprint_subtract - INFO - ImprintStep instance created. 2022-10-06 04:21:48,230 - stpipe.Spec2Pipeline.msa_flagging - INFO - MSAFlagOpenStep instance created. 2022-10-06 04:21:48,231 - stpipe.Spec2Pipeline.extract_2d - INFO - Extract2dStep instance created. 2022-10-06 04:21:48,233 - stpipe.Spec2Pipeline.master_background_mos - INFO - MasterBackgroundMosStep instance created. 2022-10-06 04:21:48,234 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - FlatFieldStep instance created. 2022-10-06 04:21:48,235 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - PathLossStep instance created. 2022-10-06 04:21:48,235 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - BarShadowStep instance created. 2022-10-06 04:21:48,236 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - PhotomStep instance created. 2022-10-06 04:21:48,237 - stpipe.Spec2Pipeline.wavecorr - INFO - WavecorrStep instance created. 2022-10-06 04:21:48,238 - stpipe.Spec2Pipeline.flat_field - INFO - FlatFieldStep instance created. 2022-10-06 04:21:48,238 - stpipe.Spec2Pipeline.srctype - INFO - SourceTypeStep instance created. 2022-10-06 04:21:48,239 - stpipe.Spec2Pipeline.straylight - INFO - StraylightStep instance created. 2022-10-06 04:21:48,240 - stpipe.Spec2Pipeline.fringe - INFO - FringeStep instance created. 2022-10-06 04:21:48,240 - stpipe.Spec2Pipeline.pathloss - INFO - PathLossStep instance created. 2022-10-06 04:21:48,241 - stpipe.Spec2Pipeline.barshadow - INFO - BarShadowStep instance created. 2022-10-06 04:21:48,242 - stpipe.Spec2Pipeline.wfss_contam - INFO - WfssContamStep instance created. 2022-10-06 04:21:48,243 - stpipe.Spec2Pipeline.photom - INFO - PhotomStep instance created. 2022-10-06 04:21:48,244 - stpipe.Spec2Pipeline.resample_spec - INFO - ResampleSpecStep instance created. 2022-10-06 04:21:48,245 - stpipe.Spec2Pipeline.cube_build - INFO - CubeBuildStep instance created. 2022-10-06 04:21:48,246 - stpipe.Spec2Pipeline.extract_1d - INFO - Extract1dStep instance created. 2022-10-06 04:21:48,368 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_nrs2_nodata_api0/jw84700006001_02101_00001_nrs2_rate.fits',). 2022-10-06 04:21:48,380 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_bsub': False, 'fail_on_exception': True, 'save_wfss_esec': False, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000}, 'master_background_mos': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'source_type': None}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'wfss_contam': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_simulated_image': False, 'save_contam_images': False, 'maximum_cores': 'none'}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'drizzle', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None}}} 2022-10-06 04:21:48,601 - stpipe.Spec2Pipeline - INFO - Prefetching reference files for dataset: 'jw84700006001_02101_00001_nrs2_rate.fits' reftypes = ['apcorr', 'area', 'barshadow', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'mrsxartcorr', 'msa', 'msaoper', 'ote', 'pathloss', 'photom', 'regions', 'sflat', 'speckernel', 'specprofile', 'spectrace', 'specwcs', 'wavecorr', 'wavelengthrange', 'wavemap', 'wfssbkg'] 2022-10-06 04:21:48,621 - stpipe.Spec2Pipeline - INFO - Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0006.asdf'. 2022-10-06 04:21:48,623 - stpipe.Spec2Pipeline - INFO - Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0008.fits'. 2022-10-06 04:21:48,623 - stpipe.Spec2Pipeline - INFO - Prefetch for BARSHADOW reference file is 'N/A'. 2022-10-06 04:21:48,623 - stpipe.Spec2Pipeline - INFO - Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. 2022-10-06 04:21:48,624 - stpipe.Spec2Pipeline - INFO - Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. 2022-10-06 04:21:48,624 - stpipe.Spec2Pipeline - INFO - Prefetch for CUBEPAR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_cubepar_0003.fits'. 2022-10-06 04:21:48,625 - stpipe.Spec2Pipeline - INFO - Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0002.fits'. 2022-10-06 04:21:48,626 - stpipe.Spec2Pipeline - INFO - Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf'. 2022-10-06 04:21:48,627 - stpipe.Spec2Pipeline - INFO - Prefetch for DISTORTION reference file is 'N/A'. 2022-10-06 04:21:48,627 - stpipe.Spec2Pipeline - INFO - Prefetch for DRIZPARS reference file is 'N/A'. 2022-10-06 04:21:48,627 - stpipe.Spec2Pipeline - INFO - Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0001.asdf'. 2022-10-06 04:21:48,628 - stpipe.Spec2Pipeline - INFO - Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0013.fits'. 2022-10-06 04:21:48,629 - stpipe.Spec2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is 'N/A'. 2022-10-06 04:21:48,629 - stpipe.Spec2Pipeline - INFO - Prefetch for FLAT reference file is 'N/A'. 2022-10-06 04:21:48,629 - stpipe.Spec2Pipeline - INFO - Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf'. 2022-10-06 04:21:48,630 - stpipe.Spec2Pipeline - INFO - Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. 2022-10-06 04:21:48,630 - stpipe.Spec2Pipeline - INFO - Prefetch for FRINGE reference file is 'N/A'. 2022-10-06 04:21:48,630 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUFORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf'. 2022-10-06 04:21:48,631 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUPOST reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf'. 2022-10-06 04:21:48,632 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUSLICER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'. 2022-10-06 04:21:48,633 - stpipe.Spec2Pipeline - INFO - Prefetch for MRSXARTCORR reference file is 'N/A'. 2022-10-06 04:21:48,633 - stpipe.Spec2Pipeline - INFO - Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. 2022-10-06 04:21:48,634 - stpipe.Spec2Pipeline - INFO - Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. 2022-10-06 04:21:48,634 - stpipe.Spec2Pipeline - INFO - Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. 2022-10-06 04:21:48,635 - stpipe.Spec2Pipeline - INFO - Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0003.fits'. 2022-10-06 04:21:48,636 - stpipe.Spec2Pipeline - INFO - Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0016.fits'. 2022-10-06 04:21:48,637 - stpipe.Spec2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'. 2022-10-06 04:21:48,637 - stpipe.Spec2Pipeline - INFO - Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0031.fits'. 2022-10-06 04:21:48,638 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECKERNEL reference file is 'N/A'. 2022-10-06 04:21:48,638 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECPROFILE reference file is 'N/A'. 2022-10-06 04:21:48,638 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECTRACE reference file is 'N/A'. 2022-10-06 04:21:48,638 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'. 2022-10-06 04:21:48,638 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVECORR reference file is 'N/A'. 2022-10-06 04:21:48,638 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf'. 2022-10-06 04:21:48,639 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVEMAP reference file is 'N/A'. 2022-10-06 04:21:48,639 - stpipe.Spec2Pipeline - INFO - Prefetch for WFSSBKG reference file is 'N/A'. 2022-10-06 04:21:48,639 - stpipe.Spec2Pipeline - INFO - Starting calwebb_spec2 ... 2022-10-06 04:21:48,640 - stpipe.Spec2Pipeline - INFO - Processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_nrs2_nodata_api0/jw84700006001_02101_00001_nrs2 2022-10-06 04:21:48,640 - stpipe.Spec2Pipeline - INFO - Working on input /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_nrs2_nodata_api0/jw84700006001_02101_00001_nrs2_rate.fits ... 2022-10-06 04:21:48,979 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<IFUImageModel(2048, 2048) from jw84700006001_02101_00001_nrs2_rate.fits>,). 2022-10-06 04:21:48,980 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_nrs2_nodata_api0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} 2022-10-06 04:21:49,141 - stpipe.Spec2Pipeline.assign_wcs - CRITICAL - No IFU slices fall on detector NRS2 2022-10-06 04:21:49,141 - stpipe.Spec2Pipeline - ERROR - Assign_wcs processing was skipped. 2022-10-06 04:21:49,141 - stpipe.Spec2Pipeline - ERROR - Aborting remaining processing for this exposure. 2022-10-06 04:21:49,141 - stpipe.Spec2Pipeline - ERROR - No output product will be created. -------------------------------Captured log call-------------------------------- INFO stpipe.Spec2Pipeline:step.py:366 Spec2Pipeline instance created. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:366 BackgroundStep instance created. INFO stpipe.Spec2Pipeline.assign_wcs:step.py:366 AssignWcsStep instance created. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:366 ImprintStep instance created. INFO stpipe.Spec2Pipeline.msa_flagging:step.py:366 MSAFlagOpenStep instance created. INFO stpipe.Spec2Pipeline.extract_2d:step.py:366 Extract2dStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos:step.py:366 MasterBackgroundMosStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:step.py:366 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:step.py:366 PathLossStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:step.py:366 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.photom:step.py:366 PhotomStep instance created. INFO stpipe.Spec2Pipeline.wavecorr:step.py:366 WavecorrStep instance created. INFO stpipe.Spec2Pipeline.flat_field:step.py:366 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.srctype:step.py:366 SourceTypeStep instance created. INFO stpipe.Spec2Pipeline.straylight:step.py:366 StraylightStep instance created. INFO stpipe.Spec2Pipeline.fringe:step.py:366 FringeStep instance created. INFO stpipe.Spec2Pipeline.pathloss:step.py:366 PathLossStep instance created. INFO stpipe.Spec2Pipeline.barshadow:step.py:366 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.wfss_contam:step.py:366 WfssContamStep instance created. INFO stpipe.Spec2Pipeline.photom:step.py:366 PhotomStep instance created. INFO stpipe.Spec2Pipeline.resample_spec:step.py:366 ResampleSpecStep instance created. INFO stpipe.Spec2Pipeline.cube_build:step.py:366 CubeBuildStep instance created. INFO stpipe.Spec2Pipeline.extract_1d:step.py:366 Extract1dStep instance created. INFO stpipe.Spec2Pipeline:step.py:430 Step Spec2Pipeline running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_nrs2_nodata_api0/jw84700006001_02101_00001_nrs2_rate.fits',). INFO stpipe.Spec2Pipeline:step.py:434 Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_bsub': False, 'fail_on_exception': True, 'save_wfss_esec': False, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000}, 'master_background_mos': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'source_type': None}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'wfss_contam': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_simulated_image': False, 'save_contam_images': False, 'maximum_cores': 'none'}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'drizzle', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None}}} INFO stpipe.Spec2Pipeline:pipeline.py:358 Prefetching reference files for dataset: 'jw84700006001_02101_00001_nrs2_rate.fits' reftypes = ['apcorr', 'area', 'barshadow', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'mrsxartcorr', 'msa', 'msaoper', 'ote', 'pathloss', 'photom', 'regions', 'sflat', 'speckernel', 'specprofile', 'spectrace', 'specwcs', 'wavecorr', 'wavelengthrange', 'wavemap', 'wfssbkg'] INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0006.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0008.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for BARSHADOW reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for CUBEPAR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_cubepar_0003.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0002.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DISTORTION reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DRIZPARS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0001.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0013.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FILTEROFFSET reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FLAT reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FRINGE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for IFUFORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for IFUPOST reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for IFUSLICER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for MRSXARTCORR reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0003.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0016.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for REGIONS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0031.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECKERNEL reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECPROFILE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECTRACE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECWCS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WAVECORR reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WAVEMAP reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WFSSBKG reference file is 'N/A'. INFO stpipe.Spec2Pipeline:calwebb_spec2.py:92 Starting calwebb_spec2 ... INFO stpipe.Spec2Pipeline:calwebb_spec2.py:110 Processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_nrs2_nodata_api0/jw84700006001_02101_00001_nrs2 INFO stpipe.Spec2Pipeline:calwebb_spec2.py:176 Working on input /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_nrs2_nodata_api0/jw84700006001_02101_00001_nrs2_rate.fits ... DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:347 Science data does not allow direct background subtraction. Skipping "bkg_subtract". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:359 Science data does not allow imprint processing. Skipping "imprint_subtraction". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:370 Science data does not allow stray light correction. Skipping "straylight". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:375 Science data does not allow fringe correction. Skipping "fringe". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:386 Science data does not allow barshadow correction. Skipping "barshadow". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:391 Science data does not allow master background correction. Skipping "master_background_mos". INFO stpipe.Spec2Pipeline.assign_wcs:step.py:430 Step assign_wcs running with args (<IFUImageModel(2048, 2048) from jw84700006001_02101_00001_nrs2_rate.fits>,). INFO stpipe.Spec2Pipeline.assign_wcs:step.py:434 Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_nrs2_nodata_api0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:80 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:80 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} CRITICAL stpipe.Spec2Pipeline.assign_wcs:nirspec.py:196 No IFU slices fall on detector NRS2 CRITICAL stpipe.Spec2Pipeline.assign_wcs:nirspec.py:196 No IFU slices fall on detector NRS2 ERROR stpipe.Spec2Pipeline:calwebb_spec2.py:231 Assign_wcs processing was skipped. ERROR stpipe.Spec2Pipeline:calwebb_spec2.py:231 Aborting remaining processing for this exposure. ERROR stpipe.Spec2Pipeline:calwebb_spec2.py:231 No output product will be created. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[fullframe-assign_wcs] | 121.64 | |
|
-----------------------------Captured stderr setup------------------------------ 2022-10-06 04:21:51,489 - stpipe.Spec2Pipeline - INFO - Spec2Pipeline instance created. 2022-10-06 04:21:51,491 - stpipe.Spec2Pipeline.bkg_subtract - INFO - BackgroundStep instance created. 2022-10-06 04:21:51,492 - stpipe.Spec2Pipeline.assign_wcs - INFO - AssignWcsStep instance created. 2022-10-06 04:21:51,493 - stpipe.Spec2Pipeline.imprint_subtract - INFO - ImprintStep instance created. 2022-10-06 04:21:51,494 - stpipe.Spec2Pipeline.msa_flagging - INFO - MSAFlagOpenStep instance created. 2022-10-06 04:21:51,495 - stpipe.Spec2Pipeline.extract_2d - INFO - Extract2dStep instance created. 2022-10-06 04:21:51,497 - stpipe.Spec2Pipeline.master_background_mos - INFO - MasterBackgroundMosStep instance created. 2022-10-06 04:21:51,498 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - FlatFieldStep instance created. 2022-10-06 04:21:51,499 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - PathLossStep instance created. 2022-10-06 04:21:51,499 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - BarShadowStep instance created. 2022-10-06 04:21:51,500 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - PhotomStep instance created. 2022-10-06 04:21:51,501 - stpipe.Spec2Pipeline.wavecorr - INFO - WavecorrStep instance created. 2022-10-06 04:21:51,502 - stpipe.Spec2Pipeline.flat_field - INFO - FlatFieldStep instance created. 2022-10-06 04:21:51,502 - stpipe.Spec2Pipeline.srctype - INFO - SourceTypeStep instance created. 2022-10-06 04:21:51,503 - stpipe.Spec2Pipeline.straylight - INFO - StraylightStep instance created. 2022-10-06 04:21:51,504 - stpipe.Spec2Pipeline.fringe - INFO - FringeStep instance created. 2022-10-06 04:21:51,504 - stpipe.Spec2Pipeline.pathloss - INFO - PathLossStep instance created. 2022-10-06 04:21:51,505 - stpipe.Spec2Pipeline.barshadow - INFO - BarShadowStep instance created. 2022-10-06 04:21:51,506 - stpipe.Spec2Pipeline.wfss_contam - INFO - WfssContamStep instance created. 2022-10-06 04:21:51,507 - stpipe.Spec2Pipeline.photom - INFO - PhotomStep instance created. 2022-10-06 04:21:51,508 - stpipe.Spec2Pipeline.resample_spec - INFO - ResampleSpecStep instance created. 2022-10-06 04:21:51,509 - stpipe.Spec2Pipeline.cube_build - INFO - CubeBuildStep instance created. 2022-10-06 04:21:51,510 - stpipe.Spec2Pipeline.extract_1d - INFO - Extract1dStep instance created. 2022-10-06 04:21:51,818 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw00023001001_01101_00001_nrs1_rate.fits',). 2022-10-06 04:21:51,831 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_bsub': False, 'fail_on_exception': True, 'save_wfss_esec': False, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000}, 'master_background_mos': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'source_type': None}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'wfss_contam': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_simulated_image': False, 'save_contam_images': False, 'maximum_cores': 'none'}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'drizzle', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None}}} 2022-10-06 04:21:51,940 - stpipe.Spec2Pipeline - INFO - Prefetching reference files for dataset: 'jw00023001001_01101_00001_nrs1_rate.fits' reftypes = ['apcorr', 'area', 'barshadow', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'mrsxartcorr', 'msa', 'msaoper', 'ote', 'pathloss', 'photom', 'regions', 'sflat', 'speckernel', 'specprofile', 'spectrace', 'specwcs', 'wavecorr', 'wavelengthrange', 'wavemap', 'wfssbkg'] 2022-10-06 04:21:51,959 - stpipe.Spec2Pipeline - INFO - Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0003.fits'. 2022-10-06 04:21:51,961 - stpipe.Spec2Pipeline - INFO - Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0021.fits'. 2022-10-06 04:21:51,963 - stpipe.Spec2Pipeline - INFO - Prefetch for BARSHADOW reference file is 'N/A'. 2022-10-06 04:21:51,963 - stpipe.Spec2Pipeline - INFO - Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. 2022-10-06 04:21:51,964 - stpipe.Spec2Pipeline - INFO - Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. 2022-10-06 04:21:51,965 - stpipe.Spec2Pipeline - INFO - Prefetch for CUBEPAR reference file is 'N/A'. 2022-10-06 04:21:51,965 - stpipe.Spec2Pipeline - INFO - Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits'. 2022-10-06 04:21:51,966 - stpipe.Spec2Pipeline - INFO - Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0033.asdf'. 2022-10-06 04:21:51,968 - stpipe.Spec2Pipeline - INFO - Prefetch for DISTORTION reference file is 'N/A'. 2022-10-06 04:21:51,968 - stpipe.Spec2Pipeline - INFO - Prefetch for DRIZPARS reference file is 'N/A'. 2022-10-06 04:21:51,968 - stpipe.Spec2Pipeline - INFO - Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0004.json'. 2022-10-06 04:21:51,970 - stpipe.Spec2Pipeline - INFO - Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0006.fits'. 2022-10-06 04:21:51,971 - stpipe.Spec2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is 'N/A'. 2022-10-06 04:21:51,971 - stpipe.Spec2Pipeline - INFO - Prefetch for FLAT reference file is 'N/A'. 2022-10-06 04:21:51,971 - stpipe.Spec2Pipeline - INFO - Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0026.asdf'. 2022-10-06 04:21:51,973 - stpipe.Spec2Pipeline - INFO - Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. 2022-10-06 04:21:51,974 - stpipe.Spec2Pipeline - INFO - Prefetch for FRINGE reference file is 'N/A'. 2022-10-06 04:21:51,974 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'. 2022-10-06 04:21:51,974 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'. 2022-10-06 04:21:51,974 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'. 2022-10-06 04:21:51,974 - stpipe.Spec2Pipeline - INFO - Prefetch for MRSXARTCORR reference file is 'N/A'. 2022-10-06 04:21:51,974 - stpipe.Spec2Pipeline - INFO - Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. 2022-10-06 04:21:51,975 - stpipe.Spec2Pipeline - INFO - Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. 2022-10-06 04:21:51,976 - stpipe.Spec2Pipeline - INFO - Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. 2022-10-06 04:21:51,977 - stpipe.Spec2Pipeline - INFO - Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0001.fits'. 2022-10-06 04:21:51,978 - stpipe.Spec2Pipeline - INFO - Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0014.fits'. 2022-10-06 04:21:51,979 - stpipe.Spec2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'. 2022-10-06 04:21:51,979 - stpipe.Spec2Pipeline - INFO - Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0029.fits'. 2022-10-06 04:21:51,980 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECKERNEL reference file is 'N/A'. 2022-10-06 04:21:51,980 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECPROFILE reference file is 'N/A'. 2022-10-06 04:21:51,980 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECTRACE reference file is 'N/A'. 2022-10-06 04:21:51,980 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'. 2022-10-06 04:21:51,980 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0003.asdf'. 2022-10-06 04:21:51,981 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf'. 2022-10-06 04:21:51,982 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVEMAP reference file is 'N/A'. 2022-10-06 04:21:51,983 - stpipe.Spec2Pipeline - INFO - Prefetch for WFSSBKG reference file is 'N/A'. 2022-10-06 04:21:51,983 - stpipe.Spec2Pipeline - INFO - Starting calwebb_spec2 ... 2022-10-06 04:21:51,984 - stpipe.Spec2Pipeline - INFO - Processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw00023001001_01101_00001_nrs1 2022-10-06 04:21:51,984 - stpipe.Spec2Pipeline - INFO - Working on input /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw00023001001_01101_00001_nrs1_rate.fits ... 2022-10-06 04:21:52,428 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(2048, 2048) from jw00023001001_01101_00001_nrs1_rate.fits>,). 2022-10-06 04:21:52,429 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} 2022-10-06 04:21:52,602 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_ytilt is 0.02 deg 2022-10-06 04:21:52,602 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.01 deg 2022-10-06 04:21:52,603 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_y correction: 0.44965731468948844 deg 2022-10-06 04:21:52,604 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_x correction: 0.0 deg 2022-10-06 04:21:52,827 - stpipe.Spec2Pipeline.assign_wcs - INFO - Slits projected on detector NRS1: ['S200A1', 'S200A2', 'S400A1', 'S1600A1', 'S200B1'] 2022-10-06 04:21:52,827 - stpipe.Spec2Pipeline.assign_wcs - INFO - Computing WCS for 5 open slitlets 2022-10-06 04:21:52,863 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_ytilt is 0.02 deg 2022-10-06 04:21:52,863 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.01 deg 2022-10-06 04:21:52,863 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_y correction: 0.44965731468948844 deg 2022-10-06 04:21:52,864 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_x correction: 0.0 deg 2022-10-06 04:21:52,879 - stpipe.Spec2Pipeline.assign_wcs - INFO - SPORDER= -1, wrange=[7e-07, 1.27e-06] 2022-10-06 04:21:53,026 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 1 2022-10-06 04:21:53,026 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 2 2022-10-06 04:21:53,026 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 3 2022-10-06 04:21:53,026 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 4 2022-10-06 04:21:53,026 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 5 open slits in quadrant 5 2022-10-06 04:21:53,208 - stpipe.Spec2Pipeline.assign_wcs - INFO - Created a NIRSPEC nrs_fixedslit pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0033.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0026.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} 2022-10-06 04:21:53,493 - stpipe.Spec2Pipeline.assign_wcs - INFO - COMPLETED assign_wcs 2022-10-06 04:21:54,200 - stpipe.Spec2Pipeline.assign_wcs - INFO - Saved model in jw00023001001_01101_00001_nrs1_assign_wcs.fits 2022-10-06 04:21:54,200 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs done 2022-10-06 04:21:54,329 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract running with args (<ImageModel(2048, 2048) from jw00023001001_01101_00001_nrs1_assign_wcs.fits>, []). 2022-10-06 04:21:54,330 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None} 2022-10-06 04:21:54,330 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step skipped. 2022-10-06 04:21:54,332 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract done 2022-10-06 04:21:54,451 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract running with args (<ImageModel(2048, 2048) from jw00023001001_01101_00001_nrs1_assign_wcs.fits>, []). 2022-10-06 04:21:54,452 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'} 2022-10-06 04:21:54,452 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step skipped. 2022-10-06 04:21:54,454 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract done 2022-10-06 04:21:54,574 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging running with args (<ImageModel(2048, 2048) from jw00023001001_01101_00001_nrs1_assign_wcs.fits>,). 2022-10-06 04:21:54,574 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'} 2022-10-06 04:21:54,575 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step skipped. 2022-10-06 04:21:54,577 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging done 2022-10-06 04:21:54,695 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d running with args (<ImageModel(2048, 2048) from jw00023001001_01101_00001_nrs1_assign_wcs.fits>,). 2022-10-06 04:21:54,696 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000} 2022-10-06 04:21:54,713 - stpipe.Spec2Pipeline.extract_2d - INFO - EXP_TYPE is NRS_FIXEDSLIT 2022-10-06 04:21:54,929 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: S200A1 2022-10-06 04:21:54,929 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 0 2048 2022-10-06 04:21:54,929 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1058 1116 2022-10-06 04:21:55,185 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2022-10-06 04:21:55,193 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 15.126398753 15.121897628 15.125938751 15.122803468 15.125885327 15.122777650 15.126345318 15.121871801 2022-10-06 04:21:55,194 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 15.126398753 15.121897628 15.125938751 15.122803468 15.125885327 15.122777650 15.126345318 15.121871801 2022-10-06 04:21:55,384 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: S200A2 2022-10-06 04:21:55,384 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 0 1974 2022-10-06 04:21:55,384 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1021 1078 2022-10-06 04:21:55,633 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2022-10-06 04:21:55,640 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 15.120865130 15.120399965 15.120407962 15.121303054 15.120354955 15.121277371 15.120812112 15.120374275 2022-10-06 04:21:55,641 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 15.120865130 15.120399965 15.120407962 15.121303054 15.120354955 15.121277371 15.120812112 15.120374275 2022-10-06 04:21:55,995 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: S400A1 2022-10-06 04:21:55,995 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 0 2048 2022-10-06 04:21:55,995 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 981 1044 2022-10-06 04:21:56,260 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2022-10-06 04:21:56,268 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 15.123701334 15.122935633 15.123177717 15.123967699 15.123073180 15.123917142 15.123596771 15.122885057 2022-10-06 04:21:56,269 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 15.123701334 15.122935633 15.123177717 15.123967699 15.123073180 15.123917142 15.123596771 15.122885057 2022-10-06 04:21:56,447 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: S1600A1 2022-10-06 04:21:56,448 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 0 2048 2022-10-06 04:21:56,448 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 962 1001 2022-10-06 04:21:56,674 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2022-10-06 04:21:56,682 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 15.123945145 15.124446650 15.123721208 15.124887775 15.123306821 15.124687442 15.123530715 15.124246288 2022-10-06 04:21:56,682 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 15.123945145 15.124446650 15.123721208 15.124887775 15.123306821 15.124687442 15.123530715 15.124246288 2022-10-06 04:21:56,843 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: S200B1 2022-10-06 04:21:56,843 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 1273 2048 2022-10-06 04:21:56,844 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 923 964 2022-10-06 04:21:57,040 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2022-10-06 04:21:57,048 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 15.165114571 15.144804371 15.164646023 15.145703307 15.164593736 15.145678580 15.165062271 15.144779641 2022-10-06 04:21:57,049 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 15.165114571 15.144804371 15.164646023 15.145703307 15.164593736 15.145678580 15.165062271 15.144779641 2022-10-06 04:21:58,823 - stpipe.Spec2Pipeline.extract_2d - INFO - Saved model in jw00023001001_01101_00001_nrs1_extract_2d.fits 2022-10-06 04:21:58,823 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d done 2022-10-06 04:21:58,977 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype running with args (<MultiSlitModel from jw00023001001_01101_00001_nrs1_extract_2d.fits>,). 2022-10-06 04:21:58,978 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'source_type': None} 2022-10-06 04:21:58,985 - stpipe.Spec2Pipeline.srctype - INFO - Input EXP_TYPE is NRS_FIXEDSLIT 2022-10-06 04:21:58,986 - stpipe.Spec2Pipeline.srctype - INFO - Input SRCTYAPT = None 2022-10-06 04:21:58,986 - stpipe.Spec2Pipeline.srctype - WARNING - SRCTYAPT keyword not found in input; using SRCTYPE instead 2022-10-06 04:21:58,986 - stpipe.Spec2Pipeline.srctype - INFO - Input source type is unknown; setting default SRCTYPE = POINT 2022-10-06 04:22:00,326 - stpipe.Spec2Pipeline.srctype - INFO - Saved model in jw00023001001_01101_00001_nrs1_srctype.fits 2022-10-06 04:22:00,326 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype done 2022-10-06 04:22:00,478 - stpipe.Spec2Pipeline.master_background_mos - INFO - Step master_background_mos running with args (<MultiSlitModel from jw00023001001_01101_00001_nrs1_srctype.fits>,). 2022-10-06 04:22:00,481 - stpipe.Spec2Pipeline.master_background_mos - INFO - Step master_background_mos parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}}} 2022-10-06 04:22:00,481 - stpipe.Spec2Pipeline.master_background_mos - INFO - Step skipped. 2022-10-06 04:22:00,482 - stpipe.Spec2Pipeline.master_background_mos - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:22:00,482 - stpipe.Spec2Pipeline.master_background_mos - INFO - Step master_background_mos done 2022-10-06 04:22:00,626 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr running with args (<MultiSlitModel from jw00023001001_01101_00001_nrs1_srctype.fits>,). 2022-10-06 04:22:00,627 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'} 2022-10-06 04:22:01,109 - stpipe.Spec2Pipeline.wavecorr - INFO - Using WAVECORR reference file /grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0003.asdf 2022-10-06 04:22:02,089 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a POINT source type in slit S400A1 2022-10-06 04:22:02,089 - stpipe.Spec2Pipeline.wavecorr - INFO - slit name S400A1 2022-10-06 04:22:02,090 - stpipe.Spec2Pipeline.wavecorr - INFO - xoffset, yoffset, 0.0, 0.0 2022-10-06 04:22:02,100 - stpipe.Spec2Pipeline.wavecorr - INFO - Source X/Y position in the slit: 0.004938526981283373, -0.02795306204991911 2022-10-06 04:22:02,342 - stpipe.Spec2Pipeline.wavecorr - INFO - Using wavelength zero-point correction for aperture S400A1 2022-10-06 04:22:03,709 - stpipe.Spec2Pipeline.wavecorr - INFO - Saved model in jw00023001001_01101_00001_nrs1_wavecorr.fits 2022-10-06 04:22:03,710 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr done 2022-10-06 04:22:03,894 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field running with args (<MultiSlitModel from jw00023001001_01101_00001_nrs1_wavecorr.fits>,). 2022-10-06 04:22:03,895 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2022-10-06 04:22:06,968 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit S200A1 2022-10-06 04:22:23,546 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit S200A2 2022-10-06 04:22:39,443 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit S400A1 2022-10-06 04:22:39,443 - stpipe.Spec2Pipeline.flat_field - INFO - Creating wavelength array from WCS for slit S400A1 2022-10-06 04:23:13,767 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit S1600A1 2022-10-06 04:23:22,024 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit S200B1 2022-10-06 04:23:29,932 - stpipe.Spec2Pipeline.flat_field - INFO - Saved model in jw00023001001_01101_00001_nrs1_flat_field.fits 2022-10-06 04:23:29,932 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field done 2022-10-06 04:23:30,128 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss running with args (<MultiSlitModel from jw00023001001_01101_00001_nrs1_flat_field.fits>,). 2022-10-06 04:23:30,130 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None} 2022-10-06 04:23:30,157 - stpipe.Spec2Pipeline.pathloss - INFO - Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0001.fits 2022-10-06 04:23:30,278 - stpipe.Spec2Pipeline.pathloss - INFO - Input exposure type is NRS_FIXEDSLIT 2022-10-06 04:23:31,303 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit S200A1 2022-10-06 04:23:31,304 - stpipe.Spec2Pipeline.pathloss - INFO - Using aperture S200A1 2022-10-06 04:23:31,337 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit S200A2 2022-10-06 04:23:31,337 - stpipe.Spec2Pipeline.pathloss - INFO - Using aperture S200A2 2022-10-06 04:23:31,368 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit S400A1 2022-10-06 04:23:31,368 - stpipe.Spec2Pipeline.pathloss - WARNING - Cannot find matching pathloss model for S400A1 2022-10-06 04:23:31,368 - stpipe.Spec2Pipeline.pathloss - WARNING - Skipping pathloss correction for this slit 2022-10-06 04:23:31,369 - stpipe.Spec2Pipeline.pathloss - WARNING - No correction provided for slit 2. Skipping 2022-10-06 04:23:31,369 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit S1600A1 2022-10-06 04:23:31,369 - stpipe.Spec2Pipeline.pathloss - INFO - Using aperture S1600A1 2022-10-06 04:23:31,398 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit S200B1 2022-10-06 04:23:31,399 - stpipe.Spec2Pipeline.pathloss - INFO - Using aperture S200B1 2022-10-06 04:23:32,881 - stpipe.Spec2Pipeline.pathloss - INFO - Saved model in jw00023001001_01101_00001_nrs1_pathloss.fits 2022-10-06 04:23:32,881 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss done 2022-10-06 04:23:33,068 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow running with args (<MultiSlitModel from jw00023001001_01101_00001_nrs1_pathloss.fits>,). 2022-10-06 04:23:33,069 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None} 2022-10-06 04:23:33,069 - stpipe.Spec2Pipeline.barshadow - INFO - Step skipped. 2022-10-06 04:23:33,072 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow done 2022-10-06 04:23:33,251 - stpipe.Spec2Pipeline.photom - INFO - Step photom running with args (<MultiSlitModel from jw00023001001_01101_00001_nrs1_pathloss.fits>,). 2022-10-06 04:23:33,252 - stpipe.Spec2Pipeline.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None} 2022-10-06 04:23:33,296 - stpipe.Spec2Pipeline.photom - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0014.fits 2022-10-06 04:23:33,296 - stpipe.Spec2Pipeline.photom - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0021.fits 2022-10-06 04:23:34,115 - stpipe.Spec2Pipeline.photom - INFO - Using instrument: NIRSPEC 2022-10-06 04:23:34,115 - stpipe.Spec2Pipeline.photom - INFO - detector: NRS1 2022-10-06 04:23:34,115 - stpipe.Spec2Pipeline.photom - INFO - exp_type: NRS_FIXEDSLIT 2022-10-06 04:23:34,115 - stpipe.Spec2Pipeline.photom - INFO - filter: F070LP 2022-10-06 04:23:34,115 - stpipe.Spec2Pipeline.photom - INFO - grating: G140H 2022-10-06 04:23:34,180 - stpipe.Spec2Pipeline.photom - INFO - Working on slit S200A1 2022-10-06 04:23:34,181 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 1 2022-10-06 04:23:34,193 - stpipe.Spec2Pipeline.photom - INFO - Working on slit S200A2 2022-10-06 04:23:34,193 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 1 2022-10-06 04:23:34,205 - stpipe.Spec2Pipeline.photom - INFO - Working on slit S400A1 2022-10-06 04:23:34,205 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 1 2022-10-06 04:23:34,336 - stpipe.Spec2Pipeline.photom - INFO - Working on slit S1600A1 2022-10-06 04:23:34,337 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 1 2022-10-06 04:23:34,349 - stpipe.Spec2Pipeline.photom - INFO - Working on slit S200B1 2022-10-06 04:23:34,350 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 1 2022-10-06 04:23:34,365 - stpipe.Spec2Pipeline.photom - INFO - Step photom done 2022-10-06 04:23:34,607 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec running with args (<MultiSlitModel from jw00023001001_01101_00001_nrs1_cal.fits>,). 2022-10-06 04:23:34,609 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True} 2022-10-06 04:23:34,652 - stpipe.Spec2Pipeline.resample_spec - INFO - No DRIZPARS reffile 2022-10-06 04:23:34,653 - stpipe.Spec2Pipeline.resample_spec - INFO - using: pixfrac=1.0 2022-10-06 04:23:34,653 - stpipe.Spec2Pipeline.resample_spec - INFO - using: kernel='square' 2022-10-06 04:23:34,654 - stpipe.Spec2Pipeline.resample_spec - INFO - using: fillval='INDEF' 2022-10-06 04:23:34,654 - stpipe.Spec2Pipeline.resample_spec - INFO - using: wht_type='ivm' 2022-10-06 04:23:34,654 - stpipe.Spec2Pipeline.resample_spec - INFO - using: pscale_ratio=1.0 2022-10-06 04:23:34,654 - stpipe.Spec2Pipeline.resample_spec - INFO - Reorganizing data from exposure jw00023001001_01101_00001_nrs1_cal.fits 2022-10-06 04:23:35,759 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter kernal: square 2022-10-06 04:23:35,760 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter pixfrac: 1.0 2022-10-06 04:23:35,760 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter fillval: INDEF 2022-10-06 04:23:35,760 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter weight_type: ivm 2022-10-06 04:23:35,940 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2022-10-06 04:23:36,291 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (58, 2048) --> (37, 2048) 2022-10-06 04:23:36,304 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2022-10-06 04:23:36,452 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (58, 2048) --> (37, 2048) 2022-10-06 04:23:36,470 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2022-10-06 04:23:36,618 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (58, 2048) --> (37, 2048) 2022-10-06 04:23:36,636 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2022-10-06 04:23:36,783 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (58, 2048) --> (37, 2048) 2022-10-06 04:23:36,852 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 15.014733755 15.067174011 15.126369462 15.067174011 15.126369462 15.122806399 15.014733755 15.122806399 2022-10-06 04:23:37,324 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter kernal: square 2022-10-06 04:23:37,324 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter pixfrac: 1.0 2022-10-06 04:23:37,324 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter fillval: INDEF 2022-10-06 04:23:37,324 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter weight_type: ivm 2022-10-06 04:23:37,500 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2022-10-06 04:23:37,643 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (57, 1974) --> (37, 1974) 2022-10-06 04:23:37,656 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2022-10-06 04:23:37,803 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (57, 1974) --> (37, 1974) 2022-10-06 04:23:37,821 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2022-10-06 04:23:37,962 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (57, 1974) --> (37, 1974) 2022-10-06 04:23:37,980 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2022-10-06 04:23:38,120 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (57, 1974) --> (37, 1974) 2022-10-06 04:23:38,188 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 15.013996070 15.068004311 15.120836919 15.068004311 15.120836919 15.121307550 15.013996070 15.121307550 2022-10-06 04:23:38,692 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter kernal: square 2022-10-06 04:23:38,692 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter pixfrac: 1.0 2022-10-06 04:23:38,692 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter fillval: INDEF 2022-10-06 04:23:38,692 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter weight_type: ivm 2022-10-06 04:23:38,868 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2022-10-06 04:23:39,028 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (63, 2048) --> (42, 2048) 2022-10-06 04:23:39,043 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2022-10-06 04:23:39,202 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (63, 2048) --> (42, 2048) 2022-10-06 04:23:39,223 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2022-10-06 04:23:39,381 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (63, 2048) --> (42, 2048) 2022-10-06 04:23:39,402 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2022-10-06 04:23:39,560 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (63, 2048) --> (42, 2048) 2022-10-06 04:23:39,639 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 14.907311760 15.019289715 15.123647308 15.019289715 15.123647308 15.123959749 14.907311760 15.123959749 2022-10-06 04:23:40,035 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter kernal: square 2022-10-06 04:23:40,035 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter pixfrac: 1.0 2022-10-06 04:23:40,035 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter fillval: INDEF 2022-10-06 04:23:40,035 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter weight_type: ivm 2022-10-06 04:23:40,503 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2022-10-06 04:23:40,608 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (39, 2048) --> (19, 2048) 2022-10-06 04:23:40,614 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2022-10-06 04:23:40,719 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (39, 2048) --> (19, 2048) 2022-10-06 04:23:40,728 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2022-10-06 04:23:40,832 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (39, 2048) --> (19, 2048) 2022-10-06 04:23:40,841 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2022-10-06 04:23:40,946 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (39, 2048) --> (19, 2048) 2022-10-06 04:23:40,990 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 195.145605674 -88.441302975 195.054077895 -88.441302975 195.054077895 88.121266413 195.145605674 88.121266413 2022-10-06 04:23:41,284 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter kernal: square 2022-10-06 04:23:41,284 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter pixfrac: 1.0 2022-10-06 04:23:41,284 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter fillval: INDEF 2022-10-06 04:23:41,284 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter weight_type: ivm 2022-10-06 04:23:41,441 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2022-10-06 04:23:41,499 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (41, 775) --> (37, 775) 2022-10-06 04:23:41,505 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2022-10-06 04:23:41,560 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (41, 775) --> (37, 775) 2022-10-06 04:23:41,568 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2022-10-06 04:23:41,624 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (41, 775) --> (37, 775) 2022-10-06 04:23:41,631 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2022-10-06 04:23:41,688 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (41, 775) --> (37, 775) 2022-10-06 04:23:41,724 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 15.124303380 15.125527405 15.165084983 15.125527405 15.165084983 15.145707127 15.124303380 15.145707127 2022-10-06 04:23:43,244 - stpipe.Spec2Pipeline.resample_spec - INFO - Saved model in jw00023001001_01101_00001_nrs1_s2d.fits 2022-10-06 04:23:43,244 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec done 2022-10-06 04:23:43,437 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d running with args (<MultiSlitModel from jw00023001001_01101_00001_nrs1_s2d.fits>,). 2022-10-06 04:23:43,438 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None} 2022-10-06 04:23:43,517 - stpipe.Spec2Pipeline.extract_1d - INFO - Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0004.json 2022-10-06 04:23:43,534 - stpipe.Spec2Pipeline.extract_1d - INFO - Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0003.fits 2022-10-06 04:23:43,575 - stpipe.Spec2Pipeline.extract_1d - INFO - Turning on source position correction for exp_type = NRS_FIXEDSLIT 2022-10-06 04:23:43,575 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit S200A1 2022-10-06 04:23:43,575 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2022-10-06 04:23:43,575 - stpipe.Spec2Pipeline.extract_1d - INFO - Can only compute source location for primary NIRSpec slit, 2022-10-06 04:23:43,575 - stpipe.Spec2Pipeline.extract_1d - INFO - so setting use_source_posn to False 2022-10-06 04:23:43,621 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: xstart=0, xstop=2047, ystart=15.0, ystop=21.0 2022-10-06 04:23:43,937 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit S200A2 2022-10-06 04:23:43,938 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2022-10-06 04:23:43,938 - stpipe.Spec2Pipeline.extract_1d - INFO - Can only compute source location for primary NIRSpec slit, 2022-10-06 04:23:43,938 - stpipe.Spec2Pipeline.extract_1d - INFO - so setting use_source_posn to False 2022-10-06 04:23:43,979 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: xstart=0, xstop=1973, ystart=15.0, ystop=21.0 2022-10-06 04:23:44,291 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit S400A1 2022-10-06 04:23:44,359 - stpipe.Spec2Pipeline.extract_1d - INFO - Applying position offset of 1.47 to ystart and ystop 2022-10-06 04:23:44,360 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: xstart=0, xstop=2047, ystart=18.973807882685414, ystop=24.973807882685414 2022-10-06 04:23:44,677 - stpipe.Spec2Pipeline.extract_1d - INFO - Applying Aperture correction. 2022-10-06 04:23:47,783 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit S1600A1 2022-10-06 04:23:47,784 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2022-10-06 04:23:47,784 - stpipe.Spec2Pipeline.extract_1d - INFO - Can only compute source location for primary NIRSpec slit, 2022-10-06 04:23:47,784 - stpipe.Spec2Pipeline.extract_1d - INFO - so setting use_source_posn to False 2022-10-06 04:23:47,811 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: xstart=0, xstop=2047, ystart=6.0, ystop=12.0 2022-10-06 04:23:48,124 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit S200B1 2022-10-06 04:23:48,125 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2022-10-06 04:23:48,125 - stpipe.Spec2Pipeline.extract_1d - INFO - Can only compute source location for primary NIRSpec slit, 2022-10-06 04:23:48,125 - stpipe.Spec2Pipeline.extract_1d - INFO - so setting use_source_posn to False 2022-10-06 04:23:48,144 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: xstart=0, xstop=774, ystart=15.0, ystop=21.0 2022-10-06 04:23:48,488 - stpipe.Spec2Pipeline.extract_1d - INFO - Saved model in jw00023001001_01101_00001_nrs1_x1d.fits 2022-10-06 04:23:48,488 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d done 2022-10-06 04:23:48,489 - stpipe.Spec2Pipeline - INFO - Finished processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw00023001001_01101_00001_nrs1 2022-10-06 04:23:48,489 - stpipe.Spec2Pipeline - INFO - Ending calwebb_spec2 2022-10-06 04:23:48,489 - stpipe.Spec2Pipeline - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:23:49,999 - stpipe.Spec2Pipeline - INFO - Saved model in jw00023001001_01101_00001_nrs1_cal.fits 2022-10-06 04:23:49,999 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline done -------------------------------Captured log setup------------------------------- INFO stpipe.Spec2Pipeline:step.py:366 Spec2Pipeline instance created. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:366 BackgroundStep instance created. INFO stpipe.Spec2Pipeline.assign_wcs:step.py:366 AssignWcsStep instance created. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:366 ImprintStep instance created. INFO stpipe.Spec2Pipeline.msa_flagging:step.py:366 MSAFlagOpenStep instance created. INFO stpipe.Spec2Pipeline.extract_2d:step.py:366 Extract2dStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos:step.py:366 MasterBackgroundMosStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:step.py:366 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:step.py:366 PathLossStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:step.py:366 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.photom:step.py:366 PhotomStep instance created. INFO stpipe.Spec2Pipeline.wavecorr:step.py:366 WavecorrStep instance created. INFO stpipe.Spec2Pipeline.flat_field:step.py:366 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.srctype:step.py:366 SourceTypeStep instance created. INFO stpipe.Spec2Pipeline.straylight:step.py:366 StraylightStep instance created. INFO stpipe.Spec2Pipeline.fringe:step.py:366 FringeStep instance created. INFO stpipe.Spec2Pipeline.pathloss:step.py:366 PathLossStep instance created. INFO stpipe.Spec2Pipeline.barshadow:step.py:366 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.wfss_contam:step.py:366 WfssContamStep instance created. INFO stpipe.Spec2Pipeline.photom:step.py:366 PhotomStep instance created. INFO stpipe.Spec2Pipeline.resample_spec:step.py:366 ResampleSpecStep instance created. INFO stpipe.Spec2Pipeline.cube_build:step.py:366 CubeBuildStep instance created. INFO stpipe.Spec2Pipeline.extract_1d:step.py:366 Extract1dStep instance created. INFO stpipe.Spec2Pipeline:step.py:430 Step Spec2Pipeline running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw00023001001_01101_00001_nrs1_rate.fits',). INFO stpipe.Spec2Pipeline:step.py:434 Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_bsub': False, 'fail_on_exception': True, 'save_wfss_esec': False, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000}, 'master_background_mos': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'source_type': None}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'wfss_contam': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_simulated_image': False, 'save_contam_images': False, 'maximum_cores': 'none'}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'drizzle', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None}}} INFO stpipe.Spec2Pipeline:pipeline.py:358 Prefetching reference files for dataset: 'jw00023001001_01101_00001_nrs1_rate.fits' reftypes = ['apcorr', 'area', 'barshadow', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'mrsxartcorr', 'msa', 'msaoper', 'ote', 'pathloss', 'photom', 'regions', 'sflat', 'speckernel', 'specprofile', 'spectrace', 'specwcs', 'wavecorr', 'wavelengthrange', 'wavemap', 'wfssbkg'] INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0003.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0021.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for BARSHADOW reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for CUBEPAR reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0033.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DISTORTION reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DRIZPARS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0004.json'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0006.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FILTEROFFSET reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FLAT reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0026.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FRINGE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for IFUFORE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for IFUPOST reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for IFUSLICER reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for MRSXARTCORR reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0001.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0014.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for REGIONS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0029.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECKERNEL reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECPROFILE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECTRACE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECWCS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0003.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WAVEMAP reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WFSSBKG reference file is 'N/A'. INFO stpipe.Spec2Pipeline:calwebb_spec2.py:92 Starting calwebb_spec2 ... INFO stpipe.Spec2Pipeline:calwebb_spec2.py:110 Processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw00023001001_01101_00001_nrs1 INFO stpipe.Spec2Pipeline:calwebb_spec2.py:176 Working on input /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw00023001001_01101_00001_nrs1_rate.fits ... DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:347 Science data does not allow direct background subtraction. Skipping "bkg_subtract". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:359 Science data does not allow imprint processing. Skipping "imprint_subtraction". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:365 Science data does not allow MSA flagging. Skipping "msa_flagging". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:370 Science data does not allow stray light correction. Skipping "straylight". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:375 Science data does not allow fringe correction. Skipping "fringe". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:386 Science data does not allow barshadow correction. Skipping "barshadow". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:391 Science data does not allow master background correction. Skipping "master_background_mos". INFO stpipe.Spec2Pipeline.assign_wcs:step.py:430 Step assign_wcs running with args (<ImageModel(2048, 2048) from jw00023001001_01101_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.assign_wcs:step.py:434 Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:80 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0033.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0026.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:80 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0033.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0026.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1375 gwa_ytilt is 0.02 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1375 gwa_ytilt is 0.02 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1376 gwa_xtilt is 0.01 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1376 gwa_xtilt is 0.01 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1380 theta_y correction: 0.44965731468948844 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1380 theta_y correction: 0.44965731468948844 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:424 Slits projected on detector NRS1: ['S200A1', 'S200A2', 'S400A1', 'S1600A1', 'S200B1'] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:424 Slits projected on detector NRS1: ['S200A1', 'S200A2', 'S400A1', 'S1600A1', 'S200B1'] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:308 Computing WCS for 5 open slitlets INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:308 Computing WCS for 5 open slitlets INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1375 gwa_ytilt is 0.02 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1375 gwa_ytilt is 0.02 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1376 gwa_xtilt is 0.01 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1376 gwa_xtilt is 0.01 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1380 theta_y correction: 0.44965731468948844 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1380 theta_y correction: 0.44965731468948844 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:330 SPORDER= -1, wrange=[7e-07, 1.27e-06] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:330 SPORDER= -1, wrange=[7e-07, 1.27e-06] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 5 open slits in quadrant 5 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 5 open slits in quadrant 5 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:62 Created a NIRSPEC nrs_fixedslit pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0033.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0026.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:62 Created a NIRSPEC nrs_fixedslit pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0033.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0026.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} INFO stpipe.Spec2Pipeline.assign_wcs:assign_wcs.py:96 COMPLETED assign_wcs INFO stpipe.Spec2Pipeline.assign_wcs:assign_wcs.py:96 COMPLETED assign_wcs INFO stpipe.Spec2Pipeline.assign_wcs:step.py:1016 Saved model in jw00023001001_01101_00001_nrs1_assign_wcs.fits INFO stpipe.Spec2Pipeline.assign_wcs:step.py:546 Step assign_wcs done INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:430 Step bkg_subtract running with args (<ImageModel(2048, 2048) from jw00023001001_01101_00001_nrs1_assign_wcs.fits>, []). INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:434 Step bkg_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None} INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:546 Step bkg_subtract done INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:430 Step imprint_subtract running with args (<ImageModel(2048, 2048) from jw00023001001_01101_00001_nrs1_assign_wcs.fits>, []). INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:434 Step imprint_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'} INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:546 Step imprint_subtract done INFO stpipe.Spec2Pipeline.msa_flagging:step.py:430 Step msa_flagging running with args (<ImageModel(2048, 2048) from jw00023001001_01101_00001_nrs1_assign_wcs.fits>,). INFO stpipe.Spec2Pipeline.msa_flagging:step.py:434 Step msa_flagging parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'} INFO stpipe.Spec2Pipeline.msa_flagging:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.msa_flagging:step.py:546 Step msa_flagging done INFO stpipe.Spec2Pipeline.extract_2d:step.py:430 Step extract_2d running with args (<ImageModel(2048, 2048) from jw00023001001_01101_00001_nrs1_assign_wcs.fits>,). INFO stpipe.Spec2Pipeline.extract_2d:step.py:434 Step extract_2d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000} INFO stpipe.Spec2Pipeline.extract_2d:extract_2d.py:61 EXP_TYPE is NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.extract_2d:extract_2d.py:61 EXP_TYPE is NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S200A1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S200A1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 0 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 0 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1058 1116 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1058 1116 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 15.126398753 15.121897628 15.125938751 15.122803468 15.125885327 15.122777650 15.126345318 15.121871801 INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 15.126398753 15.121897628 15.125938751 15.122803468 15.125885327 15.122777650 15.126345318 15.121871801 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 15.126398753 15.121897628 15.125938751 15.122803468 15.125885327 15.122777650 15.126345318 15.121871801 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 15.126398753 15.121897628 15.125938751 15.122803468 15.125885327 15.122777650 15.126345318 15.121871801 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S200A2 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S200A2 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 0 1974 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 0 1974 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1021 1078 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1021 1078 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 15.120865130 15.120399965 15.120407962 15.121303054 15.120354955 15.121277371 15.120812112 15.120374275 INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 15.120865130 15.120399965 15.120407962 15.121303054 15.120354955 15.121277371 15.120812112 15.120374275 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 15.120865130 15.120399965 15.120407962 15.121303054 15.120354955 15.121277371 15.120812112 15.120374275 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 15.120865130 15.120399965 15.120407962 15.121303054 15.120354955 15.121277371 15.120812112 15.120374275 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S400A1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S400A1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 0 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 0 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 981 1044 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 981 1044 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 15.123701334 15.122935633 15.123177717 15.123967699 15.123073180 15.123917142 15.123596771 15.122885057 INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 15.123701334 15.122935633 15.123177717 15.123967699 15.123073180 15.123917142 15.123596771 15.122885057 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 15.123701334 15.122935633 15.123177717 15.123967699 15.123073180 15.123917142 15.123596771 15.122885057 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 15.123701334 15.122935633 15.123177717 15.123967699 15.123073180 15.123917142 15.123596771 15.122885057 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S1600A1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S1600A1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 0 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 0 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 962 1001 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 962 1001 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 15.123945145 15.124446650 15.123721208 15.124887775 15.123306821 15.124687442 15.123530715 15.124246288 INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 15.123945145 15.124446650 15.123721208 15.124887775 15.123306821 15.124687442 15.123530715 15.124246288 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 15.123945145 15.124446650 15.123721208 15.124887775 15.123306821 15.124687442 15.123530715 15.124246288 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 15.123945145 15.124446650 15.123721208 15.124887775 15.123306821 15.124687442 15.123530715 15.124246288 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S200B1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S200B1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1273 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1273 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 923 964 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 923 964 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 15.165114571 15.144804371 15.164646023 15.145703307 15.164593736 15.145678580 15.165062271 15.144779641 INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 15.165114571 15.144804371 15.164646023 15.145703307 15.164593736 15.145678580 15.165062271 15.144779641 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 15.165114571 15.144804371 15.164646023 15.145703307 15.164593736 15.145678580 15.165062271 15.144779641 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 15.165114571 15.144804371 15.164646023 15.145703307 15.164593736 15.145678580 15.165062271 15.144779641 INFO stpipe.Spec2Pipeline.extract_2d:step.py:1016 Saved model in jw00023001001_01101_00001_nrs1_extract_2d.fits INFO stpipe.Spec2Pipeline.extract_2d:step.py:546 Step extract_2d done INFO stpipe.Spec2Pipeline.srctype:step.py:430 Step srctype running with args (<MultiSlitModel from jw00023001001_01101_00001_nrs1_extract_2d.fits>,). INFO stpipe.Spec2Pipeline.srctype:step.py:434 Step srctype parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'source_type': None} INFO stpipe.Spec2Pipeline.srctype:srctype.py:39 Input EXP_TYPE is NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.srctype:srctype.py:39 Input EXP_TYPE is NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.srctype:srctype.py:62 Input SRCTYAPT = None INFO stpipe.Spec2Pipeline.srctype:srctype.py:62 Input SRCTYAPT = None WARNING stpipe.Spec2Pipeline.srctype:srctype.py:64 SRCTYAPT keyword not found in input; using SRCTYPE instead WARNING stpipe.Spec2Pipeline.srctype:srctype.py:64 SRCTYAPT keyword not found in input; using SRCTYPE instead INFO stpipe.Spec2Pipeline.srctype:srctype.py:119 Input source type is unknown; setting default SRCTYPE = POINT INFO stpipe.Spec2Pipeline.srctype:srctype.py:119 Input source type is unknown; setting default SRCTYPE = POINT DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:137 primary_slit = S400A1 DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:137 primary_slit = S400A1 DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:143 slit S200A1 = EXTENDED DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:143 slit S200A1 = EXTENDED DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:143 slit S200A2 = EXTENDED DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:143 slit S200A2 = EXTENDED DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:143 slit S400A1 = POINT DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:143 slit S400A1 = POINT DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:143 slit S1600A1 = EXTENDED DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:143 slit S1600A1 = EXTENDED DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:143 slit S200B1 = EXTENDED DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:143 slit S200B1 = EXTENDED INFO stpipe.Spec2Pipeline.srctype:step.py:1016 Saved model in jw00023001001_01101_00001_nrs1_srctype.fits INFO stpipe.Spec2Pipeline.srctype:step.py:546 Step srctype done INFO stpipe.Spec2Pipeline.master_background_mos:step.py:430 Step master_background_mos running with args (<MultiSlitModel from jw00023001001_01101_00001_nrs1_srctype.fits>,). INFO stpipe.Spec2Pipeline.master_background_mos:step.py:434 Step master_background_mos parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}}} INFO stpipe.Spec2Pipeline.master_background_mos:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.master_background_mos:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Spec2Pipeline.master_background_mos:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Spec2Pipeline.master_background_mos:step.py:546 Step master_background_mos done INFO stpipe.Spec2Pipeline.wavecorr:step.py:430 Step wavecorr running with args (<MultiSlitModel from jw00023001001_01101_00001_nrs1_srctype.fits>,). INFO stpipe.Spec2Pipeline.wavecorr:step.py:434 Step wavecorr parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'} INFO stpipe.Spec2Pipeline.wavecorr:wavecorr_step.py:56 Using WAVECORR reference file /grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0003.asdf INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:244 Detected a POINT source type in slit S400A1 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:244 Detected a POINT source type in slit S400A1 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:116 slit name S400A1 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:116 slit name S400A1 DEBUG stpipe.Spec2Pipeline.wavecorr:wavecorr.py:281 wcsinfo: 321.87, -477.94, 138.78, -1 DEBUG stpipe.Spec2Pipeline.wavecorr:wavecorr.py:281 wcsinfo: 321.87, -477.94, 138.78, -1 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:284 xoffset, yoffset, 0.0, 0.0 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:284 xoffset, yoffset, 0.0, 0.0 DEBUG stpipe.Spec2Pipeline.wavecorr:wavecorr.py:292 Source X/Y position in V2V3: 321.87, -477.94 DEBUG stpipe.Spec2Pipeline.wavecorr:wavecorr.py:292 Source X/Y position in V2V3: 321.87, -477.94 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:293 Source X/Y position in the slit: 0.004938526981283373, -0.02795306204991911 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:293 Source X/Y position in the slit: 0.004938526981283373, -0.02795306204991911 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:170 Using wavelength zero-point correction for aperture S400A1 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:170 Using wavelength zero-point correction for aperture S400A1 INFO stpipe.Spec2Pipeline.wavecorr:step.py:1016 Saved model in jw00023001001_01101_00001_nrs1_wavecorr.fits INFO stpipe.Spec2Pipeline.wavecorr:step.py:546 Step wavecorr done INFO stpipe.Spec2Pipeline.flat_field:step.py:430 Step flat_field running with args (<MultiSlitModel from jw00023001001_01101_00001_nrs1_wavecorr.fits>,). INFO stpipe.Spec2Pipeline.flat_field:step.py:434 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:74 Input is MultiSlitModel of exposure type NRS_FIXEDSLIT DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:201 No reference found for type FLAT DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:199 Using FFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_fflat_0006.fits DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:199 Using SFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_sflat_0029.fits DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:199 Using DFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit S200A1 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit S200A1 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 48122 out of 118784 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 48122 out of 118784 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1221 The table wavelength or flat-field data array contained 2541 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1221 The table wavelength or flat-field data array contained 2541 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 5 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 5 flat-field values <= 0 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit S200A2 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit S200A2 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 44632 out of 112518 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 44632 out of 112518 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1221 The table wavelength or flat-field data array contained 3585 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1221 The table wavelength or flat-field data array contained 3585 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 4 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 4 flat-field values <= 0 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit S400A1 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit S400A1 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:1943 Creating wavelength array from WCS for slit S400A1 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:1943 Creating wavelength array from WCS for slit S400A1 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 48487 out of 129024 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 48487 out of 129024 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1221 The table wavelength or flat-field data array contained 2935 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1221 The table wavelength or flat-field data array contained 2935 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 5 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 5 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 48506 out of 129024 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 48506 out of 129024 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1221 The table wavelength or flat-field data array contained 2935 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1221 The table wavelength or flat-field data array contained 2935 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 5 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 5 flat-field values <= 0 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit S1600A1 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit S1600A1 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 45486 out of 79872 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 45486 out of 79872 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1221 The table wavelength or flat-field data array contained 2817 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1221 The table wavelength or flat-field data array contained 2817 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 2 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 2 flat-field values <= 0 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit S200B1 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit S200B1 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 5086 out of 31775 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 5086 out of 31775 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1221 The table wavelength or flat-field data array contained 7471 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1221 The table wavelength or flat-field data array contained 7471 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 2 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 2 flat-field values <= 0 INFO stpipe.Spec2Pipeline.flat_field:step.py:1016 Saved model in jw00023001001_01101_00001_nrs1_flat_field.fits INFO stpipe.Spec2Pipeline.flat_field:step.py:546 Step flat_field done INFO stpipe.Spec2Pipeline.pathloss:step.py:430 Step pathloss running with args (<MultiSlitModel from jw00023001001_01101_00001_nrs1_flat_field.fits>,). INFO stpipe.Spec2Pipeline.pathloss:step.py:434 Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None} INFO stpipe.Spec2Pipeline.pathloss:pathloss_step.py:38 Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0001.fits INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:232 Input exposure type is NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:232 Input exposure type is NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:458 Working on slit S200A1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:458 Working on slit S200A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200A1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:799 Using aperture S200A1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:799 Using aperture S200A1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:458 Working on slit S200A2 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:458 Working on slit S200A2 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200A2 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200A2 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:799 Using aperture S200A2 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:799 Using aperture S200A2 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:458 Working on slit S400A1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:458 Working on slit S400A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200A2 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200A2 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200B1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200B1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S1600A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S1600A1 WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:847 Cannot find matching pathloss model for S400A1 WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:847 Cannot find matching pathloss model for S400A1 WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:848 Skipping pathloss correction for this slit WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:848 Skipping pathloss correction for this slit WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:468 No correction provided for slit 2. Skipping WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:468 No correction provided for slit 2. Skipping INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:458 Working on slit S1600A1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:458 Working on slit S1600A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200A2 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200A2 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200B1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200B1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S1600A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S1600A1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:799 Using aperture S1600A1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:799 Using aperture S1600A1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:458 Working on slit S200B1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:458 Working on slit S200B1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200A2 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200A2 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200B1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200B1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:799 Using aperture S200B1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:799 Using aperture S200B1 INFO stpipe.Spec2Pipeline.pathloss:step.py:1016 Saved model in jw00023001001_01101_00001_nrs1_pathloss.fits INFO stpipe.Spec2Pipeline.pathloss:step.py:546 Step pathloss done INFO stpipe.Spec2Pipeline.barshadow:step.py:430 Step barshadow running with args (<MultiSlitModel from jw00023001001_01101_00001_nrs1_pathloss.fits>,). INFO stpipe.Spec2Pipeline.barshadow:step.py:434 Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None} INFO stpipe.Spec2Pipeline.barshadow:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.barshadow:step.py:546 Step barshadow done INFO stpipe.Spec2Pipeline.photom:step.py:430 Step photom running with args (<MultiSlitModel from jw00023001001_01101_00001_nrs1_pathloss.fits>,). INFO stpipe.Spec2Pipeline.photom:step.py:434 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None} DEBUG stpipe.Spec2Pipeline.photom:photom_step.py:35 Input is MultiSlitModel INFO stpipe.Spec2Pipeline.photom:photom_step.py:55 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0014.fits INFO stpipe.Spec2Pipeline.photom:photom_step.py:56 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0021.fits INFO stpipe.Spec2Pipeline.photom:photom.py:144 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.photom:photom.py:144 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.photom:photom.py:145 detector: NRS1 INFO stpipe.Spec2Pipeline.photom:photom.py:145 detector: NRS1 INFO stpipe.Spec2Pipeline.photom:photom.py:146 exp_type: NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.photom:photom.py:146 exp_type: NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.photom:photom.py:148 filter: F070LP INFO stpipe.Spec2Pipeline.photom:photom.py:148 filter: F070LP INFO stpipe.Spec2Pipeline.photom:photom.py:152 grating: G140H INFO stpipe.Spec2Pipeline.photom:photom.py:152 grating: G140H INFO stpipe.Spec2Pipeline.photom:photom.py:216 Working on slit S200A1 INFO stpipe.Spec2Pipeline.photom:photom.py:216 Working on slit S200A1 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:216 Working on slit S200A2 INFO stpipe.Spec2Pipeline.photom:photom.py:216 Working on slit S200A2 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:216 Working on slit S400A1 INFO stpipe.Spec2Pipeline.photom:photom.py:216 Working on slit S400A1 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:216 Working on slit S1600A1 INFO stpipe.Spec2Pipeline.photom:photom.py:216 Working on slit S1600A1 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:216 Working on slit S200B1 INFO stpipe.Spec2Pipeline.photom:photom.py:216 Working on slit S200B1 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:step.py:546 Step photom done INFO stpipe.Spec2Pipeline.resample_spec:step.py:430 Step resample_spec running with args (<MultiSlitModel from jw00023001001_01101_00001_nrs1_cal.fits>,). INFO stpipe.Spec2Pipeline.resample_spec:step.py:434 Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True} INFO stpipe.Spec2Pipeline.resample_spec:resample_spec_step.py:60 No DRIZPARS reffile INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: pixfrac=1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: pixfrac=1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: kernel='square' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: kernel='square' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: fillval='INDEF' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: fillval='INDEF' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: wht_type='ivm' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: wht_type='ivm' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: pscale_ratio=1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: pscale_ratio=1.0 INFO stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:37 Reorganizing data from exposure jw00023001001_01101_00001_nrs1_cal.fits INFO stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:37 Reorganizing data from exposure jw00023001001_01101_00001_nrs1_cal.fits DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 1 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 1 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 2 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 2 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 3 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 3 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 4 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 4 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 5 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 5 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 57.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 57.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (58, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (58, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (58, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (58, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (37, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (37, 2048) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (58, 2048) --> (37, 2048) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (58, 2048) --> (37, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 57.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 57.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (58, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (58, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (58, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (58, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (37, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (37, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (58, 2048) --> (37, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (58, 2048) --> (37, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 57.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 57.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (58, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (58, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (58, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (58, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (37, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (37, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (58, 2048) --> (37, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (58, 2048) --> (37, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 57.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 57.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (58, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (58, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (58, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (58, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (37, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (37, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (58, 2048) --> (37, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (58, 2048) --> (37, 2048) INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 15.014733755 15.067174011 15.126369462 15.067174011 15.126369462 15.122806399 15.014733755 15.122806399 INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 15.014733755 15.067174011 15.126369462 15.067174011 15.126369462 15.122806399 15.014733755 15.122806399 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1973.5), (-0.5, 56.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1973.5), (-0.5, 56.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (57, 1974) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (57, 1974) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (57, 1974) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (57, 1974) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (37, 1974) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (37, 1974) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (57, 1974) --> (37, 1974) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (57, 1974) --> (37, 1974) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1973.5), (-0.5, 56.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1973.5), (-0.5, 56.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (57, 1974) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (57, 1974) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (57, 1974) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (57, 1974) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (37, 1974) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (37, 1974) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (57, 1974) --> (37, 1974) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (57, 1974) --> (37, 1974) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1973.5), (-0.5, 56.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1973.5), (-0.5, 56.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (57, 1974) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (57, 1974) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (57, 1974) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (57, 1974) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (37, 1974) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (37, 1974) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (57, 1974) --> (37, 1974) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (57, 1974) --> (37, 1974) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1973.5), (-0.5, 56.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1973.5), (-0.5, 56.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (57, 1974) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (57, 1974) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (57, 1974) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (57, 1974) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (37, 1974) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (37, 1974) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (57, 1974) --> (37, 1974) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (57, 1974) --> (37, 1974) INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 15.013996070 15.068004311 15.120836919 15.068004311 15.120836919 15.121307550 15.013996070 15.121307550 INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 15.013996070 15.068004311 15.120836919 15.068004311 15.120836919 15.121307550 15.013996070 15.121307550 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 62.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 62.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (63, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (63, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (63, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (63, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (42, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (42, 2048) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (63, 2048) --> (42, 2048) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (63, 2048) --> (42, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 62.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 62.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (63, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (63, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (63, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (63, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (63, 2048) --> (42, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (63, 2048) --> (42, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 62.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 62.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (63, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (63, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (63, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (63, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (63, 2048) --> (42, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (63, 2048) --> (42, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 62.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 62.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (63, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (63, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (63, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (63, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (63, 2048) --> (42, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (63, 2048) --> (42, 2048) INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 14.907311760 15.019289715 15.123647308 15.019289715 15.123647308 15.123959749 14.907311760 15.123959749 INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 14.907311760 15.019289715 15.123647308 15.019289715 15.123647308 15.123959749 14.907311760 15.123959749 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 38.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 38.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (39, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (39, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (39, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (39, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (19, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (19, 2048) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (39, 2048) --> (19, 2048) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (39, 2048) --> (19, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 38.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 38.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (39, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (39, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (39, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (39, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (19, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (19, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (39, 2048) --> (19, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (39, 2048) --> (19, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 38.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 38.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (39, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (39, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (39, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (39, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (19, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (19, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (39, 2048) --> (19, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (39, 2048) --> (19, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 38.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 38.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (39, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (39, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (39, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (39, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (19, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (19, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (39, 2048) --> (19, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (39, 2048) --> (19, 2048) INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 195.145605674 -88.441302975 195.054077895 -88.441302975 195.054077895 88.121266413 195.145605674 88.121266413 INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 195.145605674 -88.441302975 195.054077895 -88.441302975 195.054077895 88.121266413 195.145605674 88.121266413 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 774.5), (-0.5, 40.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 774.5), (-0.5, 40.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (41, 775) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (41, 775) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (41, 775) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (41, 775) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (37, 775) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (37, 775) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (41, 775) --> (37, 775) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (41, 775) --> (37, 775) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 774.5), (-0.5, 40.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 774.5), (-0.5, 40.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (41, 775) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (41, 775) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (41, 775) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (41, 775) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (37, 775) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (37, 775) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (41, 775) --> (37, 775) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (41, 775) --> (37, 775) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 774.5), (-0.5, 40.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 774.5), (-0.5, 40.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (41, 775) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (41, 775) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (41, 775) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (41, 775) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (37, 775) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (37, 775) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (41, 775) --> (37, 775) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (41, 775) --> (37, 775) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 774.5), (-0.5, 40.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 774.5), (-0.5, 40.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (41, 775) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (41, 775) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (41, 775) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (41, 775) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (37, 775) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (37, 775) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (41, 775) --> (37, 775) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (41, 775) --> (37, 775) INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 15.124303380 15.125527405 15.165084983 15.125527405 15.165084983 15.145707127 15.124303380 15.145707127 INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 15.124303380 15.125527405 15.165084983 15.125527405 15.165084983 15.145707127 15.124303380 15.145707127 INFO stpipe.Spec2Pipeline.resample_spec:step.py:1016 Saved model in jw00023001001_01101_00001_nrs1_s2d.fits INFO stpipe.Spec2Pipeline.resample_spec:step.py:546 Step resample_spec done INFO stpipe.Spec2Pipeline.extract_1d:step.py:430 Step extract_1d running with args (<MultiSlitModel from jw00023001001_01101_00001_nrs1_s2d.fits>,). INFO stpipe.Spec2Pipeline.extract_1d:step.py:434 Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None} DEBUG stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:159 Input is a MultiSlitModel INFO stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:389 Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0004.json INFO stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:397 Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0003.fits INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2780 Turning on source position correction for exp_type = NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2780 Turning on source position correction for exp_type = NRS_FIXEDSLIT DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2805 Input is a MultiSlitModel. DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2805 Input is a MultiSlitModel. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit S200A1 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit S200A1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3620 Can only compute source location for primary NIRSpec slit, INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3620 Can only compute source location for primary NIRSpec slit, INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3621 so setting use_source_posn to False INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3621 so setting use_source_posn to False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[14.5], [21.5]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[14.5], [21.5]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=2047, ystart=15.0, ystop=21.0 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=2047, ystart=15.0, ystop=21.0 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit S200A2 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit S200A2 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3620 Can only compute source location for primary NIRSpec slit, INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3620 Can only compute source location for primary NIRSpec slit, INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3621 so setting use_source_posn to False INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3621 so setting use_source_posn to False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[14.5], [21.5]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[14.5], [21.5]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1973, ystart=15.0, ystop=21.0 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1973, ystart=15.0, ystop=21.0 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit S400A1 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit S400A1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = True DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = True DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1301 Spectrum location from WCS used column/row 1023 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1301 Spectrum location from WCS used column/row 1023 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1311 Target spectrum is at 21.97 in the cross-dispersion direction DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1311 Target spectrum is at 21.97 in the cross-dispersion direction DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1314 and the nominal XD location of the spectrum is 20.50 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1314 and the nominal XD location of the spectrum is 20.50 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:3400 Computed source offset=1.47, source location=21.97 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:3400 Computed source offset=1.47, source location=21.97 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:1608 Applying position offset of 1.47 to ystart and ystop INFO stpipe.Spec2Pipeline.extract_1d:extract.py:1608 Applying position offset of 1.47 to ystart and ystop DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 1.4738078826854135 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 1.4738078826854135 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[18.473807882685414], [25.473807882685414]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[18.473807882685414], [25.473807882685414]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=2047, ystart=18.973807882685414, ystop=24.973807882685414 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=2047, ystart=18.973807882685414, ystop=24.973807882685414 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3770 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3770 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit S1600A1 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit S1600A1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3620 Can only compute source location for primary NIRSpec slit, INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3620 Can only compute source location for primary NIRSpec slit, INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3621 so setting use_source_posn to False INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3621 so setting use_source_posn to False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[5.5], [12.5]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[5.5], [12.5]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=2047, ystart=6.0, ystop=12.0 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=2047, ystart=6.0, ystop=12.0 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit S200B1 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit S200B1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3620 Can only compute source location for primary NIRSpec slit, INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3620 Can only compute source location for primary NIRSpec slit, INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3621 so setting use_source_posn to False INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3621 so setting use_source_posn to False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[14.5], [21.5]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[14.5], [21.5]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=774, ystart=15.0, ystop=21.0 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=774, ystart=15.0, ystop=21.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2952 Not copying from the INT_TIMES table because this is not a TSO exposure. DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2952 Not copying from the INT_TIMES table because this is not a TSO exposure. INFO stpipe.Spec2Pipeline.extract_1d:step.py:1016 Saved model in jw00023001001_01101_00001_nrs1_x1d.fits INFO stpipe.Spec2Pipeline.extract_1d:step.py:546 Step extract_1d done INFO stpipe.Spec2Pipeline:calwebb_spec2.py:314 Finished processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw00023001001_01101_00001_nrs1 INFO stpipe.Spec2Pipeline:calwebb_spec2.py:138 Ending calwebb_spec2 INFO stpipe.Spec2Pipeline:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Spec2Pipeline:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Spec2Pipeline:step.py:1016 Saved model in jw00023001001_01101_00001_nrs1_cal.fits INFO stpipe.Spec2Pipeline:step.py:546 Step Spec2Pipeline done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[fullframe-extract_2d] | 0.45 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[fullframe-wavecorr] | 0.55 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[fullframe-flat_field] | 0.53 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[fullframe-pathloss] | 0.88 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[fullframe-srctype] | 0.50 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[fullframe-cal] | 0.60 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[fullframe-x1d] | 0.29 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[S400A1-subarray-assign_wcs] | 52.92 | |
|
-----------------------------Captured stderr setup------------------------------ 2022-10-06 04:23:56,184 - stpipe.Spec2Pipeline - INFO - Spec2Pipeline instance created. 2022-10-06 04:23:56,185 - stpipe.Spec2Pipeline.bkg_subtract - INFO - BackgroundStep instance created. 2022-10-06 04:23:56,186 - stpipe.Spec2Pipeline.assign_wcs - INFO - AssignWcsStep instance created. 2022-10-06 04:23:56,187 - stpipe.Spec2Pipeline.imprint_subtract - INFO - ImprintStep instance created. 2022-10-06 04:23:56,187 - stpipe.Spec2Pipeline.msa_flagging - INFO - MSAFlagOpenStep instance created. 2022-10-06 04:23:56,188 - stpipe.Spec2Pipeline.extract_2d - INFO - Extract2dStep instance created. 2022-10-06 04:23:56,191 - stpipe.Spec2Pipeline.master_background_mos - INFO - MasterBackgroundMosStep instance created. 2022-10-06 04:23:56,191 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - FlatFieldStep instance created. 2022-10-06 04:23:56,192 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - PathLossStep instance created. 2022-10-06 04:23:56,193 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - BarShadowStep instance created. 2022-10-06 04:23:56,193 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - PhotomStep instance created. 2022-10-06 04:23:56,194 - stpipe.Spec2Pipeline.wavecorr - INFO - WavecorrStep instance created. 2022-10-06 04:23:56,195 - stpipe.Spec2Pipeline.flat_field - INFO - FlatFieldStep instance created. 2022-10-06 04:23:56,196 - stpipe.Spec2Pipeline.srctype - INFO - SourceTypeStep instance created. 2022-10-06 04:23:56,196 - stpipe.Spec2Pipeline.straylight - INFO - StraylightStep instance created. 2022-10-06 04:23:56,197 - stpipe.Spec2Pipeline.fringe - INFO - FringeStep instance created. 2022-10-06 04:23:56,198 - stpipe.Spec2Pipeline.pathloss - INFO - PathLossStep instance created. 2022-10-06 04:23:56,198 - stpipe.Spec2Pipeline.barshadow - INFO - BarShadowStep instance created. 2022-10-06 04:23:56,199 - stpipe.Spec2Pipeline.wfss_contam - INFO - WfssContamStep instance created. 2022-10-06 04:23:56,200 - stpipe.Spec2Pipeline.photom - INFO - PhotomStep instance created. 2022-10-06 04:23:56,201 - stpipe.Spec2Pipeline.resample_spec - INFO - ResampleSpecStep instance created. 2022-10-06 04:23:56,202 - stpipe.Spec2Pipeline.cube_build - INFO - CubeBuildStep instance created. 2022-10-06 04:23:56,203 - stpipe.Spec2Pipeline.extract_1d - INFO - Extract1dStep instance created. 2022-10-06 04:23:56,420 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw93045010001_02101_00001_nrs2_rate.fits',). 2022-10-06 04:23:56,432 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_bsub': False, 'fail_on_exception': True, 'save_wfss_esec': False, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000}, 'master_background_mos': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'source_type': None}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'wfss_contam': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_simulated_image': False, 'save_contam_images': False, 'maximum_cores': 'none'}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'drizzle', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None}}} 2022-10-06 04:23:56,605 - stpipe.Spec2Pipeline - INFO - Prefetching reference files for dataset: 'jw93045010001_02101_00001_nrs2_rate.fits' reftypes = ['apcorr', 'area', 'barshadow', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'mrsxartcorr', 'msa', 'msaoper', 'ote', 'pathloss', 'photom', 'regions', 'sflat', 'speckernel', 'specprofile', 'spectrace', 'specwcs', 'wavecorr', 'wavelengthrange', 'wavemap', 'wfssbkg'] 2022-10-06 04:23:56,625 - stpipe.Spec2Pipeline - INFO - Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0003.fits'. 2022-10-06 04:23:56,626 - stpipe.Spec2Pipeline - INFO - Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0027.fits'. 2022-10-06 04:23:56,627 - stpipe.Spec2Pipeline - INFO - Prefetch for BARSHADOW reference file is 'N/A'. 2022-10-06 04:23:56,627 - stpipe.Spec2Pipeline - INFO - Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. 2022-10-06 04:23:56,629 - stpipe.Spec2Pipeline - INFO - Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. 2022-10-06 04:23:56,631 - stpipe.Spec2Pipeline - INFO - Prefetch for CUBEPAR reference file is 'N/A'. 2022-10-06 04:23:56,631 - stpipe.Spec2Pipeline - INFO - Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0002.fits'. 2022-10-06 04:23:56,633 - stpipe.Spec2Pipeline - INFO - Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0035.asdf'. 2022-10-06 04:23:56,635 - stpipe.Spec2Pipeline - INFO - Prefetch for DISTORTION reference file is 'N/A'. 2022-10-06 04:23:56,635 - stpipe.Spec2Pipeline - INFO - Prefetch for DRIZPARS reference file is 'N/A'. 2022-10-06 04:23:56,635 - stpipe.Spec2Pipeline - INFO - Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0004.json'. 2022-10-06 04:23:56,638 - stpipe.Spec2Pipeline - INFO - Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0004.fits'. 2022-10-06 04:23:56,639 - stpipe.Spec2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is 'N/A'. 2022-10-06 04:23:56,639 - stpipe.Spec2Pipeline - INFO - Prefetch for FLAT reference file is 'N/A'. 2022-10-06 04:23:56,639 - stpipe.Spec2Pipeline - INFO - Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0022.asdf'. 2022-10-06 04:23:56,641 - stpipe.Spec2Pipeline - INFO - Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. 2022-10-06 04:23:56,643 - stpipe.Spec2Pipeline - INFO - Prefetch for FRINGE reference file is 'N/A'. 2022-10-06 04:23:56,643 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'. 2022-10-06 04:23:56,643 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'. 2022-10-06 04:23:56,643 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'. 2022-10-06 04:23:56,643 - stpipe.Spec2Pipeline - INFO - Prefetch for MRSXARTCORR reference file is 'N/A'. 2022-10-06 04:23:56,643 - stpipe.Spec2Pipeline - INFO - Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. 2022-10-06 04:23:56,646 - stpipe.Spec2Pipeline - INFO - Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. 2022-10-06 04:23:56,647 - stpipe.Spec2Pipeline - INFO - Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. 2022-10-06 04:23:56,649 - stpipe.Spec2Pipeline - INFO - Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0001.fits'. 2022-10-06 04:23:56,650 - stpipe.Spec2Pipeline - INFO - Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0014.fits'. 2022-10-06 04:23:56,651 - stpipe.Spec2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'. 2022-10-06 04:23:56,651 - stpipe.Spec2Pipeline - INFO - Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0010.fits'. 2022-10-06 04:23:56,654 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECKERNEL reference file is 'N/A'. 2022-10-06 04:23:56,654 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECPROFILE reference file is 'N/A'. 2022-10-06 04:23:56,654 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECTRACE reference file is 'N/A'. 2022-10-06 04:23:56,654 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'. 2022-10-06 04:23:56,654 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0003.asdf'. 2022-10-06 04:23:56,656 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. 2022-10-06 04:23:56,658 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVEMAP reference file is 'N/A'. 2022-10-06 04:23:56,658 - stpipe.Spec2Pipeline - INFO - Prefetch for WFSSBKG reference file is 'N/A'. 2022-10-06 04:23:56,658 - stpipe.Spec2Pipeline - INFO - Starting calwebb_spec2 ... 2022-10-06 04:23:56,658 - stpipe.Spec2Pipeline - INFO - Processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw93045010001_02101_00001_nrs2 2022-10-06 04:23:56,658 - stpipe.Spec2Pipeline - INFO - Working on input /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw93045010001_02101_00001_nrs2_rate.fits ... 2022-10-06 04:23:56,956 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(64, 2048) from jw93045010001_02101_00001_nrs2_rate.fits>,). 2022-10-06 04:23:56,957 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} 2022-10-06 04:23:57,125 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_ytilt is 0.1459361909999999 deg 2022-10-06 04:23:57,125 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.3209364410000003 deg 2022-10-06 04:23:57,125 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_y correction: 0.002662951944890008 deg 2022-10-06 04:23:57,126 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_x correction: 0.0 deg 2022-10-06 04:23:57,310 - stpipe.Spec2Pipeline.assign_wcs - INFO - Slits projected on detector NRS2: ['S400A1'] 2022-10-06 04:23:57,311 - stpipe.Spec2Pipeline.assign_wcs - INFO - Computing WCS for 1 open slitlets 2022-10-06 04:23:57,346 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_ytilt is 0.1459361909999999 deg 2022-10-06 04:23:57,346 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.3209364410000003 deg 2022-10-06 04:23:57,347 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_y correction: 0.002662951944890008 deg 2022-10-06 04:23:57,348 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_x correction: 0.0 deg 2022-10-06 04:23:57,361 - stpipe.Spec2Pipeline.assign_wcs - INFO - SPORDER= -1, wrange=[2.87e-06, 5.27e-06] 2022-10-06 04:23:57,507 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 1 2022-10-06 04:23:57,507 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 2 2022-10-06 04:23:57,507 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 3 2022-10-06 04:23:57,507 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 4 2022-10-06 04:23:57,507 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 1 open slits in quadrant 5 2022-10-06 04:23:57,657 - stpipe.Spec2Pipeline.assign_wcs - INFO - Created a NIRSPEC nrs_fixedslit pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0035.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0022.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} 2022-10-06 04:23:57,797 - stpipe.Spec2Pipeline.assign_wcs - INFO - COMPLETED assign_wcs 2022-10-06 04:23:58,118 - stpipe.Spec2Pipeline.assign_wcs - INFO - Saved model in jw93045010001_02101_00001_nrs2_assign_wcs.fits 2022-10-06 04:23:58,118 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs done 2022-10-06 04:23:58,268 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract running with args (<ImageModel(64, 2048) from jw93045010001_02101_00001_nrs2_assign_wcs.fits>, []). 2022-10-06 04:23:58,269 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None} 2022-10-06 04:23:58,269 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step skipped. 2022-10-06 04:23:58,271 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract done 2022-10-06 04:23:58,398 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract running with args (<ImageModel(64, 2048) from jw93045010001_02101_00001_nrs2_assign_wcs.fits>, []). 2022-10-06 04:23:58,399 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'} 2022-10-06 04:23:58,399 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step skipped. 2022-10-06 04:23:58,402 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract done 2022-10-06 04:23:58,526 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging running with args (<ImageModel(64, 2048) from jw93045010001_02101_00001_nrs2_assign_wcs.fits>,). 2022-10-06 04:23:58,527 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'} 2022-10-06 04:23:58,527 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step skipped. 2022-10-06 04:23:58,529 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging done 2022-10-06 04:23:58,654 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d running with args (<ImageModel(64, 2048) from jw93045010001_02101_00001_nrs2_assign_wcs.fits>,). 2022-10-06 04:23:58,655 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000} 2022-10-06 04:23:58,671 - stpipe.Spec2Pipeline.extract_2d - INFO - EXP_TYPE is NRS_FIXEDSLIT 2022-10-06 04:23:58,844 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: S400A1 2022-10-06 04:23:58,844 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 0 2048 2022-10-06 04:23:58,845 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 6 67 2022-10-06 04:23:59,102 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2022-10-06 04:23:59,109 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 80.488650958 -69.498704376 80.486478523 -69.497843122 80.486238928 -69.497918609 80.488411306 -69.498779890 2022-10-06 04:23:59,110 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 80.488650958 -69.498704376 80.486478523 -69.497843122 80.486238928 -69.497918609 80.488411306 -69.498779890 2022-10-06 04:23:59,492 - stpipe.Spec2Pipeline.extract_2d - INFO - Saved model in jw93045010001_02101_00001_nrs2_extract_2d.fits 2022-10-06 04:23:59,492 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d done 2022-10-06 04:23:59,638 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype running with args (<MultiSlitModel from jw93045010001_02101_00001_nrs2_extract_2d.fits>,). 2022-10-06 04:23:59,639 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'source_type': None} 2022-10-06 04:23:59,645 - stpipe.Spec2Pipeline.srctype - INFO - Input EXP_TYPE is NRS_FIXEDSLIT 2022-10-06 04:23:59,646 - stpipe.Spec2Pipeline.srctype - INFO - Input SRCTYAPT = None 2022-10-06 04:23:59,646 - stpipe.Spec2Pipeline.srctype - WARNING - SRCTYAPT keyword not found in input; using SRCTYPE instead 2022-10-06 04:23:59,646 - stpipe.Spec2Pipeline.srctype - INFO - Input source type is unknown; setting default SRCTYPE = POINT 2022-10-06 04:23:59,983 - stpipe.Spec2Pipeline.srctype - INFO - Saved model in jw93045010001_02101_00001_nrs2_srctype.fits 2022-10-06 04:23:59,983 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype done 2022-10-06 04:24:00,130 - stpipe.Spec2Pipeline.master_background_mos - INFO - Step master_background_mos running with args (<MultiSlitModel from jw93045010001_02101_00001_nrs2_srctype.fits>,). 2022-10-06 04:24:00,133 - stpipe.Spec2Pipeline.master_background_mos - INFO - Step master_background_mos parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}}} 2022-10-06 04:24:00,133 - stpipe.Spec2Pipeline.master_background_mos - INFO - Step skipped. 2022-10-06 04:24:00,134 - stpipe.Spec2Pipeline.master_background_mos - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:24:00,134 - stpipe.Spec2Pipeline.master_background_mos - INFO - Step master_background_mos done 2022-10-06 04:24:00,272 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr running with args (<MultiSlitModel from jw93045010001_02101_00001_nrs2_srctype.fits>,). 2022-10-06 04:24:00,272 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'} 2022-10-06 04:24:00,310 - stpipe.Spec2Pipeline.wavecorr - INFO - Using WAVECORR reference file /grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0003.asdf 2022-10-06 04:24:00,533 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a POINT source type in slit S400A1 2022-10-06 04:24:00,533 - stpipe.Spec2Pipeline.wavecorr - INFO - slit name S400A1 2022-10-06 04:24:00,534 - stpipe.Spec2Pipeline.wavecorr - INFO - xoffset, yoffset, 0.0, 0.0 2022-10-06 04:24:00,543 - stpipe.Spec2Pipeline.wavecorr - INFO - Source X/Y position in the slit: -1.4909106595922167e-05, -0.027985251299890587 2022-10-06 04:24:00,774 - stpipe.Spec2Pipeline.wavecorr - INFO - Using wavelength zero-point correction for aperture S400A1 2022-10-06 04:24:01,127 - stpipe.Spec2Pipeline.wavecorr - INFO - Saved model in jw93045010001_02101_00001_nrs2_wavecorr.fits 2022-10-06 04:24:01,127 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr done 2022-10-06 04:24:01,287 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field running with args (<MultiSlitModel from jw93045010001_02101_00001_nrs2_wavecorr.fits>,). 2022-10-06 04:24:01,288 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2022-10-06 04:24:03,451 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit S400A1 2022-10-06 04:24:03,452 - stpipe.Spec2Pipeline.flat_field - INFO - Creating wavelength array from WCS for slit S400A1 2022-10-06 04:24:40,009 - stpipe.Spec2Pipeline.flat_field - INFO - Saved model in jw93045010001_02101_00001_nrs2_flat_field.fits 2022-10-06 04:24:40,009 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field done 2022-10-06 04:24:40,188 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss running with args (<MultiSlitModel from jw93045010001_02101_00001_nrs2_flat_field.fits>,). 2022-10-06 04:24:40,189 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None} 2022-10-06 04:24:40,211 - stpipe.Spec2Pipeline.pathloss - INFO - Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0001.fits 2022-10-06 04:24:40,316 - stpipe.Spec2Pipeline.pathloss - INFO - Input exposure type is NRS_FIXEDSLIT 2022-10-06 04:24:40,549 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit S400A1 2022-10-06 04:24:40,550 - stpipe.Spec2Pipeline.pathloss - WARNING - Cannot find matching pathloss model for S400A1 2022-10-06 04:24:40,550 - stpipe.Spec2Pipeline.pathloss - WARNING - Skipping pathloss correction for this slit 2022-10-06 04:24:40,550 - stpipe.Spec2Pipeline.pathloss - WARNING - No correction provided for slit 0. Skipping 2022-10-06 04:24:40,902 - stpipe.Spec2Pipeline.pathloss - INFO - Saved model in jw93045010001_02101_00001_nrs2_pathloss.fits 2022-10-06 04:24:40,902 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss done 2022-10-06 04:24:41,063 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow running with args (<MultiSlitModel from jw93045010001_02101_00001_nrs2_pathloss.fits>,). 2022-10-06 04:24:41,064 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None} 2022-10-06 04:24:41,064 - stpipe.Spec2Pipeline.barshadow - INFO - Step skipped. 2022-10-06 04:24:41,066 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow done 2022-10-06 04:24:41,218 - stpipe.Spec2Pipeline.photom - INFO - Step photom running with args (<MultiSlitModel from jw93045010001_02101_00001_nrs2_pathloss.fits>,). 2022-10-06 04:24:41,219 - stpipe.Spec2Pipeline.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None} 2022-10-06 04:24:41,255 - stpipe.Spec2Pipeline.photom - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0014.fits 2022-10-06 04:24:41,255 - stpipe.Spec2Pipeline.photom - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0027.fits 2022-10-06 04:24:41,482 - stpipe.Spec2Pipeline.photom - INFO - Using instrument: NIRSPEC 2022-10-06 04:24:41,482 - stpipe.Spec2Pipeline.photom - INFO - detector: NRS2 2022-10-06 04:24:41,482 - stpipe.Spec2Pipeline.photom - INFO - exp_type: NRS_FIXEDSLIT 2022-10-06 04:24:41,482 - stpipe.Spec2Pipeline.photom - INFO - filter: F290LP 2022-10-06 04:24:41,482 - stpipe.Spec2Pipeline.photom - INFO - grating: G395H 2022-10-06 04:24:41,555 - stpipe.Spec2Pipeline.photom - INFO - Working on slit S400A1 2022-10-06 04:24:41,556 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 1 2022-10-06 04:24:41,679 - stpipe.Spec2Pipeline.photom - INFO - Step photom done 2022-10-06 04:24:41,850 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec running with args (<MultiSlitModel from jw93045010001_02101_00001_nrs2_cal.fits>,). 2022-10-06 04:24:41,852 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True} 2022-10-06 04:24:41,878 - stpipe.Spec2Pipeline.resample_spec - INFO - No DRIZPARS reffile 2022-10-06 04:24:41,879 - stpipe.Spec2Pipeline.resample_spec - INFO - using: pixfrac=1.0 2022-10-06 04:24:41,879 - stpipe.Spec2Pipeline.resample_spec - INFO - using: kernel='square' 2022-10-06 04:24:41,879 - stpipe.Spec2Pipeline.resample_spec - INFO - using: fillval='INDEF' 2022-10-06 04:24:41,879 - stpipe.Spec2Pipeline.resample_spec - INFO - using: wht_type='ivm' 2022-10-06 04:24:41,879 - stpipe.Spec2Pipeline.resample_spec - INFO - using: pscale_ratio=1.0 2022-10-06 04:24:41,879 - stpipe.Spec2Pipeline.resample_spec - INFO - Reorganizing data from exposure jw93045010001_02101_00001_nrs2_cal.fits 2022-10-06 04:24:42,477 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter kernal: square 2022-10-06 04:24:42,477 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter pixfrac: 1.0 2022-10-06 04:24:42,477 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter fillval: INDEF 2022-10-06 04:24:42,477 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter weight_type: ivm 2022-10-06 04:24:42,657 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2022-10-06 04:24:42,815 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (58, 2048) --> (42, 2048) 2022-10-06 04:24:42,834 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2022-10-06 04:24:42,992 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (58, 2048) --> (42, 2048) 2022-10-06 04:24:43,013 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2022-10-06 04:24:43,171 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (58, 2048) --> (42, 2048) 2022-10-06 04:24:43,192 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2022-10-06 04:24:43,351 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (58, 2048) --> (42, 2048) 2022-10-06 04:24:43,432 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 79.987220080 -69.653097797 80.488502980 -69.653097797 80.488502980 -69.497865970 79.987220080 -69.497865970 2022-10-06 04:24:43,813 - stpipe.Spec2Pipeline.resample_spec - INFO - Saved model in jw93045010001_02101_00001_nrs2_s2d.fits 2022-10-06 04:24:43,813 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec done 2022-10-06 04:24:43,992 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d running with args (<MultiSlitModel from jw93045010001_02101_00001_nrs2_s2d.fits>,). 2022-10-06 04:24:43,993 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None} 2022-10-06 04:24:44,012 - stpipe.Spec2Pipeline.extract_1d - INFO - Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0004.json 2022-10-06 04:24:44,024 - stpipe.Spec2Pipeline.extract_1d - INFO - Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0003.fits 2022-10-06 04:24:44,082 - stpipe.Spec2Pipeline.extract_1d - INFO - Turning on source position correction for exp_type = NRS_FIXEDSLIT 2022-10-06 04:24:44,083 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit S400A1 2022-10-06 04:24:44,150 - stpipe.Spec2Pipeline.extract_1d - INFO - Applying position offset of 1.69 to ystart and ystop 2022-10-06 04:24:44,150 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: xstart=0, xstop=2047, ystart=19.18706652908449, ystop=25.18706652908449 2022-10-06 04:24:44,467 - stpipe.Spec2Pipeline.extract_1d - INFO - Applying Aperture correction. 2022-10-06 04:24:47,693 - stpipe.Spec2Pipeline.extract_1d - INFO - Saved model in jw93045010001_02101_00001_nrs2_x1d.fits 2022-10-06 04:24:47,693 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d done 2022-10-06 04:24:47,694 - stpipe.Spec2Pipeline - INFO - Finished processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw93045010001_02101_00001_nrs2 2022-10-06 04:24:47,694 - stpipe.Spec2Pipeline - INFO - Ending calwebb_spec2 2022-10-06 04:24:47,694 - stpipe.Spec2Pipeline - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:24:48,047 - stpipe.Spec2Pipeline - INFO - Saved model in jw93045010001_02101_00001_nrs2_cal.fits 2022-10-06 04:24:48,047 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline done -------------------------------Captured log setup------------------------------- INFO stpipe.Spec2Pipeline:step.py:366 Spec2Pipeline instance created. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:366 BackgroundStep instance created. INFO stpipe.Spec2Pipeline.assign_wcs:step.py:366 AssignWcsStep instance created. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:366 ImprintStep instance created. INFO stpipe.Spec2Pipeline.msa_flagging:step.py:366 MSAFlagOpenStep instance created. INFO stpipe.Spec2Pipeline.extract_2d:step.py:366 Extract2dStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos:step.py:366 MasterBackgroundMosStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:step.py:366 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:step.py:366 PathLossStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:step.py:366 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.photom:step.py:366 PhotomStep instance created. INFO stpipe.Spec2Pipeline.wavecorr:step.py:366 WavecorrStep instance created. INFO stpipe.Spec2Pipeline.flat_field:step.py:366 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.srctype:step.py:366 SourceTypeStep instance created. INFO stpipe.Spec2Pipeline.straylight:step.py:366 StraylightStep instance created. INFO stpipe.Spec2Pipeline.fringe:step.py:366 FringeStep instance created. INFO stpipe.Spec2Pipeline.pathloss:step.py:366 PathLossStep instance created. INFO stpipe.Spec2Pipeline.barshadow:step.py:366 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.wfss_contam:step.py:366 WfssContamStep instance created. INFO stpipe.Spec2Pipeline.photom:step.py:366 PhotomStep instance created. INFO stpipe.Spec2Pipeline.resample_spec:step.py:366 ResampleSpecStep instance created. INFO stpipe.Spec2Pipeline.cube_build:step.py:366 CubeBuildStep instance created. INFO stpipe.Spec2Pipeline.extract_1d:step.py:366 Extract1dStep instance created. INFO stpipe.Spec2Pipeline:step.py:430 Step Spec2Pipeline running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw93045010001_02101_00001_nrs2_rate.fits',). INFO stpipe.Spec2Pipeline:step.py:434 Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_bsub': False, 'fail_on_exception': True, 'save_wfss_esec': False, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000}, 'master_background_mos': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'source_type': None}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'wfss_contam': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_simulated_image': False, 'save_contam_images': False, 'maximum_cores': 'none'}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'drizzle', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None}}} INFO stpipe.Spec2Pipeline:pipeline.py:358 Prefetching reference files for dataset: 'jw93045010001_02101_00001_nrs2_rate.fits' reftypes = ['apcorr', 'area', 'barshadow', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'mrsxartcorr', 'msa', 'msaoper', 'ote', 'pathloss', 'photom', 'regions', 'sflat', 'speckernel', 'specprofile', 'spectrace', 'specwcs', 'wavecorr', 'wavelengthrange', 'wavemap', 'wfssbkg'] INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0003.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0027.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for BARSHADOW reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for CUBEPAR reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0002.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0035.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DISTORTION reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DRIZPARS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0004.json'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0004.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FILTEROFFSET reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FLAT reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0022.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FRINGE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for IFUFORE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for IFUPOST reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for IFUSLICER reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for MRSXARTCORR reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0001.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0014.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for REGIONS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0010.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECKERNEL reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECPROFILE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECTRACE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECWCS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0003.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WAVEMAP reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WFSSBKG reference file is 'N/A'. INFO stpipe.Spec2Pipeline:calwebb_spec2.py:92 Starting calwebb_spec2 ... INFO stpipe.Spec2Pipeline:calwebb_spec2.py:110 Processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw93045010001_02101_00001_nrs2 INFO stpipe.Spec2Pipeline:calwebb_spec2.py:176 Working on input /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw93045010001_02101_00001_nrs2_rate.fits ... DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:347 Science data does not allow direct background subtraction. Skipping "bkg_subtract". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:359 Science data does not allow imprint processing. Skipping "imprint_subtraction". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:365 Science data does not allow MSA flagging. Skipping "msa_flagging". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:370 Science data does not allow stray light correction. Skipping "straylight". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:375 Science data does not allow fringe correction. Skipping "fringe". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:386 Science data does not allow barshadow correction. Skipping "barshadow". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:391 Science data does not allow master background correction. Skipping "master_background_mos". INFO stpipe.Spec2Pipeline.assign_wcs:step.py:430 Step assign_wcs running with args (<ImageModel(64, 2048) from jw93045010001_02101_00001_nrs2_rate.fits>,). INFO stpipe.Spec2Pipeline.assign_wcs:step.py:434 Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:80 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0035.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0022.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:80 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0035.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0022.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1375 gwa_ytilt is 0.1459361909999999 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1375 gwa_ytilt is 0.1459361909999999 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1376 gwa_xtilt is 0.3209364410000003 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1376 gwa_xtilt is 0.3209364410000003 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1380 theta_y correction: 0.002662951944890008 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1380 theta_y correction: 0.002662951944890008 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:424 Slits projected on detector NRS2: ['S400A1'] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:424 Slits projected on detector NRS2: ['S400A1'] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:308 Computing WCS for 1 open slitlets INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:308 Computing WCS for 1 open slitlets INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1375 gwa_ytilt is 0.1459361909999999 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1375 gwa_ytilt is 0.1459361909999999 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1376 gwa_xtilt is 0.3209364410000003 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1376 gwa_xtilt is 0.3209364410000003 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1380 theta_y correction: 0.002662951944890008 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1380 theta_y correction: 0.002662951944890008 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:330 SPORDER= -1, wrange=[2.87e-06, 5.27e-06] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:330 SPORDER= -1, wrange=[2.87e-06, 5.27e-06] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 1 open slits in quadrant 5 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 1 open slits in quadrant 5 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:62 Created a NIRSPEC nrs_fixedslit pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0035.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0022.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:62 Created a NIRSPEC nrs_fixedslit pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0035.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0022.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} INFO stpipe.Spec2Pipeline.assign_wcs:assign_wcs.py:96 COMPLETED assign_wcs INFO stpipe.Spec2Pipeline.assign_wcs:assign_wcs.py:96 COMPLETED assign_wcs INFO stpipe.Spec2Pipeline.assign_wcs:step.py:1016 Saved model in jw93045010001_02101_00001_nrs2_assign_wcs.fits INFO stpipe.Spec2Pipeline.assign_wcs:step.py:546 Step assign_wcs done INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:430 Step bkg_subtract running with args (<ImageModel(64, 2048) from jw93045010001_02101_00001_nrs2_assign_wcs.fits>, []). INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:434 Step bkg_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None} INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:546 Step bkg_subtract done INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:430 Step imprint_subtract running with args (<ImageModel(64, 2048) from jw93045010001_02101_00001_nrs2_assign_wcs.fits>, []). INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:434 Step imprint_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'} INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:546 Step imprint_subtract done INFO stpipe.Spec2Pipeline.msa_flagging:step.py:430 Step msa_flagging running with args (<ImageModel(64, 2048) from jw93045010001_02101_00001_nrs2_assign_wcs.fits>,). INFO stpipe.Spec2Pipeline.msa_flagging:step.py:434 Step msa_flagging parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'} INFO stpipe.Spec2Pipeline.msa_flagging:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.msa_flagging:step.py:546 Step msa_flagging done INFO stpipe.Spec2Pipeline.extract_2d:step.py:430 Step extract_2d running with args (<ImageModel(64, 2048) from jw93045010001_02101_00001_nrs2_assign_wcs.fits>,). INFO stpipe.Spec2Pipeline.extract_2d:step.py:434 Step extract_2d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000} INFO stpipe.Spec2Pipeline.extract_2d:extract_2d.py:61 EXP_TYPE is NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.extract_2d:extract_2d.py:61 EXP_TYPE is NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S400A1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S400A1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 0 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 0 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 6 67 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 6 67 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 80.488650958 -69.498704376 80.486478523 -69.497843122 80.486238928 -69.497918609 80.488411306 -69.498779890 INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 80.488650958 -69.498704376 80.486478523 -69.497843122 80.486238928 -69.497918609 80.488411306 -69.498779890 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 80.488650958 -69.498704376 80.486478523 -69.497843122 80.486238928 -69.497918609 80.488411306 -69.498779890 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 80.488650958 -69.498704376 80.486478523 -69.497843122 80.486238928 -69.497918609 80.488411306 -69.498779890 INFO stpipe.Spec2Pipeline.extract_2d:step.py:1016 Saved model in jw93045010001_02101_00001_nrs2_extract_2d.fits INFO stpipe.Spec2Pipeline.extract_2d:step.py:546 Step extract_2d done INFO stpipe.Spec2Pipeline.srctype:step.py:430 Step srctype running with args (<MultiSlitModel from jw93045010001_02101_00001_nrs2_extract_2d.fits>,). INFO stpipe.Spec2Pipeline.srctype:step.py:434 Step srctype parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'source_type': None} INFO stpipe.Spec2Pipeline.srctype:srctype.py:39 Input EXP_TYPE is NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.srctype:srctype.py:39 Input EXP_TYPE is NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.srctype:srctype.py:62 Input SRCTYAPT = None INFO stpipe.Spec2Pipeline.srctype:srctype.py:62 Input SRCTYAPT = None WARNING stpipe.Spec2Pipeline.srctype:srctype.py:64 SRCTYAPT keyword not found in input; using SRCTYPE instead WARNING stpipe.Spec2Pipeline.srctype:srctype.py:64 SRCTYAPT keyword not found in input; using SRCTYPE instead INFO stpipe.Spec2Pipeline.srctype:srctype.py:119 Input source type is unknown; setting default SRCTYPE = POINT INFO stpipe.Spec2Pipeline.srctype:srctype.py:119 Input source type is unknown; setting default SRCTYPE = POINT DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:137 primary_slit = S400A1 DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:137 primary_slit = S400A1 DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:143 slit S400A1 = POINT DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:143 slit S400A1 = POINT INFO stpipe.Spec2Pipeline.srctype:step.py:1016 Saved model in jw93045010001_02101_00001_nrs2_srctype.fits INFO stpipe.Spec2Pipeline.srctype:step.py:546 Step srctype done INFO stpipe.Spec2Pipeline.master_background_mos:step.py:430 Step master_background_mos running with args (<MultiSlitModel from jw93045010001_02101_00001_nrs2_srctype.fits>,). INFO stpipe.Spec2Pipeline.master_background_mos:step.py:434 Step master_background_mos parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}}} INFO stpipe.Spec2Pipeline.master_background_mos:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.master_background_mos:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Spec2Pipeline.master_background_mos:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Spec2Pipeline.master_background_mos:step.py:546 Step master_background_mos done INFO stpipe.Spec2Pipeline.wavecorr:step.py:430 Step wavecorr running with args (<MultiSlitModel from jw93045010001_02101_00001_nrs2_srctype.fits>,). INFO stpipe.Spec2Pipeline.wavecorr:step.py:434 Step wavecorr parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'} INFO stpipe.Spec2Pipeline.wavecorr:wavecorr_step.py:56 Using WAVECORR reference file /grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0003.asdf INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:244 Detected a POINT source type in slit S400A1 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:244 Detected a POINT source type in slit S400A1 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:116 slit name S400A1 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:116 slit name S400A1 DEBUG stpipe.Spec2Pipeline.wavecorr:wavecorr.py:281 wcsinfo: 321.871582, -477.938751, 138.782761, -1 DEBUG stpipe.Spec2Pipeline.wavecorr:wavecorr.py:281 wcsinfo: 321.871582, -477.938751, 138.782761, -1 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:284 xoffset, yoffset, 0.0, 0.0 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:284 xoffset, yoffset, 0.0, 0.0 DEBUG stpipe.Spec2Pipeline.wavecorr:wavecorr.py:292 Source X/Y position in V2V3: 321.871582, -477.938751 DEBUG stpipe.Spec2Pipeline.wavecorr:wavecorr.py:292 Source X/Y position in V2V3: 321.871582, -477.938751 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:293 Source X/Y position in the slit: -1.4909106595922167e-05, -0.027985251299890587 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:293 Source X/Y position in the slit: -1.4909106595922167e-05, -0.027985251299890587 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:170 Using wavelength zero-point correction for aperture S400A1 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:170 Using wavelength zero-point correction for aperture S400A1 INFO stpipe.Spec2Pipeline.wavecorr:step.py:1016 Saved model in jw93045010001_02101_00001_nrs2_wavecorr.fits INFO stpipe.Spec2Pipeline.wavecorr:step.py:546 Step wavecorr done INFO stpipe.Spec2Pipeline.flat_field:step.py:430 Step flat_field running with args (<MultiSlitModel from jw93045010001_02101_00001_nrs2_wavecorr.fits>,). INFO stpipe.Spec2Pipeline.flat_field:step.py:434 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:74 Input is MultiSlitModel of exposure type NRS_FIXEDSLIT DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:201 No reference found for type FLAT DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:199 Using FFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_fflat_0004.fits DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:199 Using SFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_sflat_0010.fits DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:199 Using DFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_dflat_0002.fits DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit S400A1 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit S400A1 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:1943 Creating wavelength array from WCS for slit S400A1 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:1943 Creating wavelength array from WCS for slit S400A1 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 38426 out of 118784 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 38426 out of 118784 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1221 The table wavelength or flat-field data array contained 8038 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1221 The table wavelength or flat-field data array contained 8038 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 4 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 4 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 38441 out of 118784 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 38441 out of 118784 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1221 The table wavelength or flat-field data array contained 8038 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1221 The table wavelength or flat-field data array contained 8038 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 4 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 4 flat-field values <= 0 INFO stpipe.Spec2Pipeline.flat_field:step.py:1016 Saved model in jw93045010001_02101_00001_nrs2_flat_field.fits INFO stpipe.Spec2Pipeline.flat_field:step.py:546 Step flat_field done INFO stpipe.Spec2Pipeline.pathloss:step.py:430 Step pathloss running with args (<MultiSlitModel from jw93045010001_02101_00001_nrs2_flat_field.fits>,). INFO stpipe.Spec2Pipeline.pathloss:step.py:434 Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None} INFO stpipe.Spec2Pipeline.pathloss:pathloss_step.py:38 Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0001.fits INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:232 Input exposure type is NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:232 Input exposure type is NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:458 Working on slit S400A1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:458 Working on slit S400A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200A2 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200A2 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200B1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200B1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S1600A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S1600A1 WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:847 Cannot find matching pathloss model for S400A1 WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:847 Cannot find matching pathloss model for S400A1 WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:848 Skipping pathloss correction for this slit WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:848 Skipping pathloss correction for this slit WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:468 No correction provided for slit 0. Skipping WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:468 No correction provided for slit 0. Skipping INFO stpipe.Spec2Pipeline.pathloss:step.py:1016 Saved model in jw93045010001_02101_00001_nrs2_pathloss.fits INFO stpipe.Spec2Pipeline.pathloss:step.py:546 Step pathloss done INFO stpipe.Spec2Pipeline.barshadow:step.py:430 Step barshadow running with args (<MultiSlitModel from jw93045010001_02101_00001_nrs2_pathloss.fits>,). INFO stpipe.Spec2Pipeline.barshadow:step.py:434 Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None} INFO stpipe.Spec2Pipeline.barshadow:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.barshadow:step.py:546 Step barshadow done INFO stpipe.Spec2Pipeline.photom:step.py:430 Step photom running with args (<MultiSlitModel from jw93045010001_02101_00001_nrs2_pathloss.fits>,). INFO stpipe.Spec2Pipeline.photom:step.py:434 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None} DEBUG stpipe.Spec2Pipeline.photom:photom_step.py:35 Input is MultiSlitModel INFO stpipe.Spec2Pipeline.photom:photom_step.py:55 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0014.fits INFO stpipe.Spec2Pipeline.photom:photom_step.py:56 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0027.fits INFO stpipe.Spec2Pipeline.photom:photom.py:144 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.photom:photom.py:144 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.photom:photom.py:145 detector: NRS2 INFO stpipe.Spec2Pipeline.photom:photom.py:145 detector: NRS2 INFO stpipe.Spec2Pipeline.photom:photom.py:146 exp_type: NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.photom:photom.py:146 exp_type: NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.photom:photom.py:148 filter: F290LP INFO stpipe.Spec2Pipeline.photom:photom.py:148 filter: F290LP INFO stpipe.Spec2Pipeline.photom:photom.py:152 grating: G395H INFO stpipe.Spec2Pipeline.photom:photom.py:152 grating: G395H INFO stpipe.Spec2Pipeline.photom:photom.py:216 Working on slit S400A1 INFO stpipe.Spec2Pipeline.photom:photom.py:216 Working on slit S400A1 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:step.py:546 Step photom done INFO stpipe.Spec2Pipeline.resample_spec:step.py:430 Step resample_spec running with args (<MultiSlitModel from jw93045010001_02101_00001_nrs2_cal.fits>,). INFO stpipe.Spec2Pipeline.resample_spec:step.py:434 Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True} INFO stpipe.Spec2Pipeline.resample_spec:resample_spec_step.py:60 No DRIZPARS reffile INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: pixfrac=1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: pixfrac=1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: kernel='square' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: kernel='square' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: fillval='INDEF' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: fillval='INDEF' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: wht_type='ivm' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: wht_type='ivm' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: pscale_ratio=1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: pscale_ratio=1.0 INFO stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:37 Reorganizing data from exposure jw93045010001_02101_00001_nrs2_cal.fits INFO stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:37 Reorganizing data from exposure jw93045010001_02101_00001_nrs2_cal.fits DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 3 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 3 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 57.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 57.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (58, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (58, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (58, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (58, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (42, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (42, 2048) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (58, 2048) --> (42, 2048) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (58, 2048) --> (42, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 57.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 57.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (58, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (58, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (58, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (58, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (58, 2048) --> (42, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (58, 2048) --> (42, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 57.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 57.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (58, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (58, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (58, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (58, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (58, 2048) --> (42, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (58, 2048) --> (42, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 57.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 57.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (58, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (58, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (58, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (58, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (58, 2048) --> (42, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (58, 2048) --> (42, 2048) INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 79.987220080 -69.653097797 80.488502980 -69.653097797 80.488502980 -69.497865970 79.987220080 -69.497865970 INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 79.987220080 -69.653097797 80.488502980 -69.653097797 80.488502980 -69.497865970 79.987220080 -69.497865970 INFO stpipe.Spec2Pipeline.resample_spec:step.py:1016 Saved model in jw93045010001_02101_00001_nrs2_s2d.fits INFO stpipe.Spec2Pipeline.resample_spec:step.py:546 Step resample_spec done INFO stpipe.Spec2Pipeline.extract_1d:step.py:430 Step extract_1d running with args (<MultiSlitModel from jw93045010001_02101_00001_nrs2_s2d.fits>,). INFO stpipe.Spec2Pipeline.extract_1d:step.py:434 Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None} DEBUG stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:159 Input is a MultiSlitModel INFO stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:389 Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0004.json INFO stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:397 Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0003.fits INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2780 Turning on source position correction for exp_type = NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2780 Turning on source position correction for exp_type = NRS_FIXEDSLIT DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2805 Input is a MultiSlitModel. DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2805 Input is a MultiSlitModel. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit S400A1 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit S400A1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = True DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = True DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1301 Spectrum location from WCS used column/row 1023 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1301 Spectrum location from WCS used column/row 1023 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1311 Target spectrum is at 22.19 in the cross-dispersion direction DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1311 Target spectrum is at 22.19 in the cross-dispersion direction DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1314 and the nominal XD location of the spectrum is 20.50 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1314 and the nominal XD location of the spectrum is 20.50 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:3400 Computed source offset=1.69, source location=22.19 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:3400 Computed source offset=1.69, source location=22.19 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:1608 Applying position offset of 1.69 to ystart and ystop INFO stpipe.Spec2Pipeline.extract_1d:extract.py:1608 Applying position offset of 1.69 to ystart and ystop DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 1.6870665290844897 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 1.6870665290844897 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[18.68706652908449], [25.68706652908449]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[18.68706652908449], [25.68706652908449]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=2047, ystart=19.18706652908449, ystop=25.18706652908449 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=2047, ystart=19.18706652908449, ystop=25.18706652908449 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3770 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3770 Applying Aperture correction. DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2952 Not copying from the INT_TIMES table because this is not a TSO exposure. DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2952 Not copying from the INT_TIMES table because this is not a TSO exposure. INFO stpipe.Spec2Pipeline.extract_1d:step.py:1016 Saved model in jw93045010001_02101_00001_nrs2_x1d.fits INFO stpipe.Spec2Pipeline.extract_1d:step.py:546 Step extract_1d done INFO stpipe.Spec2Pipeline:calwebb_spec2.py:314 Finished processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw93045010001_02101_00001_nrs2 INFO stpipe.Spec2Pipeline:calwebb_spec2.py:138 Ending calwebb_spec2 INFO stpipe.Spec2Pipeline:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Spec2Pipeline:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Spec2Pipeline:step.py:1016 Saved model in jw93045010001_02101_00001_nrs2_cal.fits INFO stpipe.Spec2Pipeline:step.py:546 Step Spec2Pipeline done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[S400A1-subarray-extract_2d] | 0.38 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[S400A1-subarray-wavecorr] | 0.24 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[S400A1-subarray-flat_field] | 0.22 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[S400A1-subarray-pathloss] | 0.29 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[S400A1-subarray-srctype] | 0.29 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[S400A1-subarray-cal] | 0.30 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[S400A1-subarray-x1d] | 0.15 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[ALLSLITS-subarray-assign_wcs] | 71.64 | |
|
-----------------------------Captured stderr setup------------------------------ 2022-10-06 04:24:51,183 - stpipe.Spec2Pipeline - INFO - Spec2Pipeline instance created. 2022-10-06 04:24:51,185 - stpipe.Spec2Pipeline.bkg_subtract - INFO - BackgroundStep instance created. 2022-10-06 04:24:51,186 - stpipe.Spec2Pipeline.assign_wcs - INFO - AssignWcsStep instance created. 2022-10-06 04:24:51,187 - stpipe.Spec2Pipeline.imprint_subtract - INFO - ImprintStep instance created. 2022-10-06 04:24:51,188 - stpipe.Spec2Pipeline.msa_flagging - INFO - MSAFlagOpenStep instance created. 2022-10-06 04:24:51,189 - stpipe.Spec2Pipeline.extract_2d - INFO - Extract2dStep instance created. 2022-10-06 04:24:51,192 - stpipe.Spec2Pipeline.master_background_mos - INFO - MasterBackgroundMosStep instance created. 2022-10-06 04:24:51,194 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - FlatFieldStep instance created. 2022-10-06 04:24:51,194 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - PathLossStep instance created. 2022-10-06 04:24:51,195 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - BarShadowStep instance created. 2022-10-06 04:24:51,196 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - PhotomStep instance created. 2022-10-06 04:24:51,196 - stpipe.Spec2Pipeline.wavecorr - INFO - WavecorrStep instance created. 2022-10-06 04:24:51,199 - stpipe.Spec2Pipeline.flat_field - INFO - FlatFieldStep instance created. 2022-10-06 04:24:51,199 - stpipe.Spec2Pipeline.srctype - INFO - SourceTypeStep instance created. 2022-10-06 04:24:51,200 - stpipe.Spec2Pipeline.straylight - INFO - StraylightStep instance created. 2022-10-06 04:24:51,201 - stpipe.Spec2Pipeline.fringe - INFO - FringeStep instance created. 2022-10-06 04:24:51,201 - stpipe.Spec2Pipeline.pathloss - INFO - PathLossStep instance created. 2022-10-06 04:24:51,202 - stpipe.Spec2Pipeline.barshadow - INFO - BarShadowStep instance created. 2022-10-06 04:24:51,203 - stpipe.Spec2Pipeline.wfss_contam - INFO - WfssContamStep instance created. 2022-10-06 04:24:51,204 - stpipe.Spec2Pipeline.photom - INFO - PhotomStep instance created. 2022-10-06 04:24:51,205 - stpipe.Spec2Pipeline.resample_spec - INFO - ResampleSpecStep instance created. 2022-10-06 04:24:51,206 - stpipe.Spec2Pipeline.cube_build - INFO - CubeBuildStep instance created. 2022-10-06 04:24:51,207 - stpipe.Spec2Pipeline.extract_1d - INFO - Extract1dStep instance created. 2022-10-06 04:24:51,587 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jwtest1013001_01101_00001_nrs1_rate.fits',). 2022-10-06 04:24:51,600 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_bsub': False, 'fail_on_exception': True, 'save_wfss_esec': False, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000}, 'master_background_mos': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'source_type': None}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'wfss_contam': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_simulated_image': False, 'save_contam_images': False, 'maximum_cores': 'none'}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'drizzle', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None}}} 2022-10-06 04:24:51,648 - stpipe.Spec2Pipeline - INFO - Prefetching reference files for dataset: 'jwtest1013001_01101_00001_nrs1_rate.fits' reftypes = ['apcorr', 'area', 'barshadow', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'mrsxartcorr', 'msa', 'msaoper', 'ote', 'pathloss', 'photom', 'regions', 'sflat', 'speckernel', 'specprofile', 'spectrace', 'specwcs', 'wavecorr', 'wavelengthrange', 'wavemap', 'wfssbkg'] 2022-10-06 04:24:51,704 - stpipe.Spec2Pipeline - INFO - Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0003.fits'. 2022-10-06 04:24:51,708 - stpipe.Spec2Pipeline - INFO - Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0026.fits'. 2022-10-06 04:24:51,710 - stpipe.Spec2Pipeline - INFO - Prefetch for BARSHADOW reference file is 'N/A'. 2022-10-06 04:24:51,710 - stpipe.Spec2Pipeline - INFO - Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. 2022-10-06 04:24:51,713 - stpipe.Spec2Pipeline - INFO - Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. 2022-10-06 04:24:51,716 - stpipe.Spec2Pipeline - INFO - Prefetch for CUBEPAR reference file is 'N/A'. 2022-10-06 04:24:51,716 - stpipe.Spec2Pipeline - INFO - Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits'. 2022-10-06 04:24:51,718 - stpipe.Spec2Pipeline - INFO - Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf'. 2022-10-06 04:24:51,719 - stpipe.Spec2Pipeline - INFO - Prefetch for DISTORTION reference file is 'N/A'. 2022-10-06 04:24:51,719 - stpipe.Spec2Pipeline - INFO - Prefetch for DRIZPARS reference file is 'N/A'. 2022-10-06 04:24:51,719 - stpipe.Spec2Pipeline - INFO - Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0004.json'. 2022-10-06 04:24:51,721 - stpipe.Spec2Pipeline - INFO - Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0003.fits'. 2022-10-06 04:24:51,723 - stpipe.Spec2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is 'N/A'. 2022-10-06 04:24:51,723 - stpipe.Spec2Pipeline - INFO - Prefetch for FLAT reference file is 'N/A'. 2022-10-06 04:24:51,723 - stpipe.Spec2Pipeline - INFO - Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf'. 2022-10-06 04:24:51,724 - stpipe.Spec2Pipeline - INFO - Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. 2022-10-06 04:24:51,726 - stpipe.Spec2Pipeline - INFO - Prefetch for FRINGE reference file is 'N/A'. 2022-10-06 04:24:51,726 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'. 2022-10-06 04:24:51,726 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'. 2022-10-06 04:24:51,726 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'. 2022-10-06 04:24:51,726 - stpipe.Spec2Pipeline - INFO - Prefetch for MRSXARTCORR reference file is 'N/A'. 2022-10-06 04:24:51,726 - stpipe.Spec2Pipeline - INFO - Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. 2022-10-06 04:24:51,728 - stpipe.Spec2Pipeline - INFO - Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. 2022-10-06 04:24:51,731 - stpipe.Spec2Pipeline - INFO - Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. 2022-10-06 04:24:51,735 - stpipe.Spec2Pipeline - INFO - Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0001.fits'. 2022-10-06 04:24:51,738 - stpipe.Spec2Pipeline - INFO - Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0014.fits'. 2022-10-06 04:24:51,741 - stpipe.Spec2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'. 2022-10-06 04:24:51,741 - stpipe.Spec2Pipeline - INFO - Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0014.fits'. 2022-10-06 04:24:51,746 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECKERNEL reference file is 'N/A'. 2022-10-06 04:24:51,746 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECPROFILE reference file is 'N/A'. 2022-10-06 04:24:51,746 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECTRACE reference file is 'N/A'. 2022-10-06 04:24:51,746 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'. 2022-10-06 04:24:51,746 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0003.asdf'. 2022-10-06 04:24:51,748 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf'. 2022-10-06 04:24:51,751 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVEMAP reference file is 'N/A'. 2022-10-06 04:24:51,751 - stpipe.Spec2Pipeline - INFO - Prefetch for WFSSBKG reference file is 'N/A'. 2022-10-06 04:24:51,751 - stpipe.Spec2Pipeline - INFO - Starting calwebb_spec2 ... 2022-10-06 04:24:51,752 - stpipe.Spec2Pipeline - INFO - Processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jwtest1013001_01101_00001_nrs1 2022-10-06 04:24:51,752 - stpipe.Spec2Pipeline - INFO - Working on input /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jwtest1013001_01101_00001_nrs1_rate.fits ... 2022-10-06 04:24:52,133 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(256, 2048) from jwtest1013001_01101_00001_nrs1_rate.fits>,). 2022-10-06 04:24:52,135 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} 2022-10-06 04:24:52,318 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_ytilt is 0.1389586 deg 2022-10-06 04:24:52,318 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.3212491 deg 2022-10-06 04:24:52,318 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_y correction: -8.017973385651406e-05 deg 2022-10-06 04:24:52,320 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_x correction: 0.0 deg 2022-10-06 04:24:52,583 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit S200B1 from the list of open slits because the WCS bounding_box is completely outside the detector. 2022-10-06 04:24:52,583 - stpipe.Spec2Pipeline.assign_wcs - INFO - Slits projected on detector NRS1: ['S200A1', 'S200A2', 'S400A1', 'S1600A1'] 2022-10-06 04:24:52,583 - stpipe.Spec2Pipeline.assign_wcs - INFO - Computing WCS for 4 open slitlets 2022-10-06 04:24:52,624 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_ytilt is 0.1389586 deg 2022-10-06 04:24:52,624 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.3212491 deg 2022-10-06 04:24:52,624 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_y correction: -8.017973385651406e-05 deg 2022-10-06 04:24:52,626 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_x correction: 0.0 deg 2022-10-06 04:24:52,641 - stpipe.Spec2Pipeline.assign_wcs - INFO - SPORDER= -1, wrange=[1.66e-06, 3.17e-06] 2022-10-06 04:24:52,804 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 1 2022-10-06 04:24:52,804 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 2 2022-10-06 04:24:52,804 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 3 2022-10-06 04:24:52,804 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 4 2022-10-06 04:24:52,804 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 4 open slits in quadrant 5 2022-10-06 04:24:53,006 - stpipe.Spec2Pipeline.assign_wcs - INFO - Created a NIRSPEC nrs_fixedslit pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} 2022-10-06 04:24:53,249 - stpipe.Spec2Pipeline.assign_wcs - INFO - COMPLETED assign_wcs 2022-10-06 04:24:54,204 - stpipe.Spec2Pipeline.assign_wcs - INFO - Saved model in jwtest1013001_01101_00001_nrs1_assign_wcs.fits 2022-10-06 04:24:54,204 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs done 2022-10-06 04:24:54,557 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract running with args (<ImageModel(256, 2048) from jwtest1013001_01101_00001_nrs1_assign_wcs.fits>, []). 2022-10-06 04:24:54,559 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None} 2022-10-06 04:24:54,559 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step skipped. 2022-10-06 04:24:54,562 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract done 2022-10-06 04:24:54,910 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract running with args (<ImageModel(256, 2048) from jwtest1013001_01101_00001_nrs1_assign_wcs.fits>, []). 2022-10-06 04:24:54,911 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'} 2022-10-06 04:24:54,911 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step skipped. 2022-10-06 04:24:54,914 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract done 2022-10-06 04:24:55,248 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging running with args (<ImageModel(256, 2048) from jwtest1013001_01101_00001_nrs1_assign_wcs.fits>,). 2022-10-06 04:24:55,249 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'} 2022-10-06 04:24:55,249 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step skipped. 2022-10-06 04:24:55,252 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging done 2022-10-06 04:24:55,591 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d running with args (<ImageModel(256, 2048) from jwtest1013001_01101_00001_nrs1_assign_wcs.fits>,). 2022-10-06 04:24:55,592 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000} 2022-10-06 04:24:55,612 - stpipe.Spec2Pipeline.extract_2d - INFO - EXP_TYPE is NRS_FIXEDSLIT 2022-10-06 04:24:55,835 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: S200A1 2022-10-06 04:24:55,836 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 711 2048 2022-10-06 04:24:55,836 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 159 205 2022-10-06 04:24:56,099 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2022-10-06 04:24:56,107 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 6.160418766 -66.583714125 6.162095795 -66.584471478 6.162203945 -66.584433017 6.160526938 -66.583675654 2022-10-06 04:24:56,108 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 6.160418766 -66.583714125 6.162095795 -66.584471478 6.162203945 -66.584433017 6.160526938 -66.583675654 2022-10-06 04:24:56,280 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: S200A2 2022-10-06 04:24:56,281 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 520 1955 2022-10-06 04:24:56,281 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 122 170 2022-10-06 04:24:56,507 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2022-10-06 04:24:56,515 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 6.172397448 -66.580865276 6.174066148 -66.581620581 6.174173384 -66.581582349 6.172504705 -66.580827034 2022-10-06 04:24:56,516 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 6.172397448 -66.580865276 6.174066148 -66.581620581 6.174173384 -66.581582349 6.172504705 -66.580827034 2022-10-06 04:24:56,687 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: S400A1 2022-10-06 04:24:56,687 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 641 2048 2022-10-06 04:24:56,687 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 82 134 2022-10-06 04:24:57,120 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2022-10-06 04:24:57,128 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 6.167427344 -66.584031436 6.169337167 -66.584894371 6.169548748 -66.584819067 6.167638973 -66.583956111 2022-10-06 04:24:57,129 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 6.167427344 -66.584031436 6.169337167 -66.584894371 6.169548748 -66.584819067 6.167638973 -66.583956111 2022-10-06 04:24:57,286 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: S1600A1 2022-10-06 04:24:57,287 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 665 2048 2022-10-06 04:24:57,287 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 62 91 2022-10-06 04:24:57,486 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2022-10-06 04:24:57,493 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 6.167855172 -66.585551195 6.168671819 -66.585919996 6.169510609 -66.585621566 6.168694043 -66.585252730 2022-10-06 04:24:57,494 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 6.167855172 -66.585551195 6.168671819 -66.585919996 6.169510609 -66.585621566 6.168694043 -66.585252730 2022-10-06 04:24:58,810 - stpipe.Spec2Pipeline.extract_2d - INFO - Saved model in jwtest1013001_01101_00001_nrs1_extract_2d.fits 2022-10-06 04:24:58,810 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d done 2022-10-06 04:24:58,969 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype running with args (<MultiSlitModel from jwtest1013001_01101_00001_nrs1_extract_2d.fits>,). 2022-10-06 04:24:58,970 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'source_type': None} 2022-10-06 04:24:58,977 - stpipe.Spec2Pipeline.srctype - INFO - Input EXP_TYPE is NRS_FIXEDSLIT 2022-10-06 04:24:58,977 - stpipe.Spec2Pipeline.srctype - INFO - Input SRCTYAPT = None 2022-10-06 04:24:58,977 - stpipe.Spec2Pipeline.srctype - WARNING - SRCTYAPT keyword not found in input; using SRCTYPE instead 2022-10-06 04:24:58,977 - stpipe.Spec2Pipeline.srctype - INFO - Input source type is unknown; setting default SRCTYPE = POINT 2022-10-06 04:24:59,948 - stpipe.Spec2Pipeline.srctype - INFO - Saved model in jwtest1013001_01101_00001_nrs1_srctype.fits 2022-10-06 04:24:59,948 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype done 2022-10-06 04:25:00,111 - stpipe.Spec2Pipeline.master_background_mos - INFO - Step master_background_mos running with args (<MultiSlitModel from jwtest1013001_01101_00001_nrs1_srctype.fits>,). 2022-10-06 04:25:00,114 - stpipe.Spec2Pipeline.master_background_mos - INFO - Step master_background_mos parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}}} 2022-10-06 04:25:00,115 - stpipe.Spec2Pipeline.master_background_mos - INFO - Step skipped. 2022-10-06 04:25:00,116 - stpipe.Spec2Pipeline.master_background_mos - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:25:00,116 - stpipe.Spec2Pipeline.master_background_mos - INFO - Step master_background_mos done 2022-10-06 04:25:00,268 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr running with args (<MultiSlitModel from jwtest1013001_01101_00001_nrs1_srctype.fits>,). 2022-10-06 04:25:00,269 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'} 2022-10-06 04:25:00,294 - stpipe.Spec2Pipeline.wavecorr - INFO - Using WAVECORR reference file /grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0003.asdf 2022-10-06 04:25:00,963 - stpipe.Spec2Pipeline.wavecorr - WARNING - Primary slit name not found in input 2022-10-06 04:25:00,963 - stpipe.Spec2Pipeline.wavecorr - WARNING - Skipping wavecorr correction 2022-10-06 04:25:02,132 - stpipe.Spec2Pipeline.wavecorr - INFO - Saved model in jwtest1013001_01101_00001_nrs1_wavecorr.fits 2022-10-06 04:25:02,132 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr done 2022-10-06 04:25:02,296 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field running with args (<MultiSlitModel from jwtest1013001_01101_00001_nrs1_wavecorr.fits>,). 2022-10-06 04:25:02,297 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2022-10-06 04:25:05,760 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit S200A1 2022-10-06 04:25:17,284 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit S200A2 2022-10-06 04:25:29,835 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit S400A1 2022-10-06 04:25:43,068 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit S1600A1 2022-10-06 04:25:49,597 - stpipe.Spec2Pipeline.flat_field - INFO - Saved model in jwtest1013001_01101_00001_nrs1_flat_field.fits 2022-10-06 04:25:49,598 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field done 2022-10-06 04:25:49,806 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss running with args (<MultiSlitModel from jwtest1013001_01101_00001_nrs1_flat_field.fits>,). 2022-10-06 04:25:49,807 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None} 2022-10-06 04:25:49,835 - stpipe.Spec2Pipeline.pathloss - INFO - Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0001.fits 2022-10-06 04:25:49,933 - stpipe.Spec2Pipeline.pathloss - INFO - Input exposure type is NRS_FIXEDSLIT 2022-10-06 04:25:50,638 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit S200A1 2022-10-06 04:25:50,638 - stpipe.Spec2Pipeline.pathloss - INFO - Using aperture S200A1 2022-10-06 04:25:50,667 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit S200A2 2022-10-06 04:25:50,667 - stpipe.Spec2Pipeline.pathloss - INFO - Using aperture S200A2 2022-10-06 04:25:50,697 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit S400A1 2022-10-06 04:25:50,697 - stpipe.Spec2Pipeline.pathloss - WARNING - Cannot find matching pathloss model for S400A1 2022-10-06 04:25:50,697 - stpipe.Spec2Pipeline.pathloss - WARNING - Skipping pathloss correction for this slit 2022-10-06 04:25:50,697 - stpipe.Spec2Pipeline.pathloss - WARNING - No correction provided for slit 2. Skipping 2022-10-06 04:25:50,698 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit S1600A1 2022-10-06 04:25:50,698 - stpipe.Spec2Pipeline.pathloss - INFO - Using aperture S1600A1 2022-10-06 04:25:51,930 - stpipe.Spec2Pipeline.pathloss - INFO - Saved model in jwtest1013001_01101_00001_nrs1_pathloss.fits 2022-10-06 04:25:51,930 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss done 2022-10-06 04:25:52,128 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow running with args (<MultiSlitModel from jwtest1013001_01101_00001_nrs1_pathloss.fits>,). 2022-10-06 04:25:52,129 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None} 2022-10-06 04:25:52,129 - stpipe.Spec2Pipeline.barshadow - INFO - Step skipped. 2022-10-06 04:25:52,131 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow done 2022-10-06 04:25:52,314 - stpipe.Spec2Pipeline.photom - INFO - Step photom running with args (<MultiSlitModel from jwtest1013001_01101_00001_nrs1_pathloss.fits>,). 2022-10-06 04:25:52,315 - stpipe.Spec2Pipeline.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None} 2022-10-06 04:25:52,360 - stpipe.Spec2Pipeline.photom - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0014.fits 2022-10-06 04:25:52,360 - stpipe.Spec2Pipeline.photom - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0026.fits 2022-10-06 04:25:53,057 - stpipe.Spec2Pipeline.photom - INFO - Using instrument: NIRSPEC 2022-10-06 04:25:53,057 - stpipe.Spec2Pipeline.photom - INFO - detector: NRS1 2022-10-06 04:25:53,057 - stpipe.Spec2Pipeline.photom - INFO - exp_type: NRS_FIXEDSLIT 2022-10-06 04:25:53,057 - stpipe.Spec2Pipeline.photom - INFO - filter: F170LP 2022-10-06 04:25:53,057 - stpipe.Spec2Pipeline.photom - INFO - grating: G235M 2022-10-06 04:25:53,141 - stpipe.Spec2Pipeline.photom - INFO - Working on slit S200A1 2022-10-06 04:25:53,141 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 1 2022-10-06 04:25:53,152 - stpipe.Spec2Pipeline.photom - INFO - Working on slit S200A2 2022-10-06 04:25:53,152 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 1 2022-10-06 04:25:53,163 - stpipe.Spec2Pipeline.photom - INFO - Working on slit S400A1 2022-10-06 04:25:53,164 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 1 2022-10-06 04:25:53,174 - stpipe.Spec2Pipeline.photom - INFO - Working on slit S1600A1 2022-10-06 04:25:53,175 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 1 2022-10-06 04:25:53,189 - stpipe.Spec2Pipeline.photom - INFO - Step photom done 2022-10-06 04:25:53,424 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec running with args (<MultiSlitModel from jwtest1013001_01101_00001_nrs1_cal.fits>,). 2022-10-06 04:25:53,425 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True} 2022-10-06 04:25:53,458 - stpipe.Spec2Pipeline.resample_spec - INFO - No DRIZPARS reffile 2022-10-06 04:25:53,460 - stpipe.Spec2Pipeline.resample_spec - INFO - using: pixfrac=1.0 2022-10-06 04:25:53,460 - stpipe.Spec2Pipeline.resample_spec - INFO - using: kernel='square' 2022-10-06 04:25:53,460 - stpipe.Spec2Pipeline.resample_spec - INFO - using: fillval='INDEF' 2022-10-06 04:25:53,460 - stpipe.Spec2Pipeline.resample_spec - INFO - using: wht_type='ivm' 2022-10-06 04:25:53,460 - stpipe.Spec2Pipeline.resample_spec - INFO - using: pscale_ratio=1.0 2022-10-06 04:25:53,460 - stpipe.Spec2Pipeline.resample_spec - INFO - Reorganizing data from exposure jwtest1013001_01101_00001_nrs1_cal.fits 2022-10-06 04:25:54,336 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter kernal: square 2022-10-06 04:25:54,336 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter pixfrac: 1.0 2022-10-06 04:25:54,336 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter fillval: INDEF 2022-10-06 04:25:54,336 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter weight_type: ivm 2022-10-06 04:25:54,506 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2022-10-06 04:25:54,601 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (46, 1337) --> (36, 1337) 2022-10-06 04:25:54,611 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2022-10-06 04:25:54,704 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (46, 1337) --> (36, 1337) 2022-10-06 04:25:54,716 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2022-10-06 04:25:54,807 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (46, 1337) --> (36, 1337) 2022-10-06 04:25:54,819 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2022-10-06 04:25:54,921 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (46, 1337) --> (36, 1337) 2022-10-06 04:25:54,973 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 6.160506995 -66.584457275 6.307342504 -66.584457275 6.307342504 -66.531277011 6.160506995 -66.531277011 2022-10-06 04:25:55,588 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter kernal: square 2022-10-06 04:25:55,588 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter pixfrac: 1.0 2022-10-06 04:25:55,588 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter fillval: INDEF 2022-10-06 04:25:55,588 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter weight_type: ivm 2022-10-06 04:25:55,757 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2022-10-06 04:25:55,862 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (48, 1435) --> (36, 1435) 2022-10-06 04:25:55,873 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2022-10-06 04:25:55,983 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (48, 1435) --> (36, 1435) 2022-10-06 04:25:55,996 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2022-10-06 04:25:56,099 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (48, 1435) --> (36, 1435) 2022-10-06 04:25:56,111 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2022-10-06 04:25:56,211 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (48, 1435) --> (36, 1435) 2022-10-06 04:25:56,271 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 6.172482850 -66.581607509 6.329000682 -66.581607509 6.329000682 -66.524806106 6.172482850 -66.524806106 2022-10-06 04:25:56,654 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter kernal: square 2022-10-06 04:25:56,654 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter pixfrac: 1.0 2022-10-06 04:25:56,654 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter fillval: INDEF 2022-10-06 04:25:56,654 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter weight_type: ivm 2022-10-06 04:25:56,819 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2022-10-06 04:25:56,924 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (52, 1407) --> (41, 1407) 2022-10-06 04:25:56,937 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2022-10-06 04:25:57,044 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (52, 1407) --> (41, 1407) 2022-10-06 04:25:57,060 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2022-10-06 04:25:57,180 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (52, 1407) --> (41, 1407) 2022-10-06 04:25:57,194 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2022-10-06 04:25:57,301 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (52, 1407) --> (41, 1407) 2022-10-06 04:25:57,361 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 6.167564331 -66.584863097 6.471731294 -66.584863097 6.471731294 -66.474460632 6.167564331 -66.474460632 2022-10-06 04:25:57,670 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter kernal: square 2022-10-06 04:25:57,670 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter pixfrac: 1.0 2022-10-06 04:25:57,670 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter fillval: INDEF 2022-10-06 04:25:57,670 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter weight_type: ivm 2022-10-06 04:25:57,835 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2022-10-06 04:25:57,903 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (29, 1383) --> (19, 1383) 2022-10-06 04:25:57,906 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2022-10-06 04:25:57,974 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (29, 1383) --> (19, 1383) 2022-10-06 04:25:57,980 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2022-10-06 04:25:58,308 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (29, 1383) --> (19, 1383) 2022-10-06 04:25:58,315 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2022-10-06 04:25:58,386 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (29, 1383) --> (19, 1383) 2022-10-06 04:25:58,425 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 4.151890518 -67.530923334 6.721677207 -67.530923334 6.721677207 -66.401640017 4.151890518 -66.401640017 2022-10-06 04:25:59,402 - stpipe.Spec2Pipeline.resample_spec - INFO - Saved model in jwtest1013001_01101_00001_nrs1_s2d.fits 2022-10-06 04:25:59,402 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec done 2022-10-06 04:25:59,619 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d running with args (<MultiSlitModel from jwtest1013001_01101_00001_nrs1_s2d.fits>,). 2022-10-06 04:25:59,620 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None} 2022-10-06 04:25:59,644 - stpipe.Spec2Pipeline.extract_1d - INFO - Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0004.json 2022-10-06 04:25:59,661 - stpipe.Spec2Pipeline.extract_1d - INFO - Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0003.fits 2022-10-06 04:25:59,702 - stpipe.Spec2Pipeline.extract_1d - INFO - Turning on source position correction for exp_type = NRS_FIXEDSLIT 2022-10-06 04:25:59,702 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit S200A1 2022-10-06 04:25:59,702 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2022-10-06 04:25:59,702 - stpipe.Spec2Pipeline.extract_1d - INFO - Can only compute source location for primary NIRSpec slit, 2022-10-06 04:25:59,702 - stpipe.Spec2Pipeline.extract_1d - INFO - so setting use_source_posn to False 2022-10-06 04:25:59,739 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: xstart=0, xstop=1336, ystart=14.5, ystop=20.5 2022-10-06 04:25:59,994 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit S200A2 2022-10-06 04:25:59,994 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2022-10-06 04:25:59,994 - stpipe.Spec2Pipeline.extract_1d - INFO - Can only compute source location for primary NIRSpec slit, 2022-10-06 04:25:59,994 - stpipe.Spec2Pipeline.extract_1d - INFO - so setting use_source_posn to False 2022-10-06 04:26:00,026 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: xstart=0, xstop=1434, ystart=14.5, ystop=20.5 2022-10-06 04:26:00,296 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit S400A1 2022-10-06 04:26:00,296 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2022-10-06 04:26:00,296 - stpipe.Spec2Pipeline.extract_1d - INFO - Can only compute source location for primary NIRSpec slit, 2022-10-06 04:26:00,296 - stpipe.Spec2Pipeline.extract_1d - INFO - so setting use_source_posn to False 2022-10-06 04:26:00,341 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: xstart=0, xstop=1406, ystart=17.0, ystop=23.0 2022-10-06 04:26:00,606 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit S1600A1 2022-10-06 04:26:00,606 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2022-10-06 04:26:00,606 - stpipe.Spec2Pipeline.extract_1d - INFO - Can only compute source location for primary NIRSpec slit, 2022-10-06 04:26:00,606 - stpipe.Spec2Pipeline.extract_1d - INFO - so setting use_source_posn to False 2022-10-06 04:26:00,626 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: xstart=0, xstop=1382, ystart=6.0, ystop=12.0 2022-10-06 04:26:01,050 - stpipe.Spec2Pipeline.extract_1d - INFO - Saved model in jwtest1013001_01101_00001_nrs1_x1d.fits 2022-10-06 04:26:01,051 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d done 2022-10-06 04:26:01,051 - stpipe.Spec2Pipeline - INFO - Finished processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jwtest1013001_01101_00001_nrs1 2022-10-06 04:26:01,051 - stpipe.Spec2Pipeline - INFO - Ending calwebb_spec2 2022-10-06 04:26:01,051 - stpipe.Spec2Pipeline - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:26:02,061 - stpipe.Spec2Pipeline - INFO - Saved model in jwtest1013001_01101_00001_nrs1_cal.fits 2022-10-06 04:26:02,061 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline done -------------------------------Captured log setup------------------------------- INFO stpipe.Spec2Pipeline:step.py:366 Spec2Pipeline instance created. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:366 BackgroundStep instance created. INFO stpipe.Spec2Pipeline.assign_wcs:step.py:366 AssignWcsStep instance created. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:366 ImprintStep instance created. INFO stpipe.Spec2Pipeline.msa_flagging:step.py:366 MSAFlagOpenStep instance created. INFO stpipe.Spec2Pipeline.extract_2d:step.py:366 Extract2dStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos:step.py:366 MasterBackgroundMosStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:step.py:366 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:step.py:366 PathLossStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:step.py:366 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.photom:step.py:366 PhotomStep instance created. INFO stpipe.Spec2Pipeline.wavecorr:step.py:366 WavecorrStep instance created. INFO stpipe.Spec2Pipeline.flat_field:step.py:366 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.srctype:step.py:366 SourceTypeStep instance created. INFO stpipe.Spec2Pipeline.straylight:step.py:366 StraylightStep instance created. INFO stpipe.Spec2Pipeline.fringe:step.py:366 FringeStep instance created. INFO stpipe.Spec2Pipeline.pathloss:step.py:366 PathLossStep instance created. INFO stpipe.Spec2Pipeline.barshadow:step.py:366 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.wfss_contam:step.py:366 WfssContamStep instance created. INFO stpipe.Spec2Pipeline.photom:step.py:366 PhotomStep instance created. INFO stpipe.Spec2Pipeline.resample_spec:step.py:366 ResampleSpecStep instance created. INFO stpipe.Spec2Pipeline.cube_build:step.py:366 CubeBuildStep instance created. INFO stpipe.Spec2Pipeline.extract_1d:step.py:366 Extract1dStep instance created. INFO stpipe.Spec2Pipeline:step.py:430 Step Spec2Pipeline running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jwtest1013001_01101_00001_nrs1_rate.fits',). INFO stpipe.Spec2Pipeline:step.py:434 Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_bsub': False, 'fail_on_exception': True, 'save_wfss_esec': False, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000}, 'master_background_mos': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'source_type': None}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'wfss_contam': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_simulated_image': False, 'save_contam_images': False, 'maximum_cores': 'none'}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'drizzle', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None}}} INFO stpipe.Spec2Pipeline:pipeline.py:358 Prefetching reference files for dataset: 'jwtest1013001_01101_00001_nrs1_rate.fits' reftypes = ['apcorr', 'area', 'barshadow', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'mrsxartcorr', 'msa', 'msaoper', 'ote', 'pathloss', 'photom', 'regions', 'sflat', 'speckernel', 'specprofile', 'spectrace', 'specwcs', 'wavecorr', 'wavelengthrange', 'wavemap', 'wfssbkg'] INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0003.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0026.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for BARSHADOW reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for CUBEPAR reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DISTORTION reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DRIZPARS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0004.json'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0003.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FILTEROFFSET reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FLAT reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FRINGE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for IFUFORE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for IFUPOST reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for IFUSLICER reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for MRSXARTCORR reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0001.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0014.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for REGIONS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0014.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECKERNEL reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECPROFILE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECTRACE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECWCS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0003.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WAVEMAP reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WFSSBKG reference file is 'N/A'. INFO stpipe.Spec2Pipeline:calwebb_spec2.py:92 Starting calwebb_spec2 ... INFO stpipe.Spec2Pipeline:calwebb_spec2.py:110 Processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jwtest1013001_01101_00001_nrs1 INFO stpipe.Spec2Pipeline:calwebb_spec2.py:176 Working on input /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jwtest1013001_01101_00001_nrs1_rate.fits ... DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:347 Science data does not allow direct background subtraction. Skipping "bkg_subtract". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:359 Science data does not allow imprint processing. Skipping "imprint_subtraction". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:365 Science data does not allow MSA flagging. Skipping "msa_flagging". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:370 Science data does not allow stray light correction. Skipping "straylight". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:375 Science data does not allow fringe correction. Skipping "fringe". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:386 Science data does not allow barshadow correction. Skipping "barshadow". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:391 Science data does not allow master background correction. Skipping "master_background_mos". INFO stpipe.Spec2Pipeline.assign_wcs:step.py:430 Step assign_wcs running with args (<ImageModel(256, 2048) from jwtest1013001_01101_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.assign_wcs:step.py:434 Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:80 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:80 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1375 gwa_ytilt is 0.1389586 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1375 gwa_ytilt is 0.1389586 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1376 gwa_xtilt is 0.3212491 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1376 gwa_xtilt is 0.3212491 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1380 theta_y correction: -8.017973385651406e-05 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1380 theta_y correction: -8.017973385651406e-05 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1729 Removing slit S200B1 from the list of open slits because the WCS bounding_box is completely outside the detector. INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1729 Removing slit S200B1 from the list of open slits because the WCS bounding_box is completely outside the detector. INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:424 Slits projected on detector NRS1: ['S200A1', 'S200A2', 'S400A1', 'S1600A1'] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:424 Slits projected on detector NRS1: ['S200A1', 'S200A2', 'S400A1', 'S1600A1'] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:308 Computing WCS for 4 open slitlets INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:308 Computing WCS for 4 open slitlets INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1375 gwa_ytilt is 0.1389586 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1375 gwa_ytilt is 0.1389586 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1376 gwa_xtilt is 0.3212491 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1376 gwa_xtilt is 0.3212491 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1380 theta_y correction: -8.017973385651406e-05 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1380 theta_y correction: -8.017973385651406e-05 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:330 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:330 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 4 open slits in quadrant 5 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 4 open slits in quadrant 5 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:62 Created a NIRSPEC nrs_fixedslit pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:62 Created a NIRSPEC nrs_fixedslit pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} INFO stpipe.Spec2Pipeline.assign_wcs:assign_wcs.py:96 COMPLETED assign_wcs INFO stpipe.Spec2Pipeline.assign_wcs:assign_wcs.py:96 COMPLETED assign_wcs INFO stpipe.Spec2Pipeline.assign_wcs:step.py:1016 Saved model in jwtest1013001_01101_00001_nrs1_assign_wcs.fits INFO stpipe.Spec2Pipeline.assign_wcs:step.py:546 Step assign_wcs done INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:430 Step bkg_subtract running with args (<ImageModel(256, 2048) from jwtest1013001_01101_00001_nrs1_assign_wcs.fits>, []). INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:434 Step bkg_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None} INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:546 Step bkg_subtract done INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:430 Step imprint_subtract running with args (<ImageModel(256, 2048) from jwtest1013001_01101_00001_nrs1_assign_wcs.fits>, []). INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:434 Step imprint_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'} INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:546 Step imprint_subtract done INFO stpipe.Spec2Pipeline.msa_flagging:step.py:430 Step msa_flagging running with args (<ImageModel(256, 2048) from jwtest1013001_01101_00001_nrs1_assign_wcs.fits>,). INFO stpipe.Spec2Pipeline.msa_flagging:step.py:434 Step msa_flagging parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'} INFO stpipe.Spec2Pipeline.msa_flagging:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.msa_flagging:step.py:546 Step msa_flagging done INFO stpipe.Spec2Pipeline.extract_2d:step.py:430 Step extract_2d running with args (<ImageModel(256, 2048) from jwtest1013001_01101_00001_nrs1_assign_wcs.fits>,). INFO stpipe.Spec2Pipeline.extract_2d:step.py:434 Step extract_2d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000} INFO stpipe.Spec2Pipeline.extract_2d:extract_2d.py:61 EXP_TYPE is NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.extract_2d:extract_2d.py:61 EXP_TYPE is NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S200A1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S200A1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 711 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 711 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 159 205 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 159 205 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 6.160418766 -66.583714125 6.162095795 -66.584471478 6.162203945 -66.584433017 6.160526938 -66.583675654 INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 6.160418766 -66.583714125 6.162095795 -66.584471478 6.162203945 -66.584433017 6.160526938 -66.583675654 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 6.160418766 -66.583714125 6.162095795 -66.584471478 6.162203945 -66.584433017 6.160526938 -66.583675654 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 6.160418766 -66.583714125 6.162095795 -66.584471478 6.162203945 -66.584433017 6.160526938 -66.583675654 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S200A2 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S200A2 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 520 1955 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 520 1955 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 122 170 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 122 170 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 6.172397448 -66.580865276 6.174066148 -66.581620581 6.174173384 -66.581582349 6.172504705 -66.580827034 INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 6.172397448 -66.580865276 6.174066148 -66.581620581 6.174173384 -66.581582349 6.172504705 -66.580827034 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 6.172397448 -66.580865276 6.174066148 -66.581620581 6.174173384 -66.581582349 6.172504705 -66.580827034 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 6.172397448 -66.580865276 6.174066148 -66.581620581 6.174173384 -66.581582349 6.172504705 -66.580827034 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S400A1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S400A1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 641 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 641 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 82 134 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 82 134 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 6.167427344 -66.584031436 6.169337167 -66.584894371 6.169548748 -66.584819067 6.167638973 -66.583956111 INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 6.167427344 -66.584031436 6.169337167 -66.584894371 6.169548748 -66.584819067 6.167638973 -66.583956111 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 6.167427344 -66.584031436 6.169337167 -66.584894371 6.169548748 -66.584819067 6.167638973 -66.583956111 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 6.167427344 -66.584031436 6.169337167 -66.584894371 6.169548748 -66.584819067 6.167638973 -66.583956111 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S1600A1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S1600A1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 665 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 665 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 62 91 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 62 91 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 6.167855172 -66.585551195 6.168671819 -66.585919996 6.169510609 -66.585621566 6.168694043 -66.585252730 INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 6.167855172 -66.585551195 6.168671819 -66.585919996 6.169510609 -66.585621566 6.168694043 -66.585252730 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 6.167855172 -66.585551195 6.168671819 -66.585919996 6.169510609 -66.585621566 6.168694043 -66.585252730 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 6.167855172 -66.585551195 6.168671819 -66.585919996 6.169510609 -66.585621566 6.168694043 -66.585252730 INFO stpipe.Spec2Pipeline.extract_2d:step.py:1016 Saved model in jwtest1013001_01101_00001_nrs1_extract_2d.fits INFO stpipe.Spec2Pipeline.extract_2d:step.py:546 Step extract_2d done INFO stpipe.Spec2Pipeline.srctype:step.py:430 Step srctype running with args (<MultiSlitModel from jwtest1013001_01101_00001_nrs1_extract_2d.fits>,). INFO stpipe.Spec2Pipeline.srctype:step.py:434 Step srctype parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'source_type': None} INFO stpipe.Spec2Pipeline.srctype:srctype.py:39 Input EXP_TYPE is NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.srctype:srctype.py:39 Input EXP_TYPE is NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.srctype:srctype.py:62 Input SRCTYAPT = None INFO stpipe.Spec2Pipeline.srctype:srctype.py:62 Input SRCTYAPT = None WARNING stpipe.Spec2Pipeline.srctype:srctype.py:64 SRCTYAPT keyword not found in input; using SRCTYPE instead WARNING stpipe.Spec2Pipeline.srctype:srctype.py:64 SRCTYAPT keyword not found in input; using SRCTYPE instead INFO stpipe.Spec2Pipeline.srctype:srctype.py:119 Input source type is unknown; setting default SRCTYPE = POINT INFO stpipe.Spec2Pipeline.srctype:srctype.py:119 Input source type is unknown; setting default SRCTYPE = POINT DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:137 primary_slit = NONE DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:137 primary_slit = NONE DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:143 slit S200A1 = EXTENDED DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:143 slit S200A1 = EXTENDED DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:143 slit S200A2 = EXTENDED DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:143 slit S200A2 = EXTENDED DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:143 slit S400A1 = EXTENDED DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:143 slit S400A1 = EXTENDED DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:143 slit S1600A1 = EXTENDED DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:143 slit S1600A1 = EXTENDED INFO stpipe.Spec2Pipeline.srctype:step.py:1016 Saved model in jwtest1013001_01101_00001_nrs1_srctype.fits INFO stpipe.Spec2Pipeline.srctype:step.py:546 Step srctype done INFO stpipe.Spec2Pipeline.master_background_mos:step.py:430 Step master_background_mos running with args (<MultiSlitModel from jwtest1013001_01101_00001_nrs1_srctype.fits>,). INFO stpipe.Spec2Pipeline.master_background_mos:step.py:434 Step master_background_mos parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}}} INFO stpipe.Spec2Pipeline.master_background_mos:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.master_background_mos:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Spec2Pipeline.master_background_mos:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Spec2Pipeline.master_background_mos:step.py:546 Step master_background_mos done INFO stpipe.Spec2Pipeline.wavecorr:step.py:430 Step wavecorr running with args (<MultiSlitModel from jwtest1013001_01101_00001_nrs1_srctype.fits>,). INFO stpipe.Spec2Pipeline.wavecorr:step.py:434 Step wavecorr parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'} INFO stpipe.Spec2Pipeline.wavecorr:wavecorr_step.py:56 Using WAVECORR reference file /grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0003.asdf WARNING stpipe.Spec2Pipeline.wavecorr:wavecorr.py:67 Primary slit name not found in input WARNING stpipe.Spec2Pipeline.wavecorr:wavecorr.py:67 Primary slit name not found in input WARNING stpipe.Spec2Pipeline.wavecorr:wavecorr.py:68 Skipping wavecorr correction WARNING stpipe.Spec2Pipeline.wavecorr:wavecorr.py:68 Skipping wavecorr correction INFO stpipe.Spec2Pipeline.wavecorr:step.py:1016 Saved model in jwtest1013001_01101_00001_nrs1_wavecorr.fits INFO stpipe.Spec2Pipeline.wavecorr:step.py:546 Step wavecorr done INFO stpipe.Spec2Pipeline.flat_field:step.py:430 Step flat_field running with args (<MultiSlitModel from jwtest1013001_01101_00001_nrs1_wavecorr.fits>,). INFO stpipe.Spec2Pipeline.flat_field:step.py:434 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:74 Input is MultiSlitModel of exposure type NRS_FIXEDSLIT DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:201 No reference found for type FLAT DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:199 Using FFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_fflat_0003.fits DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:199 Using SFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_sflat_0014.fits DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:199 Using DFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit S200A1 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit S200A1 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 15409 out of 61502 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 15409 out of 61502 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1221 The table wavelength or flat-field data array contained 486 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1221 The table wavelength or flat-field data array contained 486 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 4 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 4 flat-field values <= 0 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit S200A2 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit S200A2 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 19583 out of 68880 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 19583 out of 68880 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 3 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 3 flat-field values <= 0 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit S400A1 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit S400A1 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 17738 out of 73164 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 17738 out of 73164 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1221 The table wavelength or flat-field data array contained 113 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1221 The table wavelength or flat-field data array contained 113 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 5 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 5 flat-field values <= 0 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit S1600A1 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit S1600A1 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 16856 out of 40107 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 16856 out of 40107 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1221 The table wavelength or flat-field data array contained 239 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1221 The table wavelength or flat-field data array contained 239 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 5 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 5 flat-field values <= 0 INFO stpipe.Spec2Pipeline.flat_field:step.py:1016 Saved model in jwtest1013001_01101_00001_nrs1_flat_field.fits INFO stpipe.Spec2Pipeline.flat_field:step.py:546 Step flat_field done INFO stpipe.Spec2Pipeline.pathloss:step.py:430 Step pathloss running with args (<MultiSlitModel from jwtest1013001_01101_00001_nrs1_flat_field.fits>,). INFO stpipe.Spec2Pipeline.pathloss:step.py:434 Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None} INFO stpipe.Spec2Pipeline.pathloss:pathloss_step.py:38 Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0001.fits INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:232 Input exposure type is NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:232 Input exposure type is NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:458 Working on slit S200A1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:458 Working on slit S200A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200A1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:799 Using aperture S200A1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:799 Using aperture S200A1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:458 Working on slit S200A2 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:458 Working on slit S200A2 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200A2 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200A2 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:799 Using aperture S200A2 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:799 Using aperture S200A2 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:458 Working on slit S400A1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:458 Working on slit S400A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200A2 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200A2 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200B1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200B1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S1600A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S1600A1 WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:847 Cannot find matching pathloss model for S400A1 WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:847 Cannot find matching pathloss model for S400A1 WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:848 Skipping pathloss correction for this slit WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:848 Skipping pathloss correction for this slit WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:468 No correction provided for slit 2. Skipping WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:468 No correction provided for slit 2. Skipping INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:458 Working on slit S1600A1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:458 Working on slit S1600A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200A2 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200A2 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200B1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S200B1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S1600A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:83 S1600A1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:799 Using aperture S1600A1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:799 Using aperture S1600A1 INFO stpipe.Spec2Pipeline.pathloss:step.py:1016 Saved model in jwtest1013001_01101_00001_nrs1_pathloss.fits INFO stpipe.Spec2Pipeline.pathloss:step.py:546 Step pathloss done INFO stpipe.Spec2Pipeline.barshadow:step.py:430 Step barshadow running with args (<MultiSlitModel from jwtest1013001_01101_00001_nrs1_pathloss.fits>,). INFO stpipe.Spec2Pipeline.barshadow:step.py:434 Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None} INFO stpipe.Spec2Pipeline.barshadow:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.barshadow:step.py:546 Step barshadow done INFO stpipe.Spec2Pipeline.photom:step.py:430 Step photom running with args (<MultiSlitModel from jwtest1013001_01101_00001_nrs1_pathloss.fits>,). INFO stpipe.Spec2Pipeline.photom:step.py:434 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None} DEBUG stpipe.Spec2Pipeline.photom:photom_step.py:35 Input is MultiSlitModel INFO stpipe.Spec2Pipeline.photom:photom_step.py:55 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0014.fits INFO stpipe.Spec2Pipeline.photom:photom_step.py:56 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0026.fits INFO stpipe.Spec2Pipeline.photom:photom.py:144 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.photom:photom.py:144 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.photom:photom.py:145 detector: NRS1 INFO stpipe.Spec2Pipeline.photom:photom.py:145 detector: NRS1 INFO stpipe.Spec2Pipeline.photom:photom.py:146 exp_type: NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.photom:photom.py:146 exp_type: NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.photom:photom.py:148 filter: F170LP INFO stpipe.Spec2Pipeline.photom:photom.py:148 filter: F170LP INFO stpipe.Spec2Pipeline.photom:photom.py:152 grating: G235M INFO stpipe.Spec2Pipeline.photom:photom.py:152 grating: G235M INFO stpipe.Spec2Pipeline.photom:photom.py:216 Working on slit S200A1 INFO stpipe.Spec2Pipeline.photom:photom.py:216 Working on slit S200A1 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:216 Working on slit S200A2 INFO stpipe.Spec2Pipeline.photom:photom.py:216 Working on slit S200A2 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:216 Working on slit S400A1 INFO stpipe.Spec2Pipeline.photom:photom.py:216 Working on slit S400A1 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:216 Working on slit S1600A1 INFO stpipe.Spec2Pipeline.photom:photom.py:216 Working on slit S1600A1 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:step.py:546 Step photom done INFO stpipe.Spec2Pipeline.resample_spec:step.py:430 Step resample_spec running with args (<MultiSlitModel from jwtest1013001_01101_00001_nrs1_cal.fits>,). INFO stpipe.Spec2Pipeline.resample_spec:step.py:434 Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True} INFO stpipe.Spec2Pipeline.resample_spec:resample_spec_step.py:60 No DRIZPARS reffile INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: pixfrac=1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: pixfrac=1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: kernel='square' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: kernel='square' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: fillval='INDEF' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: fillval='INDEF' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: wht_type='ivm' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: wht_type='ivm' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: pscale_ratio=1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: pscale_ratio=1.0 INFO stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:37 Reorganizing data from exposure jwtest1013001_01101_00001_nrs1_cal.fits INFO stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:37 Reorganizing data from exposure jwtest1013001_01101_00001_nrs1_cal.fits DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 1 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 1 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 2 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 2 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 3 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 3 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 4 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 4 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1336.5), (-0.5, 45.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1336.5), (-0.5, 45.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (46, 1337) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (46, 1337) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (46, 1337) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (46, 1337) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (36, 1337) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (36, 1337) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (46, 1337) --> (36, 1337) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (46, 1337) --> (36, 1337) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1336.5), (-0.5, 45.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1336.5), (-0.5, 45.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (46, 1337) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (46, 1337) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (46, 1337) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (46, 1337) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (36, 1337) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (36, 1337) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (46, 1337) --> (36, 1337) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (46, 1337) --> (36, 1337) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1336.5), (-0.5, 45.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1336.5), (-0.5, 45.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (46, 1337) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (46, 1337) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (46, 1337) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (46, 1337) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (36, 1337) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (36, 1337) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (46, 1337) --> (36, 1337) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (46, 1337) --> (36, 1337) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1336.5), (-0.5, 45.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1336.5), (-0.5, 45.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (46, 1337) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (46, 1337) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (46, 1337) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (46, 1337) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (36, 1337) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (36, 1337) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (46, 1337) --> (36, 1337) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (46, 1337) --> (36, 1337) INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 6.160506995 -66.584457275 6.307342504 -66.584457275 6.307342504 -66.531277011 6.160506995 -66.531277011 INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 6.160506995 -66.584457275 6.307342504 -66.584457275 6.307342504 -66.531277011 6.160506995 -66.531277011 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1434.5), (-0.5, 47.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1434.5), (-0.5, 47.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (48, 1435) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (48, 1435) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (48, 1435) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (48, 1435) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (36, 1435) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (36, 1435) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (48, 1435) --> (36, 1435) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (48, 1435) --> (36, 1435) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1434.5), (-0.5, 47.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1434.5), (-0.5, 47.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (48, 1435) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (48, 1435) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (48, 1435) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (48, 1435) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (36, 1435) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (36, 1435) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (48, 1435) --> (36, 1435) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (48, 1435) --> (36, 1435) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1434.5), (-0.5, 47.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1434.5), (-0.5, 47.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (48, 1435) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (48, 1435) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (48, 1435) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (48, 1435) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (36, 1435) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (36, 1435) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (48, 1435) --> (36, 1435) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (48, 1435) --> (36, 1435) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1434.5), (-0.5, 47.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1434.5), (-0.5, 47.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (48, 1435) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (48, 1435) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (48, 1435) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (48, 1435) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (36, 1435) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (36, 1435) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (48, 1435) --> (36, 1435) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (48, 1435) --> (36, 1435) INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 6.172482850 -66.581607509 6.329000682 -66.581607509 6.329000682 -66.524806106 6.172482850 -66.524806106 INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 6.172482850 -66.581607509 6.329000682 -66.581607509 6.329000682 -66.524806106 6.172482850 -66.524806106 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1406.5), (-0.5, 51.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1406.5), (-0.5, 51.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (52, 1407) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (52, 1407) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (52, 1407) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (52, 1407) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (41, 1407) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (41, 1407) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (52, 1407) --> (41, 1407) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (52, 1407) --> (41, 1407) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1406.5), (-0.5, 51.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1406.5), (-0.5, 51.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (52, 1407) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (52, 1407) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (52, 1407) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (52, 1407) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (41, 1407) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (41, 1407) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (52, 1407) --> (41, 1407) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (52, 1407) --> (41, 1407) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1406.5), (-0.5, 51.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1406.5), (-0.5, 51.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (52, 1407) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (52, 1407) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (52, 1407) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (52, 1407) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (41, 1407) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (41, 1407) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (52, 1407) --> (41, 1407) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (52, 1407) --> (41, 1407) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1406.5), (-0.5, 51.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1406.5), (-0.5, 51.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (52, 1407) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (52, 1407) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (52, 1407) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (52, 1407) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (41, 1407) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (41, 1407) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (52, 1407) --> (41, 1407) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (52, 1407) --> (41, 1407) INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 6.167564331 -66.584863097 6.471731294 -66.584863097 6.471731294 -66.474460632 6.167564331 -66.474460632 INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 6.167564331 -66.584863097 6.471731294 -66.584863097 6.471731294 -66.474460632 6.167564331 -66.474460632 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1382.5), (-0.5, 28.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1382.5), (-0.5, 28.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (29, 1383) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (29, 1383) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (29, 1383) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (29, 1383) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (19, 1383) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (19, 1383) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (29, 1383) --> (19, 1383) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (29, 1383) --> (19, 1383) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1382.5), (-0.5, 28.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1382.5), (-0.5, 28.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (29, 1383) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (29, 1383) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (29, 1383) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (29, 1383) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (19, 1383) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (19, 1383) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (29, 1383) --> (19, 1383) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (29, 1383) --> (19, 1383) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1382.5), (-0.5, 28.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1382.5), (-0.5, 28.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (29, 1383) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (29, 1383) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (29, 1383) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (29, 1383) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (19, 1383) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (19, 1383) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (29, 1383) --> (19, 1383) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (29, 1383) --> (19, 1383) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1382.5), (-0.5, 28.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1382.5), (-0.5, 28.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (29, 1383) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (29, 1383) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (29, 1383) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (29, 1383) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (19, 1383) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (19, 1383) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (29, 1383) --> (19, 1383) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (29, 1383) --> (19, 1383) INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 4.151890518 -67.530923334 6.721677207 -67.530923334 6.721677207 -66.401640017 4.151890518 -66.401640017 INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 4.151890518 -67.530923334 6.721677207 -67.530923334 6.721677207 -66.401640017 4.151890518 -66.401640017 INFO stpipe.Spec2Pipeline.resample_spec:step.py:1016 Saved model in jwtest1013001_01101_00001_nrs1_s2d.fits INFO stpipe.Spec2Pipeline.resample_spec:step.py:546 Step resample_spec done INFO stpipe.Spec2Pipeline.extract_1d:step.py:430 Step extract_1d running with args (<MultiSlitModel from jwtest1013001_01101_00001_nrs1_s2d.fits>,). INFO stpipe.Spec2Pipeline.extract_1d:step.py:434 Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None} DEBUG stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:159 Input is a MultiSlitModel INFO stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:389 Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0004.json INFO stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:397 Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0003.fits INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2780 Turning on source position correction for exp_type = NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2780 Turning on source position correction for exp_type = NRS_FIXEDSLIT DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2805 Input is a MultiSlitModel. DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2805 Input is a MultiSlitModel. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit S200A1 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit S200A1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3620 Can only compute source location for primary NIRSpec slit, INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3620 Can only compute source location for primary NIRSpec slit, INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3621 so setting use_source_posn to False INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3621 so setting use_source_posn to False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[14.0], [21.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[14.0], [21.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1336, ystart=14.5, ystop=20.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1336, ystart=14.5, ystop=20.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit S200A2 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit S200A2 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3620 Can only compute source location for primary NIRSpec slit, INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3620 Can only compute source location for primary NIRSpec slit, INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3621 so setting use_source_posn to False INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3621 so setting use_source_posn to False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[14.0], [21.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[14.0], [21.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1434, ystart=14.5, ystop=20.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1434, ystart=14.5, ystop=20.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit S400A1 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit S400A1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3620 Can only compute source location for primary NIRSpec slit, INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3620 Can only compute source location for primary NIRSpec slit, INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3621 so setting use_source_posn to False INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3621 so setting use_source_posn to False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[16.5], [23.5]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[16.5], [23.5]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1406, ystart=17.0, ystop=23.0 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1406, ystart=17.0, ystop=23.0 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit S1600A1 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit S1600A1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3620 Can only compute source location for primary NIRSpec slit, INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3620 Can only compute source location for primary NIRSpec slit, INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3621 so setting use_source_posn to False INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3621 so setting use_source_posn to False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[5.5], [12.5]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[5.5], [12.5]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1382, ystart=6.0, ystop=12.0 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1382, ystart=6.0, ystop=12.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2952 Not copying from the INT_TIMES table because this is not a TSO exposure. DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2952 Not copying from the INT_TIMES table because this is not a TSO exposure. INFO stpipe.Spec2Pipeline.extract_1d:step.py:1016 Saved model in jwtest1013001_01101_00001_nrs1_x1d.fits INFO stpipe.Spec2Pipeline.extract_1d:step.py:546 Step extract_1d done INFO stpipe.Spec2Pipeline:calwebb_spec2.py:314 Finished processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jwtest1013001_01101_00001_nrs1 INFO stpipe.Spec2Pipeline:calwebb_spec2.py:138 Ending calwebb_spec2 INFO stpipe.Spec2Pipeline:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Spec2Pipeline:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Spec2Pipeline:step.py:1016 Saved model in jwtest1013001_01101_00001_nrs1_cal.fits INFO stpipe.Spec2Pipeline:step.py:546 Step Spec2Pipeline done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[ALLSLITS-subarray-extract_2d] | 0.30 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[ALLSLITS-subarray-wavecorr] | 0.92 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[ALLSLITS-subarray-flat_field] | 0.29 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[ALLSLITS-subarray-pathloss] | 0.37 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[ALLSLITS-subarray-srctype] | 0.32 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[ALLSLITS-subarray-cal] | 0.31 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[ALLSLITS-subarray-x1d] | 0.27 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_pathloss_corrpars | 6.05 | |
|
------------------------------Captured stderr call------------------------------ 2022-10-06 04:26:07,685 - stpipe.PathLossStep - INFO - PathLossStep instance created. 2022-10-06 04:26:08,103 - stpipe.PathLossStep - INFO - Step PathLossStep running with args (<MultiSlitModel from nrs1_flat_field.fits>,). 2022-10-06 04:26:08,104 - stpipe.PathLossStep - INFO - Step PathLossStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} 2022-10-06 04:26:08,155 - stpipe.PathLossStep - INFO - Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0001.fits 2022-10-06 04:26:08,258 - stpipe.PathLossStep - INFO - Input exposure type is NRS_FIXEDSLIT 2022-10-06 04:26:09,759 - stpipe.PathLossStep - INFO - Working on slit S200A1 2022-10-06 04:26:09,760 - stpipe.PathLossStep - INFO - Using aperture S200A1 2022-10-06 04:26:09,798 - stpipe.PathLossStep - INFO - Working on slit S200A2 2022-10-06 04:26:09,799 - stpipe.PathLossStep - INFO - Using aperture S200A2 2022-10-06 04:26:09,835 - stpipe.PathLossStep - INFO - Working on slit S400A1 2022-10-06 04:26:09,836 - stpipe.PathLossStep - WARNING - Cannot find matching pathloss model for S400A1 2022-10-06 04:26:09,836 - stpipe.PathLossStep - WARNING - Skipping pathloss correction for this slit 2022-10-06 04:26:09,836 - stpipe.PathLossStep - WARNING - No correction provided for slit 2. Skipping 2022-10-06 04:26:09,836 - stpipe.PathLossStep - INFO - Working on slit S1600A1 2022-10-06 04:26:09,836 - stpipe.PathLossStep - INFO - Using aperture S1600A1 2022-10-06 04:26:09,870 - stpipe.PathLossStep - INFO - Working on slit S200B1 2022-10-06 04:26:09,871 - stpipe.PathLossStep - INFO - Using aperture S200B1 2022-10-06 04:26:09,904 - stpipe.PathLossStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:26:09,905 - stpipe.PathLossStep - INFO - Step PathLossStep done 2022-10-06 04:26:10,402 - stpipe.PathLossStep - INFO - Step PathLossStep running with args (<MultiSlitModel from nrs1_flat_field.fits>,). 2022-10-06 04:26:10,403 - stpipe.PathLossStep - INFO - Step PathLossStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'pathlossstep', 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} 2022-10-06 04:26:10,411 - stpipe.PathLossStep - INFO - Input exposure type is NRS_FIXEDSLIT 2022-10-06 04:26:11,438 - stpipe.PathLossStep - INFO - Working on slit S200A1 2022-10-06 04:26:11,454 - stpipe.PathLossStep - INFO - Working on slit S200A2 2022-10-06 04:26:11,469 - stpipe.PathLossStep - INFO - Working on slit S400A1 2022-10-06 04:26:11,469 - stpipe.PathLossStep - WARNING - No correction provided for slit 2. Skipping 2022-10-06 04:26:11,470 - stpipe.PathLossStep - INFO - Working on slit S1600A1 2022-10-06 04:26:11,484 - stpipe.PathLossStep - INFO - Working on slit S200B1 2022-10-06 04:26:11,501 - stpipe.PathLossStep - INFO - Step PathLossStep done -------------------------------Captured log call-------------------------------- INFO stpipe.PathLossStep:step.py:366 PathLossStep instance created. INFO stpipe.PathLossStep:step.py:430 Step PathLossStep running with args (<MultiSlitModel from nrs1_flat_field.fits>,). INFO stpipe.PathLossStep:step.py:434 Step PathLossStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} INFO stpipe.PathLossStep:pathloss_step.py:38 Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0001.fits INFO stpipe.PathLossStep:pathloss.py:232 Input exposure type is NRS_FIXEDSLIT INFO stpipe.PathLossStep:pathloss.py:232 Input exposure type is NRS_FIXEDSLIT INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S200A1 INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S200A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A1 INFO stpipe.PathLossStep:pathloss.py:799 Using aperture S200A1 INFO stpipe.PathLossStep:pathloss.py:799 Using aperture S200A1 INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S200A2 INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S200A2 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A2 INFO stpipe.PathLossStep:pathloss.py:799 Using aperture S200A2 INFO stpipe.PathLossStep:pathloss.py:799 Using aperture S200A2 INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S400A1 INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S400A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:83 S200B1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200B1 DEBUG stpipe.PathLossStep:pathloss.py:83 S1600A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S1600A1 WARNING stpipe.PathLossStep:pathloss.py:847 Cannot find matching pathloss model for S400A1 WARNING stpipe.PathLossStep:pathloss.py:847 Cannot find matching pathloss model for S400A1 WARNING stpipe.PathLossStep:pathloss.py:848 Skipping pathloss correction for this slit WARNING stpipe.PathLossStep:pathloss.py:848 Skipping pathloss correction for this slit WARNING stpipe.PathLossStep:pathloss.py:468 No correction provided for slit 2. Skipping WARNING stpipe.PathLossStep:pathloss.py:468 No correction provided for slit 2. Skipping INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S1600A1 INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S1600A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:83 S200B1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200B1 DEBUG stpipe.PathLossStep:pathloss.py:83 S1600A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S1600A1 INFO stpipe.PathLossStep:pathloss.py:799 Using aperture S1600A1 INFO stpipe.PathLossStep:pathloss.py:799 Using aperture S1600A1 INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S200B1 INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S200B1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:83 S200B1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200B1 INFO stpipe.PathLossStep:pathloss.py:799 Using aperture S200B1 INFO stpipe.PathLossStep:pathloss.py:799 Using aperture S200B1 INFO stpipe.PathLossStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.PathLossStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.PathLossStep:step.py:546 Step PathLossStep done INFO stpipe.PathLossStep:step.py:430 Step PathLossStep running with args (<MultiSlitModel from nrs1_flat_field.fits>,). INFO stpipe.PathLossStep:step.py:434 Step PathLossStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'pathlossstep', 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} INFO stpipe.PathLossStep:pathloss.py:232 Input exposure type is NRS_FIXEDSLIT INFO stpipe.PathLossStep:pathloss.py:232 Input exposure type is NRS_FIXEDSLIT INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S200A1 INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S200A1 INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S200A2 INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S200A2 INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S400A1 INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S400A1 WARNING stpipe.PathLossStep:pathloss.py:468 No correction provided for slit 2. Skipping WARNING stpipe.PathLossStep:pathloss.py:468 No correction provided for slit 2. Skipping INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S1600A1 INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S1600A1 INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S200B1 INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S200B1 INFO stpipe.PathLossStep:step.py:546 Step PathLossStep done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_pathloss_inverse | 6.70 | |
|
------------------------------Captured stderr call------------------------------ 2022-10-06 04:26:14,319 - stpipe.PathLossStep - INFO - PathLossStep instance created. 2022-10-06 04:26:14,732 - stpipe.PathLossStep - INFO - Step PathLossStep running with args (<MultiSlitModel from nrs1_flat_field.fits>,). 2022-10-06 04:26:14,733 - stpipe.PathLossStep - INFO - Step PathLossStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} 2022-10-06 04:26:14,762 - stpipe.PathLossStep - INFO - Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0001.fits 2022-10-06 04:26:14,868 - stpipe.PathLossStep - INFO - Input exposure type is NRS_FIXEDSLIT 2022-10-06 04:26:16,305 - stpipe.PathLossStep - INFO - Working on slit S200A1 2022-10-06 04:26:16,305 - stpipe.PathLossStep - INFO - Using aperture S200A1 2022-10-06 04:26:16,343 - stpipe.PathLossStep - INFO - Working on slit S200A2 2022-10-06 04:26:16,343 - stpipe.PathLossStep - INFO - Using aperture S200A2 2022-10-06 04:26:16,380 - stpipe.PathLossStep - INFO - Working on slit S400A1 2022-10-06 04:26:16,380 - stpipe.PathLossStep - WARNING - Cannot find matching pathloss model for S400A1 2022-10-06 04:26:16,381 - stpipe.PathLossStep - WARNING - Skipping pathloss correction for this slit 2022-10-06 04:26:16,381 - stpipe.PathLossStep - WARNING - No correction provided for slit 2. Skipping 2022-10-06 04:26:16,381 - stpipe.PathLossStep - INFO - Working on slit S1600A1 2022-10-06 04:26:16,381 - stpipe.PathLossStep - INFO - Using aperture S1600A1 2022-10-06 04:26:16,417 - stpipe.PathLossStep - INFO - Working on slit S200B1 2022-10-06 04:26:16,418 - stpipe.PathLossStep - INFO - Using aperture S200B1 2022-10-06 04:26:16,452 - stpipe.PathLossStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:26:16,453 - stpipe.PathLossStep - INFO - Step PathLossStep done 2022-10-06 04:26:16,867 - stpipe.PathLossStep - INFO - Step PathLossStep running with args (<MultiSlitModel from nrs1_flat_field.fits>,). 2022-10-06 04:26:16,868 - stpipe.PathLossStep - INFO - Step PathLossStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'pathlossstep', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': None} 2022-10-06 04:26:16,894 - stpipe.PathLossStep - INFO - Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0001.fits 2022-10-06 04:26:16,997 - stpipe.PathLossStep - INFO - Input exposure type is NRS_FIXEDSLIT 2022-10-06 04:26:18,058 - stpipe.PathLossStep - INFO - Working on slit S200A1 2022-10-06 04:26:18,059 - stpipe.PathLossStep - INFO - Using aperture S200A1 2022-10-06 04:26:18,097 - stpipe.PathLossStep - INFO - Working on slit S200A2 2022-10-06 04:26:18,097 - stpipe.PathLossStep - INFO - Using aperture S200A2 2022-10-06 04:26:18,135 - stpipe.PathLossStep - INFO - Working on slit S400A1 2022-10-06 04:26:18,136 - stpipe.PathLossStep - WARNING - Cannot find matching pathloss model for S400A1 2022-10-06 04:26:18,136 - stpipe.PathLossStep - WARNING - Skipping pathloss correction for this slit 2022-10-06 04:26:18,136 - stpipe.PathLossStep - WARNING - No correction provided for slit 2. Skipping 2022-10-06 04:26:18,136 - stpipe.PathLossStep - INFO - Working on slit S1600A1 2022-10-06 04:26:18,137 - stpipe.PathLossStep - INFO - Using aperture S1600A1 2022-10-06 04:26:18,175 - stpipe.PathLossStep - INFO - Working on slit S200B1 2022-10-06 04:26:18,176 - stpipe.PathLossStep - INFO - Using aperture S200B1 2022-10-06 04:26:18,212 - stpipe.PathLossStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:26:18,212 - stpipe.PathLossStep - INFO - Step PathLossStep done -------------------------------Captured log call-------------------------------- INFO stpipe.PathLossStep:step.py:366 PathLossStep instance created. INFO stpipe.PathLossStep:step.py:430 Step PathLossStep running with args (<MultiSlitModel from nrs1_flat_field.fits>,). INFO stpipe.PathLossStep:step.py:434 Step PathLossStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} INFO stpipe.PathLossStep:pathloss_step.py:38 Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0001.fits INFO stpipe.PathLossStep:pathloss.py:232 Input exposure type is NRS_FIXEDSLIT INFO stpipe.PathLossStep:pathloss.py:232 Input exposure type is NRS_FIXEDSLIT INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S200A1 INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S200A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A1 INFO stpipe.PathLossStep:pathloss.py:799 Using aperture S200A1 INFO stpipe.PathLossStep:pathloss.py:799 Using aperture S200A1 INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S200A2 INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S200A2 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A2 INFO stpipe.PathLossStep:pathloss.py:799 Using aperture S200A2 INFO stpipe.PathLossStep:pathloss.py:799 Using aperture S200A2 INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S400A1 INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S400A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:83 S200B1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200B1 DEBUG stpipe.PathLossStep:pathloss.py:83 S1600A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S1600A1 WARNING stpipe.PathLossStep:pathloss.py:847 Cannot find matching pathloss model for S400A1 WARNING stpipe.PathLossStep:pathloss.py:847 Cannot find matching pathloss model for S400A1 WARNING stpipe.PathLossStep:pathloss.py:848 Skipping pathloss correction for this slit WARNING stpipe.PathLossStep:pathloss.py:848 Skipping pathloss correction for this slit WARNING stpipe.PathLossStep:pathloss.py:468 No correction provided for slit 2. Skipping WARNING stpipe.PathLossStep:pathloss.py:468 No correction provided for slit 2. Skipping INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S1600A1 INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S1600A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:83 S200B1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200B1 DEBUG stpipe.PathLossStep:pathloss.py:83 S1600A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S1600A1 INFO stpipe.PathLossStep:pathloss.py:799 Using aperture S1600A1 INFO stpipe.PathLossStep:pathloss.py:799 Using aperture S1600A1 INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S200B1 INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S200B1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:83 S200B1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200B1 INFO stpipe.PathLossStep:pathloss.py:799 Using aperture S200B1 INFO stpipe.PathLossStep:pathloss.py:799 Using aperture S200B1 INFO stpipe.PathLossStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.PathLossStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.PathLossStep:step.py:546 Step PathLossStep done INFO stpipe.PathLossStep:step.py:430 Step PathLossStep running with args (<MultiSlitModel from nrs1_flat_field.fits>,). INFO stpipe.PathLossStep:step.py:434 Step PathLossStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'pathlossstep', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': None} INFO stpipe.PathLossStep:pathloss_step.py:38 Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0001.fits INFO stpipe.PathLossStep:pathloss.py:232 Input exposure type is NRS_FIXEDSLIT INFO stpipe.PathLossStep:pathloss.py:232 Input exposure type is NRS_FIXEDSLIT INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S200A1 INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S200A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A1 INFO stpipe.PathLossStep:pathloss.py:799 Using aperture S200A1 INFO stpipe.PathLossStep:pathloss.py:799 Using aperture S200A1 INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S200A2 INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S200A2 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A2 INFO stpipe.PathLossStep:pathloss.py:799 Using aperture S200A2 INFO stpipe.PathLossStep:pathloss.py:799 Using aperture S200A2 INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S400A1 INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S400A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:83 S200B1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200B1 DEBUG stpipe.PathLossStep:pathloss.py:83 S1600A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S1600A1 WARNING stpipe.PathLossStep:pathloss.py:847 Cannot find matching pathloss model for S400A1 WARNING stpipe.PathLossStep:pathloss.py:847 Cannot find matching pathloss model for S400A1 WARNING stpipe.PathLossStep:pathloss.py:848 Skipping pathloss correction for this slit WARNING stpipe.PathLossStep:pathloss.py:848 Skipping pathloss correction for this slit WARNING stpipe.PathLossStep:pathloss.py:468 No correction provided for slit 2. Skipping WARNING stpipe.PathLossStep:pathloss.py:468 No correction provided for slit 2. Skipping INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S1600A1 INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S1600A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:83 S200B1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200B1 DEBUG stpipe.PathLossStep:pathloss.py:83 S1600A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S1600A1 INFO stpipe.PathLossStep:pathloss.py:799 Using aperture S1600A1 INFO stpipe.PathLossStep:pathloss.py:799 Using aperture S1600A1 INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S200B1 INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S200B1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:83 S200B1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200B1 INFO stpipe.PathLossStep:pathloss.py:799 Using aperture S200B1 INFO stpipe.PathLossStep:pathloss.py:799 Using aperture S200B1 INFO stpipe.PathLossStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.PathLossStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.PathLossStep:step.py:546 Step PathLossStep done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_pathloss_source_type | 4.71 | |
|
------------------------------Captured stderr call------------------------------ 2022-10-06 04:26:20,824 - stpipe.PathLossStep - INFO - PathLossStep instance created. 2022-10-06 04:26:21,184 - stpipe.PathLossStep - INFO - Step PathLossStep running with args (<MultiSlitModel from nrs1_flat_field.fits>,). 2022-10-06 04:26:21,185 - stpipe.PathLossStep - INFO - Step PathLossStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'extended'} 2022-10-06 04:26:21,214 - stpipe.PathLossStep - INFO - Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0001.fits 2022-10-06 04:26:21,319 - stpipe.PathLossStep - INFO - Input exposure type is NRS_FIXEDSLIT 2022-10-06 04:26:22,784 - stpipe.PathLossStep - INFO - Working on slit S200A1 2022-10-06 04:26:22,785 - stpipe.PathLossStep - INFO - Using aperture S200A1 2022-10-06 04:26:22,821 - stpipe.PathLossStep - INFO - Working on slit S200A2 2022-10-06 04:26:22,822 - stpipe.PathLossStep - INFO - Using aperture S200A2 2022-10-06 04:26:22,858 - stpipe.PathLossStep - INFO - Working on slit S400A1 2022-10-06 04:26:22,858 - stpipe.PathLossStep - WARNING - Cannot find matching pathloss model for S400A1 2022-10-06 04:26:22,858 - stpipe.PathLossStep - WARNING - Skipping pathloss correction for this slit 2022-10-06 04:26:22,858 - stpipe.PathLossStep - WARNING - No correction provided for slit 2. Skipping 2022-10-06 04:26:22,858 - stpipe.PathLossStep - INFO - Working on slit S1600A1 2022-10-06 04:26:22,859 - stpipe.PathLossStep - INFO - Using aperture S1600A1 2022-10-06 04:26:22,893 - stpipe.PathLossStep - INFO - Working on slit S200B1 2022-10-06 04:26:22,894 - stpipe.PathLossStep - INFO - Using aperture S200B1 2022-10-06 04:26:22,926 - stpipe.PathLossStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:26:22,926 - stpipe.PathLossStep - INFO - Step PathLossStep done -------------------------------Captured log call-------------------------------- INFO stpipe.PathLossStep:step.py:366 PathLossStep instance created. INFO stpipe.PathLossStep:step.py:430 Step PathLossStep running with args (<MultiSlitModel from nrs1_flat_field.fits>,). INFO stpipe.PathLossStep:step.py:434 Step PathLossStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'extended'} INFO stpipe.PathLossStep:pathloss_step.py:38 Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0001.fits INFO stpipe.PathLossStep:pathloss.py:232 Input exposure type is NRS_FIXEDSLIT INFO stpipe.PathLossStep:pathloss.py:232 Input exposure type is NRS_FIXEDSLIT INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S200A1 INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S200A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A1 INFO stpipe.PathLossStep:pathloss.py:799 Using aperture S200A1 INFO stpipe.PathLossStep:pathloss.py:799 Using aperture S200A1 INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S200A2 INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S200A2 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A2 INFO stpipe.PathLossStep:pathloss.py:799 Using aperture S200A2 INFO stpipe.PathLossStep:pathloss.py:799 Using aperture S200A2 INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S400A1 INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S400A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:83 S200B1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200B1 DEBUG stpipe.PathLossStep:pathloss.py:83 S1600A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S1600A1 WARNING stpipe.PathLossStep:pathloss.py:847 Cannot find matching pathloss model for S400A1 WARNING stpipe.PathLossStep:pathloss.py:847 Cannot find matching pathloss model for S400A1 WARNING stpipe.PathLossStep:pathloss.py:848 Skipping pathloss correction for this slit WARNING stpipe.PathLossStep:pathloss.py:848 Skipping pathloss correction for this slit WARNING stpipe.PathLossStep:pathloss.py:468 No correction provided for slit 2. Skipping WARNING stpipe.PathLossStep:pathloss.py:468 No correction provided for slit 2. Skipping INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S1600A1 INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S1600A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:83 S200B1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200B1 DEBUG stpipe.PathLossStep:pathloss.py:83 S1600A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S1600A1 INFO stpipe.PathLossStep:pathloss.py:799 Using aperture S1600A1 INFO stpipe.PathLossStep:pathloss.py:799 Using aperture S1600A1 INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S200B1 INFO stpipe.PathLossStep:pathloss.py:458 Working on slit S200B1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:83 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:83 S200B1 DEBUG stpipe.PathLossStep:pathloss.py:83 S200B1 INFO stpipe.PathLossStep:pathloss.py:799 Using aperture S200B1 INFO stpipe.PathLossStep:pathloss.py:799 Using aperture S200B1 INFO stpipe.PathLossStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.PathLossStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.PathLossStep:step.py:546 Step PathLossStep done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec3.py::test_nirspec_fs_spec3[cal] | 45.08 | |
|
-----------------------------Captured stderr setup------------------------------ 2022-10-06 04:26:24,456 - stpipe.Spec3Pipeline - INFO - Spec3Pipeline instance created. 2022-10-06 04:26:24,457 - stpipe.Spec3Pipeline.assign_mtwcs - INFO - AssignMTWcsStep instance created. 2022-10-06 04:26:24,458 - stpipe.Spec3Pipeline.master_background - INFO - MasterBackgroundStep instance created. 2022-10-06 04:26:24,458 - stpipe.Spec3Pipeline.mrs_imatch - INFO - MRSIMatchStep instance created. 2022-10-06 04:26:24,459 - stpipe.Spec3Pipeline.outlier_detection - INFO - OutlierDetectionStep instance created. 2022-10-06 04:26:24,460 - stpipe.Spec3Pipeline.resample_spec - INFO - ResampleSpecStep instance created. 2022-10-06 04:26:24,462 - stpipe.Spec3Pipeline.cube_build - INFO - CubeBuildStep instance created. 2022-10-06 04:26:24,463 - stpipe.Spec3Pipeline.extract_1d - INFO - Extract1dStep instance created. 2022-10-06 04:26:24,463 - stpipe.Spec3Pipeline.photom - INFO - PhotomStep instance created. 2022-10-06 04:26:24,464 - stpipe.Spec3Pipeline.combine_1d - INFO - Combine1dStep instance created. 2022-10-06 04:26:24,819 - stpipe.Spec3Pipeline - INFO - Step Spec3Pipeline running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0/jw93045-o010_20180725t035735_spec3_001_asn.json',). 2022-10-06 04:26:24,826 - stpipe.Spec3Pipeline - INFO - Step Spec3Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'steps': {'assign_mtwcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'assign_mtwcs', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0'}, 'master_background': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'user_background': None, 'save_background': False, 'force_subtract': False}, 'mrs_imatch': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'bkg_degree': 1, 'subtract': False}, 'outlier_detection': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'weight_type': 'ivm', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'nlow': 0, 'nhigh': 0, 'maskpt': 0.7, 'grow': 1, 'snr': '5.0 4.0', 'scale': '1.2 0.7', 'backg': 0.0, 'save_intermediate_results': False, 'resample_data': True, 'good_bits': '~DO_NOT_USE', 'scale_detection': False, 'allowed_memory': None, 'in_memory': False}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'drizzle', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'inverse': False, 'source_type': None}, 'combine_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'exptime_key': 'exposure_time'}}} 2022-10-06 04:26:25,269 - stpipe.Spec3Pipeline - INFO - Prefetching reference files for dataset: 'jw93045010001_02103_00001_nrs1_cal.fits' reftypes = ['apcorr', 'area', 'cubepar', 'drizpars', 'extract1d', 'photom', 'speckernel', 'specprofile', 'spectrace', 'wavemap'] 2022-10-06 04:26:25,275 - stpipe.Spec3Pipeline - INFO - Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0003.fits'. 2022-10-06 04:26:25,276 - stpipe.Spec3Pipeline - INFO - Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0027.fits'. 2022-10-06 04:26:25,277 - stpipe.Spec3Pipeline - INFO - Prefetch for CUBEPAR reference file is 'N/A'. 2022-10-06 04:26:25,277 - stpipe.Spec3Pipeline - INFO - Prefetch for DRIZPARS reference file is 'N/A'. 2022-10-06 04:26:25,278 - stpipe.Spec3Pipeline - INFO - Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0004.json'. 2022-10-06 04:26:25,279 - stpipe.Spec3Pipeline - INFO - Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0014.fits'. 2022-10-06 04:26:25,279 - stpipe.Spec3Pipeline - INFO - Prefetch for SPECKERNEL reference file is 'N/A'. 2022-10-06 04:26:25,280 - stpipe.Spec3Pipeline - INFO - Prefetch for SPECPROFILE reference file is 'N/A'. 2022-10-06 04:26:25,280 - stpipe.Spec3Pipeline - INFO - Prefetch for SPECTRACE reference file is 'N/A'. 2022-10-06 04:26:25,280 - stpipe.Spec3Pipeline - INFO - Prefetch for WAVEMAP reference file is 'N/A'. 2022-10-06 04:26:25,280 - stpipe.Spec3Pipeline - INFO - Starting calwebb_spec3 ... 2022-10-06 04:26:28,331 - stpipe.Spec3Pipeline - INFO - Convert from exposure-based to source-based data. 2022-10-06 04:26:28,331 - stpipe.Spec3Pipeline - INFO - Reorganizing data from exposure jw93045010001_02103_00001_nrs1_cal.fits 2022-10-06 04:26:28,462 - stpipe.Spec3Pipeline - INFO - Reorganizing data from exposure jw93045010001_02103_00001_nrs2_cal.fits 2022-10-06 04:26:28,515 - stpipe.Spec3Pipeline - INFO - Reorganizing data from exposure jw93045010001_02101_00001_nrs1_cal.fits 2022-10-06 04:26:28,836 - stpipe.Spec3Pipeline - INFO - Reorganizing data from exposure jw93045010001_02102_00001_nrs1_cal.fits 2022-10-06 04:26:28,890 - stpipe.Spec3Pipeline - INFO - Reorganizing data from exposure jw93045010001_02102_00001_nrs2_cal.fits 2022-10-06 04:26:28,943 - stpipe.Spec3Pipeline - INFO - Reorganizing data from exposure jw93045010001_02101_00001_nrs2_cal.fits 2022-10-06 04:26:31,186 - stpipe.Spec3Pipeline - INFO - Saved model in jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_cal.fits 2022-10-06 04:26:31,482 - stpipe.Spec3Pipeline.outlier_detection - INFO - Step outlier_detection running with args (<SourceModelContainer>,). 2022-10-06 04:26:31,483 - stpipe.Spec3Pipeline.outlier_detection - INFO - Step outlier_detection parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'crf', 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'weight_type': 'ivm', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'nlow': 0, 'nhigh': 0, 'maskpt': 0.7, 'grow': 1, 'snr': '5.0 4.0', 'scale': '1.2 0.7', 'backg': 0.0, 'save_intermediate_results': False, 'resample_data': True, 'good_bits': '~DO_NOT_USE', 'scale_detection': False, 'allowed_memory': None, 'in_memory': False} 2022-10-06 04:26:31,489 - stpipe.Spec3Pipeline.outlier_detection - INFO - Performing outlier detection on 6 inputs 2022-10-06 04:26:32,903 - stpipe.Spec3Pipeline.outlier_detection - INFO - Driz parameter kernal: square 2022-10-06 04:26:32,904 - stpipe.Spec3Pipeline.outlier_detection - INFO - Driz parameter pixfrac: 1.0 2022-10-06 04:26:32,904 - stpipe.Spec3Pipeline.outlier_detection - INFO - Driz parameter fillval: INDEF 2022-10-06 04:26:32,904 - stpipe.Spec3Pipeline.outlier_detection - INFO - Driz parameter weight_type: ivm 2022-10-06 04:26:33,864 - stpipe.Spec3Pipeline.outlier_detection - INFO - 2 exposures to drizzle together 2022-10-06 04:26:34,129 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (57, 1296) --> (42, 3344) 2022-10-06 04:26:34,491 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (59, 2048) --> (42, 3344) 2022-10-06 04:26:35,183 - stpipe.Spec3Pipeline.outlier_detection - INFO - Exposure jw93045010001_02103_00001_nrs1_outlier_i2d.fits saved to file 2022-10-06 04:26:35,187 - stpipe.Spec3Pipeline.outlier_detection - INFO - 3 exposures to drizzle together 2022-10-06 04:26:35,447 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (57, 1296) --> (42, 3344) 2022-10-06 04:26:35,729 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (57, 1296) --> (42, 3344) 2022-10-06 04:26:36,061 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (59, 2048) --> (42, 3344) 2022-10-06 04:26:36,435 - stpipe.Spec3Pipeline.outlier_detection - INFO - Exposure jw93045010001_02101_00001_nrs1_outlier_i2d.fits saved to file 2022-10-06 04:26:36,438 - stpipe.Spec3Pipeline.outlier_detection - INFO - 1 exposures to drizzle together 2022-10-06 04:26:36,749 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (59, 2048) --> (42, 3344) 2022-10-06 04:26:37,129 - stpipe.Spec3Pipeline.outlier_detection - INFO - Exposure jw93045010001_02102_00001_nrs2_outlier_i2d.fits saved to file 2022-10-06 04:26:41,243 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting median... 2022-10-06 04:26:41,603 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (57, 1296) <-- (42, 3344) 2022-10-06 04:26:42,710 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (59, 2048) <-- (42, 3344) 2022-10-06 04:26:43,437 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (57, 1296) <-- (42, 3344) 2022-10-06 04:26:44,496 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (57, 1296) <-- (42, 3344) 2022-10-06 04:26:45,273 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (59, 2048) <-- (42, 3344) 2022-10-06 04:26:46,059 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (59, 2048) <-- (42, 3344) 2022-10-06 04:26:46,801 - stpipe.Spec3Pipeline.outlier_detection - INFO - Flagging outliers 2022-10-06 04:26:47,300 - stpipe.Spec3Pipeline.outlier_detection - INFO - New pixels flagged as outliers: 13 (0.02%) 2022-10-06 04:26:48,156 - stpipe.Spec3Pipeline.outlier_detection - INFO - New pixels flagged as outliers: 11 (0.01%) 2022-10-06 04:26:48,657 - stpipe.Spec3Pipeline.outlier_detection - INFO - New pixels flagged as outliers: 13 (0.02%) 2022-10-06 04:26:49,500 - stpipe.Spec3Pipeline.outlier_detection - INFO - New pixels flagged as outliers: 13 (0.02%) 2022-10-06 04:26:50,007 - stpipe.Spec3Pipeline.outlier_detection - INFO - New pixels flagged as outliers: 19 (0.02%) 2022-10-06 04:26:50,874 - stpipe.Spec3Pipeline.outlier_detection - INFO - New pixels flagged as outliers: 16 (0.01%) 2022-10-06 04:26:53,148 - stpipe.Spec3Pipeline.outlier_detection - INFO - Saved model in jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_crf.fits 2022-10-06 04:26:53,149 - stpipe.Spec3Pipeline.outlier_detection - INFO - Step outlier_detection done 2022-10-06 04:26:53,448 - stpipe.Spec3Pipeline.resample_spec - INFO - Step resample_spec running with args (<SourceModelContainer>,). 2022-10-06 04:26:53,450 - stpipe.Spec3Pipeline.resample_spec - INFO - Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True} 2022-10-06 04:26:53,615 - stpipe.Spec3Pipeline.resample_spec - INFO - No DRIZPARS reffile 2022-10-06 04:26:53,616 - stpipe.Spec3Pipeline.resample_spec - INFO - using: pixfrac=1.0 2022-10-06 04:26:53,616 - stpipe.Spec3Pipeline.resample_spec - INFO - using: kernel='square' 2022-10-06 04:26:53,616 - stpipe.Spec3Pipeline.resample_spec - INFO - using: fillval='INDEF' 2022-10-06 04:26:53,616 - stpipe.Spec3Pipeline.resample_spec - INFO - using: wht_type='ivm' 2022-10-06 04:26:53,616 - stpipe.Spec3Pipeline.resample_spec - INFO - using: pscale_ratio=1.0 2022-10-06 04:26:55,026 - stpipe.Spec3Pipeline.resample_spec - INFO - Driz parameter kernal: square 2022-10-06 04:26:55,026 - stpipe.Spec3Pipeline.resample_spec - INFO - Driz parameter pixfrac: 1.0 2022-10-06 04:26:55,026 - stpipe.Spec3Pipeline.resample_spec - INFO - Driz parameter fillval: INDEF 2022-10-06 04:26:55,026 - stpipe.Spec3Pipeline.resample_spec - INFO - Driz parameter weight_type: ivm 2022-10-06 04:26:55,233 - stpipe.Spec3Pipeline.resample_spec - INFO - Blending metadata for None 2022-10-06 04:26:56,195 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling science data 2022-10-06 04:26:56,299 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (57, 1296) --> (42, 3344) 2022-10-06 04:26:56,469 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (59, 2048) --> (42, 3344) 2022-10-06 04:26:56,591 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (57, 1296) --> (42, 3344) 2022-10-06 04:26:56,707 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (57, 1296) --> (42, 3344) 2022-10-06 04:26:56,874 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (59, 2048) --> (42, 3344) 2022-10-06 04:26:57,055 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (59, 2048) --> (42, 3344) 2022-10-06 04:26:57,076 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling var_rnoise 2022-10-06 04:26:57,179 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (57, 1296) --> (42, 3344) 2022-10-06 04:26:57,348 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (59, 2048) --> (42, 3344) 2022-10-06 04:26:57,472 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (57, 1296) --> (42, 3344) 2022-10-06 04:26:57,584 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (57, 1296) --> (42, 3344) 2022-10-06 04:26:57,757 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (59, 2048) --> (42, 3344) 2022-10-06 04:26:57,937 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (59, 2048) --> (42, 3344) 2022-10-06 04:26:57,959 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling var_poisson 2022-10-06 04:26:58,061 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (57, 1296) --> (42, 3344) 2022-10-06 04:26:58,231 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (59, 2048) --> (42, 3344) 2022-10-06 04:26:58,358 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (57, 1296) --> (42, 3344) 2022-10-06 04:26:58,472 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (57, 1296) --> (42, 3344) 2022-10-06 04:26:59,028 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (59, 2048) --> (42, 3344) 2022-10-06 04:26:59,206 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (59, 2048) --> (42, 3344) 2022-10-06 04:26:59,228 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling var_flat 2022-10-06 04:26:59,331 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (57, 1296) --> (42, 3344) 2022-10-06 04:26:59,500 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (59, 2048) --> (42, 3344) 2022-10-06 04:26:59,624 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (57, 1296) --> (42, 3344) 2022-10-06 04:26:59,737 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (57, 1296) --> (42, 3344) 2022-10-06 04:26:59,904 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (59, 2048) --> (42, 3344) 2022-10-06 04:27:00,082 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (59, 2048) --> (42, 3344) 2022-10-06 04:27:00,197 - stpipe.Spec3Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 79.852544458 -69.680231384 80.488505222 -69.680231384 80.488505222 -69.497865916 79.852544458 -69.497865916 2022-10-06 04:27:00,897 - stpipe.Spec3Pipeline.resample_spec - INFO - Saved model in jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_s2d.fits 2022-10-06 04:27:00,897 - stpipe.Spec3Pipeline.resample_spec - INFO - Step resample_spec done 2022-10-06 04:27:01,218 - stpipe.Spec3Pipeline.extract_1d - INFO - Step extract_1d running with args (<SlitModel(42, 3344) from jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_s2d.fits>,). 2022-10-06 04:27:01,219 - stpipe.Spec3Pipeline.extract_1d - INFO - Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None} 2022-10-06 04:27:01,535 - stpipe.Spec3Pipeline.extract_1d - INFO - Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0004.json 2022-10-06 04:27:01,691 - stpipe.Spec3Pipeline.extract_1d - INFO - Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0003.fits 2022-10-06 04:27:01,734 - stpipe.Spec3Pipeline.extract_1d - INFO - Turning on source position correction for exp_type = NRS_FIXEDSLIT 2022-10-06 04:27:01,734 - stpipe.Spec3Pipeline.extract_1d - INFO - Processing spectral order -1 2022-10-06 04:27:01,826 - stpipe.Spec3Pipeline.extract_1d - INFO - Applying position offset of 1.70 to ystart and ystop 2022-10-06 04:27:01,827 - stpipe.Spec3Pipeline.extract_1d - INFO - Using extraction limits: xstart=0, xstop=3343, ystart=19.201304786973832, ystop=25.201304786973832 2022-10-06 04:27:02,302 - stpipe.Spec3Pipeline.extract_1d - INFO - Applying Aperture correction. 2022-10-06 04:27:07,445 - stpipe.Spec3Pipeline.extract_1d - INFO - Saved model in jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_x1d.fits 2022-10-06 04:27:07,445 - stpipe.Spec3Pipeline.extract_1d - INFO - Step extract_1d done 2022-10-06 04:27:07,445 - stpipe.Spec3Pipeline - INFO - Ending calwebb_spec3 2022-10-06 04:27:07,447 - stpipe.Spec3Pipeline - INFO - Step Spec3Pipeline done -------------------------------Captured log setup------------------------------- INFO stpipe.Spec3Pipeline:step.py:366 Spec3Pipeline instance created. INFO stpipe.Spec3Pipeline.assign_mtwcs:step.py:366 AssignMTWcsStep instance created. INFO stpipe.Spec3Pipeline.master_background:step.py:366 MasterBackgroundStep instance created. INFO stpipe.Spec3Pipeline.mrs_imatch:step.py:366 MRSIMatchStep instance created. INFO stpipe.Spec3Pipeline.outlier_detection:step.py:366 OutlierDetectionStep instance created. INFO stpipe.Spec3Pipeline.resample_spec:step.py:366 ResampleSpecStep instance created. INFO stpipe.Spec3Pipeline.cube_build:step.py:366 CubeBuildStep instance created. INFO stpipe.Spec3Pipeline.extract_1d:step.py:366 Extract1dStep instance created. INFO stpipe.Spec3Pipeline.photom:step.py:366 PhotomStep instance created. INFO stpipe.Spec3Pipeline.combine_1d:step.py:366 Combine1dStep instance created. INFO stpipe.Spec3Pipeline:step.py:430 Step Spec3Pipeline running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0/jw93045-o010_20180725t035735_spec3_001_asn.json',). INFO stpipe.Spec3Pipeline:step.py:434 Step Spec3Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'steps': {'assign_mtwcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'assign_mtwcs', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0'}, 'master_background': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'user_background': None, 'save_background': False, 'force_subtract': False}, 'mrs_imatch': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'bkg_degree': 1, 'subtract': False}, 'outlier_detection': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'weight_type': 'ivm', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'nlow': 0, 'nhigh': 0, 'maskpt': 0.7, 'grow': 1, 'snr': '5.0 4.0', 'scale': '1.2 0.7', 'backg': 0.0, 'save_intermediate_results': False, 'resample_data': True, 'good_bits': '~DO_NOT_USE', 'scale_detection': False, 'allowed_memory': None, 'in_memory': False}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'drizzle', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'inverse': False, 'source_type': None}, 'combine_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'exptime_key': 'exposure_time'}}} INFO stpipe.Spec3Pipeline:pipeline.py:358 Prefetching reference files for dataset: 'jw93045010001_02103_00001_nrs1_cal.fits' reftypes = ['apcorr', 'area', 'cubepar', 'drizpars', 'extract1d', 'photom', 'speckernel', 'specprofile', 'spectrace', 'wavemap'] INFO stpipe.Spec3Pipeline:pipeline.py:366 Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0003.fits'. INFO stpipe.Spec3Pipeline:pipeline.py:366 Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0027.fits'. INFO stpipe.Spec3Pipeline:pipeline.py:366 Prefetch for CUBEPAR reference file is 'N/A'. INFO stpipe.Spec3Pipeline:pipeline.py:366 Prefetch for DRIZPARS reference file is 'N/A'. INFO stpipe.Spec3Pipeline:pipeline.py:366 Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0004.json'. INFO stpipe.Spec3Pipeline:pipeline.py:366 Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0014.fits'. INFO stpipe.Spec3Pipeline:pipeline.py:366 Prefetch for SPECKERNEL reference file is 'N/A'. INFO stpipe.Spec3Pipeline:pipeline.py:366 Prefetch for SPECPROFILE reference file is 'N/A'. INFO stpipe.Spec3Pipeline:pipeline.py:366 Prefetch for SPECTRACE reference file is 'N/A'. INFO stpipe.Spec3Pipeline:pipeline.py:366 Prefetch for WAVEMAP reference file is 'N/A'. INFO stpipe.Spec3Pipeline:calwebb_spec3.py:76 Starting calwebb_spec3 ... INFO stpipe.Spec3Pipeline:calwebb_spec3.py:160 Convert from exposure-based to source-based data. INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw93045010001_02103_00001_nrs1_cal.fits INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw93045010001_02103_00001_nrs1_cal.fits DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 3 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 3 INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw93045010001_02103_00001_nrs2_cal.fits INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw93045010001_02103_00001_nrs2_cal.fits DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 3 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 3 INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw93045010001_02101_00001_nrs1_cal.fits INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw93045010001_02101_00001_nrs1_cal.fits DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 3 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 3 INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw93045010001_02102_00001_nrs1_cal.fits INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw93045010001_02102_00001_nrs1_cal.fits DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 3 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 3 INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw93045010001_02102_00001_nrs2_cal.fits INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw93045010001_02102_00001_nrs2_cal.fits DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 3 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 3 INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw93045010001_02101_00001_nrs2_cal.fits INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw93045010001_02101_00001_nrs2_cal.fits DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 3 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 3 INFO stpipe.Spec3Pipeline:step.py:1016 Saved model in jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_cal.fits INFO stpipe.Spec3Pipeline.outlier_detection:step.py:430 Step outlier_detection running with args (<SourceModelContainer>,). INFO stpipe.Spec3Pipeline.outlier_detection:step.py:434 Step outlier_detection parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'crf', 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'weight_type': 'ivm', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'nlow': 0, 'nhigh': 0, 'maskpt': 0.7, 'grow': 1, 'snr': '5.0 4.0', 'scale': '1.2 0.7', 'backg': 0.0, 'save_intermediate_results': False, 'resample_data': True, 'good_bits': '~DO_NOT_USE', 'scale_detection': False, 'allowed_memory': None, 'in_memory': False} INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection_step.py:194 Performing outlier detection on 6 inputs DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection_step.py:158 Using OutlierDetectionSpec class for outlier_detection DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:177 Defined output product suffix as: _outlier_s2d.fits DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:177 Defined output product suffix as: _outlier_s2d.fits INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:162 2 exposures to drizzle together INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:162 2 exposures to drizzle together DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (42, 3344) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (42, 3344) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (57, 1296) --> (42, 3344) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (57, 1296) --> (42, 3344) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (42, 3344) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (42, 3344) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (59, 2048) --> (42, 3344) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (59, 2048) --> (42, 3344) INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:184 Exposure jw93045010001_02103_00001_nrs1_outlier_i2d.fits saved to file INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:184 Exposure jw93045010001_02103_00001_nrs1_outlier_i2d.fits saved to file INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:162 3 exposures to drizzle together INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:162 3 exposures to drizzle together DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (42, 3344) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (42, 3344) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (57, 1296) --> (42, 3344) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (57, 1296) --> (42, 3344) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (42, 3344) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (42, 3344) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (57, 1296) --> (42, 3344) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (57, 1296) --> (42, 3344) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (42, 3344) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (42, 3344) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (59, 2048) --> (42, 3344) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (59, 2048) --> (42, 3344) INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:184 Exposure jw93045010001_02101_00001_nrs1_outlier_i2d.fits saved to file INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:184 Exposure jw93045010001_02101_00001_nrs1_outlier_i2d.fits saved to file INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:162 1 exposures to drizzle together INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:162 1 exposures to drizzle together DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (42, 3344) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (42, 3344) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (59, 2048) --> (42, 3344) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (59, 2048) --> (42, 3344) INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:184 Exposure jw93045010001_02102_00001_nrs2_outlier_i2d.fits saved to file INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:184 Exposure jw93045010001_02102_00001_nrs2_outlier_i2d.fits saved to file DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:292 Percentage of pixels with low weight: 10.357570061517428 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:292 Percentage of pixels with low weight: 10.357570061517428 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:292 Percentage of pixels with low weight: 10.475763271815904 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:292 Percentage of pixels with low weight: 10.475763271815904 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:292 Percentage of pixels with low weight: 44.57806447938027 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:292 Percentage of pixels with low weight: 44.57806447938027 INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:322 Blotting median... INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:322 Blotting median... DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (57, 1296) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (57, 1296) <-- (42, 3344) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (57, 1296) <-- (42, 3344) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (59, 2048) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (59, 2048) <-- (42, 3344) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (59, 2048) <-- (42, 3344) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (57, 1296) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (57, 1296) <-- (42, 3344) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (57, 1296) <-- (42, 3344) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (57, 1296) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (57, 1296) <-- (42, 3344) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (57, 1296) <-- (42, 3344) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (59, 2048) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (59, 2048) <-- (42, 3344) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (59, 2048) <-- (42, 3344) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (59, 2048) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (59, 2048) <-- (42, 3344) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (59, 2048) <-- (42, 3344) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:372 Flagging outliers INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:372 Flagging outliers INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 13 (0.02%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 13 (0.02%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 11 (0.01%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 11 (0.01%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 13 (0.02%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 13 (0.02%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 13 (0.02%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 13 (0.02%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 19 (0.02%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 19 (0.02%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 16 (0.01%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 16 (0.01%) INFO stpipe.Spec3Pipeline.outlier_detection:step.py:1016 Saved model in jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_crf.fits INFO stpipe.Spec3Pipeline.outlier_detection:step.py:546 Step outlier_detection done INFO stpipe.Spec3Pipeline.resample_spec:step.py:430 Step resample_spec running with args (<SourceModelContainer>,). INFO stpipe.Spec3Pipeline.resample_spec:step.py:434 Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True} INFO stpipe.Spec3Pipeline.resample_spec:resample_spec_step.py:60 No DRIZPARS reffile INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: pixfrac=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: pixfrac=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: kernel='square' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: kernel='square' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: fillval='INDEF' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: fillval='INDEF' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: wht_type='ivm' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: wht_type='ivm' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: pscale_ratio=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: pscale_ratio=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec3Pipeline.resample_spec:resample.py:136 Blending metadata for None INFO stpipe.Spec3Pipeline.resample_spec:resample.py:136 Blending metadata for None INFO stpipe.Spec3Pipeline.resample_spec:resample.py:210 Resampling science data INFO stpipe.Spec3Pipeline.resample_spec:resample.py:210 Resampling science data DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (42, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (57, 1296) --> (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (57, 1296) --> (42, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (42, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (59, 2048) --> (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (59, 2048) --> (42, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (42, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (57, 1296) --> (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (57, 1296) --> (42, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (42, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (57, 1296) --> (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (57, 1296) --> (42, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (42, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (59, 2048) --> (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (59, 2048) --> (42, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (42, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (59, 2048) --> (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (59, 2048) --> (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:263 Resampling var_rnoise INFO stpipe.Spec3Pipeline.resample_spec:resample.py:263 Resampling var_rnoise DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (57, 1296) --> (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (57, 1296) --> (42, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (59, 2048) --> (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (59, 2048) --> (42, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (57, 1296) --> (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (57, 1296) --> (42, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (57, 1296) --> (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (57, 1296) --> (42, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (59, 2048) --> (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (59, 2048) --> (42, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (59, 2048) --> (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (59, 2048) --> (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:263 Resampling var_poisson INFO stpipe.Spec3Pipeline.resample_spec:resample.py:263 Resampling var_poisson DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (57, 1296) --> (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (57, 1296) --> (42, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (59, 2048) --> (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (59, 2048) --> (42, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (57, 1296) --> (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (57, 1296) --> (42, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (57, 1296) --> (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (57, 1296) --> (42, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (59, 2048) --> (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (59, 2048) --> (42, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (59, 2048) --> (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (59, 2048) --> (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:263 Resampling var_flat INFO stpipe.Spec3Pipeline.resample_spec:resample.py:263 Resampling var_flat DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (57, 1296) --> (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (57, 1296) --> (42, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (59, 2048) --> (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (59, 2048) --> (42, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (57, 1296) --> (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (57, 1296) --> (42, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (57, 1296) --> (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (57, 1296) --> (42, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (59, 2048) --> (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (59, 2048) --> (42, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (59, 2048) --> (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (59, 2048) --> (42, 3344) INFO stpipe.Spec3Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 79.852544458 -69.680231384 80.488505222 -69.680231384 80.488505222 -69.497865916 79.852544458 -69.497865916 INFO stpipe.Spec3Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 79.852544458 -69.680231384 80.488505222 -69.680231384 80.488505222 -69.497865916 79.852544458 -69.497865916 INFO stpipe.Spec3Pipeline.resample_spec:step.py:1016 Saved model in jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_s2d.fits INFO stpipe.Spec3Pipeline.resample_spec:step.py:546 Step resample_spec done INFO stpipe.Spec3Pipeline.extract_1d:step.py:430 Step extract_1d running with args (<SlitModel(42, 3344) from jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_s2d.fits>,). INFO stpipe.Spec3Pipeline.extract_1d:step.py:434 Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None} DEBUG stpipe.Spec3Pipeline.extract_1d:extract_1d_step.py:167 Input is a SlitModel INFO stpipe.Spec3Pipeline.extract_1d:extract_1d_step.py:389 Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0004.json INFO stpipe.Spec3Pipeline.extract_1d:extract_1d_step.py:397 Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0003.fits INFO stpipe.Spec3Pipeline.extract_1d:extract.py:2780 Turning on source position correction for exp_type = NRS_FIXEDSLIT INFO stpipe.Spec3Pipeline.extract_1d:extract.py:2780 Turning on source position correction for exp_type = NRS_FIXEDSLIT INFO stpipe.Spec3Pipeline.extract_1d:extract.py:2917 Processing spectral order -1 INFO stpipe.Spec3Pipeline.extract_1d:extract.py:2917 Processing spectral order -1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:447 extract_width = 7 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:447 extract_width = 7 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:454 use_source_posn = True DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:454 use_source_posn = True DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1301 Spectrum location from WCS used column/row 1671 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1301 Spectrum location from WCS used column/row 1671 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1311 Target spectrum is at 22.20 in the cross-dispersion direction DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1311 Target spectrum is at 22.20 in the cross-dispersion direction DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1314 and the nominal XD location of the spectrum is 20.50 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1314 and the nominal XD location of the spectrum is 20.50 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:3400 Computed source offset=1.70, source location=22.20 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:3400 Computed source offset=1.70, source location=22.20 INFO stpipe.Spec3Pipeline.extract_1d:extract.py:1608 Applying position offset of 1.70 to ystart and ystop INFO stpipe.Spec3Pipeline.extract_1d:extract.py:1608 Applying position offset of 1.70 to ystart and ystop DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1656 position_correction = 1.7013047869738323 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1656 position_correction = 1.7013047869738323 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[18.701304786973832], [25.701304786973832]] DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[18.701304786973832], [25.701304786973832]] INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=3343, ystart=19.201304786973832, ystop=25.201304786973832 INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=3343, ystart=19.201304786973832, ystop=25.201304786973832 INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3770 Applying Aperture correction. INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3770 Applying Aperture correction. DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:2952 Not copying from the INT_TIMES table because this is not a TSO exposure. DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:2952 Not copying from the INT_TIMES table because this is not a TSO exposure. INFO stpipe.Spec3Pipeline.extract_1d:step.py:1016 Saved model in jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_x1d.fits INFO stpipe.Spec3Pipeline.extract_1d:step.py:546 Step extract_1d done INFO stpipe.Spec3Pipeline:calwebb_spec3.py:280 Ending calwebb_spec3 INFO stpipe.Spec3Pipeline:step.py:546 Step Spec3Pipeline done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_fs_spec3.py::test_nirspec_fs_spec3[crf] | 0.56 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_ifu_internal_cal.py::test_cube_build_nirspec_internal_cal | 134.47 | |
|
------------------------------Captured stderr call------------------------------ 2022-10-06 04:27:13,991 - stpipe.CubeBuildStep - INFO - CubeBuildStep instance created. 2022-10-06 04:27:14,346 - stpipe.CubeBuildStep - INFO - Step CubeBuildStep running with args ('jwdata0010010_11010_NRS1_cal.fits',). 2022-10-06 04:27:14,347 - stpipe.CubeBuildStep - INFO - Step CubeBuildStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'drizzle', 'coord_system': 'internal_cal', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'skip_dqflagging': False} 2022-10-06 04:27:14,348 - stpipe.CubeBuildStep - INFO - Starting IFU Cube Building Step 2022-10-06 04:27:14,348 - stpipe.CubeBuildStep - INFO - Input interpolation: area 2022-10-06 04:27:14,348 - stpipe.CubeBuildStep - INFO - Coordinate system to use: internal_cal 2022-10-06 04:27:17,391 - stpipe.CubeBuildStep - INFO - Reading cube parameter file /grp/crds/cache/references/jwst/jwst_nirspec_cubepar_0003.fits 2022-10-06 04:27:18,365 - stpipe.CubeBuildStep - INFO - Output Cubes are single grating, single filter IFU Cubes 2022-10-06 04:27:18,365 - stpipe.CubeBuildStep - INFO - Number of IFU cubes produced by this run = 1 2022-10-06 04:27:18,369 - stpipe.CubeBuildStep - INFO - Mapping all pixels to output to determine IFU foot print 2022-10-06 04:27:18,369 - stpipe.CubeBuildStep - INFO - Looping over slices to determine cube size 2022-10-06 04:28:19,146 - stpipe.CubeBuildStep - INFO - Across slice scale 0.10000000149011612 2022-10-06 04:28:19,146 - stpipe.CubeBuildStep - INFO - Changed the across slice scale dimension so we have 1-1 mapping between b and slice # 2022-10-06 04:28:19,146 - stpipe.CubeBuildStep - INFO - New across slice Scale 0.000773333323498567 2022-10-06 04:28:19,146 - stpipe.CubeBuildStep - INFO - Cube Geometry: 2022-10-06 04:28:19,146 - stpipe.CubeBuildStep - INFO - axis# Naxis CRPIX CRVAL CDELT(arcsec) Min & Max (xi, eta arcsec) 2022-10-06 04:28:19,146 - stpipe.CubeBuildStep - INFO - Axis 1 30 0.50 -0.01160000 0.00077333 -0.00734667 0.00734667 2022-10-06 04:28:19,147 - stpipe.CubeBuildStep - INFO - Axis 2 19 0.50 -0.00734667 0.00077333 -0.01160000 0.01160000 2022-10-06 04:28:19,147 - stpipe.CubeBuildStep - INFO - axis# Naxis CRPIX CRVAL CDELT(microns) Min & Max (microns) 2022-10-06 04:28:19,147 - stpipe.CubeBuildStep - INFO - Axis 3 972 1.00 0.54308405 0.00500000 0.54058405 5.40058395 2022-10-06 04:28:19,147 - stpipe.CubeBuildStep - INFO - Cube covers grating, filter: prism, clear 2022-10-06 04:28:19,147 - stpipe.CubeBuildStep - INFO - Output Name: jwdata0010010_11010_NRS1_prism-clear_internal_s3d.fits 2022-10-06 04:29:23,247 - stpipe.CubeBuildStep - INFO - Average # of holes/wavelength plane is < 1 2022-10-06 04:29:23,247 - stpipe.CubeBuildStep - INFO - Total # of holes for IFU cube is : 0 2022-10-06 04:29:23,248 - stpipe.CubeBuildStep - INFO - Number of wavelength planes removed with no data: 29 2022-10-06 04:29:23,342 - stpipe.CubeBuildStep - INFO - Update S_REGION to POLYGON ICRS -0.000006337 0.000000107 -0.000006337 0.000003974 -0.000000107 0.000003974 -0.000000107 0.000000107 2022-10-06 04:29:23,347 - stpipe.CubeBuildStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:29:23,449 - stpipe.CubeBuildStep - INFO - Saved model in jwdata0010010_11010_NRS1_prism-clear_internal_s3d.fits 2022-10-06 04:29:23,450 - stpipe.CubeBuildStep - INFO - Step CubeBuildStep done -------------------------------Captured log call-------------------------------- INFO stpipe.CubeBuildStep:step.py:366 CubeBuildStep instance created. INFO stpipe.CubeBuildStep:step.py:430 Step CubeBuildStep running with args ('jwdata0010010_11010_NRS1_cal.fits',). INFO stpipe.CubeBuildStep:step.py:434 Step CubeBuildStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'drizzle', 'coord_system': 'internal_cal', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'skip_dqflagging': False} INFO stpipe.CubeBuildStep:cube_build_step.py:72 Starting IFU Cube Building Step INFO stpipe.CubeBuildStep:cube_build_step.py:137 Input interpolation: area INFO stpipe.CubeBuildStep:cube_build_step.py:138 Coordinate system to use: internal_cal INFO stpipe.CubeBuildStep:cube_build.py:105 Reading cube parameter file /grp/crds/cache/references/jwst/jwst_nirspec_cubepar_0003.fits INFO stpipe.CubeBuildStep:cube_build.py:105 Reading cube parameter file /grp/crds/cache/references/jwst/jwst_nirspec_cubepar_0003.fits INFO stpipe.CubeBuildStep:cube_build.py:381 Output Cubes are single grating, single filter IFU Cubes INFO stpipe.CubeBuildStep:cube_build.py:381 Output Cubes are single grating, single filter IFU Cubes INFO stpipe.CubeBuildStep:cube_build_step.py:274 Number of IFU cubes produced by this run = 1 DEBUG stpipe.CubeBuildStep:ifu_cube.py:1242 Number of bands in cube: 1 DEBUG stpipe.CubeBuildStep:ifu_cube.py:1242 Number of bands in cube: 1 DEBUG stpipe.CubeBuildStep:ifu_cube.py:1247 Working on data from prism, clear DEBUG stpipe.CubeBuildStep:ifu_cube.py:1247 Working on data from prism, clear DEBUG stpipe.CubeBuildStep:ifu_cube.py:1249 number of files 1 DEBUG stpipe.CubeBuildStep:ifu_cube.py:1249 number of files 1 INFO stpipe.CubeBuildStep:ifu_cube.py:1292 Mapping all pixels to output to determine IFU foot print INFO stpipe.CubeBuildStep:ifu_cube.py:1292 Mapping all pixels to output to determine IFU foot print INFO stpipe.CubeBuildStep:cube_build_wcs_util.py:156 Looping over slices to determine cube size INFO stpipe.CubeBuildStep:cube_build_wcs_util.py:156 Looping over slices to determine cube size DEBUG stpipe.CubeBuildStep:ifu_cube.py:1332 final a and b:(-0.006599965032897222, -0.011599999852478504, 0.0065999981417924, 0.011599999852478504) DEBUG stpipe.CubeBuildStep:ifu_cube.py:1332 final a and b:(-0.006599965032897222, -0.011599999852478504, 0.0065999981417924, 0.011599999852478504) DEBUG stpipe.CubeBuildStep:ifu_cube.py:1333 final wave: (0.5408514611290263, 5.400316538525457) DEBUG stpipe.CubeBuildStep:ifu_cube.py:1333 final wave: (0.5408514611290263, 5.400316538525457) INFO stpipe.CubeBuildStep:ifu_cube.py:1359 Across slice scale 0.10000000149011612 INFO stpipe.CubeBuildStep:ifu_cube.py:1359 Across slice scale 0.10000000149011612 INFO stpipe.CubeBuildStep:ifu_cube.py:1362 Changed the across slice scale dimension so we have 1-1 mapping between b and slice # INFO stpipe.CubeBuildStep:ifu_cube.py:1362 Changed the across slice scale dimension so we have 1-1 mapping between b and slice # INFO stpipe.CubeBuildStep:ifu_cube.py:1363 New across slice Scale 0.000773333323498567 INFO stpipe.CubeBuildStep:ifu_cube.py:1363 New across slice Scale 0.000773333323498567 INFO stpipe.CubeBuildStep:ifu_cube.py:472 Cube Geometry: INFO stpipe.CubeBuildStep:ifu_cube.py:472 Cube Geometry: INFO stpipe.CubeBuildStep:ifu_cube.py:476 axis# Naxis CRPIX CRVAL CDELT(arcsec) Min & Max (xi, eta arcsec) INFO stpipe.CubeBuildStep:ifu_cube.py:476 axis# Naxis CRPIX CRVAL CDELT(arcsec) Min & Max (xi, eta arcsec) INFO stpipe.CubeBuildStep:ifu_cube.py:477 Axis 1 30 0.50 -0.01160000 0.00077333 -0.00734667 0.00734667 INFO stpipe.CubeBuildStep:ifu_cube.py:477 Axis 1 30 0.50 -0.01160000 0.00077333 -0.00734667 0.00734667 INFO stpipe.CubeBuildStep:ifu_cube.py:480 Axis 2 19 0.50 -0.00734667 0.00077333 -0.01160000 0.01160000 INFO stpipe.CubeBuildStep:ifu_cube.py:480 Axis 2 19 0.50 -0.00734667 0.00077333 -0.01160000 0.01160000 INFO stpipe.CubeBuildStep:ifu_cube.py:484 axis# Naxis CRPIX CRVAL CDELT(microns) Min & Max (microns) INFO stpipe.CubeBuildStep:ifu_cube.py:484 axis# Naxis CRPIX CRVAL CDELT(microns) Min & Max (microns) INFO stpipe.CubeBuildStep:ifu_cube.py:485 Axis 3 972 1.00 0.54308405 0.00500000 0.54058405 5.40058395 INFO stpipe.CubeBuildStep:ifu_cube.py:485 Axis 3 972 1.00 0.54308405 0.00500000 0.54058405 5.40058395 INFO stpipe.CubeBuildStep:ifu_cube.py:512 Cube covers grating, filter: prism, clear INFO stpipe.CubeBuildStep:ifu_cube.py:512 Cube covers grating, filter: prism, clear INFO stpipe.CubeBuildStep:ifu_cube.py:227 Output Name: jwdata0010010_11010_NRS1_prism-clear_internal_s3d.fits INFO stpipe.CubeBuildStep:ifu_cube.py:227 Output Name: jwdata0010010_11010_NRS1_prism-clear_internal_s3d.fits DEBUG stpipe.CubeBuildStep:ifu_cube.py:573 Working on Band defined by: prism clear DEBUG stpipe.CubeBuildStep:ifu_cube.py:573 Working on Band defined by: prism clear INFO stpipe.CubeBuildStep:ifu_cube.py:2054 Average # of holes/wavelength plane is < 1 INFO stpipe.CubeBuildStep:ifu_cube.py:2054 Average # of holes/wavelength plane is < 1 INFO stpipe.CubeBuildStep:ifu_cube.py:2057 Total # of holes for IFU cube is : 0 INFO stpipe.CubeBuildStep:ifu_cube.py:2057 Total # of holes for IFU cube is : 0 INFO stpipe.CubeBuildStep:ifu_cube.py:2146 Number of wavelength planes removed with no data: 29 INFO stpipe.CubeBuildStep:ifu_cube.py:2146 Number of wavelength planes removed with no data: 29 DEBUG stpipe.CubeBuildStep:cube_build_step.py:340 Time to build all cubes 124.97171592712402 INFO stpipe.CubeBuildStep:util.py:1060 Update S_REGION to POLYGON ICRS -0.000006337 0.000000107 -0.000006337 0.000003974 -0.000000107 0.000003974 -0.000000107 0.000000107 INFO stpipe.CubeBuildStep:util.py:1060 Update S_REGION to POLYGON ICRS -0.000006337 0.000000107 -0.000006337 0.000003974 -0.000000107 0.000003974 -0.000000107 0.000000107 INFO stpipe.CubeBuildStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.CubeBuildStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.CubeBuildStep:step.py:1016 Saved model in jwdata0010010_11010_NRS1_prism-clear_internal_s3d.fits INFO stpipe.CubeBuildStep:step.py:546 Step CubeBuildStep done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_image2.py::test_nirspec_image2 | 10.49 | |
|
------------------------------Captured stderr call------------------------------ 2022-10-06 04:31:04,651 - stpipe.Image2Pipeline - INFO - Image2Pipeline instance created. 2022-10-06 04:31:04,652 - stpipe.Image2Pipeline.bkg_subtract - INFO - BackgroundStep instance created. 2022-10-06 04:31:04,653 - stpipe.Image2Pipeline.assign_wcs - INFO - AssignWcsStep instance created. 2022-10-06 04:31:04,654 - stpipe.Image2Pipeline.flat_field - INFO - FlatFieldStep instance created. 2022-10-06 04:31:04,655 - stpipe.Image2Pipeline.photom - INFO - PhotomStep instance created. 2022-10-06 04:31:04,656 - stpipe.Image2Pipeline.resample - INFO - ResampleStep instance created. 2022-10-06 04:31:06,067 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20/jw84600010001_02102_00001_nrs2_rate.fits',). 2022-10-06 04:31:06,071 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20', 'save_bsub': False, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20', 'inverse': False, 'source_type': None}, 'resample': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True}}} 2022-10-06 04:31:06,291 - stpipe.Image2Pipeline - INFO - Prefetching reference files for dataset: 'jw84600010001_02102_00001_nrs2_rate.fits' reftypes = ['area', 'camera', 'collimator', 'dflat', 'disperser', 'distortion', 'drizpars', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'ote', 'photom', 'regions', 'sflat', 'specwcs', 'wavelengthrange', 'wfssbkg'] 2022-10-06 04:31:06,305 - stpipe.Image2Pipeline - INFO - Prefetch for AREA reference file is 'N/A'. 2022-10-06 04:31:06,305 - stpipe.Image2Pipeline - INFO - Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. 2022-10-06 04:31:06,306 - stpipe.Image2Pipeline - INFO - Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. 2022-10-06 04:31:06,307 - stpipe.Image2Pipeline - INFO - Prefetch for DFLAT reference file is 'N/A'. 2022-10-06 04:31:06,307 - stpipe.Image2Pipeline - INFO - Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0038.asdf'. 2022-10-06 04:31:06,308 - stpipe.Image2Pipeline - INFO - Prefetch for DISTORTION reference file is 'N/A'. 2022-10-06 04:31:06,308 - stpipe.Image2Pipeline - INFO - Prefetch for DRIZPARS reference file is 'N/A'. 2022-10-06 04:31:06,308 - stpipe.Image2Pipeline - INFO - Prefetch for FFLAT reference file is 'N/A'. 2022-10-06 04:31:06,308 - stpipe.Image2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is 'N/A'. 2022-10-06 04:31:06,308 - stpipe.Image2Pipeline - INFO - Prefetch for FLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_flat_0066.fits'. 2022-10-06 04:31:06,309 - stpipe.Image2Pipeline - INFO - Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0023.asdf'. 2022-10-06 04:31:06,310 - stpipe.Image2Pipeline - INFO - Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. 2022-10-06 04:31:06,311 - stpipe.Image2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'. 2022-10-06 04:31:06,311 - stpipe.Image2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'. 2022-10-06 04:31:06,311 - stpipe.Image2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'. 2022-10-06 04:31:06,311 - stpipe.Image2Pipeline - INFO - Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. 2022-10-06 04:31:06,312 - stpipe.Image2Pipeline - INFO - Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. 2022-10-06 04:31:06,313 - stpipe.Image2Pipeline - INFO - Prefetch for PHOTOM reference file is 'N/A'. 2022-10-06 04:31:06,313 - stpipe.Image2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'. 2022-10-06 04:31:06,313 - stpipe.Image2Pipeline - INFO - Prefetch for SFLAT reference file is 'N/A'. 2022-10-06 04:31:06,313 - stpipe.Image2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'. 2022-10-06 04:31:06,314 - stpipe.Image2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. 2022-10-06 04:31:06,314 - stpipe.Image2Pipeline - INFO - Prefetch for WFSSBKG reference file is 'N/A'. 2022-10-06 04:31:06,315 - stpipe.Image2Pipeline - INFO - Starting calwebb_image2 ... 2022-10-06 04:31:06,315 - stpipe.Image2Pipeline - INFO - Processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20/jw84600010001_02102_00001_nrs2 2022-10-06 04:31:06,315 - stpipe.Image2Pipeline - INFO - Working on input /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20/jw84600010001_02102_00001_nrs2_rate.fits ... 2022-10-06 04:31:06,934 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(2048, 2048) from jw84600010001_02102_00001_nrs2_rate.fits>,). 2022-10-06 04:31:06,936 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} 2022-10-06 04:31:07,103 - stpipe.Image2Pipeline.assign_wcs - INFO - gwa_ytilt is 0.196992189 deg 2022-10-06 04:31:07,103 - stpipe.Image2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.344913125 deg 2022-10-06 04:31:07,103 - stpipe.Image2Pipeline.assign_wcs - INFO - theta_y correction: 0.0016337351377937479 deg 2022-10-06 04:31:07,105 - stpipe.Image2Pipeline.assign_wcs - INFO - theta_x correction: 0.00011189912410338978 deg 2022-10-06 04:31:07,352 - stpipe.Image2Pipeline.assign_wcs - INFO - Created a NIRSPEC nrs_confirm pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0038.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0023.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} 2022-10-06 04:31:07,555 - stpipe.Image2Pipeline.assign_wcs - INFO - Update S_REGION to POLYGON ICRS 6.082169507 -66.574485311 6.182816799 -66.619097807 6.295411405 -66.579726772 6.191732685 -66.535860807 2022-10-06 04:31:07,556 - stpipe.Image2Pipeline.assign_wcs - INFO - assign_wcs updated S_REGION to POLYGON ICRS 6.082169507 -66.574485311 6.182816799 -66.619097807 6.295411405 -66.579726772 6.191732685 -66.535860807 2022-10-06 04:31:07,556 - stpipe.Image2Pipeline.assign_wcs - INFO - COMPLETED assign_wcs 2022-10-06 04:31:07,563 - stpipe.Image2Pipeline.assign_wcs - WARNING - Failed to update 'meta.wcsinfo' with FITS SIP approximation. Reported error is: 2022-10-06 04:31:07,563 - stpipe.Image2Pipeline.assign_wcs - WARNING - "A bounding_box is needed to proceed." 2022-10-06 04:31:07,576 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs done 2022-10-06 04:31:07,778 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field running with args (<ImageModel(2048, 2048) from jw84600010001_02102_00001_nrs2_rate.fits>,). 2022-10-06 04:31:07,779 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2022-10-06 04:31:10,177 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field done 2022-10-06 04:31:10,517 - stpipe.Image2Pipeline.photom - INFO - Step photom running with args (<ImageModel(2048, 2048) from jw84600010001_02102_00001_nrs2_rate.fits>,). 2022-10-06 04:31:10,518 - stpipe.Image2Pipeline.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20', 'inverse': False, 'source_type': None} 2022-10-06 04:31:10,542 - stpipe.Image2Pipeline.photom - INFO - Using photom reference file: N/A 2022-10-06 04:31:10,542 - stpipe.Image2Pipeline.photom - INFO - Using area reference file: N/A 2022-10-06 04:31:10,542 - stpipe.Image2Pipeline.photom - WARNING - No PHOTOM reference file found 2022-10-06 04:31:10,542 - stpipe.Image2Pipeline.photom - WARNING - Photom step will be skipped 2022-10-06 04:31:10,811 - stpipe.Image2Pipeline.photom - INFO - Step photom done 2022-10-06 04:31:10,811 - stpipe.Image2Pipeline - INFO - Finished processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20/jw84600010001_02102_00001_nrs2 2022-10-06 04:31:10,812 - stpipe.Image2Pipeline - INFO - ... ending calwebb_image2 2022-10-06 04:31:10,812 - stpipe.Image2Pipeline - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:31:11,198 - stpipe.Image2Pipeline - INFO - Saved model in jw84600010001_02102_00001_nrs2_cal.fits 2022-10-06 04:31:11,198 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline done -------------------------------Captured log call-------------------------------- INFO stpipe.Image2Pipeline:step.py:366 Image2Pipeline instance created. INFO stpipe.Image2Pipeline.bkg_subtract:step.py:366 BackgroundStep instance created. INFO stpipe.Image2Pipeline.assign_wcs:step.py:366 AssignWcsStep instance created. INFO stpipe.Image2Pipeline.flat_field:step.py:366 FlatFieldStep instance created. INFO stpipe.Image2Pipeline.photom:step.py:366 PhotomStep instance created. INFO stpipe.Image2Pipeline.resample:step.py:366 ResampleStep instance created. INFO stpipe.Image2Pipeline:step.py:430 Step Image2Pipeline running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20/jw84600010001_02102_00001_nrs2_rate.fits',). INFO stpipe.Image2Pipeline:step.py:434 Step Image2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20', 'save_bsub': False, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20', 'inverse': False, 'source_type': None}, 'resample': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True}}} INFO stpipe.Image2Pipeline:pipeline.py:358 Prefetching reference files for dataset: 'jw84600010001_02102_00001_nrs2_rate.fits' reftypes = ['area', 'camera', 'collimator', 'dflat', 'disperser', 'distortion', 'drizpars', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'ote', 'photom', 'regions', 'sflat', 'specwcs', 'wavelengthrange', 'wfssbkg'] INFO stpipe.Image2Pipeline:pipeline.py:366 Prefetch for AREA reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:366 Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. INFO stpipe.Image2Pipeline:pipeline.py:366 Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. INFO stpipe.Image2Pipeline:pipeline.py:366 Prefetch for DFLAT reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:366 Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0038.asdf'. INFO stpipe.Image2Pipeline:pipeline.py:366 Prefetch for DISTORTION reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:366 Prefetch for DRIZPARS reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:366 Prefetch for FFLAT reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:366 Prefetch for FILTEROFFSET reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:366 Prefetch for FLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_flat_0066.fits'. INFO stpipe.Image2Pipeline:pipeline.py:366 Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0023.asdf'. INFO stpipe.Image2Pipeline:pipeline.py:366 Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. INFO stpipe.Image2Pipeline:pipeline.py:366 Prefetch for IFUFORE reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:366 Prefetch for IFUPOST reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:366 Prefetch for IFUSLICER reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:366 Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. INFO stpipe.Image2Pipeline:pipeline.py:366 Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. INFO stpipe.Image2Pipeline:pipeline.py:366 Prefetch for PHOTOM reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:366 Prefetch for REGIONS reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:366 Prefetch for SFLAT reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:366 Prefetch for SPECWCS reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:366 Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. INFO stpipe.Image2Pipeline:pipeline.py:366 Prefetch for WFSSBKG reference file is 'N/A'. INFO stpipe.Image2Pipeline:calwebb_image2.py:49 Starting calwebb_image2 ... INFO stpipe.Image2Pipeline:calwebb_image2.py:58 Processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20/jw84600010001_02102_00001_nrs2 INFO stpipe.Image2Pipeline:calwebb_image2.py:124 Working on input /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20/jw84600010001_02102_00001_nrs2_rate.fits ... INFO stpipe.Image2Pipeline.assign_wcs:step.py:430 Step assign_wcs running with args (<ImageModel(2048, 2048) from jw84600010001_02102_00001_nrs2_rate.fits>,). INFO stpipe.Image2Pipeline.assign_wcs:step.py:434 Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} DEBUG stpipe.Image2Pipeline.assign_wcs:assign_wcs_step.py:80 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0038.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0023.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.Image2Pipeline.assign_wcs:assign_wcs_step.py:80 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0038.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0023.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:1375 gwa_ytilt is 0.196992189 deg INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:1375 gwa_ytilt is 0.196992189 deg INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:1376 gwa_xtilt is 0.344913125 deg INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:1376 gwa_xtilt is 0.344913125 deg INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:1380 theta_y correction: 0.0016337351377937479 deg INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:1380 theta_y correction: 0.0016337351377937479 deg INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:1386 theta_x correction: 0.00011189912410338978 deg INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:1386 theta_x correction: 0.00011189912410338978 deg INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:62 Created a NIRSPEC nrs_confirm pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0038.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0023.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:62 Created a NIRSPEC nrs_confirm pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0038.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0023.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} INFO stpipe.Image2Pipeline.assign_wcs:util.py:1060 Update S_REGION to POLYGON ICRS 6.082169507 -66.574485311 6.182816799 -66.619097807 6.295411405 -66.579726772 6.191732685 -66.535860807 INFO stpipe.Image2Pipeline.assign_wcs:util.py:1060 Update S_REGION to POLYGON ICRS 6.082169507 -66.574485311 6.182816799 -66.619097807 6.295411405 -66.579726772 6.191732685 -66.535860807 INFO stpipe.Image2Pipeline.assign_wcs:assign_wcs.py:82 assign_wcs updated S_REGION to POLYGON ICRS 6.082169507 -66.574485311 6.182816799 -66.619097807 6.295411405 -66.579726772 6.191732685 -66.535860807 INFO stpipe.Image2Pipeline.assign_wcs:assign_wcs.py:82 assign_wcs updated S_REGION to POLYGON ICRS 6.082169507 -66.574485311 6.182816799 -66.619097807 6.295411405 -66.579726772 6.191732685 -66.535860807 INFO stpipe.Image2Pipeline.assign_wcs:assign_wcs.py:96 COMPLETED assign_wcs INFO stpipe.Image2Pipeline.assign_wcs:assign_wcs.py:96 COMPLETED assign_wcs WARNING stpipe.Image2Pipeline.assign_wcs:assign_wcs_step.py:111 Failed to update 'meta.wcsinfo' with FITS SIP approximation. Reported error is: WARNING stpipe.Image2Pipeline.assign_wcs:assign_wcs_step.py:111 Failed to update 'meta.wcsinfo' with FITS SIP approximation. Reported error is: WARNING stpipe.Image2Pipeline.assign_wcs:assign_wcs_step.py:111 "A bounding_box is needed to proceed." WARNING stpipe.Image2Pipeline.assign_wcs:assign_wcs_step.py:111 "A bounding_box is needed to proceed." INFO stpipe.Image2Pipeline.assign_wcs:step.py:546 Step assign_wcs done INFO stpipe.Image2Pipeline.flat_field:step.py:430 Step flat_field running with args (<ImageModel(2048, 2048) from jw84600010001_02102_00001_nrs2_rate.fits>,). INFO stpipe.Image2Pipeline.flat_field:step.py:434 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.Image2Pipeline.flat_field:flat_field_step.py:74 Input is ImageModel of exposure type NRS_CONFIRM DEBUG stpipe.Image2Pipeline.flat_field:flat_field_step.py:199 Using FLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_flat_0066.fits DEBUG stpipe.Image2Pipeline.flat_field:flat_field_step.py:201 No reference found for type FFLAT DEBUG stpipe.Image2Pipeline.flat_field:flat_field_step.py:201 No reference found for type SFLAT DEBUG stpipe.Image2Pipeline.flat_field:flat_field_step.py:201 No reference found for type DFLAT DEBUG stpipe.Image2Pipeline.flat_field:flat_field.py:115 Flat field correction for NIRSpec imaging data. DEBUG stpipe.Image2Pipeline.flat_field:flat_field.py:115 Flat field correction for NIRSpec imaging data. DEBUG stpipe.Image2Pipeline.flat_field:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Image2Pipeline.flat_field:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Image2Pipeline.flat_field:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Image2Pipeline.flat_field:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 INFO stpipe.Image2Pipeline.flat_field:step.py:546 Step flat_field done INFO stpipe.Image2Pipeline.photom:step.py:430 Step photom running with args (<ImageModel(2048, 2048) from jw84600010001_02102_00001_nrs2_rate.fits>,). INFO stpipe.Image2Pipeline.photom:step.py:434 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20', 'inverse': False, 'source_type': None} DEBUG stpipe.Image2Pipeline.photom:photom_step.py:35 Input is ImageModel INFO stpipe.Image2Pipeline.photom:photom_step.py:55 Using photom reference file: N/A INFO stpipe.Image2Pipeline.photom:photom_step.py:56 Using area reference file: N/A WARNING stpipe.Image2Pipeline.photom:photom_step.py:60 No PHOTOM reference file found WARNING stpipe.Image2Pipeline.photom:photom_step.py:61 Photom step will be skipped INFO stpipe.Image2Pipeline.photom:step.py:546 Step photom done INFO stpipe.Image2Pipeline:calwebb_image2.py:163 Finished processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20/jw84600010001_02102_00001_nrs2 INFO stpipe.Image2Pipeline:calwebb_image2.py:79 ... ending calwebb_image2 INFO stpipe.Image2Pipeline:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Image2Pipeline:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Image2Pipeline:step.py:1016 Saved model in jw84600010001_02102_00001_nrs2_cal.fits INFO stpipe.Image2Pipeline:step.py:546 Step Image2Pipeline done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_image2.py::test_flat_field_step_user_supplied_flat | 5.48 | |
|
------------------------------Captured stderr call------------------------------ 2022-10-06 04:31:16,052 - stpipe.FlatFieldStep - INFO - FlatFieldStep instance created. 2022-10-06 04:31:16,260 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp1/usf_assign_wcs.fits',). 2022-10-06 04:31:16,261 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp1/usf_flat.fits', 'inverse': False} 2022-10-06 04:31:16,654 - stpipe.FlatFieldStep - INFO - User-supplied flat /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp1/usf_flat.fits given. Ignoring all flat reference files and flat creation. 2022-10-06 04:31:17,292 - stpipe.FlatFieldStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:31:17,292 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep done -------------------------------Captured log call-------------------------------- INFO stpipe.FlatFieldStep:step.py:366 FlatFieldStep instance created. INFO stpipe.FlatFieldStep:step.py:430 Step FlatFieldStep running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp1/usf_assign_wcs.fits',). INFO stpipe.FlatFieldStep:step.py:434 Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp1/usf_flat.fits', 'inverse': False} DEBUG stpipe.FlatFieldStep:flat_field_step.py:74 Input is ImageModel of exposure type NRS_CONFIRM INFO stpipe.FlatFieldStep:flat_field_step.py:96 User-supplied flat /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp1/usf_flat.fits given. Ignoring all flat reference files and flat creation. DEBUG stpipe.FlatFieldStep:flat_field.py:115 Flat field correction for NIRSpec imaging data. DEBUG stpipe.FlatFieldStep:flat_field.py:115 Flat field correction for NIRSpec imaging data. DEBUG stpipe.FlatFieldStep:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.FlatFieldStep:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.FlatFieldStep:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.FlatFieldStep:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 INFO stpipe.FlatFieldStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.FlatFieldStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.FlatFieldStep:step.py:546 Step FlatFieldStep done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_image2.py::test_ff_inv | 3.02 | |
|
------------------------------Captured stderr call------------------------------ 2022-10-06 04:31:20,774 - stpipe.FlatFieldStep - INFO - FlatFieldStep instance created. 2022-10-06 04:31:20,950 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep running with args (<ImageModel(2048, 2048) from usf_assign_wcs.fits>,). 2022-10-06 04:31:20,951 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2022-10-06 04:31:21,632 - stpipe.FlatFieldStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:31:21,632 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep done 2022-10-06 04:31:21,642 - stpipe.FlatFieldStep - INFO - FlatFieldStep instance created. 2022-10-06 04:31:21,822 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep running with args (<ImageModel(2048, 2048) from usf_assign_wcs.fits>,). 2022-10-06 04:31:21,823 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': True} 2022-10-06 04:31:22,508 - stpipe.FlatFieldStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:31:22,509 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep done -------------------------------Captured log call-------------------------------- INFO stpipe.FlatFieldStep:step.py:366 FlatFieldStep instance created. INFO stpipe.FlatFieldStep:step.py:430 Step FlatFieldStep running with args (<ImageModel(2048, 2048) from usf_assign_wcs.fits>,). INFO stpipe.FlatFieldStep:step.py:434 Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.FlatFieldStep:flat_field_step.py:74 Input is ImageModel of exposure type NRS_CONFIRM DEBUG stpipe.FlatFieldStep:flat_field_step.py:199 Using FLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_flat_0066.fits DEBUG stpipe.FlatFieldStep:flat_field_step.py:201 No reference found for type FFLAT DEBUG stpipe.FlatFieldStep:flat_field_step.py:201 No reference found for type SFLAT DEBUG stpipe.FlatFieldStep:flat_field_step.py:201 No reference found for type DFLAT DEBUG stpipe.FlatFieldStep:flat_field.py:115 Flat field correction for NIRSpec imaging data. DEBUG stpipe.FlatFieldStep:flat_field.py:115 Flat field correction for NIRSpec imaging data. DEBUG stpipe.FlatFieldStep:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.FlatFieldStep:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.FlatFieldStep:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.FlatFieldStep:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 INFO stpipe.FlatFieldStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.FlatFieldStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.FlatFieldStep:step.py:546 Step FlatFieldStep done INFO stpipe.FlatFieldStep:step.py:366 FlatFieldStep instance created. INFO stpipe.FlatFieldStep:step.py:430 Step FlatFieldStep running with args (<ImageModel(2048, 2048) from usf_assign_wcs.fits>,). INFO stpipe.FlatFieldStep:step.py:434 Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': True} DEBUG stpipe.FlatFieldStep:flat_field_step.py:74 Input is ImageModel of exposure type NRS_CONFIRM DEBUG stpipe.FlatFieldStep:flat_field_step.py:199 Using FLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_flat_0066.fits DEBUG stpipe.FlatFieldStep:flat_field_step.py:201 No reference found for type FFLAT DEBUG stpipe.FlatFieldStep:flat_field_step.py:201 No reference found for type SFLAT DEBUG stpipe.FlatFieldStep:flat_field_step.py:201 No reference found for type DFLAT DEBUG stpipe.FlatFieldStep:flat_field.py:115 Flat field correction for NIRSpec imaging data. DEBUG stpipe.FlatFieldStep:flat_field.py:115 Flat field correction for NIRSpec imaging data. DEBUG stpipe.FlatFieldStep:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.FlatFieldStep:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.FlatFieldStep:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.FlatFieldStep:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 INFO stpipe.FlatFieldStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.FlatFieldStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.FlatFieldStep:step.py:546 Step FlatFieldStep done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_image2.py::test_correction_pars | 2.68 | |
|
------------------------------Captured stderr call------------------------------ 2022-10-06 04:31:23,678 - stpipe.FlatFieldStep - INFO - FlatFieldStep instance created. 2022-10-06 04:31:23,884 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep running with args (<ImageModel(2048, 2048) from usf_assign_wcs.fits>,). 2022-10-06 04:31:23,885 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2022-10-06 04:31:24,513 - stpipe.FlatFieldStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:31:24,513 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep done 2022-10-06 04:31:24,692 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep running with args (<ImageModel(2048, 2048) from usf_assign_wcs.fits>,). 2022-10-06 04:31:24,693 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'flatfieldstep', 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2022-10-06 04:31:24,700 - stpipe.FlatFieldStep - INFO - Using flat field from correction pars <FlatModel(2048, 2048) from jwst_nirspec_flat_0066.fits> 2022-10-06 04:31:25,191 - stpipe.FlatFieldStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:31:25,192 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep done -------------------------------Captured log call-------------------------------- INFO stpipe.FlatFieldStep:step.py:366 FlatFieldStep instance created. INFO stpipe.FlatFieldStep:step.py:430 Step FlatFieldStep running with args (<ImageModel(2048, 2048) from usf_assign_wcs.fits>,). INFO stpipe.FlatFieldStep:step.py:434 Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.FlatFieldStep:flat_field_step.py:74 Input is ImageModel of exposure type NRS_CONFIRM DEBUG stpipe.FlatFieldStep:flat_field_step.py:199 Using FLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_flat_0066.fits DEBUG stpipe.FlatFieldStep:flat_field_step.py:201 No reference found for type FFLAT DEBUG stpipe.FlatFieldStep:flat_field_step.py:201 No reference found for type SFLAT DEBUG stpipe.FlatFieldStep:flat_field_step.py:201 No reference found for type DFLAT DEBUG stpipe.FlatFieldStep:flat_field.py:115 Flat field correction for NIRSpec imaging data. DEBUG stpipe.FlatFieldStep:flat_field.py:115 Flat field correction for NIRSpec imaging data. DEBUG stpipe.FlatFieldStep:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.FlatFieldStep:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.FlatFieldStep:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.FlatFieldStep:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 INFO stpipe.FlatFieldStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.FlatFieldStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.FlatFieldStep:step.py:546 Step FlatFieldStep done INFO stpipe.FlatFieldStep:step.py:430 Step FlatFieldStep running with args (<ImageModel(2048, 2048) from usf_assign_wcs.fits>,). INFO stpipe.FlatFieldStep:step.py:434 Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'flatfieldstep', 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.FlatFieldStep:flat_field_step.py:74 Input is ImageModel of exposure type NRS_CONFIRM INFO stpipe.FlatFieldStep:flat_field_step.py:110 Using flat field from correction pars <FlatModel(2048, 2048) from jwst_nirspec_flat_0066.fits> DEBUG stpipe.FlatFieldStep:flat_field.py:115 Flat field correction for NIRSpec imaging data. DEBUG stpipe.FlatFieldStep:flat_field.py:115 Flat field correction for NIRSpec imaging data. DEBUG stpipe.FlatFieldStep:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.FlatFieldStep:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.FlatFieldStep:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.FlatFieldStep:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 INFO stpipe.FlatFieldStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.FlatFieldStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.FlatFieldStep:step.py:546 Step FlatFieldStep done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_irs2_detector1.py::test_nirspec_irs2_detector1[dq_init] | 140.35 | |
|
-----------------------------Captured stderr setup------------------------------ 2022-10-06 04:31:28,451 - stpipe - INFO - PARS-DETECTOR1PIPELINE parameters found: /grp/crds/cache/references/jwst/jwst_nirspec_pars-detector1pipeline_0004.asdf 2022-10-06 04:31:28,489 - stpipe.Detector1Pipeline - INFO - Detector1Pipeline instance created. 2022-10-06 04:31:28,490 - stpipe.Detector1Pipeline.group_scale - INFO - GroupScaleStep instance created. 2022-10-06 04:31:28,491 - stpipe.Detector1Pipeline.dq_init - INFO - DQInitStep instance created. 2022-10-06 04:31:28,491 - stpipe.Detector1Pipeline.saturation - INFO - SaturationStep instance created. 2022-10-06 04:31:28,492 - stpipe.Detector1Pipeline.ipc - INFO - IPCStep instance created. 2022-10-06 04:31:28,493 - stpipe.Detector1Pipeline.superbias - INFO - SuperBiasStep instance created. 2022-10-06 04:31:28,494 - stpipe.Detector1Pipeline.refpix - INFO - RefPixStep instance created. 2022-10-06 04:31:28,495 - stpipe.Detector1Pipeline.rscd - INFO - RscdStep instance created. 2022-10-06 04:31:28,496 - stpipe.Detector1Pipeline.firstframe - INFO - FirstFrameStep instance created. 2022-10-06 04:31:28,496 - stpipe.Detector1Pipeline.lastframe - INFO - LastFrameStep instance created. 2022-10-06 04:31:28,497 - stpipe.Detector1Pipeline.linearity - INFO - LinearityStep instance created. 2022-10-06 04:31:28,498 - stpipe.Detector1Pipeline.dark_current - INFO - DarkCurrentStep instance created. 2022-10-06 04:31:28,498 - stpipe.Detector1Pipeline.reset - INFO - ResetStep instance created. 2022-10-06 04:31:28,499 - stpipe.Detector1Pipeline.persistence - INFO - PersistenceStep instance created. 2022-10-06 04:31:28,500 - stpipe.Detector1Pipeline.jump - INFO - JumpStep instance created. 2022-10-06 04:31:28,501 - stpipe.Detector1Pipeline.ramp_fit - INFO - RampFitStep instance created. 2022-10-06 04:31:28,502 - stpipe.Detector1Pipeline.gain_scale - INFO - GainScaleStep instance created. 2022-10-06 04:31:28,727 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0/jw0010010_11010_nrs1_chimera_uncal.fits',). 2022-10-06 04:31:28,736 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'save_calibrated_ramp': False, 'steps': {'group_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'}, 'dq_init': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'}, 'saturation': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'n_pix_grow_sat': 1}, 'ipc': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'}, 'superbias': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'}, 'refpix': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True}, 'rscd': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'type': 'baseline'}, 'firstframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'}, 'lastframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'}, 'linearity': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'}, 'dark_current': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'dark_output': None}, 'reset': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'}, 'persistence': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'input_trapsfilled': '', 'flag_pers_cutoff': 40.0, 'save_persistence': False, 'save_trapsfilled': True}, 'jump': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'rejection_threshold': 200.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0, 'after_jump_flag_dn1': 0.0, 'after_jump_flag_time1': 0.0, 'after_jump_flag_dn2': 0.0, 'after_jump_flag_time2': 0.0}, 'ramp_fit': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'int_name': '', 'save_opt': False, 'opt_name': '', 'suppress_one_group': True, 'maximum_cores': 'none'}, 'gain_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'}}} 2022-10-06 04:31:29,181 - stpipe.Detector1Pipeline - INFO - Prefetching reference files for dataset: 'jw0010010_11010_nrs1_chimera_uncal.fits' reftypes = ['dark', 'gain', 'linearity', 'mask', 'persat', 'readnoise', 'refpix', 'reset', 'rscd', 'saturation', 'superbias', 'trapdensity', 'trappars'] 2022-10-06 04:31:29,193 - stpipe.Detector1Pipeline - INFO - Prefetch for DARK reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dark_0088.fits'. 2022-10-06 04:31:29,195 - stpipe.Detector1Pipeline - INFO - Prefetch for GAIN reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_gain_0023.fits'. 2022-10-06 04:31:29,196 - stpipe.Detector1Pipeline - INFO - Prefetch for LINEARITY reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_linearity_0022.fits'. 2022-10-06 04:31:29,197 - stpipe.Detector1Pipeline - INFO - Prefetch for MASK reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_mask_0010.fits'. 2022-10-06 04:31:29,198 - stpipe.Detector1Pipeline - INFO - Prefetch for PERSAT reference file is 'N/A'. 2022-10-06 04:31:29,198 - stpipe.Detector1Pipeline - INFO - Prefetch for READNOISE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0018.fits'. 2022-10-06 04:31:29,199 - stpipe.Detector1Pipeline - INFO - Prefetch for REFPIX reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_refpix_0019.fits'. 2022-10-06 04:31:29,200 - stpipe.Detector1Pipeline - INFO - Prefetch for RESET reference file is 'N/A'. 2022-10-06 04:31:29,200 - stpipe.Detector1Pipeline - INFO - Prefetch for RSCD reference file is 'N/A'. 2022-10-06 04:31:29,200 - stpipe.Detector1Pipeline - INFO - Prefetch for SATURATION reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_saturation_0027.fits'. 2022-10-06 04:31:29,202 - stpipe.Detector1Pipeline - INFO - Prefetch for SUPERBIAS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_superbias_0117.fits'. 2022-10-06 04:31:29,203 - stpipe.Detector1Pipeline - INFO - Prefetch for TRAPDENSITY reference file is 'N/A'. 2022-10-06 04:31:29,203 - stpipe.Detector1Pipeline - INFO - Prefetch for TRAPPARS reference file is 'N/A'. 2022-10-06 04:31:29,203 - stpipe.Detector1Pipeline - INFO - Starting calwebb_detector1 ... 2022-10-06 04:31:29,859 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale running with args (<RampModel(1, 7, 3200, 2048) from jw0010010_11010_nrs1_chimera_uncal.fits>,). 2022-10-06 04:31:29,860 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'} 2022-10-06 04:31:30,261 - stpipe.Detector1Pipeline.group_scale - INFO - NFRAMES and FRMDIVSR are equal; correction not needed 2022-10-06 04:31:30,262 - stpipe.Detector1Pipeline.group_scale - INFO - Step will be skipped 2022-10-06 04:31:30,264 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale done 2022-10-06 04:31:30,448 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init running with args (<RampModel(1, 7, 3200, 2048) from jw0010010_11010_nrs1_chimera_uncal.fits>,). 2022-10-06 04:31:30,449 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'} 2022-10-06 04:31:30,470 - stpipe.Detector1Pipeline.dq_init - INFO - Using MASK reference file /grp/crds/cache/references/jwst/jwst_nirspec_mask_0010.fits 2022-10-06 04:31:32,030 - stpipe.Detector1Pipeline.dq_init - INFO - Saved model in jw0010010_11010_nrs1_chimera_dq_init.fits 2022-10-06 04:31:32,030 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init done 2022-10-06 04:31:32,210 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation running with args (<RampModel(1, 7, 3200, 2048) from jw0010010_11010_nrs1_chimera_dq_init.fits>,). 2022-10-06 04:31:32,211 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'n_pix_grow_sat': 1} 2022-10-06 04:31:32,233 - stpipe.Detector1Pipeline.saturation - INFO - Using SATURATION reference file /grp/crds/cache/references/jwst/jwst_nirspec_saturation_0027.fits 2022-10-06 04:31:35,122 - stpipe.Detector1Pipeline.saturation - INFO - Detected 99307 saturated pixels 2022-10-06 04:31:35,214 - stpipe.Detector1Pipeline.saturation - INFO - Detected 0 A/D floor pixels 2022-10-06 04:31:35,561 - stpipe.Detector1Pipeline.saturation - INFO - Saved model in jw0010010_11010_nrs1_chimera_saturation.fits 2022-10-06 04:31:35,561 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation done 2022-10-06 04:31:35,737 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc running with args (<RampModel(1, 7, 3200, 2048) from jw0010010_11010_nrs1_chimera_saturation.fits>,). 2022-10-06 04:31:35,738 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'} 2022-10-06 04:31:35,738 - stpipe.Detector1Pipeline.ipc - INFO - Step skipped. 2022-10-06 04:31:35,740 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc done 2022-10-06 04:31:35,905 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias running with args (<RampModel(1, 7, 3200, 2048) from jw0010010_11010_nrs1_chimera_saturation.fits>,). 2022-10-06 04:31:35,906 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'} 2022-10-06 04:31:35,929 - stpipe.Detector1Pipeline.superbias - INFO - Using SUPERBIAS reference file /grp/crds/cache/references/jwst/jwst_nirspec_superbias_0117.fits 2022-10-06 04:31:38,576 - stpipe.Detector1Pipeline.superbias - INFO - Saved model in jw0010010_11010_nrs1_chimera_superbias.fits 2022-10-06 04:31:38,576 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias done 2022-10-06 04:31:38,748 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix running with args (<RampModel(1, 7, 3200, 2048) from jw0010010_11010_nrs1_chimera_superbias.fits>,). 2022-10-06 04:31:38,749 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True} 2022-10-06 04:31:38,771 - stpipe.Detector1Pipeline.refpix - INFO - Using refpix reference file: /grp/crds/cache/references/jwst/jwst_nirspec_refpix_0019.fits 2022-10-06 04:31:39,529 - stpipe.Detector1Pipeline.refpix - INFO - Working on integration 1 2022-10-06 04:32:17,568 - stpipe.Detector1Pipeline.refpix - INFO - Saved model in jw0010010_11010_nrs1_chimera_refpix.fits 2022-10-06 04:32:17,568 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix done 2022-10-06 04:32:17,837 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity running with args (<RampModel(1, 7, 3200, 2048) from jw0010010_11010_nrs1_chimera_refpix.fits>,). 2022-10-06 04:32:17,838 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'} 2022-10-06 04:32:17,863 - stpipe.Detector1Pipeline.linearity - INFO - Using Linearity reference file /grp/crds/cache/references/jwst/jwst_nirspec_linearity_0022.fits 2022-10-06 04:32:18,845 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword BAD_LIN_CORR does not correspond to an existing DQ mnemonic, so will be ignored 2022-10-06 04:32:20,239 - stpipe.Detector1Pipeline.linearity - INFO - Saved model in jw0010010_11010_nrs1_chimera_linearity.fits 2022-10-06 04:32:20,240 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity done 2022-10-06 04:32:20,433 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current running with args (<RampModel(1, 7, 3200, 2048) from jw0010010_11010_nrs1_chimera_linearity.fits>,). 2022-10-06 04:32:20,434 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'dark_output': None} 2022-10-06 04:32:20,654 - stpipe.Detector1Pipeline.dark_current - INFO - Using DARK reference file /grp/crds/cache/references/jwst/jwst_nirspec_dark_0088.fits 2022-10-06 04:32:56,534 - stpipe.Detector1Pipeline.dark_current - INFO - Science data nints=1, ngroups=7, nframes=1, groupgap=0 2022-10-06 04:32:56,534 - stpipe.Detector1Pipeline.dark_current - INFO - Dark data nints=1, ngroups=65, nframes=1, groupgap=0 2022-10-06 04:32:58,206 - stpipe.Detector1Pipeline.dark_current - INFO - Saved model in jw0010010_11010_nrs1_chimera_dark_current.fits 2022-10-06 04:32:58,206 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current done 2022-10-06 04:32:58,583 - stpipe.Detector1Pipeline.jump - INFO - Step jump running with args (<RampModel(1, 7, 3200, 2048) from jw0010010_11010_nrs1_chimera_dark_current.fits>,). 2022-10-06 04:32:58,584 - stpipe.Detector1Pipeline.jump - INFO - Step jump parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'rejection_threshold': 200.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0, 'after_jump_flag_dn1': 0.0, 'after_jump_flag_time1': 0.0, 'after_jump_flag_dn2': 0.0, 'after_jump_flag_time2': 0.0} 2022-10-06 04:32:58,657 - stpipe.Detector1Pipeline.jump - INFO - CR rejection threshold = 200 sigma 2022-10-06 04:32:58,733 - stpipe.Detector1Pipeline.jump - INFO - Using GAIN reference file: /grp/crds/cache/references/jwst/jwst_nirspec_gain_0023.fits 2022-10-06 04:32:59,129 - stpipe.Detector1Pipeline.jump - INFO - Using READNOISE reference file: /grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0018.fits 2022-10-06 04:32:59,736 - stpipe.Detector1Pipeline.jump - INFO - Executing two-point difference method 2022-10-06 04:32:59,808 - stpipe.Detector1Pipeline.jump - INFO - Working on integration 1: 2022-10-06 04:33:02,727 - stpipe.Detector1Pipeline.jump - INFO - From highest outlier, two-point found 106 pixels with at least one CR from five or more groups. 2022-10-06 04:33:02,727 - stpipe.Detector1Pipeline.jump - INFO - From highest outlier, two-point found 810 pixels with at least one CR from four groups. 2022-10-06 04:33:02,727 - stpipe.Detector1Pipeline.jump - INFO - From highest outlier, two-point found 970 pixels with at least one CR from three groups. 2022-10-06 04:33:03,060 - stpipe.Detector1Pipeline.jump - INFO - Total elapsed time = 3.32453 sec 2022-10-06 04:33:03,063 - stpipe.Detector1Pipeline.jump - INFO - The execution time in seconds: 4.406409 2022-10-06 04:33:03,301 - stpipe.Detector1Pipeline.jump - INFO - Saved model in jw0010010_11010_nrs1_chimera_jump.fits 2022-10-06 04:33:03,302 - stpipe.Detector1Pipeline.jump - INFO - Step jump done 2022-10-06 04:33:03,492 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit running with args (<RampModel(1, 7, 3200, 2048) from jw0010010_11010_nrs1_chimera_jump.fits>,). 2022-10-06 04:33:03,493 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'int_name': '', 'save_opt': False, 'opt_name': '', 'suppress_one_group': True, 'maximum_cores': 'none'} 2022-10-06 04:33:03,650 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using READNOISE reference file: /grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0018.fits 2022-10-06 04:33:03,650 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using GAIN reference file: /grp/crds/cache/references/jwst/jwst_nirspec_gain_0023.fits 2022-10-06 04:33:03,748 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using algorithm = ols 2022-10-06 04:33:03,749 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using weighting = optimal 2022-10-06 04:33:37,350 - stpipe.Detector1Pipeline.ramp_fit - INFO - Number of groups per integration: 7 2022-10-06 04:33:37,350 - stpipe.Detector1Pipeline.ramp_fit - INFO - Number of integrations: 1 2022-10-06 04:33:37,680 - stpipe.Detector1Pipeline.ramp_fit - INFO - Saved model in jw0010010_11010_nrs1_chimera_0_ramp_fit.fits 2022-10-06 04:33:37,824 - stpipe.Detector1Pipeline.ramp_fit - INFO - Saved model in jw0010010_11010_nrs1_chimera_1_ramp_fit.fits 2022-10-06 04:33:37,825 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit done 2022-10-06 04:33:38,029 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<ImageModel(2048, 2048) from jw0010010_11010_nrs1_chimera_0_ramp_fit.fits>,). 2022-10-06 04:33:38,030 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'gain_scale', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'} 2022-10-06 04:33:38,089 - stpipe.Detector1Pipeline.gain_scale - INFO - Rescaling by 1.0 2022-10-06 04:33:38,255 - stpipe.Detector1Pipeline.gain_scale - INFO - Saved model in jw0010010_11010_nrs1_chimera_gain_scale.fits 2022-10-06 04:33:38,255 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done 2022-10-06 04:33:38,426 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<CubeModel(1, 2048, 2048) from jw0010010_11010_nrs1_chimera_1_ramp_fit.fits>,). 2022-10-06 04:33:38,427 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'gain_scaleints', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'} 2022-10-06 04:33:38,502 - stpipe.Detector1Pipeline.gain_scale - INFO - Rescaling by 1.0 2022-10-06 04:33:38,664 - stpipe.Detector1Pipeline.gain_scale - INFO - Saved model in jw0010010_11010_nrs1_chimera_gain_scaleints.fits 2022-10-06 04:33:38,664 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done 2022-10-06 04:33:38,809 - stpipe.Detector1Pipeline - INFO - Saved model in jw0010010_11010_nrs1_chimera_rateints.fits 2022-10-06 04:33:38,809 - stpipe.Detector1Pipeline - INFO - ... ending calwebb_detector1 2022-10-06 04:33:38,809 - stpipe.Detector1Pipeline - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:33:38,951 - stpipe.Detector1Pipeline - INFO - Saved model in jw0010010_11010_nrs1_chimera_rate.fits 2022-10-06 04:33:38,951 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline done -------------------------------Captured log setup------------------------------- INFO stpipe:pipeline.py:208 PARS-DETECTOR1PIPELINE parameters found: /grp/crds/cache/references/jwst/jwst_nirspec_pars-detector1pipeline_0004.asdf INFO stpipe.Detector1Pipeline:step.py:366 Detector1Pipeline instance created. INFO stpipe.Detector1Pipeline.group_scale:step.py:366 GroupScaleStep instance created. INFO stpipe.Detector1Pipeline.dq_init:step.py:366 DQInitStep instance created. INFO stpipe.Detector1Pipeline.saturation:step.py:366 SaturationStep instance created. INFO stpipe.Detector1Pipeline.ipc:step.py:366 IPCStep instance created. INFO stpipe.Detector1Pipeline.superbias:step.py:366 SuperBiasStep instance created. INFO stpipe.Detector1Pipeline.refpix:step.py:366 RefPixStep instance created. INFO stpipe.Detector1Pipeline.rscd:step.py:366 RscdStep instance created. INFO stpipe.Detector1Pipeline.firstframe:step.py:366 FirstFrameStep instance created. INFO stpipe.Detector1Pipeline.lastframe:step.py:366 LastFrameStep instance created. INFO stpipe.Detector1Pipeline.linearity:step.py:366 LinearityStep instance created. INFO stpipe.Detector1Pipeline.dark_current:step.py:366 DarkCurrentStep instance created. INFO stpipe.Detector1Pipeline.reset:step.py:366 ResetStep instance created. INFO stpipe.Detector1Pipeline.persistence:step.py:366 PersistenceStep instance created. INFO stpipe.Detector1Pipeline.jump:step.py:366 JumpStep instance created. INFO stpipe.Detector1Pipeline.ramp_fit:step.py:366 RampFitStep instance created. INFO stpipe.Detector1Pipeline.gain_scale:step.py:366 GainScaleStep instance created. INFO stpipe.Detector1Pipeline:step.py:430 Step Detector1Pipeline running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0/jw0010010_11010_nrs1_chimera_uncal.fits',). INFO stpipe.Detector1Pipeline:step.py:434 Step Detector1Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'save_calibrated_ramp': False, 'steps': {'group_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'}, 'dq_init': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'}, 'saturation': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'n_pix_grow_sat': 1}, 'ipc': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'}, 'superbias': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'}, 'refpix': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True}, 'rscd': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'type': 'baseline'}, 'firstframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'}, 'lastframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'}, 'linearity': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'}, 'dark_current': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'dark_output': None}, 'reset': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'}, 'persistence': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'input_trapsfilled': '', 'flag_pers_cutoff': 40.0, 'save_persistence': False, 'save_trapsfilled': True}, 'jump': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'rejection_threshold': 200.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0, 'after_jump_flag_dn1': 0.0, 'after_jump_flag_time1': 0.0, 'after_jump_flag_dn2': 0.0, 'after_jump_flag_time2': 0.0}, 'ramp_fit': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'int_name': '', 'save_opt': False, 'opt_name': '', 'suppress_one_group': True, 'maximum_cores': 'none'}, 'gain_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'}}} INFO stpipe.Detector1Pipeline:pipeline.py:358 Prefetching reference files for dataset: 'jw0010010_11010_nrs1_chimera_uncal.fits' reftypes = ['dark', 'gain', 'linearity', 'mask', 'persat', 'readnoise', 'refpix', 'reset', 'rscd', 'saturation', 'superbias', 'trapdensity', 'trappars'] INFO stpipe.Detector1Pipeline:pipeline.py:366 Prefetch for DARK reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dark_0088.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:366 Prefetch for GAIN reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_gain_0023.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:366 Prefetch for LINEARITY reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_linearity_0022.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:366 Prefetch for MASK reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_mask_0010.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:366 Prefetch for PERSAT reference file is 'N/A'. INFO stpipe.Detector1Pipeline:pipeline.py:366 Prefetch for READNOISE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0018.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:366 Prefetch for REFPIX reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_refpix_0019.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:366 Prefetch for RESET reference file is 'N/A'. INFO stpipe.Detector1Pipeline:pipeline.py:366 Prefetch for RSCD reference file is 'N/A'. INFO stpipe.Detector1Pipeline:pipeline.py:366 Prefetch for SATURATION reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_saturation_0027.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:366 Prefetch for SUPERBIAS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_superbias_0117.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:366 Prefetch for TRAPDENSITY reference file is 'N/A'. INFO stpipe.Detector1Pipeline:pipeline.py:366 Prefetch for TRAPPARS reference file is 'N/A'. INFO stpipe.Detector1Pipeline:calwebb_detector1.py:68 Starting calwebb_detector1 ... INFO stpipe.Detector1Pipeline:calwebb_detector1.py:68 Starting calwebb_detector1 ... DEBUG stpipe.Detector1Pipeline:calwebb_detector1.py:102 Processing a Near-IR exposure DEBUG stpipe.Detector1Pipeline:calwebb_detector1.py:102 Processing a Near-IR exposure INFO stpipe.Detector1Pipeline.group_scale:step.py:430 Step group_scale running with args (<RampModel(1, 7, 3200, 2048) from jw0010010_11010_nrs1_chimera_uncal.fits>,). INFO stpipe.Detector1Pipeline.group_scale:step.py:434 Step group_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'} INFO stpipe.Detector1Pipeline.group_scale:group_scale_step.py:51 NFRAMES and FRMDIVSR are equal; correction not needed INFO stpipe.Detector1Pipeline.group_scale:group_scale_step.py:52 Step will be skipped INFO stpipe.Detector1Pipeline.group_scale:step.py:546 Step group_scale done INFO stpipe.Detector1Pipeline.dq_init:step.py:430 Step dq_init running with args (<RampModel(1, 7, 3200, 2048) from jw0010010_11010_nrs1_chimera_uncal.fits>,). INFO stpipe.Detector1Pipeline.dq_init:step.py:434 Step dq_init parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'} INFO stpipe.Detector1Pipeline.dq_init:dq_init_step.py:65 Using MASK reference file /grp/crds/cache/references/jwst/jwst_nirspec_mask_0010.fits DEBUG stpipe.Detector1Pipeline.dq_init:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.dq_init:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.dq_init:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.dq_init:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 INFO stpipe.Detector1Pipeline.dq_init:step.py:1016 Saved model in jw0010010_11010_nrs1_chimera_dq_init.fits INFO stpipe.Detector1Pipeline.dq_init:step.py:546 Step dq_init done INFO stpipe.Detector1Pipeline.saturation:step.py:430 Step saturation running with args (<RampModel(1, 7, 3200, 2048) from jw0010010_11010_nrs1_chimera_dq_init.fits>,). INFO stpipe.Detector1Pipeline.saturation:step.py:434 Step saturation parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'n_pix_grow_sat': 1} INFO stpipe.Detector1Pipeline.saturation:saturation_step.py:32 Using SATURATION reference file /grp/crds/cache/references/jwst/jwst_nirspec_saturation_0027.fits DEBUG stpipe.Detector1Pipeline.saturation:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.saturation:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.saturation:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.saturation:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 INFO stpipe.Detector1Pipeline.saturation:saturation.py:208 Detected 99307 saturated pixels INFO stpipe.Detector1Pipeline.saturation:saturation.py:208 Detected 99307 saturated pixels INFO stpipe.Detector1Pipeline.saturation:saturation.py:210 Detected 0 A/D floor pixels INFO stpipe.Detector1Pipeline.saturation:saturation.py:210 Detected 0 A/D floor pixels INFO stpipe.Detector1Pipeline.saturation:step.py:1016 Saved model in jw0010010_11010_nrs1_chimera_saturation.fits INFO stpipe.Detector1Pipeline.saturation:step.py:546 Step saturation done INFO stpipe.Detector1Pipeline.ipc:step.py:430 Step ipc running with args (<RampModel(1, 7, 3200, 2048) from jw0010010_11010_nrs1_chimera_saturation.fits>,). INFO stpipe.Detector1Pipeline.ipc:step.py:434 Step ipc parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'} INFO stpipe.Detector1Pipeline.ipc:step.py:464 Step skipped. INFO stpipe.Detector1Pipeline.ipc:step.py:546 Step ipc done INFO stpipe.Detector1Pipeline.superbias:step.py:430 Step superbias running with args (<RampModel(1, 7, 3200, 2048) from jw0010010_11010_nrs1_chimera_saturation.fits>,). INFO stpipe.Detector1Pipeline.superbias:step.py:434 Step superbias parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'} INFO stpipe.Detector1Pipeline.superbias:superbias_step.py:29 Using SUPERBIAS reference file /grp/crds/cache/references/jwst/jwst_nirspec_superbias_0117.fits DEBUG stpipe.Detector1Pipeline.superbias:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.superbias:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.superbias:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.superbias:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 INFO stpipe.Detector1Pipeline.superbias:step.py:1016 Saved model in jw0010010_11010_nrs1_chimera_superbias.fits INFO stpipe.Detector1Pipeline.superbias:step.py:546 Step superbias done INFO stpipe.Detector1Pipeline.refpix:step.py:430 Step refpix running with args (<RampModel(1, 7, 3200, 2048) from jw0010010_11010_nrs1_chimera_superbias.fits>,). INFO stpipe.Detector1Pipeline.refpix:step.py:434 Step refpix parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True} INFO stpipe.Detector1Pipeline.refpix:refpix_step.py:38 Using refpix reference file: /grp/crds/cache/references/jwst/jwst_nirspec_refpix_0019.fits DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:335 output 1 odd_even 1 mask 1048608 DQ bits [5, 20] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:335 output 1 odd_even 1 mask 1048608 DQ bits [5, 20] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 748 749 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 748 749 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 1048 1049 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 1048 1049 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:335 output 1 odd_even 2 mask 0 DQ bits [] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:335 output 1 odd_even 2 mask 0 DQ bits [] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:335 output 2 odd_even 1 mask 8464 DQ bits [18, 23, 27] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:335 output 2 odd_even 1 mask 8464 DQ bits [18, 23, 27] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 1650 1651 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 1650 1651 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 1750 1751 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 1750 1751 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 1830 1831 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 1830 1831 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:335 output 2 odd_even 2 mask 8 DQ bits [28] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:335 output 2 odd_even 2 mask 8 DQ bits [28] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 1848 1849 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 1848 1849 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:335 output 3 odd_even 1 mask 16448 DQ bits [6, 14] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:335 output 3 odd_even 1 mask 16448 DQ bits [6, 14] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 2048 2049 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 2048 2049 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 2208 2209 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 2208 2209 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:335 output 3 odd_even 2 mask 33554944 DQ bits [9, 25] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:335 output 3 odd_even 2 mask 33554944 DQ bits [9, 25] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 2110 2111 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 2110 2111 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 2430 2431 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 2430 2431 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:335 output 4 odd_even 1 mask 8 DQ bits [28] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:335 output 4 odd_even 1 mask 8 DQ bits [28] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 3130 3131 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 3130 3131 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:335 output 4 odd_even 2 mask 32897 DQ bits [16, 24, 31] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:335 output 4 odd_even 2 mask 32897 DQ bits [16, 24, 31] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 2888 2889 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 2888 2889 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 3048 3049 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 3048 3049 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 3188 3189 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 3188 3189 INFO stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:143 Working on integration 1 INFO stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:143 Working on integration 1 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:574 processing sector 1 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:574 processing sector 1 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:574 processing sector 2 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:574 processing sector 2 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:574 processing sector 3 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:574 processing sector 3 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:574 processing sector 4 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:574 processing sector 4 INFO stpipe.Detector1Pipeline.refpix:step.py:1016 Saved model in jw0010010_11010_nrs1_chimera_refpix.fits INFO stpipe.Detector1Pipeline.refpix:step.py:546 Step refpix done INFO stpipe.Detector1Pipeline.linearity:step.py:430 Step linearity running with args (<RampModel(1, 7, 3200, 2048) from jw0010010_11010_nrs1_chimera_refpix.fits>,). INFO stpipe.Detector1Pipeline.linearity:step.py:434 Step linearity parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'} INFO stpipe.Detector1Pipeline.linearity:linearity_step.py:25 Using Linearity reference file /grp/crds/cache/references/jwst/jwst_nirspec_linearity_0022.fits WARNING stpipe.Detector1Pipeline.linearity:dynamicdq.py:42 Keyword BAD_LIN_CORR does not correspond to an existing DQ mnemonic, so will be ignored WARNING stpipe.Detector1Pipeline.linearity:dynamicdq.py:42 Keyword BAD_LIN_CORR does not correspond to an existing DQ mnemonic, so will be ignored DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 INFO stpipe.Detector1Pipeline.linearity:step.py:1016 Saved model in jw0010010_11010_nrs1_chimera_linearity.fits INFO stpipe.Detector1Pipeline.linearity:step.py:546 Step linearity done INFO stpipe.Detector1Pipeline.dark_current:step.py:430 Step dark_current running with args (<RampModel(1, 7, 3200, 2048) from jw0010010_11010_nrs1_chimera_linearity.fits>,). INFO stpipe.Detector1Pipeline.dark_current:step.py:434 Step dark_current parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'dark_output': None} INFO stpipe.Detector1Pipeline.dark_current:dark_current_step.py:30 Using DARK reference file /grp/crds/cache/references/jwst/jwst_nirspec_dark_0088.fits INFO stpipe.Detector1Pipeline.dark_current:dark_sub.py:88 Science data nints=1, ngroups=7, nframes=1, groupgap=0 INFO stpipe.Detector1Pipeline.dark_current:dark_sub.py:88 Science data nints=1, ngroups=7, nframes=1, groupgap=0 INFO stpipe.Detector1Pipeline.dark_current:dark_sub.py:92 Dark data nints=1, ngroups=65, nframes=1, groupgap=0 INFO stpipe.Detector1Pipeline.dark_current:dark_sub.py:92 Dark data nints=1, ngroups=65, nframes=1, groupgap=0 DEBUG stpipe.Detector1Pipeline.dark_current:dark_sub.py:348 subtract_dark: nints=1, ngroups=7, size=2048,2048 DEBUG stpipe.Detector1Pipeline.dark_current:dark_sub.py:348 subtract_dark: nints=1, ngroups=7, size=2048,2048 INFO stpipe.Detector1Pipeline.dark_current:step.py:1016 Saved model in jw0010010_11010_nrs1_chimera_dark_current.fits INFO stpipe.Detector1Pipeline.dark_current:step.py:546 Step dark_current done INFO stpipe.Detector1Pipeline.jump:step.py:430 Step jump running with args (<RampModel(1, 7, 3200, 2048) from jw0010010_11010_nrs1_chimera_dark_current.fits>,). INFO stpipe.Detector1Pipeline.jump:step.py:434 Step jump parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'rejection_threshold': 200.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0, 'after_jump_flag_dn1': 0.0, 'after_jump_flag_time1': 0.0, 'after_jump_flag_dn2': 0.0, 'after_jump_flag_time2': 0.0} INFO stpipe.Detector1Pipeline.jump:jump_step.py:61 CR rejection threshold = 200 sigma INFO stpipe.Detector1Pipeline.jump:jump_step.py:67 Using GAIN reference file: /grp/crds/cache/references/jwst/jwst_nirspec_gain_0023.fits INFO stpipe.Detector1Pipeline.jump:jump_step.py:73 Using READNOISE reference file: /grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0018.fits DEBUG stpipe.Detector1Pipeline.jump:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.jump:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.jump:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.jump:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.jump:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.jump:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.jump:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.jump:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 INFO stpipe.Detector1Pipeline.jump:jump.py:142 Executing two-point difference method INFO stpipe.Detector1Pipeline.jump:jump.py:142 Executing two-point difference method INFO stpipe.Detector1Pipeline.jump:twopoint_difference.py:124 Working on integration 1: INFO stpipe.Detector1Pipeline.jump:twopoint_difference.py:124 Working on integration 1: INFO stpipe.Detector1Pipeline.jump:twopoint_difference.py:167 From highest outlier, two-point found 106 pixels with at least one CR from five or more groups. INFO stpipe.Detector1Pipeline.jump:twopoint_difference.py:167 From highest outlier, two-point found 106 pixels with at least one CR from five or more groups. INFO stpipe.Detector1Pipeline.jump:twopoint_difference.py:168 From highest outlier, two-point found 810 pixels with at least one CR from four groups. INFO stpipe.Detector1Pipeline.jump:twopoint_difference.py:168 From highest outlier, two-point found 810 pixels with at least one CR from four groups. INFO stpipe.Detector1Pipeline.jump:twopoint_difference.py:169 From highest outlier, two-point found 970 pixels with at least one CR from three groups. INFO stpipe.Detector1Pipeline.jump:twopoint_difference.py:169 From highest outlier, two-point found 970 pixels with at least one CR from three groups. INFO stpipe.Detector1Pipeline.jump:jump.py:255 Total elapsed time = 3.32453 sec INFO stpipe.Detector1Pipeline.jump:jump.py:255 Total elapsed time = 3.32453 sec INFO stpipe.Detector1Pipeline.jump:jump_step.py:89 The execution time in seconds: 4.406409 INFO stpipe.Detector1Pipeline.jump:step.py:1016 Saved model in jw0010010_11010_nrs1_chimera_jump.fits INFO stpipe.Detector1Pipeline.jump:step.py:546 Step jump done INFO stpipe.Detector1Pipeline.ramp_fit:step.py:430 Step ramp_fit running with args (<RampModel(1, 7, 3200, 2048) from jw0010010_11010_nrs1_chimera_jump.fits>,). INFO stpipe.Detector1Pipeline.ramp_fit:step.py:434 Step ramp_fit parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'int_name': '', 'save_opt': False, 'opt_name': '', 'suppress_one_group': True, 'maximum_cores': 'none'} INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:213 Using READNOISE reference file: /grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0018.fits INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:213 Using READNOISE reference file: /grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0018.fits INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:214 Using GAIN reference file: /grp/crds/cache/references/jwst/jwst_nirspec_gain_0023.fits INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:214 Using GAIN reference file: /grp/crds/cache/references/jwst/jwst_nirspec_gain_0023.fits DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:231 Using algorithm = ols INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:231 Using algorithm = ols INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:232 Using weighting = optimal INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:232 Using weighting = optimal DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1235 Missing keyword DRPFRMS1, so setting to default value of 0 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1235 Missing keyword DRPFRMS1, so setting to default value of 0 DEBUG stpipe.Detector1Pipeline.ramp_fit:utils.py:1250 The number of pixels having insufficient data DEBUG stpipe.Detector1Pipeline.ramp_fit:utils.py:1250 The number of pixels having insufficient data DEBUG stpipe.Detector1Pipeline.ramp_fit:utils.py:1251 due to excessive CRs or saturation 88862: DEBUG stpipe.Detector1Pipeline.ramp_fit:utils.py:1251 due to excessive CRs or saturation 88862: DEBUG stpipe.Detector1Pipeline.ramp_fit:utils.py:1252 Count rates - min, mean, max, std: -234049896448.000000, -55691.203125, 90292648.000000, 114282168.000000 DEBUG stpipe.Detector1Pipeline.ramp_fit:utils.py:1252 Count rates - min, mean, max, std: -234049896448.000000, -55691.203125, 90292648.000000, 114282168.000000 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1377 Instrument: NIRSPEC DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1377 Instrument: NIRSPEC DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1378 Number of pixels in 2D array: 4194304 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1378 Number of pixels in 2D array: 4194304 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1379 Shape of 2D image: (2048, 2048) DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1379 Shape of 2D image: (2048, 2048) DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1380 Shape of data cube: (7, 2048, 2048) DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1380 Shape of data cube: (7, 2048, 2048) DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1381 Buffer size (bytes): 307200000 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1381 Buffer size (bytes): 307200000 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1382 Number of rows per buffer: 2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1382 Number of rows per buffer: 2048 INFO stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1383 Number of groups per integration: 7 INFO stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1383 Number of groups per integration: 7 INFO stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1384 Number of integrations: 1 INFO stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1384 Number of integrations: 1 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1385 The execution time in seconds: 33.325499 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1385 The execution time in seconds: 33.325499 INFO stpipe.Detector1Pipeline.ramp_fit:step.py:1016 Saved model in jw0010010_11010_nrs1_chimera_0_ramp_fit.fits INFO stpipe.Detector1Pipeline.ramp_fit:step.py:1016 Saved model in jw0010010_11010_nrs1_chimera_1_ramp_fit.fits INFO stpipe.Detector1Pipeline.ramp_fit:step.py:546 Step ramp_fit done INFO stpipe.Detector1Pipeline.gain_scale:step.py:430 Step gain_scale running with args (<ImageModel(2048, 2048) from jw0010010_11010_nrs1_chimera_0_ramp_fit.fits>,). INFO stpipe.Detector1Pipeline.gain_scale:step.py:434 Step gain_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'gain_scale', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'} INFO stpipe.Detector1Pipeline.gain_scale:gain_scale.py:32 Rescaling by 1.0 INFO stpipe.Detector1Pipeline.gain_scale:gain_scale.py:32 Rescaling by 1.0 INFO stpipe.Detector1Pipeline.gain_scale:step.py:1016 Saved model in jw0010010_11010_nrs1_chimera_gain_scale.fits INFO stpipe.Detector1Pipeline.gain_scale:step.py:546 Step gain_scale done INFO stpipe.Detector1Pipeline.gain_scale:step.py:430 Step gain_scale running with args (<CubeModel(1, 2048, 2048) from jw0010010_11010_nrs1_chimera_1_ramp_fit.fits>,). INFO stpipe.Detector1Pipeline.gain_scale:step.py:434 Step gain_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'gain_scaleints', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'} INFO stpipe.Detector1Pipeline.gain_scale:gain_scale.py:32 Rescaling by 1.0 INFO stpipe.Detector1Pipeline.gain_scale:gain_scale.py:32 Rescaling by 1.0 INFO stpipe.Detector1Pipeline.gain_scale:step.py:1016 Saved model in jw0010010_11010_nrs1_chimera_gain_scaleints.fits INFO stpipe.Detector1Pipeline.gain_scale:step.py:546 Step gain_scale done INFO stpipe.Detector1Pipeline:step.py:1016 Saved model in jw0010010_11010_nrs1_chimera_rateints.fits INFO stpipe.Detector1Pipeline:calwebb_detector1.py:153 ... ending calwebb_detector1 INFO stpipe.Detector1Pipeline:calwebb_detector1.py:153 ... ending calwebb_detector1 INFO stpipe.Detector1Pipeline:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Detector1Pipeline:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Detector1Pipeline:step.py:1016 Saved model in jw0010010_11010_nrs1_chimera_rate.fits INFO stpipe.Detector1Pipeline:step.py:546 Step Detector1Pipeline done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_irs2_detector1.py::test_nirspec_irs2_detector1[saturation] | 7.72 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_irs2_detector1.py::test_nirspec_irs2_detector1[superbias] | 5.81 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_irs2_detector1.py::test_nirspec_irs2_detector1[refpix] | 3.46 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_irs2_detector1.py::test_nirspec_irs2_detector1[linearity] | 3.22 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_irs2_detector1.py::test_nirspec_irs2_detector1[dark_current] | 3.88 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_irs2_detector1.py::test_nirspec_irs2_detector1[jump] | 4.17 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_irs2_detector1.py::test_nirspec_irs2_detector1[0_ramp_fit] | 1.18 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_irs2_detector1.py::test_nirspec_irs2_detector1[gain_scale] | 1.25 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_irs2_detector1.py::test_nirspec_irs2_detector1[rate] | 0.96 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_lamp_fs_spec2.py::test_nirspec_lamp_fs_spec2[assign_wcs] | 23.57 | |
|
-----------------------------Captured stderr setup------------------------------ 2022-10-06 04:34:18,308 - stpipe - INFO - PARS-SPEC2PIPELINE parameters found: /grp/crds/cache/references/jwst/jwst_nirspec_pars-spec2pipeline_0021.asdf 2022-10-06 04:34:18,358 - stpipe.Spec2Pipeline - INFO - Spec2Pipeline instance created. 2022-10-06 04:34:18,359 - stpipe.Spec2Pipeline.bkg_subtract - INFO - BackgroundStep instance created. 2022-10-06 04:34:18,360 - stpipe.Spec2Pipeline.assign_wcs - INFO - AssignWcsStep instance created. 2022-10-06 04:34:18,361 - stpipe.Spec2Pipeline.imprint_subtract - INFO - ImprintStep instance created. 2022-10-06 04:34:18,362 - stpipe.Spec2Pipeline.msa_flagging - INFO - MSAFlagOpenStep instance created. 2022-10-06 04:34:18,363 - stpipe.Spec2Pipeline.extract_2d - INFO - Extract2dStep instance created. 2022-10-06 04:34:18,365 - stpipe.Spec2Pipeline.master_background_mos - INFO - MasterBackgroundMosStep instance created. 2022-10-06 04:34:18,366 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - FlatFieldStep instance created. 2022-10-06 04:34:18,367 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - PathLossStep instance created. 2022-10-06 04:34:18,367 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - BarShadowStep instance created. 2022-10-06 04:34:18,368 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - PhotomStep instance created. 2022-10-06 04:34:18,369 - stpipe.Spec2Pipeline.wavecorr - INFO - WavecorrStep instance created. 2022-10-06 04:34:18,369 - stpipe.Spec2Pipeline.flat_field - INFO - FlatFieldStep instance created. 2022-10-06 04:34:18,370 - stpipe.Spec2Pipeline.srctype - INFO - SourceTypeStep instance created. 2022-10-06 04:34:18,371 - stpipe.Spec2Pipeline.straylight - INFO - StraylightStep instance created. 2022-10-06 04:34:18,372 - stpipe.Spec2Pipeline.fringe - INFO - FringeStep instance created. 2022-10-06 04:34:18,372 - stpipe.Spec2Pipeline.pathloss - INFO - PathLossStep instance created. 2022-10-06 04:34:18,373 - stpipe.Spec2Pipeline.barshadow - INFO - BarShadowStep instance created. 2022-10-06 04:34:18,374 - stpipe.Spec2Pipeline.wfss_contam - INFO - WfssContamStep instance created. 2022-10-06 04:34:18,375 - stpipe.Spec2Pipeline.photom - INFO - PhotomStep instance created. 2022-10-06 04:34:18,376 - stpipe.Spec2Pipeline.resample_spec - INFO - ResampleSpecStep instance created. 2022-10-06 04:34:18,377 - stpipe.Spec2Pipeline.cube_build - INFO - CubeBuildStep instance created. 2022-10-06 04:34:18,379 - stpipe.Spec2Pipeline.extract_1d - INFO - Extract1dStep instance created. 2022-10-06 04:34:18,602 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0/jw84600010001_02101_00004_nrs2_rate.fits',). 2022-10-06 04:34:18,615 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'save_bsub': False, 'fail_on_exception': True, 'save_wfss_esec': False, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000}, 'master_background_mos': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'source_type': None}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0'}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'wfss_contam': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'save_simulated_image': False, 'save_contam_images': False, 'maximum_cores': 'none'}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'drizzle', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': False, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None}}} 2022-10-06 04:34:18,841 - stpipe.Spec2Pipeline - INFO - Prefetching reference files for dataset: 'jw84600010001_02101_00004_nrs2_rate.fits' reftypes = ['apcorr', 'camera', 'collimator', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'ote', 'regions', 'sflat', 'speckernel', 'specprofile', 'spectrace', 'specwcs', 'wavelengthrange', 'wavemap'] 2022-10-06 04:34:18,854 - stpipe.Spec2Pipeline - INFO - Prefetch for APCORR reference file is 'N/A'. 2022-10-06 04:34:18,854 - stpipe.Spec2Pipeline - INFO - Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. 2022-10-06 04:34:18,855 - stpipe.Spec2Pipeline - INFO - Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. 2022-10-06 04:34:18,857 - stpipe.Spec2Pipeline - INFO - Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0002.fits'. 2022-10-06 04:34:18,858 - stpipe.Spec2Pipeline - INFO - Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0032.asdf'. 2022-10-06 04:34:18,859 - stpipe.Spec2Pipeline - INFO - Prefetch for DISTORTION reference file is 'N/A'. 2022-10-06 04:34:18,859 - stpipe.Spec2Pipeline - INFO - Prefetch for DRIZPARS reference file is 'N/A'. 2022-10-06 04:34:18,859 - stpipe.Spec2Pipeline - INFO - Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0004.json'. 2022-10-06 04:34:18,860 - stpipe.Spec2Pipeline - INFO - Prefetch for FFLAT reference file is 'N/A'. 2022-10-06 04:34:18,861 - stpipe.Spec2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is 'N/A'. 2022-10-06 04:34:18,861 - stpipe.Spec2Pipeline - INFO - Prefetch for FLAT reference file is 'N/A'. 2022-10-06 04:34:18,861 - stpipe.Spec2Pipeline - INFO - Prefetch for FORE reference file is 'N/A'. 2022-10-06 04:34:18,861 - stpipe.Spec2Pipeline - INFO - Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. 2022-10-06 04:34:18,862 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'. 2022-10-06 04:34:18,862 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'. 2022-10-06 04:34:18,862 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'. 2022-10-06 04:34:18,862 - stpipe.Spec2Pipeline - INFO - Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. 2022-10-06 04:34:18,864 - stpipe.Spec2Pipeline - INFO - Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. 2022-10-06 04:34:18,865 - stpipe.Spec2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'. 2022-10-06 04:34:18,865 - stpipe.Spec2Pipeline - INFO - Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0050.fits'. 2022-10-06 04:34:18,867 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECKERNEL reference file is 'N/A'. 2022-10-06 04:34:18,867 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECPROFILE reference file is 'N/A'. 2022-10-06 04:34:18,867 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECTRACE reference file is 'N/A'. 2022-10-06 04:34:18,867 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'. 2022-10-06 04:34:18,867 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. 2022-10-06 04:34:18,868 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVEMAP reference file is 'N/A'. 2022-10-06 04:34:18,868 - stpipe.Spec2Pipeline - INFO - Starting calwebb_spec2 ... 2022-10-06 04:34:18,869 - stpipe.Spec2Pipeline - INFO - Processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0/jw84600010001_02101_00004_nrs2 2022-10-06 04:34:18,869 - stpipe.Spec2Pipeline - INFO - Working on input /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0/jw84600010001_02101_00004_nrs2_rate.fits ... 2022-10-06 04:34:19,261 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(2048, 2048) from jw84600010001_02101_00004_nrs2_rate.fits>,). 2022-10-06 04:34:19,262 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} 2022-10-06 04:34:19,435 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_ytilt is 0.1260581909999999 deg 2022-10-06 04:34:19,435 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.331661224 deg 2022-10-06 04:34:19,436 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_y correction: 0.0002496104076275666 deg 2022-10-06 04:34:19,437 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_x correction: 0.0 deg 2022-10-06 04:34:19,627 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit S200A1 from the list of open slits because the WCS bounding_box is completely outside the detector. 2022-10-06 04:34:19,641 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit S200A2 from the list of open slits because the WCS bounding_box is completely outside the detector. 2022-10-06 04:34:19,654 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit S400A1 from the list of open slits because the WCS bounding_box is completely outside the detector. 2022-10-06 04:34:19,668 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit S1600A1 from the list of open slits because the WCS bounding_box is completely outside the detector. 2022-10-06 04:34:19,680 - stpipe.Spec2Pipeline.assign_wcs - INFO - Slits projected on detector NRS2: ['S200B1'] 2022-10-06 04:34:19,681 - stpipe.Spec2Pipeline.assign_wcs - INFO - Computing WCS for 1 open slitlets 2022-10-06 04:34:19,717 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_ytilt is 0.1260581909999999 deg 2022-10-06 04:34:19,717 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.331661224 deg 2022-10-06 04:34:19,718 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_y correction: 0.0002496104076275666 deg 2022-10-06 04:34:19,719 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_x correction: 0.0 deg 2022-10-06 04:34:19,732 - stpipe.Spec2Pipeline.assign_wcs - INFO - SPORDER= -1, wrange=[1e-06, 1.8e-06] 2022-10-06 04:34:19,884 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 1 2022-10-06 04:34:19,884 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 2 2022-10-06 04:34:19,884 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 3 2022-10-06 04:34:19,884 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 4 2022-10-06 04:34:19,884 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 1 open slits in quadrant 5 2022-10-06 04:34:19,930 - stpipe.Spec2Pipeline.assign_wcs - INFO - Created a NIRSPEC nrs_autowave pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0032.asdf', 'fore': None, 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} 2022-10-06 04:34:20,071 - stpipe.Spec2Pipeline.assign_wcs - INFO - COMPLETED assign_wcs 2022-10-06 04:34:20,360 - stpipe.Spec2Pipeline.assign_wcs - INFO - Saved model in jw84600010001_02101_00004_nrs2_assign_wcs.fits 2022-10-06 04:34:20,360 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs done 2022-10-06 04:34:20,599 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract running with args (<ImageModel(2048, 2048) from jw84600010001_02101_00004_nrs2_assign_wcs.fits>, []). 2022-10-06 04:34:20,600 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None} 2022-10-06 04:34:20,601 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step skipped. 2022-10-06 04:34:20,603 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract done 2022-10-06 04:34:20,757 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract running with args (<ImageModel(2048, 2048) from jw84600010001_02101_00004_nrs2_assign_wcs.fits>, []). 2022-10-06 04:34:20,758 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0'} 2022-10-06 04:34:20,758 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step skipped. 2022-10-06 04:34:20,761 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract done 2022-10-06 04:34:20,917 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging running with args (<ImageModel(2048, 2048) from jw84600010001_02101_00004_nrs2_assign_wcs.fits>,). 2022-10-06 04:34:20,918 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0'} 2022-10-06 04:34:20,918 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step skipped. 2022-10-06 04:34:20,921 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging done 2022-10-06 04:34:21,082 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d running with args (<ImageModel(2048, 2048) from jw84600010001_02101_00004_nrs2_assign_wcs.fits>,). 2022-10-06 04:34:21,083 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000} 2022-10-06 04:34:21,100 - stpipe.Spec2Pipeline.extract_2d - INFO - EXP_TYPE is NRS_AUTOWAVE 2022-10-06 04:34:21,203 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: S200B1 2022-10-06 04:34:21,203 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 39 1325 2022-10-06 04:34:21,203 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 918 965 2022-10-06 04:34:21,354 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2022-10-06 04:34:21,615 - stpipe.Spec2Pipeline.extract_2d - INFO - Saved model in jw84600010001_02101_00004_nrs2_extract_2d.fits 2022-10-06 04:34:21,615 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d done 2022-10-06 04:34:21,792 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype running with args (<MultiSlitModel from jw84600010001_02101_00004_nrs2_extract_2d.fits>,). 2022-10-06 04:34:21,793 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'source_type': None} 2022-10-06 04:34:21,793 - stpipe.Spec2Pipeline.srctype - INFO - Step skipped. 2022-10-06 04:34:21,795 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype done 2022-10-06 04:34:21,950 - stpipe.Spec2Pipeline.master_background_mos - INFO - Step master_background_mos running with args (<MultiSlitModel from jw84600010001_02101_00004_nrs2_extract_2d.fits>,). 2022-10-06 04:34:21,953 - stpipe.Spec2Pipeline.master_background_mos - INFO - Step master_background_mos parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None}}} 2022-10-06 04:34:21,953 - stpipe.Spec2Pipeline.master_background_mos - INFO - Step skipped. 2022-10-06 04:34:21,954 - stpipe.Spec2Pipeline.master_background_mos - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:34:21,954 - stpipe.Spec2Pipeline.master_background_mos - INFO - Step master_background_mos done 2022-10-06 04:34:22,107 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr running with args (<MultiSlitModel from jw84600010001_02101_00004_nrs2_extract_2d.fits>,). 2022-10-06 04:34:22,108 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0'} 2022-10-06 04:34:22,108 - stpipe.Spec2Pipeline.wavecorr - INFO - Step skipped. 2022-10-06 04:34:22,111 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr done 2022-10-06 04:34:22,293 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field running with args (<MultiSlitModel from jw84600010001_02101_00004_nrs2_extract_2d.fits>,). 2022-10-06 04:34:22,294 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2022-10-06 04:34:27,419 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit S200B1 2022-10-06 04:34:37,356 - stpipe.Spec2Pipeline.flat_field - INFO - Saved model in jw84600010001_02101_00004_nrs2_flat_field.fits 2022-10-06 04:34:37,356 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field done 2022-10-06 04:34:37,608 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss running with args (<MultiSlitModel from jw84600010001_02101_00004_nrs2_flat_field.fits>,). 2022-10-06 04:34:37,610 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None} 2022-10-06 04:34:37,610 - stpipe.Spec2Pipeline.pathloss - INFO - Step skipped. 2022-10-06 04:34:37,612 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss done 2022-10-06 04:34:37,776 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow running with args (<MultiSlitModel from jw84600010001_02101_00004_nrs2_flat_field.fits>,). 2022-10-06 04:34:37,777 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None} 2022-10-06 04:34:37,777 - stpipe.Spec2Pipeline.barshadow - INFO - Step skipped. 2022-10-06 04:34:37,780 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow done 2022-10-06 04:34:37,936 - stpipe.Spec2Pipeline.photom - INFO - Step photom running with args (<MultiSlitModel from jw84600010001_02101_00004_nrs2_flat_field.fits>,). 2022-10-06 04:34:37,936 - stpipe.Spec2Pipeline.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None} 2022-10-06 04:34:37,936 - stpipe.Spec2Pipeline.photom - INFO - Step skipped. 2022-10-06 04:34:37,939 - stpipe.Spec2Pipeline.photom - INFO - Step photom done 2022-10-06 04:34:38,100 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec running with args (<MultiSlitModel from jw84600010001_02101_00004_nrs2_cal.fits>,). 2022-10-06 04:34:38,102 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True} 2022-10-06 04:34:38,132 - stpipe.Spec2Pipeline.resample_spec - INFO - No DRIZPARS reffile 2022-10-06 04:34:38,133 - stpipe.Spec2Pipeline.resample_spec - INFO - using: pixfrac=1.0 2022-10-06 04:34:38,133 - stpipe.Spec2Pipeline.resample_spec - INFO - using: kernel='square' 2022-10-06 04:34:38,133 - stpipe.Spec2Pipeline.resample_spec - INFO - using: fillval='INDEF' 2022-10-06 04:34:38,133 - stpipe.Spec2Pipeline.resample_spec - INFO - using: wht_type='ivm' 2022-10-06 04:34:38,133 - stpipe.Spec2Pipeline.resample_spec - INFO - using: pscale_ratio=1.0 2022-10-06 04:34:38,133 - stpipe.Spec2Pipeline.resample_spec - INFO - Reorganizing data from exposure jw84600010001_02101_00004_nrs2_cal.fits 2022-10-06 04:34:38,339 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter kernal: square 2022-10-06 04:34:38,339 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter pixfrac: 1.0 2022-10-06 04:34:38,339 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter fillval: INDEF 2022-10-06 04:34:38,339 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter weight_type: ivm 2022-10-06 04:34:38,380 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2022-10-06 04:34:38,411 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (47, 1286) --> (34, 1286) 2022-10-06 04:34:38,421 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2022-10-06 04:34:38,450 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (47, 1286) --> (34, 1286) 2022-10-06 04:34:38,463 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2022-10-06 04:34:38,493 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (47, 1286) --> (34, 1286) 2022-10-06 04:34:38,505 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2022-10-06 04:34:38,534 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (47, 1286) --> (34, 1286) 2022-10-06 04:34:38,564 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 359.965324745 0.002076365 -0.034675255 0.002076365 -0.034675255 0.003415151 359.965324745 0.003415151 2022-10-06 04:34:38,698 - stpipe.Spec2Pipeline.resample_spec - INFO - Saved model in jw84600010001_02101_00004_nrs2_s2d.fits 2022-10-06 04:34:38,698 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec done 2022-10-06 04:34:38,870 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d running with args (<MultiSlitModel from jw84600010001_02101_00004_nrs2_s2d.fits>,). 2022-10-06 04:34:38,871 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': False, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None} 2022-10-06 04:34:38,890 - stpipe.Spec2Pipeline.extract_1d - INFO - Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0004.json 2022-10-06 04:34:38,890 - stpipe.Spec2Pipeline.extract_1d - INFO - APCORR reference file name is "N/A" 2022-10-06 04:34:38,890 - stpipe.Spec2Pipeline.extract_1d - INFO - APCORR will NOT be applied 2022-10-06 04:34:38,905 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit S200B1 2022-10-06 04:34:38,906 - stpipe.Spec2Pipeline.extract_1d - WARNING - The photom step has not been run. 2022-10-06 04:34:38,906 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type None 2022-10-06 04:34:38,913 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: xstart=0, xstop=1285, ystart=13.5, ystop=19.5 2022-10-06 04:34:39,220 - stpipe.Spec2Pipeline.extract_1d - INFO - Saved model in jw84600010001_02101_00004_nrs2_x1d.fits 2022-10-06 04:34:39,220 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d done 2022-10-06 04:34:39,220 - stpipe.Spec2Pipeline - INFO - Finished processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0/jw84600010001_02101_00004_nrs2 2022-10-06 04:34:39,220 - stpipe.Spec2Pipeline - INFO - Ending calwebb_spec2 2022-10-06 04:34:39,220 - stpipe.Spec2Pipeline - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:34:39,453 - stpipe.Spec2Pipeline - INFO - Saved model in jw84600010001_02101_00004_nrs2_cal.fits 2022-10-06 04:34:39,453 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline done -------------------------------Captured log setup------------------------------- INFO stpipe:pipeline.py:208 PARS-SPEC2PIPELINE parameters found: /grp/crds/cache/references/jwst/jwst_nirspec_pars-spec2pipeline_0021.asdf INFO stpipe.Spec2Pipeline:step.py:366 Spec2Pipeline instance created. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:366 BackgroundStep instance created. INFO stpipe.Spec2Pipeline.assign_wcs:step.py:366 AssignWcsStep instance created. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:366 ImprintStep instance created. INFO stpipe.Spec2Pipeline.msa_flagging:step.py:366 MSAFlagOpenStep instance created. INFO stpipe.Spec2Pipeline.extract_2d:step.py:366 Extract2dStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos:step.py:366 MasterBackgroundMosStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:step.py:366 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:step.py:366 PathLossStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:step.py:366 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.photom:step.py:366 PhotomStep instance created. INFO stpipe.Spec2Pipeline.wavecorr:step.py:366 WavecorrStep instance created. INFO stpipe.Spec2Pipeline.flat_field:step.py:366 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.srctype:step.py:366 SourceTypeStep instance created. INFO stpipe.Spec2Pipeline.straylight:step.py:366 StraylightStep instance created. INFO stpipe.Spec2Pipeline.fringe:step.py:366 FringeStep instance created. INFO stpipe.Spec2Pipeline.pathloss:step.py:366 PathLossStep instance created. INFO stpipe.Spec2Pipeline.barshadow:step.py:366 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.wfss_contam:step.py:366 WfssContamStep instance created. INFO stpipe.Spec2Pipeline.photom:step.py:366 PhotomStep instance created. INFO stpipe.Spec2Pipeline.resample_spec:step.py:366 ResampleSpecStep instance created. INFO stpipe.Spec2Pipeline.cube_build:step.py:366 CubeBuildStep instance created. INFO stpipe.Spec2Pipeline.extract_1d:step.py:366 Extract1dStep instance created. INFO stpipe.Spec2Pipeline:step.py:430 Step Spec2Pipeline running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0/jw84600010001_02101_00004_nrs2_rate.fits',). INFO stpipe.Spec2Pipeline:step.py:434 Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'save_bsub': False, 'fail_on_exception': True, 'save_wfss_esec': False, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000}, 'master_background_mos': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'source_type': None}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0'}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'wfss_contam': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'save_simulated_image': False, 'save_contam_images': False, 'maximum_cores': 'none'}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'drizzle', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': False, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None}}} INFO stpipe.Spec2Pipeline:pipeline.py:358 Prefetching reference files for dataset: 'jw84600010001_02101_00004_nrs2_rate.fits' reftypes = ['apcorr', 'camera', 'collimator', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'ote', 'regions', 'sflat', 'speckernel', 'specprofile', 'spectrace', 'specwcs', 'wavelengthrange', 'wavemap'] INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for APCORR reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0002.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0032.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DISTORTION reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DRIZPARS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0004.json'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FFLAT reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FILTEROFFSET reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FLAT reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FORE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for IFUFORE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for IFUPOST reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for IFUSLICER reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for REGIONS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0050.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECKERNEL reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECPROFILE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECTRACE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECWCS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WAVEMAP reference file is 'N/A'. INFO stpipe.Spec2Pipeline:calwebb_spec2.py:92 Starting calwebb_spec2 ... INFO stpipe.Spec2Pipeline:calwebb_spec2.py:110 Processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0/jw84600010001_02101_00004_nrs2 INFO stpipe.Spec2Pipeline:calwebb_spec2.py:176 Working on input /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0/jw84600010001_02101_00004_nrs2_rate.fits ... DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:391 Science data does not allow master background correction. Skipping "master_background_mos". INFO stpipe.Spec2Pipeline.assign_wcs:step.py:430 Step assign_wcs running with args (<ImageModel(2048, 2048) from jw84600010001_02101_00004_nrs2_rate.fits>,). INFO stpipe.Spec2Pipeline.assign_wcs:step.py:434 Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:80 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0032.asdf', 'fore': 'N/A', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:80 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0032.asdf', 'fore': 'N/A', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1375 gwa_ytilt is 0.1260581909999999 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1375 gwa_ytilt is 0.1260581909999999 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1376 gwa_xtilt is 0.331661224 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1376 gwa_xtilt is 0.331661224 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1380 theta_y correction: 0.0002496104076275666 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1380 theta_y correction: 0.0002496104076275666 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1729 Removing slit S200A1 from the list of open slits because the WCS bounding_box is completely outside the detector. INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1729 Removing slit S200A1 from the list of open slits because the WCS bounding_box is completely outside the detector. INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1729 Removing slit S200A2 from the list of open slits because the WCS bounding_box is completely outside the detector. INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1729 Removing slit S200A2 from the list of open slits because the WCS bounding_box is completely outside the detector. INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1729 Removing slit S400A1 from the list of open slits because the WCS bounding_box is completely outside the detector. INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1729 Removing slit S400A1 from the list of open slits because the WCS bounding_box is completely outside the detector. INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1729 Removing slit S1600A1 from the list of open slits because the WCS bounding_box is completely outside the detector. INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1729 Removing slit S1600A1 from the list of open slits because the WCS bounding_box is completely outside the detector. INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:424 Slits projected on detector NRS2: ['S200B1'] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:424 Slits projected on detector NRS2: ['S200B1'] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:308 Computing WCS for 1 open slitlets INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:308 Computing WCS for 1 open slitlets INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1375 gwa_ytilt is 0.1260581909999999 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1375 gwa_ytilt is 0.1260581909999999 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1376 gwa_xtilt is 0.331661224 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1376 gwa_xtilt is 0.331661224 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1380 theta_y correction: 0.0002496104076275666 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1380 theta_y correction: 0.0002496104076275666 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:330 SPORDER= -1, wrange=[1e-06, 1.8e-06] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:330 SPORDER= -1, wrange=[1e-06, 1.8e-06] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 1 open slits in quadrant 5 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 1 open slits in quadrant 5 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:62 Created a NIRSPEC nrs_autowave pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0032.asdf', 'fore': None, 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:62 Created a NIRSPEC nrs_autowave pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0032.asdf', 'fore': None, 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} INFO stpipe.Spec2Pipeline.assign_wcs:assign_wcs.py:96 COMPLETED assign_wcs INFO stpipe.Spec2Pipeline.assign_wcs:assign_wcs.py:96 COMPLETED assign_wcs INFO stpipe.Spec2Pipeline.assign_wcs:step.py:1016 Saved model in jw84600010001_02101_00004_nrs2_assign_wcs.fits INFO stpipe.Spec2Pipeline.assign_wcs:step.py:546 Step assign_wcs done INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:430 Step bkg_subtract running with args (<ImageModel(2048, 2048) from jw84600010001_02101_00004_nrs2_assign_wcs.fits>, []). INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:434 Step bkg_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None} INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:546 Step bkg_subtract done INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:430 Step imprint_subtract running with args (<ImageModel(2048, 2048) from jw84600010001_02101_00004_nrs2_assign_wcs.fits>, []). INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:434 Step imprint_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0'} INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:546 Step imprint_subtract done INFO stpipe.Spec2Pipeline.msa_flagging:step.py:430 Step msa_flagging running with args (<ImageModel(2048, 2048) from jw84600010001_02101_00004_nrs2_assign_wcs.fits>,). INFO stpipe.Spec2Pipeline.msa_flagging:step.py:434 Step msa_flagging parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0'} INFO stpipe.Spec2Pipeline.msa_flagging:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.msa_flagging:step.py:546 Step msa_flagging done INFO stpipe.Spec2Pipeline.extract_2d:step.py:430 Step extract_2d running with args (<ImageModel(2048, 2048) from jw84600010001_02101_00004_nrs2_assign_wcs.fits>,). INFO stpipe.Spec2Pipeline.extract_2d:step.py:434 Step extract_2d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000} INFO stpipe.Spec2Pipeline.extract_2d:extract_2d.py:61 EXP_TYPE is NRS_AUTOWAVE INFO stpipe.Spec2Pipeline.extract_2d:extract_2d.py:61 EXP_TYPE is NRS_AUTOWAVE INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S200B1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S200B1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 39 1325 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 39 1325 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 918 965 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 918 965 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:step.py:1016 Saved model in jw84600010001_02101_00004_nrs2_extract_2d.fits INFO stpipe.Spec2Pipeline.extract_2d:step.py:546 Step extract_2d done INFO stpipe.Spec2Pipeline.srctype:step.py:430 Step srctype running with args (<MultiSlitModel from jw84600010001_02101_00004_nrs2_extract_2d.fits>,). INFO stpipe.Spec2Pipeline.srctype:step.py:434 Step srctype parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'source_type': None} INFO stpipe.Spec2Pipeline.srctype:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.srctype:step.py:546 Step srctype done INFO stpipe.Spec2Pipeline.master_background_mos:step.py:430 Step master_background_mos running with args (<MultiSlitModel from jw84600010001_02101_00004_nrs2_extract_2d.fits>,). INFO stpipe.Spec2Pipeline.master_background_mos:step.py:434 Step master_background_mos parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None}}} INFO stpipe.Spec2Pipeline.master_background_mos:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.master_background_mos:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Spec2Pipeline.master_background_mos:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Spec2Pipeline.master_background_mos:step.py:546 Step master_background_mos done INFO stpipe.Spec2Pipeline.wavecorr:step.py:430 Step wavecorr running with args (<MultiSlitModel from jw84600010001_02101_00004_nrs2_extract_2d.fits>,). INFO stpipe.Spec2Pipeline.wavecorr:step.py:434 Step wavecorr parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0'} INFO stpipe.Spec2Pipeline.wavecorr:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.wavecorr:step.py:546 Step wavecorr done INFO stpipe.Spec2Pipeline.flat_field:step.py:430 Step flat_field running with args (<MultiSlitModel from jw84600010001_02101_00004_nrs2_extract_2d.fits>,). INFO stpipe.Spec2Pipeline.flat_field:step.py:434 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:74 Input is MultiSlitModel of exposure type NRS_AUTOWAVE DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:201 No reference found for type FLAT DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:201 No reference found for type FFLAT DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:199 Using SFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_sflat_0050.fits DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:199 Using DFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_dflat_0002.fits DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit S200B1 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit S200B1 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 16116 out of 60442 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 16116 out of 60442 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. INFO stpipe.Spec2Pipeline.flat_field:step.py:1016 Saved model in jw84600010001_02101_00004_nrs2_flat_field.fits INFO stpipe.Spec2Pipeline.flat_field:step.py:546 Step flat_field done INFO stpipe.Spec2Pipeline.pathloss:step.py:430 Step pathloss running with args (<MultiSlitModel from jw84600010001_02101_00004_nrs2_flat_field.fits>,). INFO stpipe.Spec2Pipeline.pathloss:step.py:434 Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None} INFO stpipe.Spec2Pipeline.pathloss:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.pathloss:step.py:546 Step pathloss done INFO stpipe.Spec2Pipeline.barshadow:step.py:430 Step barshadow running with args (<MultiSlitModel from jw84600010001_02101_00004_nrs2_flat_field.fits>,). INFO stpipe.Spec2Pipeline.barshadow:step.py:434 Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None} INFO stpipe.Spec2Pipeline.barshadow:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.barshadow:step.py:546 Step barshadow done INFO stpipe.Spec2Pipeline.photom:step.py:430 Step photom running with args (<MultiSlitModel from jw84600010001_02101_00004_nrs2_flat_field.fits>,). INFO stpipe.Spec2Pipeline.photom:step.py:434 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None} INFO stpipe.Spec2Pipeline.photom:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.photom:step.py:546 Step photom done INFO stpipe.Spec2Pipeline.resample_spec:step.py:430 Step resample_spec running with args (<MultiSlitModel from jw84600010001_02101_00004_nrs2_cal.fits>,). INFO stpipe.Spec2Pipeline.resample_spec:step.py:434 Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True} INFO stpipe.Spec2Pipeline.resample_spec:resample_spec_step.py:60 No DRIZPARS reffile INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: pixfrac=1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: pixfrac=1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: kernel='square' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: kernel='square' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: fillval='INDEF' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: fillval='INDEF' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: wht_type='ivm' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: wht_type='ivm' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: pscale_ratio=1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: pscale_ratio=1.0 INFO stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:37 Reorganizing data from exposure jw84600010001_02101_00004_nrs2_cal.fits INFO stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:37 Reorganizing data from exposure jw84600010001_02101_00004_nrs2_cal.fits DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 5 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 5 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1285.5), (-0.5, 46.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1285.5), (-0.5, 46.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (47, 1286) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (47, 1286) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (47, 1286) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (47, 1286) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (34, 1286) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (34, 1286) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (47, 1286) --> (34, 1286) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (47, 1286) --> (34, 1286) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1285.5), (-0.5, 46.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1285.5), (-0.5, 46.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (47, 1286) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (47, 1286) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (47, 1286) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (47, 1286) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (34, 1286) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (34, 1286) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (47, 1286) --> (34, 1286) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (47, 1286) --> (34, 1286) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1285.5), (-0.5, 46.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1285.5), (-0.5, 46.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (47, 1286) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (47, 1286) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (47, 1286) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (47, 1286) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (34, 1286) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (34, 1286) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (47, 1286) --> (34, 1286) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (47, 1286) --> (34, 1286) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1285.5), (-0.5, 46.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1285.5), (-0.5, 46.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (47, 1286) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (47, 1286) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (47, 1286) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (47, 1286) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (34, 1286) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (34, 1286) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (47, 1286) --> (34, 1286) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (47, 1286) --> (34, 1286) INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 359.965324745 0.002076365 -0.034675255 0.002076365 -0.034675255 0.003415151 359.965324745 0.003415151 INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 359.965324745 0.002076365 -0.034675255 0.002076365 -0.034675255 0.003415151 359.965324745 0.003415151 INFO stpipe.Spec2Pipeline.resample_spec:step.py:1016 Saved model in jw84600010001_02101_00004_nrs2_s2d.fits INFO stpipe.Spec2Pipeline.resample_spec:step.py:546 Step resample_spec done INFO stpipe.Spec2Pipeline.extract_1d:step.py:430 Step extract_1d running with args (<MultiSlitModel from jw84600010001_02101_00004_nrs2_s2d.fits>,). INFO stpipe.Spec2Pipeline.extract_1d:step.py:434 Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': False, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None} DEBUG stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:159 Input is a MultiSlitModel INFO stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:389 Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0004.json INFO stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:394 APCORR reference file name is "N/A" INFO stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:395 APCORR will NOT be applied DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2805 Input is a MultiSlitModel. DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2805 Input is a MultiSlitModel. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit S200B1 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit S200B1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:3597 The photom step has not been run. WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:3597 The photom step has not been run. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type None INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[13.0], [20.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[13.0], [20.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1285, ystart=13.5, ystop=19.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1285, ystart=13.5, ystop=19.5 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2952 Not copying from the INT_TIMES table because this is not a TSO exposure. DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2952 Not copying from the INT_TIMES table because this is not a TSO exposure. INFO stpipe.Spec2Pipeline.extract_1d:step.py:1016 Saved model in jw84600010001_02101_00004_nrs2_x1d.fits INFO stpipe.Spec2Pipeline.extract_1d:step.py:546 Step extract_1d done INFO stpipe.Spec2Pipeline:calwebb_spec2.py:314 Finished processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0/jw84600010001_02101_00004_nrs2 INFO stpipe.Spec2Pipeline:calwebb_spec2.py:138 Ending calwebb_spec2 INFO stpipe.Spec2Pipeline:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Spec2Pipeline:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Spec2Pipeline:step.py:1016 Saved model in jw84600010001_02101_00004_nrs2_cal.fits INFO stpipe.Spec2Pipeline:step.py:546 Step Spec2Pipeline done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_lamp_fs_spec2.py::test_nirspec_lamp_fs_spec2[extract_2d] | 0.14 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_lamp_fs_spec2.py::test_nirspec_lamp_fs_spec2[flat_field] | 0.17 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_lamp_fs_spec2.py::test_nirspec_lamp_fs_spec2[cal] | 0.22 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_lamp_fs_spec2.py::test_nirspec_lamp_fs_spec2[x1d] | 0.16 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_lamp_ifu_spec2.py::test_nirspec_lamp_ifu_spec2[assign_wcs] | 572.30 | |
|
-----------------------------Captured stderr setup------------------------------ 2022-10-06 04:34:42,789 - stpipe - INFO - PARS-SPEC2PIPELINE parameters found: /grp/crds/cache/references/jwst/jwst_nirspec_pars-spec2pipeline_0020.asdf 2022-10-06 04:34:42,842 - stpipe.Spec2Pipeline - INFO - Spec2Pipeline instance created. 2022-10-06 04:34:42,843 - stpipe.Spec2Pipeline.bkg_subtract - INFO - BackgroundStep instance created. 2022-10-06 04:34:42,844 - stpipe.Spec2Pipeline.assign_wcs - INFO - AssignWcsStep instance created. 2022-10-06 04:34:42,845 - stpipe.Spec2Pipeline.imprint_subtract - INFO - ImprintStep instance created. 2022-10-06 04:34:42,846 - stpipe.Spec2Pipeline.msa_flagging - INFO - MSAFlagOpenStep instance created. 2022-10-06 04:34:42,846 - stpipe.Spec2Pipeline.extract_2d - INFO - Extract2dStep instance created. 2022-10-06 04:34:42,849 - stpipe.Spec2Pipeline.master_background_mos - INFO - MasterBackgroundMosStep instance created. 2022-10-06 04:34:42,850 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - FlatFieldStep instance created. 2022-10-06 04:34:42,851 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - PathLossStep instance created. 2022-10-06 04:34:42,851 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - BarShadowStep instance created. 2022-10-06 04:34:42,852 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - PhotomStep instance created. 2022-10-06 04:34:42,853 - stpipe.Spec2Pipeline.wavecorr - INFO - WavecorrStep instance created. 2022-10-06 04:34:42,853 - stpipe.Spec2Pipeline.flat_field - INFO - FlatFieldStep instance created. 2022-10-06 04:34:42,854 - stpipe.Spec2Pipeline.srctype - INFO - SourceTypeStep instance created. 2022-10-06 04:34:42,855 - stpipe.Spec2Pipeline.straylight - INFO - StraylightStep instance created. 2022-10-06 04:34:42,856 - stpipe.Spec2Pipeline.fringe - INFO - FringeStep instance created. 2022-10-06 04:34:42,856 - stpipe.Spec2Pipeline.pathloss - INFO - PathLossStep instance created. 2022-10-06 04:34:42,857 - stpipe.Spec2Pipeline.barshadow - INFO - BarShadowStep instance created. 2022-10-06 04:34:42,858 - stpipe.Spec2Pipeline.wfss_contam - INFO - WfssContamStep instance created. 2022-10-06 04:34:42,859 - stpipe.Spec2Pipeline.photom - INFO - PhotomStep instance created. 2022-10-06 04:34:42,860 - stpipe.Spec2Pipeline.resample_spec - INFO - ResampleSpecStep instance created. 2022-10-06 04:34:42,861 - stpipe.Spec2Pipeline.cube_build - INFO - CubeBuildStep instance created. 2022-10-06 04:34:42,862 - stpipe.Spec2Pipeline.extract_1d - INFO - Extract1dStep instance created. 2022-10-06 04:34:43,259 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/jw00626030001_02103_00005_nrs1_rate.fits',). 2022-10-06 04:34:43,273 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'save_bsub': False, 'fail_on_exception': True, 'save_wfss_esec': False, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000}, 'master_background_mos': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'source_type': None}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'wfss_contam': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'save_simulated_image': False, 'save_contam_images': False, 'maximum_cores': 'none'}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'drizzle', 'coord_system': 'internal_cal', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': False, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None}}} 2022-10-06 04:34:43,537 - stpipe.Spec2Pipeline - INFO - Prefetching reference files for dataset: 'jw00626030001_02103_00005_nrs1_rate.fits' reftypes = ['apcorr', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'msaoper', 'ote', 'regions', 'sflat', 'speckernel', 'specprofile', 'spectrace', 'specwcs', 'wavelengthrange', 'wavemap'] 2022-10-06 04:34:43,558 - stpipe.Spec2Pipeline - INFO - Prefetch for APCORR reference file is 'N/A'. 2022-10-06 04:34:43,558 - stpipe.Spec2Pipeline - INFO - Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. 2022-10-06 04:34:43,559 - stpipe.Spec2Pipeline - INFO - Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. 2022-10-06 04:34:43,561 - stpipe.Spec2Pipeline - INFO - Prefetch for CUBEPAR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_cubepar_0005.fits'. 2022-10-06 04:34:43,562 - stpipe.Spec2Pipeline - INFO - Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits'. 2022-10-06 04:34:43,563 - stpipe.Spec2Pipeline - INFO - Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf'. 2022-10-06 04:34:43,565 - stpipe.Spec2Pipeline - INFO - Prefetch for DISTORTION reference file is 'N/A'. 2022-10-06 04:34:43,565 - stpipe.Spec2Pipeline - INFO - Override for EXTRACT1D reference file is '/grp/crds/jwst/references/jwst/jwst_nirspec_extract1d_0001.asdf'. 2022-10-06 04:34:43,567 - stpipe.Spec2Pipeline - INFO - Prefetch for FFLAT reference file is 'N/A'. 2022-10-06 04:34:43,567 - stpipe.Spec2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is 'N/A'. 2022-10-06 04:34:43,567 - stpipe.Spec2Pipeline - INFO - Prefetch for FLAT reference file is 'N/A'. 2022-10-06 04:34:43,567 - stpipe.Spec2Pipeline - INFO - Prefetch for FORE reference file is 'N/A'. 2022-10-06 04:34:43,567 - stpipe.Spec2Pipeline - INFO - Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. 2022-10-06 04:34:43,569 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUFORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf'. 2022-10-06 04:34:43,570 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUPOST reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf'. 2022-10-06 04:34:43,572 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUSLICER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'. 2022-10-06 04:34:43,573 - stpipe.Spec2Pipeline - INFO - Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. 2022-10-06 04:34:43,574 - stpipe.Spec2Pipeline - INFO - Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. 2022-10-06 04:34:43,575 - stpipe.Spec2Pipeline - INFO - Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. 2022-10-06 04:34:43,576 - stpipe.Spec2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'. 2022-10-06 04:34:43,576 - stpipe.Spec2Pipeline - INFO - Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0036.fits'. 2022-10-06 04:34:43,578 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECKERNEL reference file is 'N/A'. 2022-10-06 04:34:43,578 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECPROFILE reference file is 'N/A'. 2022-10-06 04:34:43,578 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECTRACE reference file is 'N/A'. 2022-10-06 04:34:43,578 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'. 2022-10-06 04:34:43,578 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. 2022-10-06 04:34:43,579 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVEMAP reference file is 'N/A'. 2022-10-06 04:34:43,580 - stpipe.Spec2Pipeline - INFO - Starting calwebb_spec2 ... 2022-10-06 04:34:43,580 - stpipe.Spec2Pipeline - INFO - Processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/jw00626030001_02103_00005_nrs1 2022-10-06 04:34:43,580 - stpipe.Spec2Pipeline - INFO - Working on input /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/jw00626030001_02103_00005_nrs1_rate.fits ... 2022-10-06 04:34:44,246 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_rate.fits>,). 2022-10-06 04:34:44,248 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} 2022-10-06 04:34:44,488 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_ytilt is 0.139291257 deg 2022-10-06 04:34:44,488 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.3161331710000003 deg 2022-10-06 04:34:44,489 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_y correction: 0.005914304200584613 deg 2022-10-06 04:34:44,490 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_x correction: 0.0 deg 2022-10-06 04:34:44,503 - stpipe.Spec2Pipeline.assign_wcs - INFO - Combination REF_G235M missing in wavelengthrange file, setting order to -1 and range to [1.66e-06, 3.17e-06]. 2022-10-06 04:34:44,593 - stpipe.Spec2Pipeline.assign_wcs - INFO - Applied Barycentric velocity correction : 0.9999953090767777 2022-10-06 04:34:49,086 - stpipe.Spec2Pipeline.assign_wcs - INFO - Created a NIRSPEC nrs_autowave pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': None, 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} 2022-10-06 04:34:51,196 - stpipe.Spec2Pipeline.assign_wcs - INFO - COMPLETED assign_wcs 2022-10-06 04:34:54,637 - stpipe.Spec2Pipeline.assign_wcs - INFO - Saved model in jw00626030001_02103_00005_nrs1_assign_wcs.fits 2022-10-06 04:34:54,638 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs done 2022-10-06 04:34:55,172 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_assign_wcs.fits>, []). 2022-10-06 04:34:55,173 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None} 2022-10-06 04:34:55,174 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step skipped. 2022-10-06 04:34:55,177 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract done 2022-10-06 04:34:55,558 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_assign_wcs.fits>, []). 2022-10-06 04:34:55,559 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'} 2022-10-06 04:34:55,559 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step skipped. 2022-10-06 04:34:55,562 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract done 2022-10-06 04:34:55,963 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_assign_wcs.fits>,). 2022-10-06 04:34:55,964 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'} 2022-10-06 04:34:55,989 - stpipe.Spec2Pipeline.msa_flagging - INFO - Using reference file /grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json 2022-10-06 04:34:55,990 - stpipe.JwstStep - INFO - JwstStep instance created. 2022-10-06 04:34:56,234 - stpipe.Spec2Pipeline.msa_flagging - INFO - gwa_ytilt is 0.139291257 deg 2022-10-06 04:34:56,234 - stpipe.Spec2Pipeline.msa_flagging - INFO - gwa_xtilt is 0.3161331710000003 deg 2022-10-06 04:34:56,235 - stpipe.Spec2Pipeline.msa_flagging - INFO - theta_y correction: 0.005914304200584613 deg 2022-10-06 04:34:56,236 - stpipe.Spec2Pipeline.msa_flagging - INFO - theta_x correction: 0.0 deg 2022-10-06 04:34:56,249 - stpipe.Spec2Pipeline.msa_flagging - INFO - Combination REF_G235M missing in wavelengthrange file, setting order to -1 and range to [1.66e-06, 3.17e-06]. 2022-10-06 04:34:56,250 - stpipe.Spec2Pipeline.msa_flagging - INFO - SPORDER= -1, wrange=[1.66e-06, 3.17e-06] 2022-10-06 04:34:56,368 - stpipe.Spec2Pipeline.msa_flagging - INFO - Applied Barycentric velocity correction : 0.9999953090767777 2022-10-06 04:34:56,407 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 5 open slits in quadrant 1 2022-10-06 04:34:56,464 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 3 open slits in quadrant 2 2022-10-06 04:34:56,492 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 9 open slits in quadrant 3 2022-10-06 04:34:56,574 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 3 open slits in quadrant 4 2022-10-06 04:34:56,603 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 0 open slits in quadrant 5 2022-10-06 04:35:14,845 - stpipe.Spec2Pipeline.msa_flagging - INFO - Saved model in jw00626030001_02103_00005_nrs1_msa_flagging.fits 2022-10-06 04:35:14,846 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging done 2022-10-06 04:35:15,369 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_msa_flagging.fits>,). 2022-10-06 04:35:15,370 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000} 2022-10-06 04:35:15,371 - stpipe.Spec2Pipeline.extract_2d - INFO - Step skipped. 2022-10-06 04:35:15,374 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d done 2022-10-06 04:35:15,790 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_msa_flagging.fits>,). 2022-10-06 04:35:15,792 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'source_type': None} 2022-10-06 04:35:15,792 - stpipe.Spec2Pipeline.srctype - INFO - Step skipped. 2022-10-06 04:35:15,795 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype done 2022-10-06 04:35:16,211 - stpipe.Spec2Pipeline.master_background_mos - INFO - Step master_background_mos running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_msa_flagging.fits>,). 2022-10-06 04:35:16,214 - stpipe.Spec2Pipeline.master_background_mos - INFO - Step master_background_mos parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}}} 2022-10-06 04:35:16,214 - stpipe.Spec2Pipeline.master_background_mos - INFO - Step skipped. 2022-10-06 04:35:16,216 - stpipe.Spec2Pipeline.master_background_mos - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:35:16,216 - stpipe.Spec2Pipeline.master_background_mos - INFO - Step master_background_mos done 2022-10-06 04:35:16,637 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_msa_flagging.fits>,). 2022-10-06 04:35:16,638 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'} 2022-10-06 04:35:16,638 - stpipe.Spec2Pipeline.wavecorr - INFO - Step skipped. 2022-10-06 04:35:16,641 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr done 2022-10-06 04:35:17,030 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_msa_flagging.fits>,). 2022-10-06 04:35:17,031 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2022-10-06 04:41:21,388 - stpipe.Spec2Pipeline.flat_field - INFO - Saved model in jw00626030001_02103_00005_nrs1_flat_field.fits 2022-10-06 04:41:21,388 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field done 2022-10-06 04:41:21,789 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_flat_field.fits>,). 2022-10-06 04:41:21,790 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None} 2022-10-06 04:41:21,791 - stpipe.Spec2Pipeline.pathloss - INFO - Step skipped. 2022-10-06 04:41:21,793 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss done 2022-10-06 04:41:22,203 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_flat_field.fits>,). 2022-10-06 04:41:22,204 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None} 2022-10-06 04:41:22,204 - stpipe.Spec2Pipeline.barshadow - INFO - Step skipped. 2022-10-06 04:41:22,207 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow done 2022-10-06 04:41:22,616 - stpipe.Spec2Pipeline.photom - INFO - Step photom running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_flat_field.fits>,). 2022-10-06 04:41:22,617 - stpipe.Spec2Pipeline.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None} 2022-10-06 04:41:22,617 - stpipe.Spec2Pipeline.photom - INFO - Step skipped. 2022-10-06 04:41:22,620 - stpipe.Spec2Pipeline.photom - INFO - Step photom done 2022-10-06 04:41:23,072 - stpipe.Spec2Pipeline.cube_build - INFO - Step cube_build running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_cal.fits>,). 2022-10-06 04:41:23,074 - stpipe.Spec2Pipeline.cube_build - INFO - Step cube_build parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'multi', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'drizzle', 'coord_system': 'internal_cal', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'skip_dqflagging': True} 2022-10-06 04:41:23,074 - stpipe.Spec2Pipeline.cube_build - INFO - Starting IFU Cube Building Step 2022-10-06 04:41:23,074 - stpipe.Spec2Pipeline.cube_build - INFO - Input interpolation: area 2022-10-06 04:41:23,074 - stpipe.Spec2Pipeline.cube_build - INFO - Coordinate system to use: internal_cal 2022-10-06 04:41:23,109 - stpipe.Spec2Pipeline.cube_build - INFO - Reading cube parameter file /grp/crds/cache/references/jwst/jwst_nirspec_cubepar_0005.fits 2022-10-06 04:41:24,558 - stpipe.Spec2Pipeline.cube_build - INFO - Output IFUcube are constructed from all the data 2022-10-06 04:41:24,558 - stpipe.Spec2Pipeline.cube_build - INFO - Number of IFU cubes produced by this run = 1 2022-10-06 04:41:24,563 - stpipe.Spec2Pipeline.cube_build - INFO - Mapping all pixels to output to determine IFU foot print 2022-10-06 04:41:24,563 - stpipe.Spec2Pipeline.cube_build - INFO - Looping over slices to determine cube size 2022-10-06 04:42:31,194 - stpipe.Spec2Pipeline.cube_build - INFO - Across slice scale 0.10000000149011612 2022-10-06 04:42:31,194 - stpipe.Spec2Pipeline.cube_build - INFO - Changed the across slice scale dimension so we have 1-1 mapping between b and slice # 2022-10-06 04:42:31,194 - stpipe.Spec2Pipeline.cube_build - INFO - New across slice Scale 0.000773333323498567 2022-10-06 04:42:31,195 - stpipe.Spec2Pipeline.cube_build - INFO - Cube Geometry: 2022-10-06 04:42:31,195 - stpipe.Spec2Pipeline.cube_build - INFO - axis# Naxis CRPIX CRVAL CDELT(arcsec) Min & Max (xi, eta arcsec) 2022-10-06 04:42:31,195 - stpipe.Spec2Pipeline.cube_build - INFO - Axis 1 30 0.50 -0.01160000 0.00077333 -0.00734667 0.00734667 2022-10-06 04:42:31,195 - stpipe.Spec2Pipeline.cube_build - INFO - Axis 2 19 0.50 -0.00734667 0.00077333 -0.01160000 0.01160000 2022-10-06 04:42:31,195 - stpipe.Spec2Pipeline.cube_build - INFO - axis# Naxis CRPIX CRVAL CDELT(microns) Min & Max (microns) 2022-10-06 04:42:31,195 - stpipe.Spec2Pipeline.cube_build - INFO - Axis 3 1451 1.00 1.64561237 0.00106000 1.64508237 3.18314243 2022-10-06 04:42:31,195 - stpipe.Spec2Pipeline.cube_build - INFO - Cube covers grating, filter: g235m, opaque 2022-10-06 04:42:31,195 - stpipe.Spec2Pipeline.cube_build - INFO - Output Name: jw00626030001_02103_00005_nrs1_s3d.fits 2022-10-06 04:43:44,073 - stpipe.Spec2Pipeline.cube_build - INFO - Average # of holes/wavelength plane is < 1 2022-10-06 04:43:44,073 - stpipe.Spec2Pipeline.cube_build - INFO - Total # of holes for IFU cube is : 0 2022-10-06 04:43:44,175 - stpipe.Spec2Pipeline.cube_build - INFO - Update S_REGION to POLYGON ICRS -0.000006337 0.000000107 -0.000006337 0.000003974 -0.000000107 0.000003974 -0.000000107 0.000000107 2022-10-06 04:43:44,181 - stpipe.Spec2Pipeline.cube_build - INFO - Step cube_build done 2022-10-06 04:43:44,301 - stpipe.Spec2Pipeline - INFO - Saved model in jw00626030001_02103_00005_nrs1_s3d.fits 2022-10-06 04:43:44,823 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d running with args (<ModelContainer>,). 2022-10-06 04:43:44,824 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': False, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None} 2022-10-06 04:43:44,834 - stpipe.Spec2Pipeline.extract_1d - INFO - Using EXTRACT1D reference file /grp/crds/jwst/references/jwst/jwst_nirspec_extract1d_0001.asdf 2022-10-06 04:43:44,834 - stpipe.Spec2Pipeline.extract_1d - INFO - APCORR reference file name is "N/A" 2022-10-06 04:43:44,834 - stpipe.Spec2Pipeline.extract_1d - INFO - APCORR will NOT be applied 2022-10-06 04:43:45,163 - stpipe.Spec2Pipeline.extract_1d - WARNING - Source type was 'UNKNOWN'; setting to 'EXTENDED'. 2022-10-06 04:43:45,179 - stpipe.Spec2Pipeline.extract_1d - INFO - Input model does not break out variance information. Passing only generalized errors. 2022-10-06 04:44:09,529 - stpipe.Spec2Pipeline.extract_1d - INFO - Saved model in jw00626030001_02103_00005_nrs1_x1d.fits 2022-10-06 04:44:09,529 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d done 2022-10-06 04:44:09,530 - stpipe.Spec2Pipeline - INFO - Finished processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/jw00626030001_02103_00005_nrs1 2022-10-06 04:44:09,530 - stpipe.Spec2Pipeline - INFO - Ending calwebb_spec2 2022-10-06 04:44:09,530 - stpipe.Spec2Pipeline - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:44:12,689 - stpipe.Spec2Pipeline - INFO - Saved model in jw00626030001_02103_00005_nrs1_cal.fits 2022-10-06 04:44:12,690 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline done -------------------------------Captured log setup------------------------------- INFO stpipe:pipeline.py:208 PARS-SPEC2PIPELINE parameters found: /grp/crds/cache/references/jwst/jwst_nirspec_pars-spec2pipeline_0020.asdf INFO stpipe.Spec2Pipeline:step.py:366 Spec2Pipeline instance created. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:366 BackgroundStep instance created. INFO stpipe.Spec2Pipeline.assign_wcs:step.py:366 AssignWcsStep instance created. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:366 ImprintStep instance created. INFO stpipe.Spec2Pipeline.msa_flagging:step.py:366 MSAFlagOpenStep instance created. INFO stpipe.Spec2Pipeline.extract_2d:step.py:366 Extract2dStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos:step.py:366 MasterBackgroundMosStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:step.py:366 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:step.py:366 PathLossStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:step.py:366 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.photom:step.py:366 PhotomStep instance created. INFO stpipe.Spec2Pipeline.wavecorr:step.py:366 WavecorrStep instance created. INFO stpipe.Spec2Pipeline.flat_field:step.py:366 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.srctype:step.py:366 SourceTypeStep instance created. INFO stpipe.Spec2Pipeline.straylight:step.py:366 StraylightStep instance created. INFO stpipe.Spec2Pipeline.fringe:step.py:366 FringeStep instance created. INFO stpipe.Spec2Pipeline.pathloss:step.py:366 PathLossStep instance created. INFO stpipe.Spec2Pipeline.barshadow:step.py:366 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.wfss_contam:step.py:366 WfssContamStep instance created. INFO stpipe.Spec2Pipeline.photom:step.py:366 PhotomStep instance created. INFO stpipe.Spec2Pipeline.resample_spec:step.py:366 ResampleSpecStep instance created. INFO stpipe.Spec2Pipeline.cube_build:step.py:366 CubeBuildStep instance created. INFO stpipe.Spec2Pipeline.extract_1d:step.py:366 Extract1dStep instance created. INFO stpipe.Spec2Pipeline:step.py:430 Step Spec2Pipeline running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/jw00626030001_02103_00005_nrs1_rate.fits',). INFO stpipe.Spec2Pipeline:step.py:434 Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'save_bsub': False, 'fail_on_exception': True, 'save_wfss_esec': False, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000}, 'master_background_mos': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'source_type': None}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'wfss_contam': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'save_simulated_image': False, 'save_contam_images': False, 'maximum_cores': 'none'}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'drizzle', 'coord_system': 'internal_cal', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': False, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None}}} INFO stpipe.Spec2Pipeline:pipeline.py:358 Prefetching reference files for dataset: 'jw00626030001_02103_00005_nrs1_rate.fits' reftypes = ['apcorr', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'msaoper', 'ote', 'regions', 'sflat', 'speckernel', 'specprofile', 'spectrace', 'specwcs', 'wavelengthrange', 'wavemap'] INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for APCORR reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for CUBEPAR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_cubepar_0005.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DISTORTION reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Override for EXTRACT1D reference file is '/grp/crds/jwst/references/jwst/jwst_nirspec_extract1d_0001.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FFLAT reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FILTEROFFSET reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FLAT reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FORE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for IFUFORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for IFUPOST reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for IFUSLICER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for REGIONS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0036.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECKERNEL reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECPROFILE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECTRACE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECWCS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WAVEMAP reference file is 'N/A'. INFO stpipe.Spec2Pipeline:calwebb_spec2.py:92 Starting calwebb_spec2 ... INFO stpipe.Spec2Pipeline:calwebb_spec2.py:110 Processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/jw00626030001_02103_00005_nrs1 INFO stpipe.Spec2Pipeline:calwebb_spec2.py:176 Working on input /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/jw00626030001_02103_00005_nrs1_rate.fits ... DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:391 Science data does not allow master background correction. Skipping "master_background_mos". INFO stpipe.Spec2Pipeline.assign_wcs:step.py:430 Step assign_wcs running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.assign_wcs:step.py:434 Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:80 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': 'N/A', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:80 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': 'N/A', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1375 gwa_ytilt is 0.139291257 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1375 gwa_ytilt is 0.139291257 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1376 gwa_xtilt is 0.3161331710000003 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1376 gwa_xtilt is 0.3161331710000003 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1380 theta_y correction: 0.005914304200584613 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1380 theta_y correction: 0.005914304200584613 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:777 Combination REF_G235M missing in wavelengthrange file, setting order to -1 and range to [1.66e-06, 3.17e-06]. INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:777 Combination REF_G235M missing in wavelengthrange file, setting order to -1 and range to [1.66e-06, 3.17e-06]. INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:914 Applied Barycentric velocity correction : 0.9999953090767777 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:914 Applied Barycentric velocity correction : 0.9999953090767777 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:62 Created a NIRSPEC nrs_autowave pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': None, 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:62 Created a NIRSPEC nrs_autowave pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': None, 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} INFO stpipe.Spec2Pipeline.assign_wcs:assign_wcs.py:96 COMPLETED assign_wcs INFO stpipe.Spec2Pipeline.assign_wcs:assign_wcs.py:96 COMPLETED assign_wcs INFO stpipe.Spec2Pipeline.assign_wcs:step.py:1016 Saved model in jw00626030001_02103_00005_nrs1_assign_wcs.fits INFO stpipe.Spec2Pipeline.assign_wcs:step.py:546 Step assign_wcs done INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:430 Step bkg_subtract running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_assign_wcs.fits>, []). INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:434 Step bkg_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None} INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:546 Step bkg_subtract done INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:430 Step imprint_subtract running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_assign_wcs.fits>, []). INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:434 Step imprint_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'} INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:546 Step imprint_subtract done INFO stpipe.Spec2Pipeline.msa_flagging:step.py:430 Step msa_flagging running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_assign_wcs.fits>,). INFO stpipe.Spec2Pipeline.msa_flagging:step.py:434 Step msa_flagging parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'} INFO stpipe.Spec2Pipeline.msa_flagging:msaflagopen_step.py:27 Using reference file /grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json INFO stpipe.JwstStep:step.py:366 JwstStep instance created. INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1375 gwa_ytilt is 0.139291257 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1375 gwa_ytilt is 0.139291257 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1376 gwa_xtilt is 0.3161331710000003 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1376 gwa_xtilt is 0.3161331710000003 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1380 theta_y correction: 0.005914304200584613 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1380 theta_y correction: 0.005914304200584613 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:777 Combination REF_G235M missing in wavelengthrange file, setting order to -1 and range to [1.66e-06, 3.17e-06]. INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:777 Combination REF_G235M missing in wavelengthrange file, setting order to -1 and range to [1.66e-06, 3.17e-06]. INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:330 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:330 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1006 Applied Barycentric velocity correction : 0.9999953090767777 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1006 Applied Barycentric velocity correction : 0.9999953090767777 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1020 There are 5 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1020 There are 5 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1020 There are 3 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1020 There are 3 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1020 There are 9 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1020 There are 9 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1020 There are 3 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1020 There are 3 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1020 There are 0 open slits in quadrant 5 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1020 There are 0 open slits in quadrant 5 INFO stpipe.Spec2Pipeline.msa_flagging:step.py:1016 Saved model in jw00626030001_02103_00005_nrs1_msa_flagging.fits INFO stpipe.Spec2Pipeline.msa_flagging:step.py:546 Step msa_flagging done INFO stpipe.Spec2Pipeline.extract_2d:step.py:430 Step extract_2d running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_msa_flagging.fits>,). INFO stpipe.Spec2Pipeline.extract_2d:step.py:434 Step extract_2d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000} INFO stpipe.Spec2Pipeline.extract_2d:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.extract_2d:step.py:546 Step extract_2d done INFO stpipe.Spec2Pipeline.srctype:step.py:430 Step srctype running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_msa_flagging.fits>,). INFO stpipe.Spec2Pipeline.srctype:step.py:434 Step srctype parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'source_type': None} INFO stpipe.Spec2Pipeline.srctype:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.srctype:step.py:546 Step srctype done INFO stpipe.Spec2Pipeline.master_background_mos:step.py:430 Step master_background_mos running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_msa_flagging.fits>,). INFO stpipe.Spec2Pipeline.master_background_mos:step.py:434 Step master_background_mos parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}}} INFO stpipe.Spec2Pipeline.master_background_mos:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.master_background_mos:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Spec2Pipeline.master_background_mos:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Spec2Pipeline.master_background_mos:step.py:546 Step master_background_mos done INFO stpipe.Spec2Pipeline.wavecorr:step.py:430 Step wavecorr running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_msa_flagging.fits>,). INFO stpipe.Spec2Pipeline.wavecorr:step.py:434 Step wavecorr parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'} INFO stpipe.Spec2Pipeline.wavecorr:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.wavecorr:step.py:546 Step wavecorr done INFO stpipe.Spec2Pipeline.flat_field:step.py:430 Step flat_field running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_msa_flagging.fits>,). INFO stpipe.Spec2Pipeline.flat_field:step.py:434 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:74 Input is IFUImageModel of exposure type NRS_AUTOWAVE DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:201 No reference found for type FLAT DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:201 No reference found for type FFLAT DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:199 Using SFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_sflat_0036.fits DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:199 Using DFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 6 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 6 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 7 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 7 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 7 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 7 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 5 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 5 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 12 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 12 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 3 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 3 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 14 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 14 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 9 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 9 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 14 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 14 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 5 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 5 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 16 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 16 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 5 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 5 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 8 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 8 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 1 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 1 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 8 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 8 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 3 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 3 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 13 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 13 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 4 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 4 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 14 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 14 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 6 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 6 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 6 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 6 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 6 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 6 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 12 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 12 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 3 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 3 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 9 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 9 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 9 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 9 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 5 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 5 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 8 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 8 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1666 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 7 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1725 7 flat-field values <= 0 INFO stpipe.Spec2Pipeline.flat_field:step.py:1016 Saved model in jw00626030001_02103_00005_nrs1_flat_field.fits INFO stpipe.Spec2Pipeline.flat_field:step.py:546 Step flat_field done INFO stpipe.Spec2Pipeline.pathloss:step.py:430 Step pathloss running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_flat_field.fits>,). INFO stpipe.Spec2Pipeline.pathloss:step.py:434 Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None} INFO stpipe.Spec2Pipeline.pathloss:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.pathloss:step.py:546 Step pathloss done INFO stpipe.Spec2Pipeline.barshadow:step.py:430 Step barshadow running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_flat_field.fits>,). INFO stpipe.Spec2Pipeline.barshadow:step.py:434 Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None} INFO stpipe.Spec2Pipeline.barshadow:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.barshadow:step.py:546 Step barshadow done INFO stpipe.Spec2Pipeline.photom:step.py:430 Step photom running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_flat_field.fits>,). INFO stpipe.Spec2Pipeline.photom:step.py:434 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None} INFO stpipe.Spec2Pipeline.photom:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.photom:step.py:546 Step photom done INFO stpipe.Spec2Pipeline.cube_build:step.py:430 Step cube_build running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_cal.fits>,). INFO stpipe.Spec2Pipeline.cube_build:step.py:434 Step cube_build parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'multi', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'drizzle', 'coord_system': 'internal_cal', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'skip_dqflagging': True} INFO stpipe.Spec2Pipeline.cube_build:cube_build_step.py:72 Starting IFU Cube Building Step INFO stpipe.Spec2Pipeline.cube_build:cube_build_step.py:137 Input interpolation: area INFO stpipe.Spec2Pipeline.cube_build:cube_build_step.py:138 Coordinate system to use: internal_cal INFO stpipe.Spec2Pipeline.cube_build:cube_build.py:105 Reading cube parameter file /grp/crds/cache/references/jwst/jwst_nirspec_cubepar_0005.fits INFO stpipe.Spec2Pipeline.cube_build:cube_build.py:105 Reading cube parameter file /grp/crds/cache/references/jwst/jwst_nirspec_cubepar_0005.fits INFO stpipe.Spec2Pipeline.cube_build:cube_build.py:365 Output IFUcube are constructed from all the data INFO stpipe.Spec2Pipeline.cube_build:cube_build.py:365 Output IFUcube are constructed from all the data INFO stpipe.Spec2Pipeline.cube_build:cube_build_step.py:274 Number of IFU cubes produced by this run = 1 DEBUG stpipe.Spec2Pipeline.cube_build:ifu_cube.py:1242 Number of bands in cube: 1 DEBUG stpipe.Spec2Pipeline.cube_build:ifu_cube.py:1242 Number of bands in cube: 1 DEBUG stpipe.Spec2Pipeline.cube_build:ifu_cube.py:1247 Working on data from g235m, opaque DEBUG stpipe.Spec2Pipeline.cube_build:ifu_cube.py:1247 Working on data from g235m, opaque DEBUG stpipe.Spec2Pipeline.cube_build:ifu_cube.py:1249 number of files 1 DEBUG stpipe.Spec2Pipeline.cube_build:ifu_cube.py:1249 number of files 1 INFO stpipe.Spec2Pipeline.cube_build:ifu_cube.py:1292 Mapping all pixels to output to determine IFU foot print INFO stpipe.Spec2Pipeline.cube_build:ifu_cube.py:1292 Mapping all pixels to output to determine IFU foot print INFO stpipe.Spec2Pipeline.cube_build:cube_build_wcs_util.py:156 Looping over slices to determine cube size INFO stpipe.Spec2Pipeline.cube_build:cube_build_wcs_util.py:156 Looping over slices to determine cube size DEBUG stpipe.Spec2Pipeline.cube_build:ifu_cube.py:1332 final a and b:(-0.0065999894030369065, -0.011599999852478504, 0.006599996583404063, 0.011599999852478504) DEBUG stpipe.Spec2Pipeline.cube_build:ifu_cube.py:1332 final a and b:(-0.0065999894030369065, -0.011599999852478504, 0.006599996583404063, 0.011599999852478504) DEBUG stpipe.Spec2Pipeline.cube_build:ifu_cube.py:1333 final wave: (1.6453066210379281, 3.182918178644427) DEBUG stpipe.Spec2Pipeline.cube_build:ifu_cube.py:1333 final wave: (1.6453066210379281, 3.182918178644427) INFO stpipe.Spec2Pipeline.cube_build:ifu_cube.py:1359 Across slice scale 0.10000000149011612 INFO stpipe.Spec2Pipeline.cube_build:ifu_cube.py:1359 Across slice scale 0.10000000149011612 INFO stpipe.Spec2Pipeline.cube_build:ifu_cube.py:1362 Changed the across slice scale dimension so we have 1-1 mapping between b and slice # INFO stpipe.Spec2Pipeline.cube_build:ifu_cube.py:1362 Changed the across slice scale dimension so we have 1-1 mapping between b and slice # INFO stpipe.Spec2Pipeline.cube_build:ifu_cube.py:1363 New across slice Scale 0.000773333323498567 INFO stpipe.Spec2Pipeline.cube_build:ifu_cube.py:1363 New across slice Scale 0.000773333323498567 INFO stpipe.Spec2Pipeline.cube_build:ifu_cube.py:472 Cube Geometry: INFO stpipe.Spec2Pipeline.cube_build:ifu_cube.py:472 Cube Geometry: INFO stpipe.Spec2Pipeline.cube_build:ifu_cube.py:476 axis# Naxis CRPIX CRVAL CDELT(arcsec) Min & Max (xi, eta arcsec) INFO stpipe.Spec2Pipeline.cube_build:ifu_cube.py:476 axis# Naxis CRPIX CRVAL CDELT(arcsec) Min & Max (xi, eta arcsec) INFO stpipe.Spec2Pipeline.cube_build:ifu_cube.py:477 Axis 1 30 0.50 -0.01160000 0.00077333 -0.00734667 0.00734667 INFO stpipe.Spec2Pipeline.cube_build:ifu_cube.py:477 Axis 1 30 0.50 -0.01160000 0.00077333 -0.00734667 0.00734667 INFO stpipe.Spec2Pipeline.cube_build:ifu_cube.py:480 Axis 2 19 0.50 -0.00734667 0.00077333 -0.01160000 0.01160000 INFO stpipe.Spec2Pipeline.cube_build:ifu_cube.py:480 Axis 2 19 0.50 -0.00734667 0.00077333 -0.01160000 0.01160000 INFO stpipe.Spec2Pipeline.cube_build:ifu_cube.py:484 axis# Naxis CRPIX CRVAL CDELT(microns) Min & Max (microns) INFO stpipe.Spec2Pipeline.cube_build:ifu_cube.py:484 axis# Naxis CRPIX CRVAL CDELT(microns) Min & Max (microns) INFO stpipe.Spec2Pipeline.cube_build:ifu_cube.py:485 Axis 3 1451 1.00 1.64561237 0.00106000 1.64508237 3.18314243 INFO stpipe.Spec2Pipeline.cube_build:ifu_cube.py:485 Axis 3 1451 1.00 1.64561237 0.00106000 1.64508237 3.18314243 INFO stpipe.Spec2Pipeline.cube_build:ifu_cube.py:512 Cube covers grating, filter: g235m, opaque INFO stpipe.Spec2Pipeline.cube_build:ifu_cube.py:512 Cube covers grating, filter: g235m, opaque INFO stpipe.Spec2Pipeline.cube_build:ifu_cube.py:227 Output Name: jw00626030001_02103_00005_nrs1_s3d.fits INFO stpipe.Spec2Pipeline.cube_build:ifu_cube.py:227 Output Name: jw00626030001_02103_00005_nrs1_s3d.fits DEBUG stpipe.Spec2Pipeline.cube_build:ifu_cube.py:573 Working on Band defined by: g235m opaque DEBUG stpipe.Spec2Pipeline.cube_build:ifu_cube.py:573 Working on Band defined by: g235m opaque INFO stpipe.Spec2Pipeline.cube_build:ifu_cube.py:2054 Average # of holes/wavelength plane is < 1 INFO stpipe.Spec2Pipeline.cube_build:ifu_cube.py:2054 Average # of holes/wavelength plane is < 1 INFO stpipe.Spec2Pipeline.cube_build:ifu_cube.py:2057 Total # of holes for IFU cube is : 0 INFO stpipe.Spec2Pipeline.cube_build:ifu_cube.py:2057 Total # of holes for IFU cube is : 0 DEBUG stpipe.Spec2Pipeline.cube_build:cube_build_step.py:340 Time to build all cubes 139.61077404022217 INFO stpipe.Spec2Pipeline.cube_build:util.py:1060 Update S_REGION to POLYGON ICRS -0.000006337 0.000000107 -0.000006337 0.000003974 -0.000000107 0.000003974 -0.000000107 0.000000107 INFO stpipe.Spec2Pipeline.cube_build:util.py:1060 Update S_REGION to POLYGON ICRS -0.000006337 0.000000107 -0.000006337 0.000003974 -0.000000107 0.000003974 -0.000000107 0.000000107 INFO stpipe.Spec2Pipeline.cube_build:step.py:546 Step cube_build done INFO stpipe.Spec2Pipeline:step.py:1016 Saved model in jw00626030001_02103_00005_nrs1_s3d.fits INFO stpipe.Spec2Pipeline.extract_1d:step.py:430 Step extract_1d running with args (<ModelContainer>,). INFO stpipe.Spec2Pipeline.extract_1d:step.py:434 Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': False, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None} DEBUG stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:157 Input is a ModelContainer INFO stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:265 Using EXTRACT1D reference file /grp/crds/jwst/references/jwst/jwst_nirspec_extract1d_0001.asdf INFO stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:270 APCORR reference file name is "N/A" INFO stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:271 APCORR will NOT be applied WARNING stpipe.Spec2Pipeline.extract_1d:ifu.py:77 Source type was 'UNKNOWN'; setting to 'EXTENDED'. WARNING stpipe.Spec2Pipeline.extract_1d:ifu.py:77 Source type was 'UNKNOWN'; setting to 'EXTENDED'. INFO stpipe.Spec2Pipeline.extract_1d:ifu.py:410 Input model does not break out variance information. Passing only generalized errors. INFO stpipe.Spec2Pipeline.extract_1d:ifu.py:410 Input model does not break out variance information. Passing only generalized errors. DEBUG stpipe.Spec2Pipeline.extract_1d:ifu.py:521 IFU 1-D extraction parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:ifu.py:521 IFU 1-D extraction parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:ifu.py:522 x_center = 14.5 DEBUG stpipe.Spec2Pipeline.extract_1d:ifu.py:522 x_center = 14.5 DEBUG stpipe.Spec2Pipeline.extract_1d:ifu.py:523 y_center = 9.0 DEBUG stpipe.Spec2Pipeline.extract_1d:ifu.py:523 y_center = 9.0 DEBUG stpipe.Spec2Pipeline.extract_1d:ifu.py:529 width = 30.0 DEBUG stpipe.Spec2Pipeline.extract_1d:ifu.py:529 width = 30.0 DEBUG stpipe.Spec2Pipeline.extract_1d:ifu.py:530 height = 19.0 DEBUG stpipe.Spec2Pipeline.extract_1d:ifu.py:530 height = 19.0 DEBUG stpipe.Spec2Pipeline.extract_1d:ifu.py:531 theta = 0.0 degrees DEBUG stpipe.Spec2Pipeline.extract_1d:ifu.py:531 theta = 0.0 degrees DEBUG stpipe.Spec2Pipeline.extract_1d:ifu.py:532 subtract_background = False DEBUG stpipe.Spec2Pipeline.extract_1d:ifu.py:532 subtract_background = False DEBUG stpipe.Spec2Pipeline.extract_1d:ifu.py:533 sigma clip value for background = 3.0 DEBUG stpipe.Spec2Pipeline.extract_1d:ifu.py:533 sigma clip value for background = 3.0 DEBUG stpipe.Spec2Pipeline.extract_1d:ifu.py:534 method = exact DEBUG stpipe.Spec2Pipeline.extract_1d:ifu.py:534 method = exact DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2952 Not copying from the INT_TIMES table because this is not a TSO exposure. DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2952 Not copying from the INT_TIMES table because this is not a TSO exposure. INFO stpipe.Spec2Pipeline.extract_1d:step.py:1016 Saved model in jw00626030001_02103_00005_nrs1_x1d.fits INFO stpipe.Spec2Pipeline.extract_1d:step.py:546 Step extract_1d done INFO stpipe.Spec2Pipeline:calwebb_spec2.py:314 Finished processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/jw00626030001_02103_00005_nrs1 INFO stpipe.Spec2Pipeline:calwebb_spec2.py:138 Ending calwebb_spec2 INFO stpipe.Spec2Pipeline:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Spec2Pipeline:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Spec2Pipeline:step.py:1016 Saved model in jw00626030001_02103_00005_nrs1_cal.fits INFO stpipe.Spec2Pipeline:step.py:546 Step Spec2Pipeline done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_lamp_ifu_spec2.py::test_nirspec_lamp_ifu_spec2[msa_flagging] | 0.98 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_lamp_ifu_spec2.py::test_nirspec_lamp_ifu_spec2[flat_field] | 1.39 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_lamp_ifu_spec2.py::test_nirspec_lamp_ifu_spec2[cal] | 1.75 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_lamp_ifu_spec2.py::test_nirspec_lamp_ifu_spec2[s3d] | 0.41 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_lamp_ifu_spec2.py::test_nirspec_lamp_ifu_spec2[x1d] | 0.18 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_masterbkg_rerun | 99.86 | |
|
------------------------------Captured stderr call------------------------------ 2022-10-06 04:44:22,646 - stpipe.MasterBackgroundMosStep - INFO - MasterBackgroundMosStep instance created. 2022-10-06 04:44:22,648 - stpipe.MasterBackgroundMosStep.flat_field - INFO - FlatFieldStep instance created. 2022-10-06 04:44:22,648 - stpipe.MasterBackgroundMosStep.pathloss - INFO - PathLossStep instance created. 2022-10-06 04:44:22,649 - stpipe.MasterBackgroundMosStep.barshadow - INFO - BarShadowStep instance created. 2022-10-06 04:44:22,650 - stpipe.MasterBackgroundMosStep.photom - INFO - PhotomStep instance created. 2022-10-06 04:44:23,116 - stpipe.MasterBackgroundMosStep - INFO - Step MasterBackgroundMosStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2022-10-06 04:44:23,119 - stpipe.MasterBackgroundMosStep - INFO - Step MasterBackgroundMosStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}}} 2022-10-06 04:44:23,128 - stpipe.MasterBackgroundMosStep - INFO - Calculating master background 2022-10-06 04:44:23,577 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Step flat_field running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2022-10-06 04:44:23,578 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2022-10-06 04:44:40,614 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 6 2022-10-06 04:44:41,634 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 3 2022-10-06 04:44:44,466 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 4 2022-10-06 04:44:47,092 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 5 2022-10-06 04:44:51,406 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 8 2022-10-06 04:44:53,811 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 10 2022-10-06 04:44:56,714 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 14 2022-10-06 04:45:00,313 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 16 2022-10-06 04:45:04,806 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Step flat_field done 2022-10-06 04:45:05,164 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Step pathloss running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2022-10-06 04:45:05,165 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'EXTENDED'} 2022-10-06 04:45:05,199 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits 2022-10-06 04:45:05,286 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Input exposure type is NRS_MSASPEC 2022-10-06 04:45:07,176 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 0 2022-10-06 04:45:07,197 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 1 2022-10-06 04:45:07,218 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 2 2022-10-06 04:45:07,238 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 3 2022-10-06 04:45:07,261 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 4 2022-10-06 04:45:07,282 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 5 2022-10-06 04:45:07,303 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 6 2022-10-06 04:45:07,324 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 7 2022-10-06 04:45:07,348 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Step pathloss done 2022-10-06 04:45:07,708 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Step barshadow running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2022-10-06 04:45:07,709 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'EXTENDED'} 2022-10-06 04:45:07,742 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits 2022-10-06 04:45:09,316 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 6 2022-10-06 04:45:09,364 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 3 2022-10-06 04:45:09,458 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 4 2022-10-06 04:45:09,543 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 5 2022-10-06 04:45:09,682 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 8 2022-10-06 04:45:09,760 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 10 2022-10-06 04:45:09,848 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 14 2022-10-06 04:45:09,961 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 16 2022-10-06 04:45:10,075 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Step barshadow done 2022-10-06 04:45:10,506 - stpipe.MasterBackgroundMosStep.photom - INFO - Step photom running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2022-10-06 04:45:10,508 - stpipe.MasterBackgroundMosStep.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'EXTENDED'} 2022-10-06 04:45:10,576 - stpipe.MasterBackgroundMosStep.photom - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits 2022-10-06 04:45:10,576 - stpipe.MasterBackgroundMosStep.photom - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits 2022-10-06 04:45:12,118 - stpipe.MasterBackgroundMosStep.photom - INFO - Using instrument: NIRSPEC 2022-10-06 04:45:12,119 - stpipe.MasterBackgroundMosStep.photom - INFO - detector: NRS1 2022-10-06 04:45:12,119 - stpipe.MasterBackgroundMosStep.photom - INFO - exp_type: NRS_MSASPEC 2022-10-06 04:45:12,119 - stpipe.MasterBackgroundMosStep.photom - INFO - filter: F170LP 2022-10-06 04:45:12,119 - stpipe.MasterBackgroundMosStep.photom - INFO - grating: G235M 2022-10-06 04:45:12,253 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 6 2022-10-06 04:45:12,254 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:45:12,263 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 3 2022-10-06 04:45:12,263 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:45:12,272 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 4 2022-10-06 04:45:12,273 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:45:12,282 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 5 2022-10-06 04:45:12,282 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:45:12,292 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 8 2022-10-06 04:45:12,292 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:45:12,302 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 10 2022-10-06 04:45:12,302 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:45:12,311 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 14 2022-10-06 04:45:12,312 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:45:12,321 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 16 2022-10-06 04:45:12,322 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:45:12,336 - stpipe.MasterBackgroundMosStep.photom - INFO - Step photom done 2022-10-06 04:45:12,337 - stpipe.MasterBackgroundMosStep - INFO - Creating MOS master background from background slitlets 2022-10-06 04:45:12,354 - stpipe.MasterBackgroundMosStep - INFO - Using background slitlet background_6 2022-10-06 04:45:12,354 - stpipe.MasterBackgroundMosStep - INFO - Using background slitlet background_5 2022-10-06 04:45:12,355 - stpipe.MasterBackgroundMosStep - INFO - Using background slitlet background_10 2022-10-06 04:45:12,355 - stpipe.MasterBackgroundMosStep - INFO - Using background slitlet background_16 2022-10-06 04:45:13,014 - stpipe.MasterBackgroundMosStep - INFO - Applying resampling and 1D extraction to background slits 2022-10-06 04:45:13,032 - stpipe.ResampleSpecStep - INFO - ResampleSpecStep instance created. 2022-10-06 04:45:13,385 - stpipe.ResampleSpecStep - INFO - Step ResampleSpecStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2022-10-06 04:45:13,386 - stpipe.ResampleSpecStep - INFO - Step ResampleSpecStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True} 2022-10-06 04:45:13,419 - stpipe.ResampleSpecStep - INFO - No DRIZPARS reffile 2022-10-06 04:45:13,420 - stpipe.ResampleSpecStep - INFO - using: pixfrac=1.0 2022-10-06 04:45:13,420 - stpipe.ResampleSpecStep - INFO - using: kernel='square' 2022-10-06 04:45:13,420 - stpipe.ResampleSpecStep - INFO - using: fillval='INDEF' 2022-10-06 04:45:13,421 - stpipe.ResampleSpecStep - INFO - using: wht_type='ivm' 2022-10-06 04:45:13,421 - stpipe.ResampleSpecStep - INFO - using: pscale_ratio=1.0 2022-10-06 04:45:13,421 - stpipe.ResampleSpecStep - INFO - Reorganizing data from exposure nrs_mos_with_bkgslits_srctype.fits 2022-10-06 04:45:14,264 - stpipe.ResampleSpecStep - INFO - Driz parameter kernal: square 2022-10-06 04:45:14,264 - stpipe.ResampleSpecStep - INFO - Driz parameter pixfrac: 1.0 2022-10-06 04:45:14,264 - stpipe.ResampleSpecStep - INFO - Driz parameter fillval: INDEF 2022-10-06 04:45:14,264 - stpipe.ResampleSpecStep - INFO - Driz parameter weight_type: ivm 2022-10-06 04:45:14,423 - stpipe.ResampleSpecStep - INFO - Resampling science data 2022-10-06 04:45:14,458 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 275) --> (16, 275) 2022-10-06 04:45:14,458 - stpipe.ResampleSpecStep - INFO - Resampling var_rnoise 2022-10-06 04:45:14,494 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 275) --> (16, 275) 2022-10-06 04:45:14,496 - stpipe.ResampleSpecStep - INFO - Resampling var_poisson 2022-10-06 04:45:14,531 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 275) --> (16, 275) 2022-10-06 04:45:14,533 - stpipe.ResampleSpecStep - INFO - Resampling var_flat 2022-10-06 04:45:14,569 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 275) --> (16, 275) 2022-10-06 04:45:14,596 - stpipe.ResampleSpecStep - INFO - Update S_REGION to POLYGON ICRS 53.158247003 -27.801208023 53.171031170 -27.801208023 53.171031170 -27.791101145 53.158247003 -27.791101145 2022-10-06 04:45:14,916 - stpipe.ResampleSpecStep - INFO - Driz parameter kernal: square 2022-10-06 04:45:14,916 - stpipe.ResampleSpecStep - INFO - Driz parameter pixfrac: 1.0 2022-10-06 04:45:14,916 - stpipe.ResampleSpecStep - INFO - Driz parameter fillval: INDEF 2022-10-06 04:45:14,916 - stpipe.ResampleSpecStep - INFO - Driz parameter weight_type: ivm 2022-10-06 04:45:15,103 - stpipe.ResampleSpecStep - INFO - Resampling science data 2022-10-06 04:45:15,167 - stpipe.ResampleSpecStep - INFO - Drizzling (28, 1279) --> (17, 1279) 2022-10-06 04:45:15,173 - stpipe.ResampleSpecStep - INFO - Resampling var_rnoise 2022-10-06 04:45:15,241 - stpipe.ResampleSpecStep - INFO - Drizzling (28, 1279) --> (17, 1279) 2022-10-06 04:45:15,247 - stpipe.ResampleSpecStep - INFO - Resampling var_poisson 2022-10-06 04:45:15,313 - stpipe.ResampleSpecStep - INFO - Drizzling (28, 1279) --> (17, 1279) 2022-10-06 04:45:15,319 - stpipe.ResampleSpecStep - INFO - Resampling var_flat 2022-10-06 04:45:15,380 - stpipe.ResampleSpecStep - INFO - Drizzling (28, 1279) --> (17, 1279) 2022-10-06 04:45:15,424 - stpipe.ResampleSpecStep - INFO - Update S_REGION to POLYGON ICRS 53.098754983 -27.869721829 53.157715728 -27.869721829 53.157715728 -27.822405918 53.098754983 -27.822405918 2022-10-06 04:45:15,698 - stpipe.ResampleSpecStep - INFO - Driz parameter kernal: square 2022-10-06 04:45:15,699 - stpipe.ResampleSpecStep - INFO - Driz parameter pixfrac: 1.0 2022-10-06 04:45:15,699 - stpipe.ResampleSpecStep - INFO - Driz parameter fillval: INDEF 2022-10-06 04:45:15,699 - stpipe.ResampleSpecStep - INFO - Driz parameter weight_type: ivm 2022-10-06 04:45:15,868 - stpipe.ResampleSpecStep - INFO - Resampling science data 2022-10-06 04:45:15,911 - stpipe.ResampleSpecStep - INFO - Drizzling (23, 782) --> (17, 782) 2022-10-06 04:45:15,913 - stpipe.ResampleSpecStep - INFO - Resampling var_rnoise 2022-10-06 04:45:15,960 - stpipe.ResampleSpecStep - INFO - Drizzling (23, 782) --> (17, 782) 2022-10-06 04:45:15,964 - stpipe.ResampleSpecStep - INFO - Resampling var_poisson 2022-10-06 04:45:16,015 - stpipe.ResampleSpecStep - INFO - Drizzling (23, 782) --> (17, 782) 2022-10-06 04:45:16,019 - stpipe.ResampleSpecStep - INFO - Resampling var_flat 2022-10-06 04:45:16,061 - stpipe.ResampleSpecStep - INFO - Drizzling (23, 782) --> (17, 782) 2022-10-06 04:45:16,092 - stpipe.ResampleSpecStep - INFO - Update S_REGION to POLYGON ICRS 53.125377232 -27.832055121 53.161276327 -27.832055121 53.161276327 -27.803487942 53.125377232 -27.803487942 2022-10-06 04:45:16,371 - stpipe.ResampleSpecStep - INFO - Driz parameter kernal: square 2022-10-06 04:45:16,371 - stpipe.ResampleSpecStep - INFO - Driz parameter pixfrac: 1.0 2022-10-06 04:45:16,371 - stpipe.ResampleSpecStep - INFO - Driz parameter fillval: INDEF 2022-10-06 04:45:16,371 - stpipe.ResampleSpecStep - INFO - Driz parameter weight_type: ivm 2022-10-06 04:45:16,958 - stpipe.ResampleSpecStep - INFO - Resampling science data 2022-10-06 04:45:17,010 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 1012) --> (17, 1012) 2022-10-06 04:45:17,013 - stpipe.ResampleSpecStep - INFO - Resampling var_rnoise 2022-10-06 04:45:17,065 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 1012) --> (17, 1012) 2022-10-06 04:45:17,070 - stpipe.ResampleSpecStep - INFO - Resampling var_poisson 2022-10-06 04:45:17,121 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 1012) --> (17, 1012) 2022-10-06 04:45:17,126 - stpipe.ResampleSpecStep - INFO - Resampling var_flat 2022-10-06 04:45:17,174 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 1012) --> (17, 1012) 2022-10-06 04:45:17,209 - stpipe.ResampleSpecStep - INFO - Update S_REGION to POLYGON ICRS 53.122179170 -27.859536597 53.168807410 -27.859536597 53.168807410 -27.822232031 53.122179170 -27.822232031 2022-10-06 04:45:17,259 - stpipe.ResampleSpecStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:45:17,259 - stpipe.ResampleSpecStep - INFO - Step ResampleSpecStep done 2022-10-06 04:45:17,278 - stpipe.Extract1dStep - INFO - Extract1dStep instance created. 2022-10-06 04:45:17,665 - stpipe.Extract1dStep - INFO - Step Extract1dStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2022-10-06 04:45:17,666 - stpipe.Extract1dStep - INFO - Step Extract1dStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None} 2022-10-06 04:45:17,693 - stpipe.Extract1dStep - INFO - Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json 2022-10-06 04:45:17,711 - stpipe.Extract1dStep - INFO - Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits 2022-10-06 04:45:17,784 - stpipe.Extract1dStep - INFO - Turning on source position correction for exp_type = NRS_MSASPEC 2022-10-06 04:45:17,784 - stpipe.Extract1dStep - INFO - Working on slit 6 2022-10-06 04:45:17,784 - stpipe.Extract1dStep - INFO - Setting use_source_posn to False for source type EXTENDED 2022-10-06 04:45:17,794 - stpipe.Extract1dStep - INFO - Using extraction limits: xstart=0, xstop=274, ystart=4.0, ystop=11.0 2022-10-06 04:45:17,891 - stpipe.Extract1dStep - INFO - Working on slit 5 2022-10-06 04:45:17,892 - stpipe.Extract1dStep - INFO - Setting use_source_posn to False for source type EXTENDED 2022-10-06 04:45:17,909 - stpipe.Extract1dStep - INFO - Using extraction limits: xstart=0, xstop=1278, ystart=4.5, ystop=11.5 2022-10-06 04:45:18,134 - stpipe.Extract1dStep - INFO - Working on slit 10 2022-10-06 04:45:18,134 - stpipe.Extract1dStep - INFO - Setting use_source_posn to False for source type EXTENDED 2022-10-06 04:45:18,149 - stpipe.Extract1dStep - INFO - Using extraction limits: xstart=0, xstop=781, ystart=4.5, ystop=11.5 2022-10-06 04:45:18,310 - stpipe.Extract1dStep - INFO - Working on slit 16 2022-10-06 04:45:18,311 - stpipe.Extract1dStep - INFO - Setting use_source_posn to False for source type EXTENDED 2022-10-06 04:45:18,326 - stpipe.Extract1dStep - INFO - Using extraction limits: xstart=0, xstop=1011, ystart=4.5, ystop=11.5 2022-10-06 04:45:18,532 - stpipe.Extract1dStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:45:18,532 - stpipe.Extract1dStep - INFO - Step Extract1dStep done 2022-10-06 04:45:18,532 - stpipe.MasterBackgroundMosStep - INFO - Combining 1D background spectra into master background 2022-10-06 04:45:18,533 - stpipe.MasterBackgroundMosStep - INFO - Using exposure time as the weight. 2022-10-06 04:45:18,605 - stpipe.MasterBackgroundMosStep - INFO - Accumulating data from input spectrum 1 2022-10-06 04:45:18,607 - stpipe.MasterBackgroundMosStep - INFO - Accumulating data from input spectrum 2 2022-10-06 04:45:18,613 - stpipe.MasterBackgroundMosStep - INFO - Accumulating data from input spectrum 3 2022-10-06 04:45:18,617 - stpipe.MasterBackgroundMosStep - INFO - Accumulating data from input spectrum 4 2022-10-06 04:45:18,621 - stpipe.MasterBackgroundMosStep - WARNING - 2 output pixel numbers were NaN 2022-10-06 04:45:18,622 - stpipe.MasterBackgroundMosStep - WARNING - 1 elements of output had no corresponding input data; 2022-10-06 04:45:18,622 - stpipe.MasterBackgroundMosStep - WARNING - these elements will be omitted. 2022-10-06 04:45:18,689 - stpipe.MasterBackgroundMosStep - INFO - Interpolating 1D master background to all MOS 2D slitlets 2022-10-06 04:45:20,167 - stpipe.MasterBackgroundMosStep - INFO - Expanding background for slit 6 2022-10-06 04:45:20,167 - stpipe.MasterBackgroundMosStep - INFO - Expanding background for slit 3 2022-10-06 04:45:20,168 - stpipe.MasterBackgroundMosStep - INFO - Expanding background for slit 4 2022-10-06 04:45:20,168 - stpipe.MasterBackgroundMosStep - INFO - Expanding background for slit 5 2022-10-06 04:45:20,169 - stpipe.MasterBackgroundMosStep - INFO - Expanding background for slit 8 2022-10-06 04:45:20,169 - stpipe.MasterBackgroundMosStep - INFO - Expanding background for slit 10 2022-10-06 04:45:20,170 - stpipe.MasterBackgroundMosStep - INFO - Expanding background for slit 14 2022-10-06 04:45:20,170 - stpipe.MasterBackgroundMosStep - INFO - Expanding background for slit 16 2022-10-06 04:45:20,606 - stpipe.MasterBackgroundMosStep.photom - INFO - Step photom running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2022-10-06 04:45:20,608 - stpipe.MasterBackgroundMosStep.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'photom', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': 'EXTENDED'} 2022-10-06 04:45:20,615 - stpipe.MasterBackgroundMosStep.photom - INFO - Using previously specified correction parameters. 2022-10-06 04:45:20,615 - stpipe.MasterBackgroundMosStep.photom - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits 2022-10-06 04:45:20,615 - stpipe.MasterBackgroundMosStep.photom - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits 2022-10-06 04:45:22,100 - stpipe.MasterBackgroundMosStep.photom - INFO - Using instrument: NIRSPEC 2022-10-06 04:45:22,100 - stpipe.MasterBackgroundMosStep.photom - INFO - detector: NRS1 2022-10-06 04:45:22,100 - stpipe.MasterBackgroundMosStep.photom - INFO - exp_type: NRS_MSASPEC 2022-10-06 04:45:22,100 - stpipe.MasterBackgroundMosStep.photom - INFO - filter: F170LP 2022-10-06 04:45:22,101 - stpipe.MasterBackgroundMosStep.photom - INFO - grating: G235M 2022-10-06 04:45:22,190 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 6 2022-10-06 04:45:22,190 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:45:22,199 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 3 2022-10-06 04:45:22,200 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:45:22,209 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 4 2022-10-06 04:45:22,210 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:45:22,219 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 5 2022-10-06 04:45:22,219 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:45:22,229 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 8 2022-10-06 04:45:22,230 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:45:22,239 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 10 2022-10-06 04:45:22,239 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:45:22,249 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 14 2022-10-06 04:45:22,250 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:45:22,259 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 16 2022-10-06 04:45:22,260 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:45:22,272 - stpipe.MasterBackgroundMosStep.photom - INFO - Step photom done 2022-10-06 04:45:22,760 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Step barshadow running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2022-10-06 04:45:22,762 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'barshadow', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': 'EXTENDED'} 2022-10-06 04:45:24,273 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 6 2022-10-06 04:45:24,280 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 3 2022-10-06 04:45:24,287 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 4 2022-10-06 04:45:24,293 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 5 2022-10-06 04:45:24,300 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 8 2022-10-06 04:45:24,306 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 10 2022-10-06 04:45:24,313 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 14 2022-10-06 04:45:24,319 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 16 2022-10-06 04:45:24,328 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Step barshadow done 2022-10-06 04:45:24,798 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Step pathloss running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2022-10-06 04:45:24,798 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'pathloss', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': 'EXTENDED'} 2022-10-06 04:45:24,806 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Input exposure type is NRS_MSASPEC 2022-10-06 04:45:26,270 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 0 2022-10-06 04:45:26,277 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 1 2022-10-06 04:45:26,284 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 2 2022-10-06 04:45:26,292 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 3 2022-10-06 04:45:26,300 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 4 2022-10-06 04:45:26,308 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 5 2022-10-06 04:45:26,315 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 6 2022-10-06 04:45:26,323 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 7 2022-10-06 04:45:26,332 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Step pathloss done 2022-10-06 04:45:26,872 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Step flat_field running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2022-10-06 04:45:26,874 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'flat_field', 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': True} 2022-10-06 04:45:26,881 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Using flat field from correction pars <MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits> 2022-10-06 04:45:28,364 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 6 2022-10-06 04:45:28,370 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 3 2022-10-06 04:45:28,375 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 4 2022-10-06 04:45:28,381 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 5 2022-10-06 04:45:28,386 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 8 2022-10-06 04:45:28,392 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 10 2022-10-06 04:45:28,397 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 14 2022-10-06 04:45:28,403 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 16 2022-10-06 04:45:28,412 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Step flat_field done 2022-10-06 04:45:28,417 - stpipe.MasterBackgroundMosStep - INFO - Subtracting master background from each MOS source slitlet 2022-10-06 04:45:30,578 - stpipe.MasterBackgroundMosStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:45:30,578 - stpipe.MasterBackgroundMosStep - INFO - Step MasterBackgroundMosStep done 2022-10-06 04:45:31,071 - stpipe.MasterBackgroundMosStep - INFO - Step MasterBackgroundMosStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2022-10-06 04:45:31,074 - stpipe.MasterBackgroundMosStep - INFO - Step MasterBackgroundMosStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'masterbackgroundmosstep', 'search_output_file': True, 'input_dir': '', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}}} 2022-10-06 04:45:31,081 - stpipe.MasterBackgroundMosStep - INFO - Calculating master background 2022-10-06 04:45:31,581 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Step flat_field running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2022-10-06 04:45:31,582 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2022-10-06 04:45:31,590 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Using flat field from correction pars <MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits> 2022-10-06 04:45:33,138 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 6 2022-10-06 04:45:33,143 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 3 2022-10-06 04:45:33,149 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 4 2022-10-06 04:45:33,155 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 5 2022-10-06 04:45:33,160 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 8 2022-10-06 04:45:33,166 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 10 2022-10-06 04:45:33,172 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 14 2022-10-06 04:45:33,178 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 16 2022-10-06 04:45:33,187 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Step flat_field done 2022-10-06 04:45:33,763 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Step pathloss running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2022-10-06 04:45:33,764 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'EXTENDED'} 2022-10-06 04:45:33,771 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Input exposure type is NRS_MSASPEC 2022-10-06 04:45:35,247 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 0 2022-10-06 04:45:35,254 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 1 2022-10-06 04:45:35,261 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 2 2022-10-06 04:45:35,268 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 3 2022-10-06 04:45:35,275 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 4 2022-10-06 04:45:35,283 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 5 2022-10-06 04:45:35,290 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 6 2022-10-06 04:45:35,299 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 7 2022-10-06 04:45:35,308 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Step pathloss done 2022-10-06 04:45:35,949 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Step barshadow running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2022-10-06 04:45:35,950 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'EXTENDED'} 2022-10-06 04:45:37,492 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 6 2022-10-06 04:45:37,499 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 3 2022-10-06 04:45:37,506 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 4 2022-10-06 04:45:37,512 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 5 2022-10-06 04:45:37,519 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 8 2022-10-06 04:45:37,525 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 10 2022-10-06 04:45:37,531 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 14 2022-10-06 04:45:37,538 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 16 2022-10-06 04:45:37,546 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Step barshadow done 2022-10-06 04:45:38,185 - stpipe.MasterBackgroundMosStep.photom - INFO - Step photom running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2022-10-06 04:45:38,187 - stpipe.MasterBackgroundMosStep.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'EXTENDED'} 2022-10-06 04:45:38,196 - stpipe.MasterBackgroundMosStep.photom - INFO - Using previously specified correction parameters. 2022-10-06 04:45:38,196 - stpipe.MasterBackgroundMosStep.photom - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits 2022-10-06 04:45:38,196 - stpipe.MasterBackgroundMosStep.photom - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits 2022-10-06 04:45:39,718 - stpipe.MasterBackgroundMosStep.photom - INFO - Using instrument: NIRSPEC 2022-10-06 04:45:39,718 - stpipe.MasterBackgroundMosStep.photom - INFO - detector: NRS1 2022-10-06 04:45:39,718 - stpipe.MasterBackgroundMosStep.photom - INFO - exp_type: NRS_MSASPEC 2022-10-06 04:45:39,718 - stpipe.MasterBackgroundMosStep.photom - INFO - filter: F170LP 2022-10-06 04:45:39,718 - stpipe.MasterBackgroundMosStep.photom - INFO - grating: G235M 2022-10-06 04:45:39,802 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 6 2022-10-06 04:45:39,803 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:45:39,812 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 3 2022-10-06 04:45:39,812 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:45:39,822 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 4 2022-10-06 04:45:39,822 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:45:39,831 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 5 2022-10-06 04:45:39,832 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:45:39,841 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 8 2022-10-06 04:45:39,842 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:45:39,851 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 10 2022-10-06 04:45:39,851 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:45:39,860 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 14 2022-10-06 04:45:39,860 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:45:39,870 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 16 2022-10-06 04:45:39,870 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:45:39,881 - stpipe.MasterBackgroundMosStep.photom - INFO - Step photom done 2022-10-06 04:45:39,882 - stpipe.MasterBackgroundMosStep - INFO - Creating MOS master background from background slitlets 2022-10-06 04:45:39,899 - stpipe.MasterBackgroundMosStep - INFO - Using background slitlet background_6 2022-10-06 04:45:39,900 - stpipe.MasterBackgroundMosStep - INFO - Using background slitlet background_5 2022-10-06 04:45:39,900 - stpipe.MasterBackgroundMosStep - INFO - Using background slitlet background_10 2022-10-06 04:45:39,900 - stpipe.MasterBackgroundMosStep - INFO - Using background slitlet background_16 2022-10-06 04:45:40,117 - stpipe.MasterBackgroundMosStep - INFO - Applying resampling and 1D extraction to background slits 2022-10-06 04:45:40,134 - stpipe.ResampleSpecStep - INFO - ResampleSpecStep instance created. 2022-10-06 04:45:40,847 - stpipe.ResampleSpecStep - INFO - Step ResampleSpecStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2022-10-06 04:45:40,850 - stpipe.ResampleSpecStep - INFO - Step ResampleSpecStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True} 2022-10-06 04:45:40,884 - stpipe.ResampleSpecStep - INFO - No DRIZPARS reffile 2022-10-06 04:45:40,885 - stpipe.ResampleSpecStep - INFO - using: pixfrac=1.0 2022-10-06 04:45:40,885 - stpipe.ResampleSpecStep - INFO - using: kernel='square' 2022-10-06 04:45:40,885 - stpipe.ResampleSpecStep - INFO - using: fillval='INDEF' 2022-10-06 04:45:40,885 - stpipe.ResampleSpecStep - INFO - using: wht_type='ivm' 2022-10-06 04:45:40,885 - stpipe.ResampleSpecStep - INFO - using: pscale_ratio=1.0 2022-10-06 04:45:40,886 - stpipe.ResampleSpecStep - INFO - Reorganizing data from exposure nrs_mos_with_bkgslits_srctype.fits 2022-10-06 04:45:41,728 - stpipe.ResampleSpecStep - INFO - Driz parameter kernal: square 2022-10-06 04:45:41,728 - stpipe.ResampleSpecStep - INFO - Driz parameter pixfrac: 1.0 2022-10-06 04:45:41,728 - stpipe.ResampleSpecStep - INFO - Driz parameter fillval: INDEF 2022-10-06 04:45:41,728 - stpipe.ResampleSpecStep - INFO - Driz parameter weight_type: ivm 2022-10-06 04:45:41,892 - stpipe.ResampleSpecStep - INFO - Resampling science data 2022-10-06 04:45:41,926 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 275) --> (16, 275) 2022-10-06 04:45:41,927 - stpipe.ResampleSpecStep - INFO - Resampling var_rnoise 2022-10-06 04:45:41,963 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 275) --> (16, 275) 2022-10-06 04:45:41,965 - stpipe.ResampleSpecStep - INFO - Resampling var_poisson 2022-10-06 04:45:42,000 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 275) --> (16, 275) 2022-10-06 04:45:42,003 - stpipe.ResampleSpecStep - INFO - Resampling var_flat 2022-10-06 04:45:42,039 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 275) --> (16, 275) 2022-10-06 04:45:42,066 - stpipe.ResampleSpecStep - INFO - Update S_REGION to POLYGON ICRS 53.158247003 -27.801208023 53.171031170 -27.801208023 53.171031170 -27.791101145 53.158247003 -27.791101145 2022-10-06 04:45:42,378 - stpipe.ResampleSpecStep - INFO - Driz parameter kernal: square 2022-10-06 04:45:42,379 - stpipe.ResampleSpecStep - INFO - Driz parameter pixfrac: 1.0 2022-10-06 04:45:42,379 - stpipe.ResampleSpecStep - INFO - Driz parameter fillval: INDEF 2022-10-06 04:45:42,379 - stpipe.ResampleSpecStep - INFO - Driz parameter weight_type: ivm 2022-10-06 04:45:42,560 - stpipe.ResampleSpecStep - INFO - Resampling science data 2022-10-06 04:45:42,621 - stpipe.ResampleSpecStep - INFO - Drizzling (28, 1279) --> (17, 1279) 2022-10-06 04:45:42,625 - stpipe.ResampleSpecStep - INFO - Resampling var_rnoise 2022-10-06 04:45:42,692 - stpipe.ResampleSpecStep - INFO - Drizzling (28, 1279) --> (17, 1279) 2022-10-06 04:45:42,699 - stpipe.ResampleSpecStep - INFO - Resampling var_poisson 2022-10-06 04:45:42,767 - stpipe.ResampleSpecStep - INFO - Drizzling (28, 1279) --> (17, 1279) 2022-10-06 04:45:42,774 - stpipe.ResampleSpecStep - INFO - Resampling var_flat 2022-10-06 04:45:42,840 - stpipe.ResampleSpecStep - INFO - Drizzling (28, 1279) --> (17, 1279) 2022-10-06 04:45:42,884 - stpipe.ResampleSpecStep - INFO - Update S_REGION to POLYGON ICRS 53.098754983 -27.869721829 53.157715728 -27.869721829 53.157715728 -27.822405918 53.098754983 -27.822405918 2022-10-06 04:45:43,172 - stpipe.ResampleSpecStep - INFO - Driz parameter kernal: square 2022-10-06 04:45:43,173 - stpipe.ResampleSpecStep - INFO - Driz parameter pixfrac: 1.0 2022-10-06 04:45:43,173 - stpipe.ResampleSpecStep - INFO - Driz parameter fillval: INDEF 2022-10-06 04:45:43,173 - stpipe.ResampleSpecStep - INFO - Driz parameter weight_type: ivm 2022-10-06 04:45:43,351 - stpipe.ResampleSpecStep - INFO - Resampling science data 2022-10-06 04:45:43,396 - stpipe.ResampleSpecStep - INFO - Drizzling (23, 782) --> (17, 782) 2022-10-06 04:45:43,399 - stpipe.ResampleSpecStep - INFO - Resampling var_rnoise 2022-10-06 04:45:43,443 - stpipe.ResampleSpecStep - INFO - Drizzling (23, 782) --> (17, 782) 2022-10-06 04:45:43,447 - stpipe.ResampleSpecStep - INFO - Resampling var_poisson 2022-10-06 04:45:43,491 - stpipe.ResampleSpecStep - INFO - Drizzling (23, 782) --> (17, 782) 2022-10-06 04:45:43,495 - stpipe.ResampleSpecStep - INFO - Resampling var_flat 2022-10-06 04:45:43,536 - stpipe.ResampleSpecStep - INFO - Drizzling (23, 782) --> (17, 782) 2022-10-06 04:45:43,568 - stpipe.ResampleSpecStep - INFO - Update S_REGION to POLYGON ICRS 53.125377232 -27.832055121 53.161276327 -27.832055121 53.161276327 -27.803487942 53.125377232 -27.803487942 2022-10-06 04:45:43,837 - stpipe.ResampleSpecStep - INFO - Driz parameter kernal: square 2022-10-06 04:45:43,838 - stpipe.ResampleSpecStep - INFO - Driz parameter pixfrac: 1.0 2022-10-06 04:45:43,838 - stpipe.ResampleSpecStep - INFO - Driz parameter fillval: INDEF 2022-10-06 04:45:43,838 - stpipe.ResampleSpecStep - INFO - Driz parameter weight_type: ivm 2022-10-06 04:45:44,016 - stpipe.ResampleSpecStep - INFO - Resampling science data 2022-10-06 04:45:44,068 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 1012) --> (17, 1012) 2022-10-06 04:45:44,071 - stpipe.ResampleSpecStep - INFO - Resampling var_rnoise 2022-10-06 04:45:44,124 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 1012) --> (17, 1012) 2022-10-06 04:45:44,129 - stpipe.ResampleSpecStep - INFO - Resampling var_poisson 2022-10-06 04:45:44,181 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 1012) --> (17, 1012) 2022-10-06 04:45:44,186 - stpipe.ResampleSpecStep - INFO - Resampling var_flat 2022-10-06 04:45:44,235 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 1012) --> (17, 1012) 2022-10-06 04:45:44,271 - stpipe.ResampleSpecStep - INFO - Update S_REGION to POLYGON ICRS 53.122179170 -27.859536597 53.168807410 -27.859536597 53.168807410 -27.822232031 53.122179170 -27.822232031 2022-10-06 04:45:44,321 - stpipe.ResampleSpecStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:45:44,321 - stpipe.ResampleSpecStep - INFO - Step ResampleSpecStep done 2022-10-06 04:45:44,338 - stpipe.Extract1dStep - INFO - Extract1dStep instance created. 2022-10-06 04:45:44,879 - stpipe.Extract1dStep - INFO - Step Extract1dStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2022-10-06 04:45:44,881 - stpipe.Extract1dStep - INFO - Step Extract1dStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None} 2022-10-06 04:45:44,906 - stpipe.Extract1dStep - INFO - Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json 2022-10-06 04:45:44,923 - stpipe.Extract1dStep - INFO - Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits 2022-10-06 04:45:44,965 - stpipe.Extract1dStep - INFO - Turning on source position correction for exp_type = NRS_MSASPEC 2022-10-06 04:45:44,965 - stpipe.Extract1dStep - INFO - Working on slit 6 2022-10-06 04:45:44,965 - stpipe.Extract1dStep - INFO - Setting use_source_posn to False for source type EXTENDED 2022-10-06 04:45:44,975 - stpipe.Extract1dStep - INFO - Using extraction limits: xstart=0, xstop=274, ystart=4.0, ystop=11.0 2022-10-06 04:45:45,072 - stpipe.Extract1dStep - INFO - Working on slit 5 2022-10-06 04:45:45,073 - stpipe.Extract1dStep - INFO - Setting use_source_posn to False for source type EXTENDED 2022-10-06 04:45:45,090 - stpipe.Extract1dStep - INFO - Using extraction limits: xstart=0, xstop=1278, ystart=4.5, ystop=11.5 2022-10-06 04:45:45,324 - stpipe.Extract1dStep - INFO - Working on slit 10 2022-10-06 04:45:45,325 - stpipe.Extract1dStep - INFO - Setting use_source_posn to False for source type EXTENDED 2022-10-06 04:45:45,338 - stpipe.Extract1dStep - INFO - Using extraction limits: xstart=0, xstop=781, ystart=4.5, ystop=11.5 2022-10-06 04:45:45,502 - stpipe.Extract1dStep - INFO - Working on slit 16 2022-10-06 04:45:45,502 - stpipe.Extract1dStep - INFO - Setting use_source_posn to False for source type EXTENDED 2022-10-06 04:45:45,518 - stpipe.Extract1dStep - INFO - Using extraction limits: xstart=0, xstop=1011, ystart=4.5, ystop=11.5 2022-10-06 04:45:45,719 - stpipe.Extract1dStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:45:45,719 - stpipe.Extract1dStep - INFO - Step Extract1dStep done 2022-10-06 04:45:45,719 - stpipe.MasterBackgroundMosStep - INFO - Combining 1D background spectra into master background 2022-10-06 04:45:45,719 - stpipe.MasterBackgroundMosStep - INFO - Using exposure time as the weight. 2022-10-06 04:45:45,791 - stpipe.MasterBackgroundMosStep - INFO - Accumulating data from input spectrum 1 2022-10-06 04:45:45,793 - stpipe.MasterBackgroundMosStep - INFO - Accumulating data from input spectrum 2 2022-10-06 04:45:45,799 - stpipe.MasterBackgroundMosStep - INFO - Accumulating data from input spectrum 3 2022-10-06 04:45:45,802 - stpipe.MasterBackgroundMosStep - INFO - Accumulating data from input spectrum 4 2022-10-06 04:45:45,807 - stpipe.MasterBackgroundMosStep - WARNING - 2 output pixel numbers were NaN 2022-10-06 04:45:45,807 - stpipe.MasterBackgroundMosStep - WARNING - 1 elements of output had no corresponding input data; 2022-10-06 04:45:45,807 - stpipe.MasterBackgroundMosStep - WARNING - these elements will be omitted. 2022-10-06 04:45:45,865 - stpipe.MasterBackgroundMosStep - INFO - Interpolating 1D master background to all MOS 2D slitlets 2022-10-06 04:45:47,384 - stpipe.MasterBackgroundMosStep - INFO - Expanding background for slit 6 2022-10-06 04:45:47,385 - stpipe.MasterBackgroundMosStep - INFO - Expanding background for slit 3 2022-10-06 04:45:47,385 - stpipe.MasterBackgroundMosStep - INFO - Expanding background for slit 4 2022-10-06 04:45:47,386 - stpipe.MasterBackgroundMosStep - INFO - Expanding background for slit 5 2022-10-06 04:45:47,386 - stpipe.MasterBackgroundMosStep - INFO - Expanding background for slit 8 2022-10-06 04:45:47,387 - stpipe.MasterBackgroundMosStep - INFO - Expanding background for slit 10 2022-10-06 04:45:47,387 - stpipe.MasterBackgroundMosStep - INFO - Expanding background for slit 14 2022-10-06 04:45:47,388 - stpipe.MasterBackgroundMosStep - INFO - Expanding background for slit 16 2022-10-06 04:45:47,988 - stpipe.MasterBackgroundMosStep.photom - INFO - Step photom running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2022-10-06 04:45:47,989 - stpipe.MasterBackgroundMosStep.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'photom', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': 'EXTENDED'} 2022-10-06 04:45:47,997 - stpipe.MasterBackgroundMosStep.photom - INFO - Using previously specified correction parameters. 2022-10-06 04:45:47,997 - stpipe.MasterBackgroundMosStep.photom - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits 2022-10-06 04:45:47,997 - stpipe.MasterBackgroundMosStep.photom - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits 2022-10-06 04:45:49,513 - stpipe.MasterBackgroundMosStep.photom - INFO - Using instrument: NIRSPEC 2022-10-06 04:45:49,513 - stpipe.MasterBackgroundMosStep.photom - INFO - detector: NRS1 2022-10-06 04:45:49,513 - stpipe.MasterBackgroundMosStep.photom - INFO - exp_type: NRS_MSASPEC 2022-10-06 04:45:49,513 - stpipe.MasterBackgroundMosStep.photom - INFO - filter: F170LP 2022-10-06 04:45:49,513 - stpipe.MasterBackgroundMosStep.photom - INFO - grating: G235M 2022-10-06 04:45:49,595 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 6 2022-10-06 04:45:49,595 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:45:49,605 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 3 2022-10-06 04:45:49,605 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:45:49,615 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 4 2022-10-06 04:45:49,615 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:45:49,625 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 5 2022-10-06 04:45:49,625 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:45:49,636 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 8 2022-10-06 04:45:49,637 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:45:49,646 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 10 2022-10-06 04:45:49,647 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:45:49,657 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 14 2022-10-06 04:45:49,657 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:45:49,668 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 16 2022-10-06 04:45:49,668 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:45:49,681 - stpipe.MasterBackgroundMosStep.photom - INFO - Step photom done 2022-10-06 04:45:50,354 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Step barshadow running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2022-10-06 04:45:50,356 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'barshadow', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': 'EXTENDED'} 2022-10-06 04:45:51,891 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 6 2022-10-06 04:45:51,898 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 3 2022-10-06 04:45:51,904 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 4 2022-10-06 04:45:51,911 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 5 2022-10-06 04:45:51,917 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 8 2022-10-06 04:45:51,923 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 10 2022-10-06 04:45:51,929 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 14 2022-10-06 04:45:51,936 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 16 2022-10-06 04:45:51,945 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Step barshadow done 2022-10-06 04:45:52,538 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Step pathloss running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2022-10-06 04:45:52,539 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'pathloss', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': 'EXTENDED'} 2022-10-06 04:45:52,550 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Input exposure type is NRS_MSASPEC 2022-10-06 04:45:54,074 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 0 2022-10-06 04:45:54,081 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 1 2022-10-06 04:45:54,089 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 2 2022-10-06 04:45:54,096 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 3 2022-10-06 04:45:54,105 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 4 2022-10-06 04:45:54,113 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 5 2022-10-06 04:45:54,120 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 6 2022-10-06 04:45:54,127 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 7 2022-10-06 04:45:54,137 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Step pathloss done 2022-10-06 04:45:54,803 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Step flat_field running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2022-10-06 04:45:54,805 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'flat_field', 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': True} 2022-10-06 04:45:54,813 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Using flat field from correction pars <MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits> 2022-10-06 04:45:56,311 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 6 2022-10-06 04:45:56,317 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 3 2022-10-06 04:45:56,322 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 4 2022-10-06 04:45:56,328 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 5 2022-10-06 04:45:56,334 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 8 2022-10-06 04:45:56,339 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 10 2022-10-06 04:45:56,344 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 14 2022-10-06 04:45:56,350 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 16 2022-10-06 04:45:56,360 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Step flat_field done 2022-10-06 04:45:56,365 - stpipe.MasterBackgroundMosStep - INFO - Subtracting master background from each MOS source slitlet 2022-10-06 04:45:58,697 - stpipe.MasterBackgroundMosStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:45:58,697 - stpipe.MasterBackgroundMosStep - INFO - Step MasterBackgroundMosStep done -------------------------------Captured log call-------------------------------- INFO stpipe.MasterBackgroundMosStep:step.py:366 MasterBackgroundMosStep instance created. INFO stpipe.MasterBackgroundMosStep.flat_field:step.py:366 FlatFieldStep instance created. INFO stpipe.MasterBackgroundMosStep.pathloss:step.py:366 PathLossStep instance created. INFO stpipe.MasterBackgroundMosStep.barshadow:step.py:366 BarShadowStep instance created. INFO stpipe.MasterBackgroundMosStep.photom:step.py:366 PhotomStep instance created. INFO stpipe.MasterBackgroundMosStep:step.py:430 Step MasterBackgroundMosStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundMosStep:step.py:434 Step MasterBackgroundMosStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}}} INFO stpipe.MasterBackgroundMosStep:master_background_mos_step.py:132 Calculating master background INFO stpipe.MasterBackgroundMosStep.flat_field:step.py:430 Step flat_field running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundMosStep.flat_field:step.py:434 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field_step.py:74 Input is MultiSlitModel of exposure type NRS_MSASPEC DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field_step.py:201 No reference found for type FLAT DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field_step.py:199 Using FFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field_step.py:199 Using SFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field_step.py:199 Using DFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 6 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 6 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 2783 out of 6875 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 2783 out of 6875 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:2010 1 flat-field values <= 0 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:2010 1 flat-field values <= 0 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 3 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 3 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 6707 out of 19366 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 6707 out of 19366 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:2010 14 flat-field values <= 0 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:2010 14 flat-field values <= 0 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 4 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 4 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 6252 out of 17963 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 6252 out of 17963 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:2010 14 flat-field values <= 0 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:2010 14 flat-field values <= 0 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 5 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 5 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 16839 out of 35812 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 16839 out of 35812 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:2010 18 flat-field values <= 0 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:2010 18 flat-field values <= 0 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 8 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 8 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 5129 out of 14743 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 5129 out of 14743 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:2010 7 flat-field values <= 0 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:2010 7 flat-field values <= 0 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 10 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 10 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 6362 out of 17986 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 6362 out of 17986 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:2010 8 flat-field values <= 0 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:2010 8 flat-field values <= 0 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 14 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 14 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 9788 out of 24450 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 9788 out of 24450 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:2010 7 flat-field values <= 0 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:2010 7 flat-field values <= 0 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 16 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 16 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 10317 out of 25300 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 10317 out of 25300 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:2010 16 flat-field values <= 0 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:2010 16 flat-field values <= 0 INFO stpipe.MasterBackgroundMosStep.flat_field:step.py:546 Step flat_field done INFO stpipe.MasterBackgroundMosStep.pathloss:step.py:430 Step pathloss running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundMosStep.pathloss:step.py:434 Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'EXTENDED'} INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss_step.py:38 Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:232 Input exposure type is NRS_MSASPEC INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:232 Input exposure type is NRS_MSASPEC INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 0 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 0 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 1 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 1 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 2 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 2 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 3 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 3 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 4 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 4 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 5 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 5 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 6 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 6 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 7 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 7 INFO stpipe.MasterBackgroundMosStep.pathloss:step.py:546 Step pathloss done INFO stpipe.MasterBackgroundMosStep.barshadow:step.py:430 Step barshadow running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundMosStep.barshadow:step.py:434 Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'EXTENDED'} INFO stpipe.MasterBackgroundMosStep.barshadow:barshadow_step.py:58 Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits DEBUG stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 6 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 6 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 5 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 5 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 14 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 14 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 16 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 16 INFO stpipe.MasterBackgroundMosStep.barshadow:step.py:546 Step barshadow done INFO stpipe.MasterBackgroundMosStep.photom:step.py:430 Step photom running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundMosStep.photom:step.py:434 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'EXTENDED'} DEBUG stpipe.MasterBackgroundMosStep.photom:photom_step.py:35 Input is MultiSlitModel INFO stpipe.MasterBackgroundMosStep.photom:photom_step.py:55 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits INFO stpipe.MasterBackgroundMosStep.photom:photom_step.py:56 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits INFO stpipe.MasterBackgroundMosStep.photom:photom.py:144 Using instrument: NIRSPEC INFO stpipe.MasterBackgroundMosStep.photom:photom.py:144 Using instrument: NIRSPEC INFO stpipe.MasterBackgroundMosStep.photom:photom.py:145 detector: NRS1 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:145 detector: NRS1 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:146 exp_type: NRS_MSASPEC INFO stpipe.MasterBackgroundMosStep.photom:photom.py:146 exp_type: NRS_MSASPEC INFO stpipe.MasterBackgroundMosStep.photom:photom.py:148 filter: F170LP INFO stpipe.MasterBackgroundMosStep.photom:photom.py:148 filter: F170LP INFO stpipe.MasterBackgroundMosStep.photom:photom.py:152 grating: G235M INFO stpipe.MasterBackgroundMosStep.photom:photom.py:152 grating: G235M INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 6 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 6 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 3 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 3 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 4 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 4 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 5 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 5 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 8 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 8 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 10 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 14 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 14 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 16 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 16 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:step.py:546 Step photom done DEBUG stpipe.MasterBackgroundMosStep:master_background_mos_step.py:246 Calculating 1D master background INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:97 Creating MOS master background from background slitlets INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:97 Creating MOS master background from background slitlets INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:105 Using background slitlet background_6 INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:105 Using background slitlet background_6 INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:105 Using background slitlet background_5 INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:105 Using background slitlet background_5 INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:105 Using background slitlet background_10 INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:105 Using background slitlet background_10 INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:105 Using background slitlet background_16 INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:105 Using background slitlet background_16 INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:115 Applying resampling and 1D extraction to background slits INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:115 Applying resampling and 1D extraction to background slits DEBUG stpipe.MasterBackgroundMosStep:step.py:862 Retrieving step PARS-RESAMPLESPECSTEP parameters from CRDS DEBUG stpipe.MasterBackgroundMosStep:step.py:883 No PARS-RESAMPLESPECSTEP reference files found. INFO stpipe.ResampleSpecStep:step.py:366 ResampleSpecStep instance created. INFO stpipe.ResampleSpecStep:step.py:430 Step ResampleSpecStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.ResampleSpecStep:step.py:434 Step ResampleSpecStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True} INFO stpipe.ResampleSpecStep:resample_spec_step.py:60 No DRIZPARS reffile INFO stpipe.ResampleSpecStep:resample_step.py:257 using: pixfrac=1.0 INFO stpipe.ResampleSpecStep:resample_step.py:257 using: pixfrac=1.0 INFO stpipe.ResampleSpecStep:resample_step.py:257 using: kernel='square' INFO stpipe.ResampleSpecStep:resample_step.py:257 using: kernel='square' INFO stpipe.ResampleSpecStep:resample_step.py:257 using: fillval='INDEF' INFO stpipe.ResampleSpecStep:resample_step.py:257 using: fillval='INDEF' INFO stpipe.ResampleSpecStep:resample_step.py:257 using: wht_type='ivm' INFO stpipe.ResampleSpecStep:resample_step.py:257 using: wht_type='ivm' INFO stpipe.ResampleSpecStep:resample_step.py:257 using: pscale_ratio=1.0 INFO stpipe.ResampleSpecStep:resample_step.py:257 using: pscale_ratio=1.0 INFO stpipe.ResampleSpecStep:exp_to_source.py:37 Reorganizing data from exposure nrs_mos_with_bkgslits_srctype.fits INFO stpipe.ResampleSpecStep:exp_to_source.py:37 Reorganizing data from exposure nrs_mos_with_bkgslits_srctype.fits DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 37 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 37 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 36 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 36 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 38 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 38 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 39 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 39 INFO stpipe.ResampleSpecStep:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.ResampleSpecStep:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.ResampleSpecStep:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.ResampleSpecStep:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.ResampleSpecStep:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.ResampleSpecStep:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.ResampleSpecStep:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.ResampleSpecStep:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.ResampleSpecStep:resample.py:210 Resampling science data INFO stpipe.ResampleSpecStep:resample.py:210 Resampling science data DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (16, 275) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (16, 275) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (25, 275) --> (16, 275) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (25, 275) --> (16, 275) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_rnoise INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_rnoise DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (16, 275) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (16, 275) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (25, 275) --> (16, 275) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (25, 275) --> (16, 275) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_poisson INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_poisson DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (16, 275) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (16, 275) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (25, 275) --> (16, 275) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (25, 275) --> (16, 275) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_flat INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_flat DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (16, 275) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (16, 275) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (25, 275) --> (16, 275) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (25, 275) --> (16, 275) INFO stpipe.ResampleSpecStep:util.py:1060 Update S_REGION to POLYGON ICRS 53.158247003 -27.801208023 53.171031170 -27.801208023 53.171031170 -27.791101145 53.158247003 -27.791101145 INFO stpipe.ResampleSpecStep:util.py:1060 Update S_REGION to POLYGON ICRS 53.158247003 -27.801208023 53.171031170 -27.801208023 53.171031170 -27.791101145 53.158247003 -27.791101145 INFO stpipe.ResampleSpecStep:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.ResampleSpecStep:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.ResampleSpecStep:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.ResampleSpecStep:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.ResampleSpecStep:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.ResampleSpecStep:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.ResampleSpecStep:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.ResampleSpecStep:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.ResampleSpecStep:resample.py:210 Resampling science data INFO stpipe.ResampleSpecStep:resample.py:210 Resampling science data DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (17, 1279) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (17, 1279) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (28, 1279) --> (17, 1279) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (28, 1279) --> (17, 1279) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_rnoise INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_rnoise DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1279) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (28, 1279) --> (17, 1279) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (28, 1279) --> (17, 1279) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_poisson INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_poisson DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1279) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (28, 1279) --> (17, 1279) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (28, 1279) --> (17, 1279) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_flat INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_flat DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1279) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (28, 1279) --> (17, 1279) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (28, 1279) --> (17, 1279) INFO stpipe.ResampleSpecStep:util.py:1060 Update S_REGION to POLYGON ICRS 53.098754983 -27.869721829 53.157715728 -27.869721829 53.157715728 -27.822405918 53.098754983 -27.822405918 INFO stpipe.ResampleSpecStep:util.py:1060 Update S_REGION to POLYGON ICRS 53.098754983 -27.869721829 53.157715728 -27.869721829 53.157715728 -27.822405918 53.098754983 -27.822405918 INFO stpipe.ResampleSpecStep:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.ResampleSpecStep:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.ResampleSpecStep:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.ResampleSpecStep:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.ResampleSpecStep:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.ResampleSpecStep:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.ResampleSpecStep:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.ResampleSpecStep:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.ResampleSpecStep:resample.py:210 Resampling science data INFO stpipe.ResampleSpecStep:resample.py:210 Resampling science data DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (17, 782) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (17, 782) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (23, 782) --> (17, 782) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (23, 782) --> (17, 782) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_rnoise INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_rnoise DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 782) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 782) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (23, 782) --> (17, 782) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (23, 782) --> (17, 782) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_poisson INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_poisson DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 782) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 782) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (23, 782) --> (17, 782) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (23, 782) --> (17, 782) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_flat INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_flat DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 782) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 782) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (23, 782) --> (17, 782) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (23, 782) --> (17, 782) INFO stpipe.ResampleSpecStep:util.py:1060 Update S_REGION to POLYGON ICRS 53.125377232 -27.832055121 53.161276327 -27.832055121 53.161276327 -27.803487942 53.125377232 -27.803487942 INFO stpipe.ResampleSpecStep:util.py:1060 Update S_REGION to POLYGON ICRS 53.125377232 -27.832055121 53.161276327 -27.832055121 53.161276327 -27.803487942 53.125377232 -27.803487942 INFO stpipe.ResampleSpecStep:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.ResampleSpecStep:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.ResampleSpecStep:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.ResampleSpecStep:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.ResampleSpecStep:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.ResampleSpecStep:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.ResampleSpecStep:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.ResampleSpecStep:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.ResampleSpecStep:resample.py:210 Resampling science data INFO stpipe.ResampleSpecStep:resample.py:210 Resampling science data DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (17, 1012) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (17, 1012) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (25, 1012) --> (17, 1012) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (25, 1012) --> (17, 1012) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_rnoise INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_rnoise DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1012) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (25, 1012) --> (17, 1012) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (25, 1012) --> (17, 1012) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_poisson INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_poisson DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1012) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (25, 1012) --> (17, 1012) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (25, 1012) --> (17, 1012) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_flat INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_flat DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1012) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (25, 1012) --> (17, 1012) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (25, 1012) --> (17, 1012) INFO stpipe.ResampleSpecStep:util.py:1060 Update S_REGION to POLYGON ICRS 53.122179170 -27.859536597 53.168807410 -27.859536597 53.168807410 -27.822232031 53.122179170 -27.822232031 INFO stpipe.ResampleSpecStep:util.py:1060 Update S_REGION to POLYGON ICRS 53.122179170 -27.859536597 53.168807410 -27.859536597 53.168807410 -27.822232031 53.122179170 -27.822232031 INFO stpipe.ResampleSpecStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.ResampleSpecStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.ResampleSpecStep:step.py:546 Step ResampleSpecStep done DEBUG stpipe.MasterBackgroundMosStep:step.py:862 Retrieving step PARS-EXTRACT1DSTEP parameters from CRDS DEBUG stpipe.MasterBackgroundMosStep:step.py:883 No PARS-EXTRACT1DSTEP reference files found. INFO stpipe.Extract1dStep:step.py:366 Extract1dStep instance created. INFO stpipe.Extract1dStep:step.py:430 Step Extract1dStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.Extract1dStep:step.py:434 Step Extract1dStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None} DEBUG stpipe.Extract1dStep:extract_1d_step.py:159 Input is a MultiSlitModel INFO stpipe.Extract1dStep:extract_1d_step.py:389 Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json INFO stpipe.Extract1dStep:extract_1d_step.py:397 Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits INFO stpipe.Extract1dStep:extract.py:2780 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Extract1dStep:extract.py:2780 Turning on source position correction for exp_type = NRS_MSASPEC DEBUG stpipe.Extract1dStep:extract.py:2805 Input is a MultiSlitModel. DEBUG stpipe.Extract1dStep:extract.py:2805 Input is a MultiSlitModel. INFO stpipe.Extract1dStep:extract.py:2813 Working on slit 6 INFO stpipe.Extract1dStep:extract.py:2813 Working on slit 6 DEBUG stpipe.Extract1dStep:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Extract1dStep:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> INFO stpipe.Extract1dStep:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:3614 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Extract1dStep:extract.py:440 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:440 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:441 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:441 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:442 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:442 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:444 initial xstop = 274 DEBUG stpipe.Extract1dStep:extract.py:444 initial xstop = 274 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:446 initial ystop = 15 DEBUG stpipe.Extract1dStep:extract.py:446 initial ystop = 15 DEBUG stpipe.Extract1dStep:extract.py:447 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:447 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:448 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:451 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:451 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:452 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:452 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:453 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:453 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:454 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:454 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:1655 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1655 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1723 Converting extraction limits to [[3.5], [11.5]] DEBUG stpipe.Extract1dStep:extract.py:1723 Converting extraction limits to [[3.5], [11.5]] INFO stpipe.Extract1dStep:extract.py:3433 Using extraction limits: xstart=0, xstop=274, ystart=4.0, ystop=11.0 INFO stpipe.Extract1dStep:extract.py:3433 Using extraction limits: xstart=0, xstop=274, ystart=4.0, ystop=11.0 INFO stpipe.Extract1dStep:extract.py:2813 Working on slit 5 INFO stpipe.Extract1dStep:extract.py:2813 Working on slit 5 DEBUG stpipe.Extract1dStep:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Extract1dStep:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> INFO stpipe.Extract1dStep:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:3614 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Extract1dStep:extract.py:440 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:440 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:441 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:441 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:442 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:442 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:444 initial xstop = 1278 DEBUG stpipe.Extract1dStep:extract.py:444 initial xstop = 1278 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:446 initial ystop = 16 DEBUG stpipe.Extract1dStep:extract.py:446 initial ystop = 16 DEBUG stpipe.Extract1dStep:extract.py:447 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:447 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:448 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:451 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:451 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:452 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:452 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:453 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:453 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:454 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:454 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:1655 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1655 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] DEBUG stpipe.Extract1dStep:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] INFO stpipe.Extract1dStep:extract.py:3433 Using extraction limits: xstart=0, xstop=1278, ystart=4.5, ystop=11.5 INFO stpipe.Extract1dStep:extract.py:3433 Using extraction limits: xstart=0, xstop=1278, ystart=4.5, ystop=11.5 INFO stpipe.Extract1dStep:extract.py:2813 Working on slit 10 INFO stpipe.Extract1dStep:extract.py:2813 Working on slit 10 DEBUG stpipe.Extract1dStep:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Extract1dStep:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> INFO stpipe.Extract1dStep:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:3614 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Extract1dStep:extract.py:440 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:440 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:441 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:441 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:442 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:442 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:444 initial xstop = 781 DEBUG stpipe.Extract1dStep:extract.py:444 initial xstop = 781 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:446 initial ystop = 16 DEBUG stpipe.Extract1dStep:extract.py:446 initial ystop = 16 DEBUG stpipe.Extract1dStep:extract.py:447 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:447 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:448 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:451 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:451 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:452 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:452 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:453 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:453 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:454 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:454 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:1655 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1655 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] DEBUG stpipe.Extract1dStep:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] INFO stpipe.Extract1dStep:extract.py:3433 Using extraction limits: xstart=0, xstop=781, ystart=4.5, ystop=11.5 INFO stpipe.Extract1dStep:extract.py:3433 Using extraction limits: xstart=0, xstop=781, ystart=4.5, ystop=11.5 INFO stpipe.Extract1dStep:extract.py:2813 Working on slit 16 INFO stpipe.Extract1dStep:extract.py:2813 Working on slit 16 DEBUG stpipe.Extract1dStep:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Extract1dStep:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> INFO stpipe.Extract1dStep:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:3614 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Extract1dStep:extract.py:440 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:440 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:441 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:441 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:442 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:442 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:444 initial xstop = 1011 DEBUG stpipe.Extract1dStep:extract.py:444 initial xstop = 1011 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:446 initial ystop = 16 DEBUG stpipe.Extract1dStep:extract.py:446 initial ystop = 16 DEBUG stpipe.Extract1dStep:extract.py:447 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:447 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:448 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:451 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:451 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:452 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:452 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:453 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:453 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:454 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:454 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:1655 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1655 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] DEBUG stpipe.Extract1dStep:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] INFO stpipe.Extract1dStep:extract.py:3433 Using extraction limits: xstart=0, xstop=1011, ystart=4.5, ystop=11.5 INFO stpipe.Extract1dStep:extract.py:3433 Using extraction limits: xstart=0, xstop=1011, ystart=4.5, ystop=11.5 DEBUG stpipe.Extract1dStep:extract.py:2952 Not copying from the INT_TIMES table because this is not a TSO exposure. DEBUG stpipe.Extract1dStep:extract.py:2952 Not copying from the INT_TIMES table because this is not a TSO exposure. INFO stpipe.Extract1dStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.Extract1dStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.Extract1dStep:step.py:546 Step Extract1dStep done INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:120 Combining 1D background spectra into master background INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:120 Combining 1D background spectra into master background DEBUG stpipe.MasterBackgroundMosStep:combine1d.py:564 Using exptime_key = exposure_time. DEBUG stpipe.MasterBackgroundMosStep:combine1d.py:564 Using exptime_key = exposure_time. INFO stpipe.MasterBackgroundMosStep:combine1d.py:529 Using exposure time as the weight. INFO stpipe.MasterBackgroundMosStep:combine1d.py:529 Using exposure time as the weight. INFO stpipe.MasterBackgroundMosStep:combine1d.py:204 Accumulating data from input spectrum 1 INFO stpipe.MasterBackgroundMosStep:combine1d.py:204 Accumulating data from input spectrum 1 INFO stpipe.MasterBackgroundMosStep:combine1d.py:204 Accumulating data from input spectrum 2 INFO stpipe.MasterBackgroundMosStep:combine1d.py:204 Accumulating data from input spectrum 2 INFO stpipe.MasterBackgroundMosStep:combine1d.py:204 Accumulating data from input spectrum 3 INFO stpipe.MasterBackgroundMosStep:combine1d.py:204 Accumulating data from input spectrum 3 INFO stpipe.MasterBackgroundMosStep:combine1d.py:204 Accumulating data from input spectrum 4 INFO stpipe.MasterBackgroundMosStep:combine1d.py:204 Accumulating data from input spectrum 4 WARNING stpipe.MasterBackgroundMosStep:combine1d.py:232 2 output pixel numbers were NaN WARNING stpipe.MasterBackgroundMosStep:combine1d.py:232 2 output pixel numbers were NaN WARNING stpipe.MasterBackgroundMosStep:combine1d.py:241 1 elements of output had no corresponding input data; WARNING stpipe.MasterBackgroundMosStep:combine1d.py:241 1 elements of output had no corresponding input data; WARNING stpipe.MasterBackgroundMosStep:combine1d.py:243 these elements will be omitted. WARNING stpipe.MasterBackgroundMosStep:combine1d.py:243 these elements will be omitted. INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:69 Interpolating 1D master background to all MOS 2D slitlets INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:69 Interpolating 1D master background to all MOS 2D slitlets INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 6 INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 6 INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 3 INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 3 INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 4 INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 4 INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 5 INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 5 INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 8 INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 8 INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 10 INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 10 INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 14 INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 14 INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 16 INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 16 INFO stpipe.MasterBackgroundMosStep.photom:step.py:430 Step photom running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundMosStep.photom:step.py:434 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'photom', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': 'EXTENDED'} DEBUG stpipe.MasterBackgroundMosStep.photom:photom_step.py:35 Input is MultiSlitModel INFO stpipe.MasterBackgroundMosStep.photom:photom_step.py:46 Using previously specified correction parameters. INFO stpipe.MasterBackgroundMosStep.photom:photom_step.py:55 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits INFO stpipe.MasterBackgroundMosStep.photom:photom_step.py:56 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits INFO stpipe.MasterBackgroundMosStep.photom:photom.py:144 Using instrument: NIRSPEC INFO stpipe.MasterBackgroundMosStep.photom:photom.py:144 Using instrument: NIRSPEC INFO stpipe.MasterBackgroundMosStep.photom:photom.py:145 detector: NRS1 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:145 detector: NRS1 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:146 exp_type: NRS_MSASPEC INFO stpipe.MasterBackgroundMosStep.photom:photom.py:146 exp_type: NRS_MSASPEC INFO stpipe.MasterBackgroundMosStep.photom:photom.py:148 filter: F170LP INFO stpipe.MasterBackgroundMosStep.photom:photom.py:148 filter: F170LP INFO stpipe.MasterBackgroundMosStep.photom:photom.py:152 grating: G235M INFO stpipe.MasterBackgroundMosStep.photom:photom.py:152 grating: G235M INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 6 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 6 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 3 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 3 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 4 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 4 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 5 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 5 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 8 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 8 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 10 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 14 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 14 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 16 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 16 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:step.py:546 Step photom done INFO stpipe.MasterBackgroundMosStep.barshadow:step.py:430 Step barshadow running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundMosStep.barshadow:step.py:434 Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'barshadow', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': 'EXTENDED'} DEBUG stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 6 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 6 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 5 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 5 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 14 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 14 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 16 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 16 INFO stpipe.MasterBackgroundMosStep.barshadow:step.py:546 Step barshadow done INFO stpipe.MasterBackgroundMosStep.pathloss:step.py:430 Step pathloss running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundMosStep.pathloss:step.py:434 Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'pathloss', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': 'EXTENDED'} INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:232 Input exposure type is NRS_MSASPEC INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:232 Input exposure type is NRS_MSASPEC INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 0 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 0 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 1 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 1 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 2 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 2 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 3 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 3 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 4 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 4 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 5 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 5 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 6 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 6 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 7 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 7 INFO stpipe.MasterBackgroundMosStep.pathloss:step.py:546 Step pathloss done INFO stpipe.MasterBackgroundMosStep.flat_field:step.py:430 Step flat_field running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundMosStep.flat_field:step.py:434 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'flat_field', 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': True} DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field_step.py:74 Input is MultiSlitModel of exposure type NRS_MSASPEC INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field_step.py:110 Using flat field from correction pars <MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits> DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 6 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 6 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 3 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 3 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 4 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 4 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 5 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 5 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 8 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 8 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 10 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 10 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 14 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 14 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 16 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 16 INFO stpipe.MasterBackgroundMosStep.flat_field:step.py:546 Step flat_field done INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:37 Subtracting master background from each MOS source slitlet INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:37 Subtracting master background from each MOS source slitlet INFO stpipe.MasterBackgroundMosStep:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.MasterBackgroundMosStep:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.MasterBackgroundMosStep:step.py:546 Step MasterBackgroundMosStep done INFO stpipe.MasterBackgroundMosStep:step.py:430 Step MasterBackgroundMosStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundMosStep:step.py:434 Step MasterBackgroundMosStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'masterbackgroundmosstep', 'search_output_file': True, 'input_dir': '', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}}} INFO stpipe.MasterBackgroundMosStep:master_background_mos_step.py:132 Calculating master background INFO stpipe.MasterBackgroundMosStep.flat_field:step.py:430 Step flat_field running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundMosStep.flat_field:step.py:434 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field_step.py:74 Input is MultiSlitModel of exposure type NRS_MSASPEC INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field_step.py:110 Using flat field from correction pars <MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits> DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 6 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 6 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 3 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 3 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 4 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 4 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 5 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 5 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 8 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 8 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 10 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 10 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 14 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 14 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 16 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 16 INFO stpipe.MasterBackgroundMosStep.flat_field:step.py:546 Step flat_field done INFO stpipe.MasterBackgroundMosStep.pathloss:step.py:430 Step pathloss running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundMosStep.pathloss:step.py:434 Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'EXTENDED'} INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:232 Input exposure type is NRS_MSASPEC INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:232 Input exposure type is NRS_MSASPEC INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 0 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 0 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 1 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 1 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 2 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 2 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 3 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 3 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 4 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 4 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 5 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 5 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 6 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 6 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 7 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 7 INFO stpipe.MasterBackgroundMosStep.pathloss:step.py:546 Step pathloss done INFO stpipe.MasterBackgroundMosStep.barshadow:step.py:430 Step barshadow running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundMosStep.barshadow:step.py:434 Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'EXTENDED'} DEBUG stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 6 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 6 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 5 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 5 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 14 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 14 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 16 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 16 INFO stpipe.MasterBackgroundMosStep.barshadow:step.py:546 Step barshadow done INFO stpipe.MasterBackgroundMosStep.photom:step.py:430 Step photom running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundMosStep.photom:step.py:434 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'EXTENDED'} DEBUG stpipe.MasterBackgroundMosStep.photom:photom_step.py:35 Input is MultiSlitModel INFO stpipe.MasterBackgroundMosStep.photom:photom_step.py:46 Using previously specified correction parameters. INFO stpipe.MasterBackgroundMosStep.photom:photom_step.py:55 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits INFO stpipe.MasterBackgroundMosStep.photom:photom_step.py:56 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits INFO stpipe.MasterBackgroundMosStep.photom:photom.py:144 Using instrument: NIRSPEC INFO stpipe.MasterBackgroundMosStep.photom:photom.py:144 Using instrument: NIRSPEC INFO stpipe.MasterBackgroundMosStep.photom:photom.py:145 detector: NRS1 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:145 detector: NRS1 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:146 exp_type: NRS_MSASPEC INFO stpipe.MasterBackgroundMosStep.photom:photom.py:146 exp_type: NRS_MSASPEC INFO stpipe.MasterBackgroundMosStep.photom:photom.py:148 filter: F170LP INFO stpipe.MasterBackgroundMosStep.photom:photom.py:148 filter: F170LP INFO stpipe.MasterBackgroundMosStep.photom:photom.py:152 grating: G235M INFO stpipe.MasterBackgroundMosStep.photom:photom.py:152 grating: G235M INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 6 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 6 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 3 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 3 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 4 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 4 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 5 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 5 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 8 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 8 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 10 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 14 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 14 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 16 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 16 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:step.py:546 Step photom done DEBUG stpipe.MasterBackgroundMosStep:master_background_mos_step.py:246 Calculating 1D master background INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:97 Creating MOS master background from background slitlets INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:97 Creating MOS master background from background slitlets INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:105 Using background slitlet background_6 INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:105 Using background slitlet background_6 INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:105 Using background slitlet background_5 INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:105 Using background slitlet background_5 INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:105 Using background slitlet background_10 INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:105 Using background slitlet background_10 INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:105 Using background slitlet background_16 INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:105 Using background slitlet background_16 INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:115 Applying resampling and 1D extraction to background slits INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:115 Applying resampling and 1D extraction to background slits DEBUG stpipe.MasterBackgroundMosStep:step.py:862 Retrieving step PARS-RESAMPLESPECSTEP parameters from CRDS DEBUG stpipe.MasterBackgroundMosStep:step.py:883 No PARS-RESAMPLESPECSTEP reference files found. INFO stpipe.ResampleSpecStep:step.py:366 ResampleSpecStep instance created. INFO stpipe.ResampleSpecStep:step.py:430 Step ResampleSpecStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.ResampleSpecStep:step.py:434 Step ResampleSpecStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True} INFO stpipe.ResampleSpecStep:resample_spec_step.py:60 No DRIZPARS reffile INFO stpipe.ResampleSpecStep:resample_step.py:257 using: pixfrac=1.0 INFO stpipe.ResampleSpecStep:resample_step.py:257 using: pixfrac=1.0 INFO stpipe.ResampleSpecStep:resample_step.py:257 using: kernel='square' INFO stpipe.ResampleSpecStep:resample_step.py:257 using: kernel='square' INFO stpipe.ResampleSpecStep:resample_step.py:257 using: fillval='INDEF' INFO stpipe.ResampleSpecStep:resample_step.py:257 using: fillval='INDEF' INFO stpipe.ResampleSpecStep:resample_step.py:257 using: wht_type='ivm' INFO stpipe.ResampleSpecStep:resample_step.py:257 using: wht_type='ivm' INFO stpipe.ResampleSpecStep:resample_step.py:257 using: pscale_ratio=1.0 INFO stpipe.ResampleSpecStep:resample_step.py:257 using: pscale_ratio=1.0 INFO stpipe.ResampleSpecStep:exp_to_source.py:37 Reorganizing data from exposure nrs_mos_with_bkgslits_srctype.fits INFO stpipe.ResampleSpecStep:exp_to_source.py:37 Reorganizing data from exposure nrs_mos_with_bkgslits_srctype.fits DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 37 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 37 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 36 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 36 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 38 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 38 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 39 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 39 INFO stpipe.ResampleSpecStep:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.ResampleSpecStep:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.ResampleSpecStep:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.ResampleSpecStep:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.ResampleSpecStep:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.ResampleSpecStep:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.ResampleSpecStep:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.ResampleSpecStep:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.ResampleSpecStep:resample.py:210 Resampling science data INFO stpipe.ResampleSpecStep:resample.py:210 Resampling science data DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (16, 275) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (16, 275) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (25, 275) --> (16, 275) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (25, 275) --> (16, 275) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_rnoise INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_rnoise DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (16, 275) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (16, 275) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (25, 275) --> (16, 275) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (25, 275) --> (16, 275) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_poisson INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_poisson DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (16, 275) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (16, 275) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (25, 275) --> (16, 275) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (25, 275) --> (16, 275) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_flat INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_flat DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (16, 275) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (16, 275) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (25, 275) --> (16, 275) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (25, 275) --> (16, 275) INFO stpipe.ResampleSpecStep:util.py:1060 Update S_REGION to POLYGON ICRS 53.158247003 -27.801208023 53.171031170 -27.801208023 53.171031170 -27.791101145 53.158247003 -27.791101145 INFO stpipe.ResampleSpecStep:util.py:1060 Update S_REGION to POLYGON ICRS 53.158247003 -27.801208023 53.171031170 -27.801208023 53.171031170 -27.791101145 53.158247003 -27.791101145 INFO stpipe.ResampleSpecStep:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.ResampleSpecStep:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.ResampleSpecStep:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.ResampleSpecStep:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.ResampleSpecStep:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.ResampleSpecStep:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.ResampleSpecStep:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.ResampleSpecStep:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.ResampleSpecStep:resample.py:210 Resampling science data INFO stpipe.ResampleSpecStep:resample.py:210 Resampling science data DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (17, 1279) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (17, 1279) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (28, 1279) --> (17, 1279) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (28, 1279) --> (17, 1279) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_rnoise INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_rnoise DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1279) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (28, 1279) --> (17, 1279) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (28, 1279) --> (17, 1279) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_poisson INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_poisson DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1279) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (28, 1279) --> (17, 1279) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (28, 1279) --> (17, 1279) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_flat INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_flat DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1279) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (28, 1279) --> (17, 1279) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (28, 1279) --> (17, 1279) INFO stpipe.ResampleSpecStep:util.py:1060 Update S_REGION to POLYGON ICRS 53.098754983 -27.869721829 53.157715728 -27.869721829 53.157715728 -27.822405918 53.098754983 -27.822405918 INFO stpipe.ResampleSpecStep:util.py:1060 Update S_REGION to POLYGON ICRS 53.098754983 -27.869721829 53.157715728 -27.869721829 53.157715728 -27.822405918 53.098754983 -27.822405918 INFO stpipe.ResampleSpecStep:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.ResampleSpecStep:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.ResampleSpecStep:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.ResampleSpecStep:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.ResampleSpecStep:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.ResampleSpecStep:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.ResampleSpecStep:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.ResampleSpecStep:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.ResampleSpecStep:resample.py:210 Resampling science data INFO stpipe.ResampleSpecStep:resample.py:210 Resampling science data DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (17, 782) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (17, 782) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (23, 782) --> (17, 782) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (23, 782) --> (17, 782) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_rnoise INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_rnoise DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 782) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 782) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (23, 782) --> (17, 782) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (23, 782) --> (17, 782) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_poisson INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_poisson DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 782) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 782) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (23, 782) --> (17, 782) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (23, 782) --> (17, 782) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_flat INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_flat DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 782) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 782) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (23, 782) --> (17, 782) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (23, 782) --> (17, 782) INFO stpipe.ResampleSpecStep:util.py:1060 Update S_REGION to POLYGON ICRS 53.125377232 -27.832055121 53.161276327 -27.832055121 53.161276327 -27.803487942 53.125377232 -27.803487942 INFO stpipe.ResampleSpecStep:util.py:1060 Update S_REGION to POLYGON ICRS 53.125377232 -27.832055121 53.161276327 -27.832055121 53.161276327 -27.803487942 53.125377232 -27.803487942 INFO stpipe.ResampleSpecStep:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.ResampleSpecStep:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.ResampleSpecStep:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.ResampleSpecStep:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.ResampleSpecStep:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.ResampleSpecStep:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.ResampleSpecStep:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.ResampleSpecStep:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.ResampleSpecStep:resample.py:210 Resampling science data INFO stpipe.ResampleSpecStep:resample.py:210 Resampling science data DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (17, 1012) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (17, 1012) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (25, 1012) --> (17, 1012) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (25, 1012) --> (17, 1012) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_rnoise INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_rnoise DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1012) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (25, 1012) --> (17, 1012) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (25, 1012) --> (17, 1012) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_poisson INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_poisson DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1012) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (25, 1012) --> (17, 1012) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (25, 1012) --> (17, 1012) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_flat INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_flat DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1012) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (25, 1012) --> (17, 1012) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (25, 1012) --> (17, 1012) INFO stpipe.ResampleSpecStep:util.py:1060 Update S_REGION to POLYGON ICRS 53.122179170 -27.859536597 53.168807410 -27.859536597 53.168807410 -27.822232031 53.122179170 -27.822232031 INFO stpipe.ResampleSpecStep:util.py:1060 Update S_REGION to POLYGON ICRS 53.122179170 -27.859536597 53.168807410 -27.859536597 53.168807410 -27.822232031 53.122179170 -27.822232031 INFO stpipe.ResampleSpecStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.ResampleSpecStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.ResampleSpecStep:step.py:546 Step ResampleSpecStep done DEBUG stpipe.MasterBackgroundMosStep:step.py:862 Retrieving step PARS-EXTRACT1DSTEP parameters from CRDS DEBUG stpipe.MasterBackgroundMosStep:step.py:883 No PARS-EXTRACT1DSTEP reference files found. INFO stpipe.Extract1dStep:step.py:366 Extract1dStep instance created. INFO stpipe.Extract1dStep:step.py:430 Step Extract1dStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.Extract1dStep:step.py:434 Step Extract1dStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None} DEBUG stpipe.Extract1dStep:extract_1d_step.py:159 Input is a MultiSlitModel INFO stpipe.Extract1dStep:extract_1d_step.py:389 Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json INFO stpipe.Extract1dStep:extract_1d_step.py:397 Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits INFO stpipe.Extract1dStep:extract.py:2780 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Extract1dStep:extract.py:2780 Turning on source position correction for exp_type = NRS_MSASPEC DEBUG stpipe.Extract1dStep:extract.py:2805 Input is a MultiSlitModel. DEBUG stpipe.Extract1dStep:extract.py:2805 Input is a MultiSlitModel. INFO stpipe.Extract1dStep:extract.py:2813 Working on slit 6 INFO stpipe.Extract1dStep:extract.py:2813 Working on slit 6 DEBUG stpipe.Extract1dStep:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Extract1dStep:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> INFO stpipe.Extract1dStep:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:3614 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Extract1dStep:extract.py:440 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:440 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:441 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:441 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:442 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:442 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:444 initial xstop = 274 DEBUG stpipe.Extract1dStep:extract.py:444 initial xstop = 274 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:446 initial ystop = 15 DEBUG stpipe.Extract1dStep:extract.py:446 initial ystop = 15 DEBUG stpipe.Extract1dStep:extract.py:447 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:447 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:448 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:451 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:451 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:452 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:452 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:453 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:453 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:454 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:454 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:1655 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1655 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1723 Converting extraction limits to [[3.5], [11.5]] DEBUG stpipe.Extract1dStep:extract.py:1723 Converting extraction limits to [[3.5], [11.5]] INFO stpipe.Extract1dStep:extract.py:3433 Using extraction limits: xstart=0, xstop=274, ystart=4.0, ystop=11.0 INFO stpipe.Extract1dStep:extract.py:3433 Using extraction limits: xstart=0, xstop=274, ystart=4.0, ystop=11.0 INFO stpipe.Extract1dStep:extract.py:2813 Working on slit 5 INFO stpipe.Extract1dStep:extract.py:2813 Working on slit 5 DEBUG stpipe.Extract1dStep:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Extract1dStep:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> INFO stpipe.Extract1dStep:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:3614 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Extract1dStep:extract.py:440 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:440 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:441 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:441 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:442 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:442 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:444 initial xstop = 1278 DEBUG stpipe.Extract1dStep:extract.py:444 initial xstop = 1278 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:446 initial ystop = 16 DEBUG stpipe.Extract1dStep:extract.py:446 initial ystop = 16 DEBUG stpipe.Extract1dStep:extract.py:447 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:447 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:448 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:451 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:451 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:452 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:452 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:453 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:453 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:454 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:454 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:1655 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1655 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] DEBUG stpipe.Extract1dStep:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] INFO stpipe.Extract1dStep:extract.py:3433 Using extraction limits: xstart=0, xstop=1278, ystart=4.5, ystop=11.5 INFO stpipe.Extract1dStep:extract.py:3433 Using extraction limits: xstart=0, xstop=1278, ystart=4.5, ystop=11.5 INFO stpipe.Extract1dStep:extract.py:2813 Working on slit 10 INFO stpipe.Extract1dStep:extract.py:2813 Working on slit 10 DEBUG stpipe.Extract1dStep:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Extract1dStep:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> INFO stpipe.Extract1dStep:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:3614 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Extract1dStep:extract.py:440 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:440 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:441 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:441 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:442 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:442 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:444 initial xstop = 781 DEBUG stpipe.Extract1dStep:extract.py:444 initial xstop = 781 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:446 initial ystop = 16 DEBUG stpipe.Extract1dStep:extract.py:446 initial ystop = 16 DEBUG stpipe.Extract1dStep:extract.py:447 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:447 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:448 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:451 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:451 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:452 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:452 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:453 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:453 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:454 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:454 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:1655 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1655 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] DEBUG stpipe.Extract1dStep:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] INFO stpipe.Extract1dStep:extract.py:3433 Using extraction limits: xstart=0, xstop=781, ystart=4.5, ystop=11.5 INFO stpipe.Extract1dStep:extract.py:3433 Using extraction limits: xstart=0, xstop=781, ystart=4.5, ystop=11.5 INFO stpipe.Extract1dStep:extract.py:2813 Working on slit 16 INFO stpipe.Extract1dStep:extract.py:2813 Working on slit 16 DEBUG stpipe.Extract1dStep:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Extract1dStep:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> INFO stpipe.Extract1dStep:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:3614 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Extract1dStep:extract.py:440 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:440 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:441 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:441 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:442 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:442 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:444 initial xstop = 1011 DEBUG stpipe.Extract1dStep:extract.py:444 initial xstop = 1011 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:446 initial ystop = 16 DEBUG stpipe.Extract1dStep:extract.py:446 initial ystop = 16 DEBUG stpipe.Extract1dStep:extract.py:447 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:447 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:448 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:451 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:451 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:452 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:452 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:453 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:453 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:454 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:454 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:1655 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1655 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] DEBUG stpipe.Extract1dStep:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] INFO stpipe.Extract1dStep:extract.py:3433 Using extraction limits: xstart=0, xstop=1011, ystart=4.5, ystop=11.5 INFO stpipe.Extract1dStep:extract.py:3433 Using extraction limits: xstart=0, xstop=1011, ystart=4.5, ystop=11.5 DEBUG stpipe.Extract1dStep:extract.py:2952 Not copying from the INT_TIMES table because this is not a TSO exposure. DEBUG stpipe.Extract1dStep:extract.py:2952 Not copying from the INT_TIMES table because this is not a TSO exposure. INFO stpipe.Extract1dStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.Extract1dStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.Extract1dStep:step.py:546 Step Extract1dStep done INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:120 Combining 1D background spectra into master background INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:120 Combining 1D background spectra into master background DEBUG stpipe.MasterBackgroundMosStep:combine1d.py:564 Using exptime_key = exposure_time. DEBUG stpipe.MasterBackgroundMosStep:combine1d.py:564 Using exptime_key = exposure_time. INFO stpipe.MasterBackgroundMosStep:combine1d.py:529 Using exposure time as the weight. INFO stpipe.MasterBackgroundMosStep:combine1d.py:529 Using exposure time as the weight. INFO stpipe.MasterBackgroundMosStep:combine1d.py:204 Accumulating data from input spectrum 1 INFO stpipe.MasterBackgroundMosStep:combine1d.py:204 Accumulating data from input spectrum 1 INFO stpipe.MasterBackgroundMosStep:combine1d.py:204 Accumulating data from input spectrum 2 INFO stpipe.MasterBackgroundMosStep:combine1d.py:204 Accumulating data from input spectrum 2 INFO stpipe.MasterBackgroundMosStep:combine1d.py:204 Accumulating data from input spectrum 3 INFO stpipe.MasterBackgroundMosStep:combine1d.py:204 Accumulating data from input spectrum 3 INFO stpipe.MasterBackgroundMosStep:combine1d.py:204 Accumulating data from input spectrum 4 INFO stpipe.MasterBackgroundMosStep:combine1d.py:204 Accumulating data from input spectrum 4 WARNING stpipe.MasterBackgroundMosStep:combine1d.py:232 2 output pixel numbers were NaN WARNING stpipe.MasterBackgroundMosStep:combine1d.py:232 2 output pixel numbers were NaN WARNING stpipe.MasterBackgroundMosStep:combine1d.py:241 1 elements of output had no corresponding input data; WARNING stpipe.MasterBackgroundMosStep:combine1d.py:241 1 elements of output had no corresponding input data; WARNING stpipe.MasterBackgroundMosStep:combine1d.py:243 these elements will be omitted. WARNING stpipe.MasterBackgroundMosStep:combine1d.py:243 these elements will be omitted. INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:69 Interpolating 1D master background to all MOS 2D slitlets INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:69 Interpolating 1D master background to all MOS 2D slitlets INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 6 INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 6 INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 3 INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 3 INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 4 INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 4 INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 5 INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 5 INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 8 INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 8 INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 10 INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 10 INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 14 INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 14 INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 16 INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 16 INFO stpipe.MasterBackgroundMosStep.photom:step.py:430 Step photom running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundMosStep.photom:step.py:434 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'photom', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': 'EXTENDED'} DEBUG stpipe.MasterBackgroundMosStep.photom:photom_step.py:35 Input is MultiSlitModel INFO stpipe.MasterBackgroundMosStep.photom:photom_step.py:46 Using previously specified correction parameters. INFO stpipe.MasterBackgroundMosStep.photom:photom_step.py:55 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits INFO stpipe.MasterBackgroundMosStep.photom:photom_step.py:56 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits INFO stpipe.MasterBackgroundMosStep.photom:photom.py:144 Using instrument: NIRSPEC INFO stpipe.MasterBackgroundMosStep.photom:photom.py:144 Using instrument: NIRSPEC INFO stpipe.MasterBackgroundMosStep.photom:photom.py:145 detector: NRS1 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:145 detector: NRS1 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:146 exp_type: NRS_MSASPEC INFO stpipe.MasterBackgroundMosStep.photom:photom.py:146 exp_type: NRS_MSASPEC INFO stpipe.MasterBackgroundMosStep.photom:photom.py:148 filter: F170LP INFO stpipe.MasterBackgroundMosStep.photom:photom.py:148 filter: F170LP INFO stpipe.MasterBackgroundMosStep.photom:photom.py:152 grating: G235M INFO stpipe.MasterBackgroundMosStep.photom:photom.py:152 grating: G235M INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 6 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 6 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 3 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 3 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 4 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 4 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 5 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 5 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 8 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 8 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 10 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 14 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 14 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 16 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 16 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:step.py:546 Step photom done INFO stpipe.MasterBackgroundMosStep.barshadow:step.py:430 Step barshadow running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundMosStep.barshadow:step.py:434 Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'barshadow', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': 'EXTENDED'} DEBUG stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 6 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 6 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 5 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 5 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 14 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 14 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 16 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 16 INFO stpipe.MasterBackgroundMosStep.barshadow:step.py:546 Step barshadow done INFO stpipe.MasterBackgroundMosStep.pathloss:step.py:430 Step pathloss running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundMosStep.pathloss:step.py:434 Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'pathloss', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': 'EXTENDED'} INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:232 Input exposure type is NRS_MSASPEC INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:232 Input exposure type is NRS_MSASPEC INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 0 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 0 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 1 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 1 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 2 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 2 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 3 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 3 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 4 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 4 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 5 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 5 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 6 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 6 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 7 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 7 INFO stpipe.MasterBackgroundMosStep.pathloss:step.py:546 Step pathloss done INFO stpipe.MasterBackgroundMosStep.flat_field:step.py:430 Step flat_field running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundMosStep.flat_field:step.py:434 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'flat_field', 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': True} DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field_step.py:74 Input is MultiSlitModel of exposure type NRS_MSASPEC INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field_step.py:110 Using flat field from correction pars <MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits> DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 6 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 6 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 3 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 3 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 4 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 4 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 5 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 5 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 8 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 8 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 10 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 10 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 14 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 14 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 16 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 16 INFO stpipe.MasterBackgroundMosStep.flat_field:step.py:546 Step flat_field done INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:37 Subtracting master background from each MOS source slitlet INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:37 Subtracting master background from each MOS source slitlet INFO stpipe.MasterBackgroundMosStep:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.MasterBackgroundMosStep:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.MasterBackgroundMosStep:step.py:546 Step MasterBackgroundMosStep done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_masterbkg_corrpars | 69.52 | |
|
------------------------------Captured stderr call------------------------------ 2022-10-06 04:46:02,900 - stpipe.MasterBackgroundMosStep - INFO - MasterBackgroundMosStep instance created. 2022-10-06 04:46:02,901 - stpipe.MasterBackgroundMosStep.flat_field - INFO - FlatFieldStep instance created. 2022-10-06 04:46:02,902 - stpipe.MasterBackgroundMosStep.pathloss - INFO - PathLossStep instance created. 2022-10-06 04:46:02,903 - stpipe.MasterBackgroundMosStep.barshadow - INFO - BarShadowStep instance created. 2022-10-06 04:46:02,903 - stpipe.MasterBackgroundMosStep.photom - INFO - PhotomStep instance created. 2022-10-06 04:46:03,390 - stpipe.MasterBackgroundMosStep - INFO - Step MasterBackgroundMosStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2022-10-06 04:46:03,393 - stpipe.MasterBackgroundMosStep - INFO - Step MasterBackgroundMosStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}}} 2022-10-06 04:46:03,402 - stpipe.MasterBackgroundMosStep - INFO - Calculating master background 2022-10-06 04:46:03,883 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Step flat_field running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2022-10-06 04:46:03,884 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2022-10-06 04:46:13,031 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 6 2022-10-06 04:46:14,172 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 3 2022-10-06 04:46:17,346 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 4 2022-10-06 04:46:20,283 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 5 2022-10-06 04:46:25,003 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 8 2022-10-06 04:46:27,448 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 10 2022-10-06 04:46:30,504 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 14 2022-10-06 04:46:34,313 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 16 2022-10-06 04:46:38,950 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Step flat_field done 2022-10-06 04:46:39,351 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Step pathloss running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2022-10-06 04:46:39,352 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'EXTENDED'} 2022-10-06 04:46:39,388 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits 2022-10-06 04:46:39,456 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Input exposure type is NRS_MSASPEC 2022-10-06 04:46:41,390 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 0 2022-10-06 04:46:41,412 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 1 2022-10-06 04:46:41,433 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 2 2022-10-06 04:46:41,456 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 3 2022-10-06 04:46:41,480 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 4 2022-10-06 04:46:41,502 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 5 2022-10-06 04:46:41,523 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 6 2022-10-06 04:46:41,547 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 7 2022-10-06 04:46:41,574 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Step pathloss done 2022-10-06 04:46:41,995 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Step barshadow running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2022-10-06 04:46:41,996 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'EXTENDED'} 2022-10-06 04:46:42,032 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits 2022-10-06 04:46:43,614 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 6 2022-10-06 04:46:43,664 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 3 2022-10-06 04:46:43,761 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 4 2022-10-06 04:46:43,850 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 5 2022-10-06 04:46:44,025 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 8 2022-10-06 04:46:44,128 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 10 2022-10-06 04:46:44,215 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 14 2022-10-06 04:46:44,321 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 16 2022-10-06 04:46:44,435 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Step barshadow done 2022-10-06 04:46:44,950 - stpipe.MasterBackgroundMosStep.photom - INFO - Step photom running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2022-10-06 04:46:44,952 - stpipe.MasterBackgroundMosStep.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'EXTENDED'} 2022-10-06 04:46:45,014 - stpipe.MasterBackgroundMosStep.photom - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits 2022-10-06 04:46:45,014 - stpipe.MasterBackgroundMosStep.photom - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits 2022-10-06 04:46:46,572 - stpipe.MasterBackgroundMosStep.photom - INFO - Using instrument: NIRSPEC 2022-10-06 04:46:46,572 - stpipe.MasterBackgroundMosStep.photom - INFO - detector: NRS1 2022-10-06 04:46:46,572 - stpipe.MasterBackgroundMosStep.photom - INFO - exp_type: NRS_MSASPEC 2022-10-06 04:46:46,572 - stpipe.MasterBackgroundMosStep.photom - INFO - filter: F170LP 2022-10-06 04:46:46,572 - stpipe.MasterBackgroundMosStep.photom - INFO - grating: G235M 2022-10-06 04:46:46,656 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 6 2022-10-06 04:46:46,656 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:46:46,665 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 3 2022-10-06 04:46:46,666 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:46:46,675 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 4 2022-10-06 04:46:46,676 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:46:46,685 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 5 2022-10-06 04:46:46,685 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:46:46,695 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 8 2022-10-06 04:46:46,695 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:46:46,706 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 10 2022-10-06 04:46:46,706 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:46:46,716 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 14 2022-10-06 04:46:46,716 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:46:46,726 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 16 2022-10-06 04:46:46,726 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:46:46,741 - stpipe.MasterBackgroundMosStep.photom - INFO - Step photom done 2022-10-06 04:46:46,742 - stpipe.MasterBackgroundMosStep - INFO - Creating MOS master background from background slitlets 2022-10-06 04:46:46,760 - stpipe.MasterBackgroundMosStep - INFO - Using background slitlet background_6 2022-10-06 04:46:46,761 - stpipe.MasterBackgroundMosStep - INFO - Using background slitlet background_5 2022-10-06 04:46:46,761 - stpipe.MasterBackgroundMosStep - INFO - Using background slitlet background_10 2022-10-06 04:46:46,761 - stpipe.MasterBackgroundMosStep - INFO - Using background slitlet background_16 2022-10-06 04:46:47,467 - stpipe.MasterBackgroundMosStep - INFO - Applying resampling and 1D extraction to background slits 2022-10-06 04:46:47,485 - stpipe.ResampleSpecStep - INFO - ResampleSpecStep instance created. 2022-10-06 04:46:47,871 - stpipe.ResampleSpecStep - INFO - Step ResampleSpecStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2022-10-06 04:46:47,873 - stpipe.ResampleSpecStep - INFO - Step ResampleSpecStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True} 2022-10-06 04:46:47,908 - stpipe.ResampleSpecStep - INFO - No DRIZPARS reffile 2022-10-06 04:46:47,909 - stpipe.ResampleSpecStep - INFO - using: pixfrac=1.0 2022-10-06 04:46:47,909 - stpipe.ResampleSpecStep - INFO - using: kernel='square' 2022-10-06 04:46:47,909 - stpipe.ResampleSpecStep - INFO - using: fillval='INDEF' 2022-10-06 04:46:47,909 - stpipe.ResampleSpecStep - INFO - using: wht_type='ivm' 2022-10-06 04:46:47,909 - stpipe.ResampleSpecStep - INFO - using: pscale_ratio=1.0 2022-10-06 04:46:47,909 - stpipe.ResampleSpecStep - INFO - Reorganizing data from exposure nrs_mos_with_bkgslits_srctype.fits 2022-10-06 04:46:48,800 - stpipe.ResampleSpecStep - INFO - Driz parameter kernal: square 2022-10-06 04:46:48,800 - stpipe.ResampleSpecStep - INFO - Driz parameter pixfrac: 1.0 2022-10-06 04:46:48,801 - stpipe.ResampleSpecStep - INFO - Driz parameter fillval: INDEF 2022-10-06 04:46:48,801 - stpipe.ResampleSpecStep - INFO - Driz parameter weight_type: ivm 2022-10-06 04:46:48,971 - stpipe.ResampleSpecStep - INFO - Resampling science data 2022-10-06 04:46:49,008 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 275) --> (16, 275) 2022-10-06 04:46:49,009 - stpipe.ResampleSpecStep - INFO - Resampling var_rnoise 2022-10-06 04:46:49,048 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 275) --> (16, 275) 2022-10-06 04:46:49,051 - stpipe.ResampleSpecStep - INFO - Resampling var_poisson 2022-10-06 04:46:49,087 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 275) --> (16, 275) 2022-10-06 04:46:49,090 - stpipe.ResampleSpecStep - INFO - Resampling var_flat 2022-10-06 04:46:49,127 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 275) --> (16, 275) 2022-10-06 04:46:49,154 - stpipe.ResampleSpecStep - INFO - Update S_REGION to POLYGON ICRS 53.158247003 -27.801208023 53.171031170 -27.801208023 53.171031170 -27.791101145 53.158247003 -27.791101145 2022-10-06 04:46:49,481 - stpipe.ResampleSpecStep - INFO - Driz parameter kernal: square 2022-10-06 04:46:49,481 - stpipe.ResampleSpecStep - INFO - Driz parameter pixfrac: 1.0 2022-10-06 04:46:49,481 - stpipe.ResampleSpecStep - INFO - Driz parameter fillval: INDEF 2022-10-06 04:46:49,481 - stpipe.ResampleSpecStep - INFO - Driz parameter weight_type: ivm 2022-10-06 04:46:49,673 - stpipe.ResampleSpecStep - INFO - Resampling science data 2022-10-06 04:46:49,742 - stpipe.ResampleSpecStep - INFO - Drizzling (28, 1279) --> (17, 1279) 2022-10-06 04:46:49,746 - stpipe.ResampleSpecStep - INFO - Resampling var_rnoise 2022-10-06 04:46:49,820 - stpipe.ResampleSpecStep - INFO - Drizzling (28, 1279) --> (17, 1279) 2022-10-06 04:46:49,828 - stpipe.ResampleSpecStep - INFO - Resampling var_poisson 2022-10-06 04:46:49,898 - stpipe.ResampleSpecStep - INFO - Drizzling (28, 1279) --> (17, 1279) 2022-10-06 04:46:49,904 - stpipe.ResampleSpecStep - INFO - Resampling var_flat 2022-10-06 04:46:49,973 - stpipe.ResampleSpecStep - INFO - Drizzling (28, 1279) --> (17, 1279) 2022-10-06 04:46:50,018 - stpipe.ResampleSpecStep - INFO - Update S_REGION to POLYGON ICRS 53.098754983 -27.869721829 53.157715728 -27.869721829 53.157715728 -27.822405918 53.098754983 -27.822405918 2022-10-06 04:46:50,316 - stpipe.ResampleSpecStep - INFO - Driz parameter kernal: square 2022-10-06 04:46:50,316 - stpipe.ResampleSpecStep - INFO - Driz parameter pixfrac: 1.0 2022-10-06 04:46:50,316 - stpipe.ResampleSpecStep - INFO - Driz parameter fillval: INDEF 2022-10-06 04:46:50,316 - stpipe.ResampleSpecStep - INFO - Driz parameter weight_type: ivm 2022-10-06 04:46:50,499 - stpipe.ResampleSpecStep - INFO - Resampling science data 2022-10-06 04:46:50,552 - stpipe.ResampleSpecStep - INFO - Drizzling (23, 782) --> (17, 782) 2022-10-06 04:46:50,554 - stpipe.ResampleSpecStep - INFO - Resampling var_rnoise 2022-10-06 04:46:50,605 - stpipe.ResampleSpecStep - INFO - Drizzling (23, 782) --> (17, 782) 2022-10-06 04:46:50,610 - stpipe.ResampleSpecStep - INFO - Resampling var_poisson 2022-10-06 04:46:50,660 - stpipe.ResampleSpecStep - INFO - Drizzling (23, 782) --> (17, 782) 2022-10-06 04:46:50,665 - stpipe.ResampleSpecStep - INFO - Resampling var_flat 2022-10-06 04:46:50,713 - stpipe.ResampleSpecStep - INFO - Drizzling (23, 782) --> (17, 782) 2022-10-06 04:46:50,749 - stpipe.ResampleSpecStep - INFO - Update S_REGION to POLYGON ICRS 53.125377232 -27.832055121 53.161276327 -27.832055121 53.161276327 -27.803487942 53.125377232 -27.803487942 2022-10-06 04:46:51,057 - stpipe.ResampleSpecStep - INFO - Driz parameter kernal: square 2022-10-06 04:46:51,057 - stpipe.ResampleSpecStep - INFO - Driz parameter pixfrac: 1.0 2022-10-06 04:46:51,058 - stpipe.ResampleSpecStep - INFO - Driz parameter fillval: INDEF 2022-10-06 04:46:51,058 - stpipe.ResampleSpecStep - INFO - Driz parameter weight_type: ivm 2022-10-06 04:46:51,710 - stpipe.ResampleSpecStep - INFO - Resampling science data 2022-10-06 04:46:51,763 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 1012) --> (17, 1012) 2022-10-06 04:46:51,767 - stpipe.ResampleSpecStep - INFO - Resampling var_rnoise 2022-10-06 04:46:51,819 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 1012) --> (17, 1012) 2022-10-06 04:46:51,824 - stpipe.ResampleSpecStep - INFO - Resampling var_poisson 2022-10-06 04:46:51,877 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 1012) --> (17, 1012) 2022-10-06 04:46:51,882 - stpipe.ResampleSpecStep - INFO - Resampling var_flat 2022-10-06 04:46:51,933 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 1012) --> (17, 1012) 2022-10-06 04:46:51,968 - stpipe.ResampleSpecStep - INFO - Update S_REGION to POLYGON ICRS 53.122179170 -27.859536597 53.168807410 -27.859536597 53.168807410 -27.822232031 53.122179170 -27.822232031 2022-10-06 04:46:52,019 - stpipe.ResampleSpecStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:46:52,019 - stpipe.ResampleSpecStep - INFO - Step ResampleSpecStep done 2022-10-06 04:46:52,036 - stpipe.Extract1dStep - INFO - Extract1dStep instance created. 2022-10-06 04:46:52,459 - stpipe.Extract1dStep - INFO - Step Extract1dStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2022-10-06 04:46:52,460 - stpipe.Extract1dStep - INFO - Step Extract1dStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None} 2022-10-06 04:46:52,486 - stpipe.Extract1dStep - INFO - Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json 2022-10-06 04:46:52,504 - stpipe.Extract1dStep - INFO - Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits 2022-10-06 04:46:52,549 - stpipe.Extract1dStep - INFO - Turning on source position correction for exp_type = NRS_MSASPEC 2022-10-06 04:46:52,549 - stpipe.Extract1dStep - INFO - Working on slit 6 2022-10-06 04:46:52,549 - stpipe.Extract1dStep - INFO - Setting use_source_posn to False for source type EXTENDED 2022-10-06 04:46:52,559 - stpipe.Extract1dStep - INFO - Using extraction limits: xstart=0, xstop=274, ystart=4.0, ystop=11.0 2022-10-06 04:46:52,659 - stpipe.Extract1dStep - INFO - Working on slit 5 2022-10-06 04:46:52,659 - stpipe.Extract1dStep - INFO - Setting use_source_posn to False for source type EXTENDED 2022-10-06 04:46:52,677 - stpipe.Extract1dStep - INFO - Using extraction limits: xstart=0, xstop=1278, ystart=4.5, ystop=11.5 2022-10-06 04:46:52,914 - stpipe.Extract1dStep - INFO - Working on slit 10 2022-10-06 04:46:52,915 - stpipe.Extract1dStep - INFO - Setting use_source_posn to False for source type EXTENDED 2022-10-06 04:46:52,930 - stpipe.Extract1dStep - INFO - Using extraction limits: xstart=0, xstop=781, ystart=4.5, ystop=11.5 2022-10-06 04:46:53,103 - stpipe.Extract1dStep - INFO - Working on slit 16 2022-10-06 04:46:53,103 - stpipe.Extract1dStep - INFO - Setting use_source_posn to False for source type EXTENDED 2022-10-06 04:46:53,119 - stpipe.Extract1dStep - INFO - Using extraction limits: xstart=0, xstop=1011, ystart=4.5, ystop=11.5 2022-10-06 04:46:53,349 - stpipe.Extract1dStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:46:53,349 - stpipe.Extract1dStep - INFO - Step Extract1dStep done 2022-10-06 04:46:53,349 - stpipe.MasterBackgroundMosStep - INFO - Combining 1D background spectra into master background 2022-10-06 04:46:53,349 - stpipe.MasterBackgroundMosStep - INFO - Using exposure time as the weight. 2022-10-06 04:46:53,420 - stpipe.MasterBackgroundMosStep - INFO - Accumulating data from input spectrum 1 2022-10-06 04:46:53,422 - stpipe.MasterBackgroundMosStep - INFO - Accumulating data from input spectrum 2 2022-10-06 04:46:53,428 - stpipe.MasterBackgroundMosStep - INFO - Accumulating data from input spectrum 3 2022-10-06 04:46:53,431 - stpipe.MasterBackgroundMosStep - INFO - Accumulating data from input spectrum 4 2022-10-06 04:46:53,436 - stpipe.MasterBackgroundMosStep - WARNING - 2 output pixel numbers were NaN 2022-10-06 04:46:53,436 - stpipe.MasterBackgroundMosStep - WARNING - 1 elements of output had no corresponding input data; 2022-10-06 04:46:53,436 - stpipe.MasterBackgroundMosStep - WARNING - these elements will be omitted. 2022-10-06 04:46:53,496 - stpipe.MasterBackgroundMosStep - INFO - Interpolating 1D master background to all MOS 2D slitlets 2022-10-06 04:46:55,008 - stpipe.MasterBackgroundMosStep - INFO - Expanding background for slit 6 2022-10-06 04:46:55,009 - stpipe.MasterBackgroundMosStep - INFO - Expanding background for slit 3 2022-10-06 04:46:55,010 - stpipe.MasterBackgroundMosStep - INFO - Expanding background for slit 4 2022-10-06 04:46:55,010 - stpipe.MasterBackgroundMosStep - INFO - Expanding background for slit 5 2022-10-06 04:46:55,011 - stpipe.MasterBackgroundMosStep - INFO - Expanding background for slit 8 2022-10-06 04:46:55,011 - stpipe.MasterBackgroundMosStep - INFO - Expanding background for slit 10 2022-10-06 04:46:55,012 - stpipe.MasterBackgroundMosStep - INFO - Expanding background for slit 14 2022-10-06 04:46:55,013 - stpipe.MasterBackgroundMosStep - INFO - Expanding background for slit 16 2022-10-06 04:46:55,546 - stpipe.MasterBackgroundMosStep.photom - INFO - Step photom running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2022-10-06 04:46:55,548 - stpipe.MasterBackgroundMosStep.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'photom', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': 'EXTENDED'} 2022-10-06 04:46:55,556 - stpipe.MasterBackgroundMosStep.photom - INFO - Using previously specified correction parameters. 2022-10-06 04:46:55,556 - stpipe.MasterBackgroundMosStep.photom - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits 2022-10-06 04:46:55,556 - stpipe.MasterBackgroundMosStep.photom - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits 2022-10-06 04:46:57,101 - stpipe.MasterBackgroundMosStep.photom - INFO - Using instrument: NIRSPEC 2022-10-06 04:46:57,101 - stpipe.MasterBackgroundMosStep.photom - INFO - detector: NRS1 2022-10-06 04:46:57,101 - stpipe.MasterBackgroundMosStep.photom - INFO - exp_type: NRS_MSASPEC 2022-10-06 04:46:57,101 - stpipe.MasterBackgroundMosStep.photom - INFO - filter: F170LP 2022-10-06 04:46:57,101 - stpipe.MasterBackgroundMosStep.photom - INFO - grating: G235M 2022-10-06 04:46:57,192 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 6 2022-10-06 04:46:57,192 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:46:57,202 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 3 2022-10-06 04:46:57,202 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:46:57,212 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 4 2022-10-06 04:46:57,212 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:46:57,221 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 5 2022-10-06 04:46:57,222 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:46:57,232 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 8 2022-10-06 04:46:57,232 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:46:57,242 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 10 2022-10-06 04:46:57,243 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:46:57,253 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 14 2022-10-06 04:46:57,254 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:46:57,264 - stpipe.MasterBackgroundMosStep.photom - INFO - Working on slit 16 2022-10-06 04:46:57,265 - stpipe.MasterBackgroundMosStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:46:57,278 - stpipe.MasterBackgroundMosStep.photom - INFO - Step photom done 2022-10-06 04:46:57,847 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Step barshadow running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2022-10-06 04:46:57,849 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'barshadow', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': 'EXTENDED'} 2022-10-06 04:46:59,381 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 6 2022-10-06 04:46:59,387 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 3 2022-10-06 04:46:59,394 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 4 2022-10-06 04:46:59,400 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 5 2022-10-06 04:46:59,407 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 8 2022-10-06 04:46:59,413 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 10 2022-10-06 04:46:59,419 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 14 2022-10-06 04:46:59,425 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Working on slitlet 16 2022-10-06 04:46:59,434 - stpipe.MasterBackgroundMosStep.barshadow - INFO - Step barshadow done 2022-10-06 04:46:59,947 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Step pathloss running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2022-10-06 04:46:59,948 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'pathloss', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': 'EXTENDED'} 2022-10-06 04:46:59,956 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Input exposure type is NRS_MSASPEC 2022-10-06 04:47:01,510 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 0 2022-10-06 04:47:01,518 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 1 2022-10-06 04:47:01,525 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 2 2022-10-06 04:47:01,533 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 3 2022-10-06 04:47:01,540 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 4 2022-10-06 04:47:01,548 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 5 2022-10-06 04:47:01,555 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 6 2022-10-06 04:47:01,563 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Working on slit 7 2022-10-06 04:47:01,572 - stpipe.MasterBackgroundMosStep.pathloss - INFO - Step pathloss done 2022-10-06 04:47:02,184 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Step flat_field running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2022-10-06 04:47:02,186 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'flat_field', 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': True} 2022-10-06 04:47:02,194 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Using flat field from correction pars <MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits> 2022-10-06 04:47:03,781 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 6 2022-10-06 04:47:03,787 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 3 2022-10-06 04:47:03,793 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 4 2022-10-06 04:47:03,798 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 5 2022-10-06 04:47:03,804 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 8 2022-10-06 04:47:03,810 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 10 2022-10-06 04:47:03,816 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 14 2022-10-06 04:47:03,822 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Working on slit 16 2022-10-06 04:47:03,832 - stpipe.MasterBackgroundMosStep.flat_field - INFO - Step flat_field done 2022-10-06 04:47:03,838 - stpipe.MasterBackgroundMosStep - INFO - Subtracting master background from each MOS source slitlet 2022-10-06 04:47:06,202 - stpipe.MasterBackgroundMosStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:47:06,202 - stpipe.MasterBackgroundMosStep - INFO - Step MasterBackgroundMosStep done 2022-10-06 04:47:06,734 - stpipe.MasterBackgroundMosStep - INFO - Step MasterBackgroundMosStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2022-10-06 04:47:06,737 - stpipe.MasterBackgroundMosStep - INFO - Step MasterBackgroundMosStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'masterbackgroundmosstep', 'search_output_file': True, 'input_dir': '', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}}} 2022-10-06 04:47:06,745 - stpipe.MasterBackgroundMosStep - INFO - Using pre-calculated correction parameters. 2022-10-06 04:47:06,745 - stpipe.MasterBackgroundMosStep - INFO - Subtracting master background from each MOS source slitlet 2022-10-06 04:47:08,226 - stpipe.MasterBackgroundMosStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:47:08,227 - stpipe.MasterBackgroundMosStep - INFO - Step MasterBackgroundMosStep done -------------------------------Captured log call-------------------------------- INFO stpipe.MasterBackgroundMosStep:step.py:366 MasterBackgroundMosStep instance created. INFO stpipe.MasterBackgroundMosStep.flat_field:step.py:366 FlatFieldStep instance created. INFO stpipe.MasterBackgroundMosStep.pathloss:step.py:366 PathLossStep instance created. INFO stpipe.MasterBackgroundMosStep.barshadow:step.py:366 BarShadowStep instance created. INFO stpipe.MasterBackgroundMosStep.photom:step.py:366 PhotomStep instance created. INFO stpipe.MasterBackgroundMosStep:step.py:430 Step MasterBackgroundMosStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundMosStep:step.py:434 Step MasterBackgroundMosStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}}} INFO stpipe.MasterBackgroundMosStep:master_background_mos_step.py:132 Calculating master background INFO stpipe.MasterBackgroundMosStep.flat_field:step.py:430 Step flat_field running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundMosStep.flat_field:step.py:434 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field_step.py:74 Input is MultiSlitModel of exposure type NRS_MSASPEC DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field_step.py:201 No reference found for type FLAT DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field_step.py:199 Using FFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field_step.py:199 Using SFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field_step.py:199 Using DFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 6 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 6 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 2783 out of 6875 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 2783 out of 6875 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:2010 1 flat-field values <= 0 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:2010 1 flat-field values <= 0 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 3 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 3 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 6707 out of 19366 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 6707 out of 19366 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:2010 14 flat-field values <= 0 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:2010 14 flat-field values <= 0 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 4 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 4 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 6252 out of 17963 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 6252 out of 17963 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:2010 14 flat-field values <= 0 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:2010 14 flat-field values <= 0 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 5 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 5 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 16839 out of 35812 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 16839 out of 35812 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:2010 18 flat-field values <= 0 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:2010 18 flat-field values <= 0 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 8 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 8 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 5129 out of 14743 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 5129 out of 14743 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:2010 7 flat-field values <= 0 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:2010 7 flat-field values <= 0 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 10 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 10 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 6362 out of 17986 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 6362 out of 17986 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:2010 8 flat-field values <= 0 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:2010 8 flat-field values <= 0 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 14 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 14 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 9788 out of 24450 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 9788 out of 24450 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:2010 7 flat-field values <= 0 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:2010 7 flat-field values <= 0 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 16 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 16 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 10317 out of 25300 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 10317 out of 25300 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:2010 16 flat-field values <= 0 DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:2010 16 flat-field values <= 0 INFO stpipe.MasterBackgroundMosStep.flat_field:step.py:546 Step flat_field done INFO stpipe.MasterBackgroundMosStep.pathloss:step.py:430 Step pathloss running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundMosStep.pathloss:step.py:434 Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'EXTENDED'} INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss_step.py:38 Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:232 Input exposure type is NRS_MSASPEC INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:232 Input exposure type is NRS_MSASPEC INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 0 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 0 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 1 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 1 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 2 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 2 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 3 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 3 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 4 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 4 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 5 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 5 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 6 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 6 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 7 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 7 INFO stpipe.MasterBackgroundMosStep.pathloss:step.py:546 Step pathloss done INFO stpipe.MasterBackgroundMosStep.barshadow:step.py:430 Step barshadow running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundMosStep.barshadow:step.py:434 Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'EXTENDED'} INFO stpipe.MasterBackgroundMosStep.barshadow:barshadow_step.py:58 Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits DEBUG stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 6 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 6 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 5 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 5 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 14 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 14 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 16 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 16 INFO stpipe.MasterBackgroundMosStep.barshadow:step.py:546 Step barshadow done INFO stpipe.MasterBackgroundMosStep.photom:step.py:430 Step photom running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundMosStep.photom:step.py:434 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'EXTENDED'} DEBUG stpipe.MasterBackgroundMosStep.photom:photom_step.py:35 Input is MultiSlitModel INFO stpipe.MasterBackgroundMosStep.photom:photom_step.py:55 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits INFO stpipe.MasterBackgroundMosStep.photom:photom_step.py:56 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits INFO stpipe.MasterBackgroundMosStep.photom:photom.py:144 Using instrument: NIRSPEC INFO stpipe.MasterBackgroundMosStep.photom:photom.py:144 Using instrument: NIRSPEC INFO stpipe.MasterBackgroundMosStep.photom:photom.py:145 detector: NRS1 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:145 detector: NRS1 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:146 exp_type: NRS_MSASPEC INFO stpipe.MasterBackgroundMosStep.photom:photom.py:146 exp_type: NRS_MSASPEC INFO stpipe.MasterBackgroundMosStep.photom:photom.py:148 filter: F170LP INFO stpipe.MasterBackgroundMosStep.photom:photom.py:148 filter: F170LP INFO stpipe.MasterBackgroundMosStep.photom:photom.py:152 grating: G235M INFO stpipe.MasterBackgroundMosStep.photom:photom.py:152 grating: G235M INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 6 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 6 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 3 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 3 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 4 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 4 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 5 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 5 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 8 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 8 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 10 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 14 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 14 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 16 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 16 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:step.py:546 Step photom done DEBUG stpipe.MasterBackgroundMosStep:master_background_mos_step.py:246 Calculating 1D master background INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:97 Creating MOS master background from background slitlets INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:97 Creating MOS master background from background slitlets INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:105 Using background slitlet background_6 INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:105 Using background slitlet background_6 INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:105 Using background slitlet background_5 INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:105 Using background slitlet background_5 INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:105 Using background slitlet background_10 INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:105 Using background slitlet background_10 INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:105 Using background slitlet background_16 INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:105 Using background slitlet background_16 INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:115 Applying resampling and 1D extraction to background slits INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:115 Applying resampling and 1D extraction to background slits DEBUG stpipe.MasterBackgroundMosStep:step.py:862 Retrieving step PARS-RESAMPLESPECSTEP parameters from CRDS DEBUG stpipe.MasterBackgroundMosStep:step.py:883 No PARS-RESAMPLESPECSTEP reference files found. INFO stpipe.ResampleSpecStep:step.py:366 ResampleSpecStep instance created. INFO stpipe.ResampleSpecStep:step.py:430 Step ResampleSpecStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.ResampleSpecStep:step.py:434 Step ResampleSpecStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True} INFO stpipe.ResampleSpecStep:resample_spec_step.py:60 No DRIZPARS reffile INFO stpipe.ResampleSpecStep:resample_step.py:257 using: pixfrac=1.0 INFO stpipe.ResampleSpecStep:resample_step.py:257 using: pixfrac=1.0 INFO stpipe.ResampleSpecStep:resample_step.py:257 using: kernel='square' INFO stpipe.ResampleSpecStep:resample_step.py:257 using: kernel='square' INFO stpipe.ResampleSpecStep:resample_step.py:257 using: fillval='INDEF' INFO stpipe.ResampleSpecStep:resample_step.py:257 using: fillval='INDEF' INFO stpipe.ResampleSpecStep:resample_step.py:257 using: wht_type='ivm' INFO stpipe.ResampleSpecStep:resample_step.py:257 using: wht_type='ivm' INFO stpipe.ResampleSpecStep:resample_step.py:257 using: pscale_ratio=1.0 INFO stpipe.ResampleSpecStep:resample_step.py:257 using: pscale_ratio=1.0 INFO stpipe.ResampleSpecStep:exp_to_source.py:37 Reorganizing data from exposure nrs_mos_with_bkgslits_srctype.fits INFO stpipe.ResampleSpecStep:exp_to_source.py:37 Reorganizing data from exposure nrs_mos_with_bkgslits_srctype.fits DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 37 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 37 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 36 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 36 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 38 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 38 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 39 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 39 INFO stpipe.ResampleSpecStep:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.ResampleSpecStep:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.ResampleSpecStep:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.ResampleSpecStep:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.ResampleSpecStep:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.ResampleSpecStep:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.ResampleSpecStep:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.ResampleSpecStep:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.ResampleSpecStep:resample.py:210 Resampling science data INFO stpipe.ResampleSpecStep:resample.py:210 Resampling science data DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (16, 275) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (16, 275) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (25, 275) --> (16, 275) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (25, 275) --> (16, 275) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_rnoise INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_rnoise DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (16, 275) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (16, 275) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (25, 275) --> (16, 275) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (25, 275) --> (16, 275) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_poisson INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_poisson DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (16, 275) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (16, 275) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (25, 275) --> (16, 275) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (25, 275) --> (16, 275) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_flat INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_flat DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (16, 275) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (16, 275) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (25, 275) --> (16, 275) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (25, 275) --> (16, 275) INFO stpipe.ResampleSpecStep:util.py:1060 Update S_REGION to POLYGON ICRS 53.158247003 -27.801208023 53.171031170 -27.801208023 53.171031170 -27.791101145 53.158247003 -27.791101145 INFO stpipe.ResampleSpecStep:util.py:1060 Update S_REGION to POLYGON ICRS 53.158247003 -27.801208023 53.171031170 -27.801208023 53.171031170 -27.791101145 53.158247003 -27.791101145 INFO stpipe.ResampleSpecStep:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.ResampleSpecStep:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.ResampleSpecStep:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.ResampleSpecStep:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.ResampleSpecStep:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.ResampleSpecStep:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.ResampleSpecStep:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.ResampleSpecStep:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.ResampleSpecStep:resample.py:210 Resampling science data INFO stpipe.ResampleSpecStep:resample.py:210 Resampling science data DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (17, 1279) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (17, 1279) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (28, 1279) --> (17, 1279) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (28, 1279) --> (17, 1279) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_rnoise INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_rnoise DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1279) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (28, 1279) --> (17, 1279) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (28, 1279) --> (17, 1279) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_poisson INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_poisson DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1279) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (28, 1279) --> (17, 1279) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (28, 1279) --> (17, 1279) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_flat INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_flat DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1279) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (28, 1279) --> (17, 1279) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (28, 1279) --> (17, 1279) INFO stpipe.ResampleSpecStep:util.py:1060 Update S_REGION to POLYGON ICRS 53.098754983 -27.869721829 53.157715728 -27.869721829 53.157715728 -27.822405918 53.098754983 -27.822405918 INFO stpipe.ResampleSpecStep:util.py:1060 Update S_REGION to POLYGON ICRS 53.098754983 -27.869721829 53.157715728 -27.869721829 53.157715728 -27.822405918 53.098754983 -27.822405918 INFO stpipe.ResampleSpecStep:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.ResampleSpecStep:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.ResampleSpecStep:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.ResampleSpecStep:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.ResampleSpecStep:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.ResampleSpecStep:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.ResampleSpecStep:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.ResampleSpecStep:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.ResampleSpecStep:resample.py:210 Resampling science data INFO stpipe.ResampleSpecStep:resample.py:210 Resampling science data DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (17, 782) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (17, 782) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (23, 782) --> (17, 782) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (23, 782) --> (17, 782) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_rnoise INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_rnoise DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 782) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 782) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (23, 782) --> (17, 782) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (23, 782) --> (17, 782) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_poisson INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_poisson DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 782) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 782) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (23, 782) --> (17, 782) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (23, 782) --> (17, 782) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_flat INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_flat DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 782) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 782) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (23, 782) --> (17, 782) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (23, 782) --> (17, 782) INFO stpipe.ResampleSpecStep:util.py:1060 Update S_REGION to POLYGON ICRS 53.125377232 -27.832055121 53.161276327 -27.832055121 53.161276327 -27.803487942 53.125377232 -27.803487942 INFO stpipe.ResampleSpecStep:util.py:1060 Update S_REGION to POLYGON ICRS 53.125377232 -27.832055121 53.161276327 -27.832055121 53.161276327 -27.803487942 53.125377232 -27.803487942 INFO stpipe.ResampleSpecStep:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.ResampleSpecStep:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.ResampleSpecStep:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.ResampleSpecStep:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.ResampleSpecStep:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.ResampleSpecStep:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.ResampleSpecStep:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.ResampleSpecStep:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.ResampleSpecStep:resample.py:210 Resampling science data INFO stpipe.ResampleSpecStep:resample.py:210 Resampling science data DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (17, 1012) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (17, 1012) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (25, 1012) --> (17, 1012) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (25, 1012) --> (17, 1012) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_rnoise INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_rnoise DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1012) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (25, 1012) --> (17, 1012) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (25, 1012) --> (17, 1012) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_poisson INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_poisson DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1012) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (25, 1012) --> (17, 1012) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (25, 1012) --> (17, 1012) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_flat INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_flat DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1012) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (25, 1012) --> (17, 1012) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (25, 1012) --> (17, 1012) INFO stpipe.ResampleSpecStep:util.py:1060 Update S_REGION to POLYGON ICRS 53.122179170 -27.859536597 53.168807410 -27.859536597 53.168807410 -27.822232031 53.122179170 -27.822232031 INFO stpipe.ResampleSpecStep:util.py:1060 Update S_REGION to POLYGON ICRS 53.122179170 -27.859536597 53.168807410 -27.859536597 53.168807410 -27.822232031 53.122179170 -27.822232031 INFO stpipe.ResampleSpecStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.ResampleSpecStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.ResampleSpecStep:step.py:546 Step ResampleSpecStep done DEBUG stpipe.MasterBackgroundMosStep:step.py:862 Retrieving step PARS-EXTRACT1DSTEP parameters from CRDS DEBUG stpipe.MasterBackgroundMosStep:step.py:883 No PARS-EXTRACT1DSTEP reference files found. INFO stpipe.Extract1dStep:step.py:366 Extract1dStep instance created. INFO stpipe.Extract1dStep:step.py:430 Step Extract1dStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.Extract1dStep:step.py:434 Step Extract1dStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None} DEBUG stpipe.Extract1dStep:extract_1d_step.py:159 Input is a MultiSlitModel INFO stpipe.Extract1dStep:extract_1d_step.py:389 Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json INFO stpipe.Extract1dStep:extract_1d_step.py:397 Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits INFO stpipe.Extract1dStep:extract.py:2780 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Extract1dStep:extract.py:2780 Turning on source position correction for exp_type = NRS_MSASPEC DEBUG stpipe.Extract1dStep:extract.py:2805 Input is a MultiSlitModel. DEBUG stpipe.Extract1dStep:extract.py:2805 Input is a MultiSlitModel. INFO stpipe.Extract1dStep:extract.py:2813 Working on slit 6 INFO stpipe.Extract1dStep:extract.py:2813 Working on slit 6 DEBUG stpipe.Extract1dStep:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Extract1dStep:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> INFO stpipe.Extract1dStep:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:3614 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Extract1dStep:extract.py:440 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:440 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:441 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:441 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:442 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:442 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:444 initial xstop = 274 DEBUG stpipe.Extract1dStep:extract.py:444 initial xstop = 274 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:446 initial ystop = 15 DEBUG stpipe.Extract1dStep:extract.py:446 initial ystop = 15 DEBUG stpipe.Extract1dStep:extract.py:447 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:447 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:448 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:451 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:451 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:452 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:452 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:453 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:453 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:454 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:454 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:1655 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1655 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1723 Converting extraction limits to [[3.5], [11.5]] DEBUG stpipe.Extract1dStep:extract.py:1723 Converting extraction limits to [[3.5], [11.5]] INFO stpipe.Extract1dStep:extract.py:3433 Using extraction limits: xstart=0, xstop=274, ystart=4.0, ystop=11.0 INFO stpipe.Extract1dStep:extract.py:3433 Using extraction limits: xstart=0, xstop=274, ystart=4.0, ystop=11.0 INFO stpipe.Extract1dStep:extract.py:2813 Working on slit 5 INFO stpipe.Extract1dStep:extract.py:2813 Working on slit 5 DEBUG stpipe.Extract1dStep:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Extract1dStep:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> INFO stpipe.Extract1dStep:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:3614 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Extract1dStep:extract.py:440 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:440 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:441 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:441 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:442 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:442 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:444 initial xstop = 1278 DEBUG stpipe.Extract1dStep:extract.py:444 initial xstop = 1278 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:446 initial ystop = 16 DEBUG stpipe.Extract1dStep:extract.py:446 initial ystop = 16 DEBUG stpipe.Extract1dStep:extract.py:447 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:447 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:448 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:451 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:451 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:452 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:452 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:453 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:453 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:454 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:454 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:1655 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1655 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] DEBUG stpipe.Extract1dStep:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] INFO stpipe.Extract1dStep:extract.py:3433 Using extraction limits: xstart=0, xstop=1278, ystart=4.5, ystop=11.5 INFO stpipe.Extract1dStep:extract.py:3433 Using extraction limits: xstart=0, xstop=1278, ystart=4.5, ystop=11.5 INFO stpipe.Extract1dStep:extract.py:2813 Working on slit 10 INFO stpipe.Extract1dStep:extract.py:2813 Working on slit 10 DEBUG stpipe.Extract1dStep:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Extract1dStep:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> INFO stpipe.Extract1dStep:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:3614 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Extract1dStep:extract.py:440 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:440 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:441 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:441 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:442 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:442 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:444 initial xstop = 781 DEBUG stpipe.Extract1dStep:extract.py:444 initial xstop = 781 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:446 initial ystop = 16 DEBUG stpipe.Extract1dStep:extract.py:446 initial ystop = 16 DEBUG stpipe.Extract1dStep:extract.py:447 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:447 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:448 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:451 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:451 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:452 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:452 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:453 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:453 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:454 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:454 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:1655 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1655 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] DEBUG stpipe.Extract1dStep:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] INFO stpipe.Extract1dStep:extract.py:3433 Using extraction limits: xstart=0, xstop=781, ystart=4.5, ystop=11.5 INFO stpipe.Extract1dStep:extract.py:3433 Using extraction limits: xstart=0, xstop=781, ystart=4.5, ystop=11.5 INFO stpipe.Extract1dStep:extract.py:2813 Working on slit 16 INFO stpipe.Extract1dStep:extract.py:2813 Working on slit 16 DEBUG stpipe.Extract1dStep:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Extract1dStep:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> INFO stpipe.Extract1dStep:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:3614 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Extract1dStep:extract.py:440 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:440 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:441 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:441 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:442 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:442 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:444 initial xstop = 1011 DEBUG stpipe.Extract1dStep:extract.py:444 initial xstop = 1011 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:446 initial ystop = 16 DEBUG stpipe.Extract1dStep:extract.py:446 initial ystop = 16 DEBUG stpipe.Extract1dStep:extract.py:447 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:447 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:448 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:451 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:451 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:452 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:452 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:453 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:453 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:454 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:454 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:1655 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1655 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] DEBUG stpipe.Extract1dStep:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] INFO stpipe.Extract1dStep:extract.py:3433 Using extraction limits: xstart=0, xstop=1011, ystart=4.5, ystop=11.5 INFO stpipe.Extract1dStep:extract.py:3433 Using extraction limits: xstart=0, xstop=1011, ystart=4.5, ystop=11.5 DEBUG stpipe.Extract1dStep:extract.py:2952 Not copying from the INT_TIMES table because this is not a TSO exposure. DEBUG stpipe.Extract1dStep:extract.py:2952 Not copying from the INT_TIMES table because this is not a TSO exposure. INFO stpipe.Extract1dStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.Extract1dStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.Extract1dStep:step.py:546 Step Extract1dStep done INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:120 Combining 1D background spectra into master background INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:120 Combining 1D background spectra into master background DEBUG stpipe.MasterBackgroundMosStep:combine1d.py:564 Using exptime_key = exposure_time. DEBUG stpipe.MasterBackgroundMosStep:combine1d.py:564 Using exptime_key = exposure_time. INFO stpipe.MasterBackgroundMosStep:combine1d.py:529 Using exposure time as the weight. INFO stpipe.MasterBackgroundMosStep:combine1d.py:529 Using exposure time as the weight. INFO stpipe.MasterBackgroundMosStep:combine1d.py:204 Accumulating data from input spectrum 1 INFO stpipe.MasterBackgroundMosStep:combine1d.py:204 Accumulating data from input spectrum 1 INFO stpipe.MasterBackgroundMosStep:combine1d.py:204 Accumulating data from input spectrum 2 INFO stpipe.MasterBackgroundMosStep:combine1d.py:204 Accumulating data from input spectrum 2 INFO stpipe.MasterBackgroundMosStep:combine1d.py:204 Accumulating data from input spectrum 3 INFO stpipe.MasterBackgroundMosStep:combine1d.py:204 Accumulating data from input spectrum 3 INFO stpipe.MasterBackgroundMosStep:combine1d.py:204 Accumulating data from input spectrum 4 INFO stpipe.MasterBackgroundMosStep:combine1d.py:204 Accumulating data from input spectrum 4 WARNING stpipe.MasterBackgroundMosStep:combine1d.py:232 2 output pixel numbers were NaN WARNING stpipe.MasterBackgroundMosStep:combine1d.py:232 2 output pixel numbers were NaN WARNING stpipe.MasterBackgroundMosStep:combine1d.py:241 1 elements of output had no corresponding input data; WARNING stpipe.MasterBackgroundMosStep:combine1d.py:241 1 elements of output had no corresponding input data; WARNING stpipe.MasterBackgroundMosStep:combine1d.py:243 these elements will be omitted. WARNING stpipe.MasterBackgroundMosStep:combine1d.py:243 these elements will be omitted. INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:69 Interpolating 1D master background to all MOS 2D slitlets INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:69 Interpolating 1D master background to all MOS 2D slitlets INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 6 INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 6 INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 3 INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 3 INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 4 INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 4 INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 5 INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 5 INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 8 INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 8 INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 10 INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 10 INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 14 INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 14 INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 16 INFO stpipe.MasterBackgroundMosStep:expand_to_2d.py:160 Expanding background for slit 16 INFO stpipe.MasterBackgroundMosStep.photom:step.py:430 Step photom running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundMosStep.photom:step.py:434 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'photom', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': 'EXTENDED'} DEBUG stpipe.MasterBackgroundMosStep.photom:photom_step.py:35 Input is MultiSlitModel INFO stpipe.MasterBackgroundMosStep.photom:photom_step.py:46 Using previously specified correction parameters. INFO stpipe.MasterBackgroundMosStep.photom:photom_step.py:55 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits INFO stpipe.MasterBackgroundMosStep.photom:photom_step.py:56 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits INFO stpipe.MasterBackgroundMosStep.photom:photom.py:144 Using instrument: NIRSPEC INFO stpipe.MasterBackgroundMosStep.photom:photom.py:144 Using instrument: NIRSPEC INFO stpipe.MasterBackgroundMosStep.photom:photom.py:145 detector: NRS1 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:145 detector: NRS1 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:146 exp_type: NRS_MSASPEC INFO stpipe.MasterBackgroundMosStep.photom:photom.py:146 exp_type: NRS_MSASPEC INFO stpipe.MasterBackgroundMosStep.photom:photom.py:148 filter: F170LP INFO stpipe.MasterBackgroundMosStep.photom:photom.py:148 filter: F170LP INFO stpipe.MasterBackgroundMosStep.photom:photom.py:152 grating: G235M INFO stpipe.MasterBackgroundMosStep.photom:photom.py:152 grating: G235M INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 6 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 6 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 3 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 3 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 4 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 4 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 5 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 5 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 8 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 8 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 10 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 14 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 14 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 16 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:250 Working on slit 16 DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundMosStep.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundMosStep.photom:step.py:546 Step photom done INFO stpipe.MasterBackgroundMosStep.barshadow:step.py:430 Step barshadow running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundMosStep.barshadow:step.py:434 Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'barshadow', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': 'EXTENDED'} DEBUG stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 6 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 6 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 5 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 5 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 14 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 14 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 16 INFO stpipe.MasterBackgroundMosStep.barshadow:bar_shadow.py:66 Working on slitlet 16 INFO stpipe.MasterBackgroundMosStep.barshadow:step.py:546 Step barshadow done INFO stpipe.MasterBackgroundMosStep.pathloss:step.py:430 Step pathloss running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundMosStep.pathloss:step.py:434 Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'pathloss', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': 'EXTENDED'} INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:232 Input exposure type is NRS_MSASPEC INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:232 Input exposure type is NRS_MSASPEC INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 0 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 0 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 1 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 1 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 2 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 2 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 3 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 3 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 4 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 4 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 5 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 5 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 6 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 6 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 7 INFO stpipe.MasterBackgroundMosStep.pathloss:pathloss.py:395 Working on slit 7 INFO stpipe.MasterBackgroundMosStep.pathloss:step.py:546 Step pathloss done INFO stpipe.MasterBackgroundMosStep.flat_field:step.py:430 Step flat_field running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundMosStep.flat_field:step.py:434 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'flat_field', 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': True} DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field_step.py:74 Input is MultiSlitModel of exposure type NRS_MSASPEC INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field_step.py:110 Using flat field from correction pars <MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits> DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 6 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 6 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 3 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 3 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 4 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 4 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 5 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 5 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 8 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 8 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 10 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 10 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 14 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 14 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 16 INFO stpipe.MasterBackgroundMosStep.flat_field:flat_field.py:367 Working on slit 16 INFO stpipe.MasterBackgroundMosStep.flat_field:step.py:546 Step flat_field done INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:37 Subtracting master background from each MOS source slitlet INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:37 Subtracting master background from each MOS source slitlet INFO stpipe.MasterBackgroundMosStep:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.MasterBackgroundMosStep:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.MasterBackgroundMosStep:step.py:546 Step MasterBackgroundMosStep done INFO stpipe.MasterBackgroundMosStep:step.py:430 Step MasterBackgroundMosStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundMosStep:step.py:434 Step MasterBackgroundMosStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'masterbackgroundmosstep', 'search_output_file': True, 'input_dir': '', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}}} INFO stpipe.MasterBackgroundMosStep:master_background_mos_step.py:118 Using pre-calculated correction parameters. INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:37 Subtracting master background from each MOS source slitlet INFO stpipe.MasterBackgroundMosStep:nirspec_utils.py:37 Subtracting master background from each MOS source slitlet INFO stpipe.MasterBackgroundMosStep:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.MasterBackgroundMosStep:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.MasterBackgroundMosStep:step.py:546 Step MasterBackgroundMosStep done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg[cal] | 159.26 | |
|
-----------------------------Captured stderr setup------------------------------ 2022-10-06 04:47:09,460 - stpipe.Spec2Pipeline - INFO - Spec2Pipeline instance created. 2022-10-06 04:47:09,461 - stpipe.Spec2Pipeline.bkg_subtract - INFO - BackgroundStep instance created. 2022-10-06 04:47:09,462 - stpipe.Spec2Pipeline.assign_wcs - INFO - AssignWcsStep instance created. 2022-10-06 04:47:09,463 - stpipe.Spec2Pipeline.imprint_subtract - INFO - ImprintStep instance created. 2022-10-06 04:47:09,464 - stpipe.Spec2Pipeline.msa_flagging - INFO - MSAFlagOpenStep instance created. 2022-10-06 04:47:09,464 - stpipe.Spec2Pipeline.extract_2d - INFO - Extract2dStep instance created. 2022-10-06 04:47:09,467 - stpipe.Spec2Pipeline.master_background_mos - INFO - MasterBackgroundMosStep instance created. 2022-10-06 04:47:09,468 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - FlatFieldStep instance created. 2022-10-06 04:47:09,469 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - PathLossStep instance created. 2022-10-06 04:47:09,469 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - BarShadowStep instance created. 2022-10-06 04:47:09,470 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - PhotomStep instance created. 2022-10-06 04:47:09,471 - stpipe.Spec2Pipeline.wavecorr - INFO - WavecorrStep instance created. 2022-10-06 04:47:09,472 - stpipe.Spec2Pipeline.flat_field - INFO - FlatFieldStep instance created. 2022-10-06 04:47:09,472 - stpipe.Spec2Pipeline.srctype - INFO - SourceTypeStep instance created. 2022-10-06 04:47:09,473 - stpipe.Spec2Pipeline.straylight - INFO - StraylightStep instance created. 2022-10-06 04:47:09,474 - stpipe.Spec2Pipeline.fringe - INFO - FringeStep instance created. 2022-10-06 04:47:09,474 - stpipe.Spec2Pipeline.pathloss - INFO - PathLossStep instance created. 2022-10-06 04:47:09,475 - stpipe.Spec2Pipeline.barshadow - INFO - BarShadowStep instance created. 2022-10-06 04:47:09,476 - stpipe.Spec2Pipeline.wfss_contam - INFO - WfssContamStep instance created. 2022-10-06 04:47:09,477 - stpipe.Spec2Pipeline.photom - INFO - PhotomStep instance created. 2022-10-06 04:47:09,478 - stpipe.Spec2Pipeline.resample_spec - INFO - ResampleSpecStep instance created. 2022-10-06 04:47:09,479 - stpipe.Spec2Pipeline.cube_build - INFO - CubeBuildStep instance created. 2022-10-06 04:47:09,480 - stpipe.Spec2Pipeline.extract_1d - INFO - Extract1dStep instance created. 2022-10-06 04:47:10,500 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits_rate.fits',). 2022-10-06 04:47:10,514 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_bsub': False, 'fail_on_exception': True, 'save_wfss_esec': False, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000}, 'master_background_mos': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'force_subtract': False, 'save_background': True, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'source_type': None}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'wfss_contam': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_simulated_image': False, 'save_contam_images': False, 'maximum_cores': 'none'}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'drizzle', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None}}} 2022-10-06 04:47:10,735 - stpipe.Spec2Pipeline - INFO - Prefetching reference files for dataset: 'nrs_mos_with_bkgslits_rate.fits' reftypes = ['apcorr', 'area', 'barshadow', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'mrsxartcorr', 'msa', 'msaoper', 'ote', 'pathloss', 'photom', 'regions', 'sflat', 'speckernel', 'specprofile', 'spectrace', 'specwcs', 'wavecorr', 'wavelengthrange', 'wavemap', 'wfssbkg'] 2022-10-06 04:47:10,755 - stpipe.Spec2Pipeline - INFO - Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits'. 2022-10-06 04:47:10,756 - stpipe.Spec2Pipeline - INFO - Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits'. 2022-10-06 04:47:10,757 - stpipe.Spec2Pipeline - INFO - Prefetch for BARSHADOW reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits'. 2022-10-06 04:47:10,758 - stpipe.Spec2Pipeline - INFO - Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. 2022-10-06 04:47:10,759 - stpipe.Spec2Pipeline - INFO - Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. 2022-10-06 04:47:10,760 - stpipe.Spec2Pipeline - INFO - Prefetch for CUBEPAR reference file is 'N/A'. 2022-10-06 04:47:10,760 - stpipe.Spec2Pipeline - INFO - Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits'. 2022-10-06 04:47:10,761 - stpipe.Spec2Pipeline - INFO - Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf'. 2022-10-06 04:47:10,762 - stpipe.Spec2Pipeline - INFO - Prefetch for DISTORTION reference file is 'N/A'. 2022-10-06 04:47:10,763 - stpipe.Spec2Pipeline - INFO - Prefetch for DRIZPARS reference file is 'N/A'. 2022-10-06 04:47:10,763 - stpipe.Spec2Pipeline - INFO - Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json'. 2022-10-06 04:47:10,763 - stpipe.Spec2Pipeline - INFO - Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits'. 2022-10-06 04:47:10,764 - stpipe.Spec2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is 'N/A'. 2022-10-06 04:47:10,764 - stpipe.Spec2Pipeline - INFO - Prefetch for FLAT reference file is 'N/A'. 2022-10-06 04:47:10,764 - stpipe.Spec2Pipeline - INFO - Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf'. 2022-10-06 04:47:10,765 - stpipe.Spec2Pipeline - INFO - Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. 2022-10-06 04:47:10,766 - stpipe.Spec2Pipeline - INFO - Prefetch for FRINGE reference file is 'N/A'. 2022-10-06 04:47:10,766 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'. 2022-10-06 04:47:10,766 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'. 2022-10-06 04:47:10,766 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'. 2022-10-06 04:47:10,766 - stpipe.Spec2Pipeline - INFO - Prefetch for MRSXARTCORR reference file is 'N/A'. 2022-10-06 04:47:10,766 - stpipe.Spec2Pipeline - INFO - Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. 2022-10-06 04:47:10,767 - stpipe.Spec2Pipeline - INFO - Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. 2022-10-06 04:47:10,768 - stpipe.Spec2Pipeline - INFO - Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. 2022-10-06 04:47:10,769 - stpipe.Spec2Pipeline - INFO - Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits'. 2022-10-06 04:47:10,770 - stpipe.Spec2Pipeline - INFO - Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits'. 2022-10-06 04:47:10,771 - stpipe.Spec2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'. 2022-10-06 04:47:10,771 - stpipe.Spec2Pipeline - INFO - Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits'. 2022-10-06 04:47:10,773 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECKERNEL reference file is 'N/A'. 2022-10-06 04:47:10,773 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECPROFILE reference file is 'N/A'. 2022-10-06 04:47:10,773 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECTRACE reference file is 'N/A'. 2022-10-06 04:47:10,773 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'. 2022-10-06 04:47:10,773 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0004.asdf'. 2022-10-06 04:47:10,775 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. 2022-10-06 04:47:10,776 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVEMAP reference file is 'N/A'. 2022-10-06 04:47:10,776 - stpipe.Spec2Pipeline - INFO - Prefetch for WFSSBKG reference file is 'N/A'. 2022-10-06 04:47:10,776 - stpipe.Spec2Pipeline - INFO - Starting calwebb_spec2 ... 2022-10-06 04:47:10,776 - stpipe.Spec2Pipeline - INFO - Processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits 2022-10-06 04:47:10,776 - stpipe.Spec2Pipeline - INFO - Working on input /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits_rate.fits ... 2022-10-06 04:47:11,220 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(2048, 2048) from nrs_mos_with_bkgslits_rate.fits>,). 2022-10-06 04:47:11,221 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} 2022-10-06 04:47:11,383 - stpipe.Spec2Pipeline.assign_wcs - INFO - Retrieving open MSA slitlets for msa_metadata_id = 1 and dither_index = 1 2022-10-06 04:47:11,386 - stpipe.Spec2Pipeline.assign_wcs - INFO - Slitlet_id 5 is background only; assigned source_id = 36 2022-10-06 04:47:11,388 - stpipe.Spec2Pipeline.assign_wcs - INFO - Slitlet_id 6 is background only; assigned source_id = 37 2022-10-06 04:47:11,390 - stpipe.Spec2Pipeline.assign_wcs - INFO - Slitlet_id 10 is background only; assigned source_id = 38 2022-10-06 04:47:11,393 - stpipe.Spec2Pipeline.assign_wcs - INFO - Slitlet_id 16 is background only; assigned source_id = 39 2022-10-06 04:47:11,438 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_ytilt is 0.0 deg 2022-10-06 04:47:11,438 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.0 deg 2022-10-06 04:47:11,439 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_y correction: 0.3763368051194907 deg 2022-10-06 04:47:11,440 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_x correction: 0.0 deg 2022-10-06 04:47:11,773 - stpipe.Spec2Pipeline.assign_wcs - INFO - Slits projected on detector NRS1: [3, 4, 5, 6, 8, 10, 14, 16] 2022-10-06 04:47:11,773 - stpipe.Spec2Pipeline.assign_wcs - INFO - Computing WCS for 8 open slitlets 2022-10-06 04:47:11,813 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_ytilt is 0.0 deg 2022-10-06 04:47:11,814 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.0 deg 2022-10-06 04:47:11,814 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_y correction: 0.3763368051194907 deg 2022-10-06 04:47:11,815 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_x correction: 0.0 deg 2022-10-06 04:47:11,829 - stpipe.Spec2Pipeline.assign_wcs - INFO - SPORDER= -1, wrange=[1.66e-06, 3.17e-06] 2022-10-06 04:47:11,990 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 1 open slits in quadrant 1 2022-10-06 04:47:12,000 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 2 2022-10-06 04:47:12,000 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 7 open slits in quadrant 3 2022-10-06 04:47:12,056 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 4 2022-10-06 04:47:12,056 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 5 2022-10-06 04:47:12,218 - stpipe.Spec2Pipeline.assign_wcs - INFO - Created a NIRSPEC nrs_msaspec pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None, 'msametafile': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits_msa.fits'} 2022-10-06 04:47:12,574 - stpipe.Spec2Pipeline.assign_wcs - INFO - COMPLETED assign_wcs 2022-10-06 04:47:12,588 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs done 2022-10-06 04:47:12,850 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract running with args (<ImageModel(2048, 2048) from nrs_mos_with_bkgslits_rate.fits>, []). 2022-10-06 04:47:12,851 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None} 2022-10-06 04:47:12,851 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step skipped. 2022-10-06 04:47:12,854 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract done 2022-10-06 04:47:13,093 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract running with args (<ImageModel(2048, 2048) from nrs_mos_with_bkgslits_rate.fits>, []). 2022-10-06 04:47:13,094 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'} 2022-10-06 04:47:13,094 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step skipped. 2022-10-06 04:47:13,097 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract done 2022-10-06 04:47:13,381 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging running with args (<ImageModel(2048, 2048) from nrs_mos_with_bkgslits_rate.fits>,). 2022-10-06 04:47:13,381 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'} 2022-10-06 04:47:13,399 - stpipe.Spec2Pipeline.msa_flagging - INFO - Using reference file /grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json 2022-10-06 04:47:13,400 - stpipe.JwstStep - INFO - JwstStep instance created. 2022-10-06 04:47:13,570 - stpipe.Spec2Pipeline.msa_flagging - INFO - gwa_ytilt is 0.0 deg 2022-10-06 04:47:13,570 - stpipe.Spec2Pipeline.msa_flagging - INFO - gwa_xtilt is 0.0 deg 2022-10-06 04:47:13,570 - stpipe.Spec2Pipeline.msa_flagging - INFO - theta_y correction: 0.3763368051194907 deg 2022-10-06 04:47:13,572 - stpipe.Spec2Pipeline.msa_flagging - INFO - theta_x correction: 0.0 deg 2022-10-06 04:47:13,586 - stpipe.Spec2Pipeline.msa_flagging - INFO - SPORDER= -1, wrange=[1.66e-06, 3.17e-06] 2022-10-06 04:47:13,756 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 5 open slits in quadrant 1 2022-10-06 04:47:13,802 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 3 open slits in quadrant 2 2022-10-06 04:47:13,829 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 9 open slits in quadrant 3 2022-10-06 04:47:13,909 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 3 open slits in quadrant 4 2022-10-06 04:47:13,939 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 0 open slits in quadrant 5 2022-10-06 04:47:26,960 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging done 2022-10-06 04:47:27,372 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d running with args (<ImageModel(2048, 2048) from nrs_mos_with_bkgslits_rate.fits>,). 2022-10-06 04:47:27,373 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000} 2022-10-06 04:47:27,396 - stpipe.Spec2Pipeline.extract_2d - INFO - EXP_TYPE is NRS_MSASPEC 2022-10-06 04:47:27,641 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 6 2022-10-06 04:47:27,641 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 1773 2048 2022-10-06 04:47:27,642 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1183 1202 2022-10-06 04:47:27,940 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2022-10-06 04:47:27,955 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.171079994 -27.791417317 53.170747333 -27.791086613 53.170701749 -27.791122314 53.171034405 -27.791453023 2022-10-06 04:47:27,957 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.171079994 -27.791417317 53.170747333 -27.791086613 53.170701749 -27.791122314 53.171034405 -27.791453023 2022-10-06 04:47:28,334 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 3 2022-10-06 04:47:28,334 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 1206 2048 2022-10-06 04:47:28,334 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1423 1445 2022-10-06 04:47:28,600 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2022-10-06 04:47:28,610 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.162391167 -27.807712378 53.162058690 -27.807378878 53.162013132 -27.807414788 53.162345604 -27.807748292 2022-10-06 04:47:28,612 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.162391167 -27.807712378 53.162058690 -27.807378878 53.162013132 -27.807414788 53.162345604 -27.807748292 2022-10-06 04:47:28,844 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 4 2022-10-06 04:47:28,844 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 1267 2048 2022-10-06 04:47:28,844 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1843 1865 2022-10-06 04:47:29,346 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2022-10-06 04:47:29,355 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.172801385 -27.816231603 53.172466245 -27.815895667 53.172420535 -27.815931690 53.172755669 -27.816267630 2022-10-06 04:47:29,356 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.172801385 -27.816231603 53.172466245 -27.815895667 53.172420535 -27.815931690 53.172755669 -27.816267630 2022-10-06 04:47:29,597 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 5 2022-10-06 04:47:29,597 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 769 2048 2022-10-06 04:47:29,597 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1706 1733 2022-10-06 04:47:29,863 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2022-10-06 04:47:29,872 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.157748079 -27.822733115 53.157415101 -27.822396771 53.157369476 -27.822432937 53.157702450 -27.822769286 2022-10-06 04:47:29,873 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.157748079 -27.822733115 53.157415101 -27.822396771 53.157369476 -27.822432937 53.157702450 -27.822769286 2022-10-06 04:47:30,095 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 8 2022-10-06 04:47:30,096 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 1407 2048 2022-10-06 04:47:30,096 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1793 1815 2022-10-06 04:47:30,315 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2022-10-06 04:47:30,324 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.175158841 -27.812378836 53.174823590 -27.812043546 53.174777873 -27.812079509 53.175113118 -27.812414803 2022-10-06 04:47:30,325 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.175158841 -27.812378836 53.174823590 -27.812043546 53.174777873 -27.812079509 53.175113118 -27.812414803 2022-10-06 04:47:30,553 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 10 2022-10-06 04:47:30,554 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 1266 2048 2022-10-06 04:47:30,554 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1303 1325 2022-10-06 04:47:30,769 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2022-10-06 04:47:30,778 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.161308961 -27.803810891 53.160977035 -27.803478276 53.160931508 -27.803514129 53.161263430 -27.803846749 2022-10-06 04:47:30,779 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.161308961 -27.803810891 53.160977035 -27.803478276 53.160931508 -27.803514129 53.161263430 -27.803846749 2022-10-06 04:47:31,335 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 14 2022-10-06 04:47:31,336 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 1070 2048 2022-10-06 04:47:31,336 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1887 1911 2022-10-06 04:47:31,634 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2022-10-06 04:47:31,643 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.168943086 -27.821076314 53.168608247 -27.820739620 53.168562546 -27.820775726 53.168897379 -27.821112425 2022-10-06 04:47:31,644 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.168943086 -27.821076314 53.168608247 -27.820739620 53.168562546 -27.820775726 53.168897379 -27.821112425 2022-10-06 04:47:31,865 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 16 2022-10-06 04:47:31,865 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 1036 2048 2022-10-06 04:47:31,865 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1922 1946 2022-10-06 04:47:32,095 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2022-10-06 04:47:32,106 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.168839729 -27.822560211 53.168504787 -27.822223220 53.168459077 -27.822259350 53.168794014 -27.822596346 2022-10-06 04:47:32,107 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.168839729 -27.822560211 53.168504787 -27.822223220 53.168459077 -27.822259350 53.168794014 -27.822596346 2022-10-06 04:47:32,581 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d done 2022-10-06 04:47:32,979 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2022-10-06 04:47:32,981 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'source_type': None} 2022-10-06 04:47:32,994 - stpipe.Spec2Pipeline.srctype - INFO - Input EXP_TYPE is NRS_MSASPEC 2022-10-06 04:47:32,996 - stpipe.Spec2Pipeline.srctype - INFO - source_id=37, stellarity=0.0000, type=EXTENDED 2022-10-06 04:47:32,998 - stpipe.Spec2Pipeline.srctype - INFO - source_id=35, stellarity=0.9200, type=POINT 2022-10-06 04:47:32,999 - stpipe.Spec2Pipeline.srctype - INFO - source_id=29, stellarity=0.1500, type=EXTENDED 2022-10-06 04:47:33,000 - stpipe.Spec2Pipeline.srctype - INFO - source_id=36, stellarity=0.0000, type=EXTENDED 2022-10-06 04:47:33,002 - stpipe.Spec2Pipeline.srctype - INFO - source_id=15, stellarity=0.8200, type=POINT 2022-10-06 04:47:33,003 - stpipe.Spec2Pipeline.srctype - INFO - source_id=38, stellarity=0.0000, type=EXTENDED 2022-10-06 04:47:33,004 - stpipe.Spec2Pipeline.srctype - INFO - source_id=6, stellarity=0.4800, type=EXTENDED 2022-10-06 04:47:33,005 - stpipe.Spec2Pipeline.srctype - INFO - source_id=39, stellarity=0.0000, type=EXTENDED 2022-10-06 04:47:33,009 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype done 2022-10-06 04:47:33,308 - stpipe.Spec2Pipeline.master_background_mos - INFO - Step master_background_mos running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2022-10-06 04:47:33,311 - stpipe.Spec2Pipeline.master_background_mos - INFO - Step master_background_mos parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'force_subtract': False, 'save_background': True, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}}} 2022-10-06 04:47:33,319 - stpipe.Spec2Pipeline.master_background_mos - INFO - Calculating master background 2022-10-06 04:47:33,623 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - Step flat_field running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2022-10-06 04:47:33,624 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2022-10-06 04:47:40,147 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - Working on slit 6 2022-10-06 04:47:41,341 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - Working on slit 3 2022-10-06 04:47:44,683 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - Working on slit 4 2022-10-06 04:47:47,793 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - Working on slit 5 2022-10-06 04:47:52,964 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - Working on slit 8 2022-10-06 04:47:55,584 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - Working on slit 10 2022-10-06 04:47:58,890 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - Working on slit 14 2022-10-06 04:48:02,921 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - Working on slit 16 2022-10-06 04:48:07,265 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - Step flat_field done 2022-10-06 04:48:07,693 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Step pathloss running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2022-10-06 04:48:07,695 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': 'EXTENDED'} 2022-10-06 04:48:07,757 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits 2022-10-06 04:48:07,860 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Input exposure type is NRS_MSASPEC 2022-10-06 04:48:10,055 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Working on slit 0 2022-10-06 04:48:10,076 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Working on slit 1 2022-10-06 04:48:10,098 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Working on slit 2 2022-10-06 04:48:10,117 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Working on slit 3 2022-10-06 04:48:10,139 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Working on slit 4 2022-10-06 04:48:10,160 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Working on slit 5 2022-10-06 04:48:10,181 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Working on slit 6 2022-10-06 04:48:10,202 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Working on slit 7 2022-10-06 04:48:10,228 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Step pathloss done 2022-10-06 04:48:10,972 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - Step barshadow running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2022-10-06 04:48:10,973 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': 'EXTENDED'} 2022-10-06 04:48:11,014 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits 2022-10-06 04:48:12,580 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - Working on slitlet 6 2022-10-06 04:48:12,645 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - Working on slitlet 3 2022-10-06 04:48:12,744 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - Working on slitlet 4 2022-10-06 04:48:12,841 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - Working on slitlet 5 2022-10-06 04:48:13,079 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - Working on slitlet 8 2022-10-06 04:48:13,162 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - Working on slitlet 10 2022-10-06 04:48:13,252 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - Working on slitlet 14 2022-10-06 04:48:13,365 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - Working on slitlet 16 2022-10-06 04:48:13,480 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - Step barshadow done 2022-10-06 04:48:14,072 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Step photom running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2022-10-06 04:48:14,075 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': 'EXTENDED'} 2022-10-06 04:48:14,133 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits 2022-10-06 04:48:14,133 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits 2022-10-06 04:48:15,660 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Using instrument: NIRSPEC 2022-10-06 04:48:15,660 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - detector: NRS1 2022-10-06 04:48:15,660 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - exp_type: NRS_MSASPEC 2022-10-06 04:48:15,660 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - filter: F170LP 2022-10-06 04:48:15,660 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - grating: G235M 2022-10-06 04:48:15,779 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Working on slit 6 2022-10-06 04:48:15,780 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:48:15,789 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Working on slit 3 2022-10-06 04:48:15,790 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:48:15,800 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Working on slit 4 2022-10-06 04:48:15,800 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:48:15,810 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Working on slit 5 2022-10-06 04:48:15,811 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:48:15,822 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Working on slit 8 2022-10-06 04:48:15,822 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:48:15,833 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Working on slit 10 2022-10-06 04:48:15,833 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:48:15,843 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Working on slit 14 2022-10-06 04:48:15,844 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:48:15,854 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Working on slit 16 2022-10-06 04:48:15,854 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:48:15,875 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Step photom done 2022-10-06 04:48:15,876 - stpipe.Spec2Pipeline.master_background_mos - INFO - Creating MOS master background from background slitlets 2022-10-06 04:48:15,897 - stpipe.Spec2Pipeline.master_background_mos - INFO - Using background slitlet background_6 2022-10-06 04:48:15,897 - stpipe.Spec2Pipeline.master_background_mos - INFO - Using background slitlet background_5 2022-10-06 04:48:15,897 - stpipe.Spec2Pipeline.master_background_mos - INFO - Using background slitlet background_10 2022-10-06 04:48:15,897 - stpipe.Spec2Pipeline.master_background_mos - INFO - Using background slitlet background_16 2022-10-06 04:48:16,711 - stpipe.Spec2Pipeline.master_background_mos - INFO - Applying resampling and 1D extraction to background slits 2022-10-06 04:48:16,729 - stpipe.ResampleSpecStep - INFO - ResampleSpecStep instance created. 2022-10-06 04:48:17,120 - stpipe.ResampleSpecStep - INFO - Step ResampleSpecStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2022-10-06 04:48:17,121 - stpipe.ResampleSpecStep - INFO - Step ResampleSpecStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True} 2022-10-06 04:48:17,155 - stpipe.ResampleSpecStep - INFO - No DRIZPARS reffile 2022-10-06 04:48:17,156 - stpipe.ResampleSpecStep - INFO - using: pixfrac=1.0 2022-10-06 04:48:17,156 - stpipe.ResampleSpecStep - INFO - using: kernel='square' 2022-10-06 04:48:17,157 - stpipe.ResampleSpecStep - INFO - using: fillval='INDEF' 2022-10-06 04:48:17,157 - stpipe.ResampleSpecStep - INFO - using: wht_type='ivm' 2022-10-06 04:48:17,157 - stpipe.ResampleSpecStep - INFO - using: pscale_ratio=1.0 2022-10-06 04:48:17,157 - stpipe.ResampleSpecStep - INFO - Reorganizing data from exposure nrs_mos_with_bkgslits_rate.fits 2022-10-06 04:48:18,078 - stpipe.ResampleSpecStep - INFO - Driz parameter kernal: square 2022-10-06 04:48:18,078 - stpipe.ResampleSpecStep - INFO - Driz parameter pixfrac: 1.0 2022-10-06 04:48:18,078 - stpipe.ResampleSpecStep - INFO - Driz parameter fillval: INDEF 2022-10-06 04:48:18,078 - stpipe.ResampleSpecStep - INFO - Driz parameter weight_type: ivm 2022-10-06 04:48:18,253 - stpipe.ResampleSpecStep - INFO - Resampling science data 2022-10-06 04:48:18,298 - stpipe.ResampleSpecStep - INFO - Drizzling (19, 275) --> (16, 275) 2022-10-06 04:48:18,299 - stpipe.ResampleSpecStep - INFO - Resampling var_rnoise 2022-10-06 04:48:18,338 - stpipe.ResampleSpecStep - INFO - Drizzling (19, 275) --> (16, 275) 2022-10-06 04:48:18,340 - stpipe.ResampleSpecStep - INFO - Resampling var_poisson 2022-10-06 04:48:18,381 - stpipe.ResampleSpecStep - INFO - Drizzling (19, 275) --> (16, 275) 2022-10-06 04:48:18,383 - stpipe.ResampleSpecStep - INFO - Resampling var_flat 2022-10-06 04:48:18,427 - stpipe.ResampleSpecStep - INFO - Drizzling (19, 275) --> (16, 275) 2022-10-06 04:48:18,454 - stpipe.ResampleSpecStep - INFO - Update S_REGION to POLYGON ICRS 53.158246078 -27.801207374 53.171030520 -27.801207374 53.171030520 -27.791100221 53.158246078 -27.791100221 2022-10-06 04:48:18,844 - stpipe.ResampleSpecStep - INFO - Driz parameter kernal: square 2022-10-06 04:48:18,844 - stpipe.ResampleSpecStep - INFO - Driz parameter pixfrac: 1.0 2022-10-06 04:48:18,844 - stpipe.ResampleSpecStep - INFO - Driz parameter fillval: INDEF 2022-10-06 04:48:18,844 - stpipe.ResampleSpecStep - INFO - Driz parameter weight_type: ivm 2022-10-06 04:48:19,029 - stpipe.ResampleSpecStep - INFO - Resampling science data 2022-10-06 04:48:19,105 - stpipe.ResampleSpecStep - INFO - Drizzling (27, 1279) --> (17, 1279) 2022-10-06 04:48:19,109 - stpipe.ResampleSpecStep - INFO - Resampling var_rnoise 2022-10-06 04:48:19,196 - stpipe.ResampleSpecStep - INFO - Drizzling (27, 1279) --> (17, 1279) 2022-10-06 04:48:19,206 - stpipe.ResampleSpecStep - INFO - Resampling var_poisson 2022-10-06 04:48:19,292 - stpipe.ResampleSpecStep - INFO - Drizzling (27, 1279) --> (17, 1279) 2022-10-06 04:48:19,301 - stpipe.ResampleSpecStep - INFO - Resampling var_flat 2022-10-06 04:48:19,403 - stpipe.ResampleSpecStep - INFO - Drizzling (27, 1279) --> (17, 1279) 2022-10-06 04:48:19,459 - stpipe.ResampleSpecStep - INFO - Update S_REGION to POLYGON ICRS 53.098753934 -27.869721036 53.157714961 -27.869721036 53.157714961 -27.822404837 53.098753934 -27.822404837 2022-10-06 04:48:19,784 - stpipe.ResampleSpecStep - INFO - Driz parameter kernal: square 2022-10-06 04:48:19,784 - stpipe.ResampleSpecStep - INFO - Driz parameter pixfrac: 1.0 2022-10-06 04:48:19,785 - stpipe.ResampleSpecStep - INFO - Driz parameter fillval: INDEF 2022-10-06 04:48:19,785 - stpipe.ResampleSpecStep - INFO - Driz parameter weight_type: ivm 2022-10-06 04:48:19,968 - stpipe.ResampleSpecStep - INFO - Resampling science data 2022-10-06 04:48:20,523 - stpipe.ResampleSpecStep - INFO - Drizzling (22, 782) --> (17, 782) 2022-10-06 04:48:20,526 - stpipe.ResampleSpecStep - INFO - Resampling var_rnoise 2022-10-06 04:48:20,578 - stpipe.ResampleSpecStep - INFO - Drizzling (22, 782) --> (17, 782) 2022-10-06 04:48:20,582 - stpipe.ResampleSpecStep - INFO - Resampling var_poisson 2022-10-06 04:48:20,634 - stpipe.ResampleSpecStep - INFO - Drizzling (22, 782) --> (17, 782) 2022-10-06 04:48:20,639 - stpipe.ResampleSpecStep - INFO - Resampling var_flat 2022-10-06 04:48:20,689 - stpipe.ResampleSpecStep - INFO - Drizzling (22, 782) --> (17, 782) 2022-10-06 04:48:20,721 - stpipe.ResampleSpecStep - INFO - Update S_REGION to POLYGON ICRS 53.125376182 -27.832054342 53.161275561 -27.832054342 53.161275561 -27.803486876 53.125376182 -27.803486876 2022-10-06 04:48:21,037 - stpipe.ResampleSpecStep - INFO - Driz parameter kernal: square 2022-10-06 04:48:21,037 - stpipe.ResampleSpecStep - INFO - Driz parameter pixfrac: 1.0 2022-10-06 04:48:21,037 - stpipe.ResampleSpecStep - INFO - Driz parameter fillval: INDEF 2022-10-06 04:48:21,038 - stpipe.ResampleSpecStep - INFO - Driz parameter weight_type: ivm 2022-10-06 04:48:21,229 - stpipe.ResampleSpecStep - INFO - Resampling science data 2022-10-06 04:48:21,292 - stpipe.ResampleSpecStep - INFO - Drizzling (24, 1012) --> (17, 1012) 2022-10-06 04:48:21,295 - stpipe.ResampleSpecStep - INFO - Resampling var_rnoise 2022-10-06 04:48:21,354 - stpipe.ResampleSpecStep - INFO - Drizzling (24, 1012) --> (17, 1012) 2022-10-06 04:48:21,359 - stpipe.ResampleSpecStep - INFO - Resampling var_poisson 2022-10-06 04:48:21,417 - stpipe.ResampleSpecStep - INFO - Drizzling (24, 1012) --> (17, 1012) 2022-10-06 04:48:21,422 - stpipe.ResampleSpecStep - INFO - Resampling var_flat 2022-10-06 04:48:21,484 - stpipe.ResampleSpecStep - INFO - Drizzling (24, 1012) --> (17, 1012) 2022-10-06 04:48:21,520 - stpipe.ResampleSpecStep - INFO - Update S_REGION to POLYGON ICRS 53.122178099 -27.859535791 53.168806624 -27.859535791 53.168806624 -27.822230934 53.122178099 -27.822230934 2022-10-06 04:48:21,577 - stpipe.ResampleSpecStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:48:21,578 - stpipe.ResampleSpecStep - INFO - Step ResampleSpecStep done 2022-10-06 04:48:21,597 - stpipe.Extract1dStep - INFO - Extract1dStep instance created. 2022-10-06 04:48:22,096 - stpipe.Extract1dStep - INFO - Step Extract1dStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2022-10-06 04:48:22,098 - stpipe.Extract1dStep - INFO - Step Extract1dStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None} 2022-10-06 04:48:22,126 - stpipe.Extract1dStep - INFO - Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json 2022-10-06 04:48:22,145 - stpipe.Extract1dStep - INFO - Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits 2022-10-06 04:48:22,196 - stpipe.Extract1dStep - INFO - Turning on source position correction for exp_type = NRS_MSASPEC 2022-10-06 04:48:22,196 - stpipe.Extract1dStep - INFO - Working on slit 6 2022-10-06 04:48:22,196 - stpipe.Extract1dStep - INFO - Setting use_source_posn to False for source type EXTENDED 2022-10-06 04:48:22,207 - stpipe.Extract1dStep - INFO - Using extraction limits: xstart=0, xstop=274, ystart=4.0, ystop=11.0 2022-10-06 04:48:22,310 - stpipe.Extract1dStep - INFO - Working on slit 5 2022-10-06 04:48:22,310 - stpipe.Extract1dStep - INFO - Setting use_source_posn to False for source type EXTENDED 2022-10-06 04:48:22,329 - stpipe.Extract1dStep - INFO - Using extraction limits: xstart=0, xstop=1278, ystart=4.5, ystop=11.5 2022-10-06 04:48:22,570 - stpipe.Extract1dStep - INFO - Working on slit 10 2022-10-06 04:48:22,570 - stpipe.Extract1dStep - INFO - Setting use_source_posn to False for source type EXTENDED 2022-10-06 04:48:22,585 - stpipe.Extract1dStep - INFO - Using extraction limits: xstart=0, xstop=781, ystart=4.5, ystop=11.5 2022-10-06 04:48:22,761 - stpipe.Extract1dStep - INFO - Working on slit 16 2022-10-06 04:48:22,761 - stpipe.Extract1dStep - INFO - Setting use_source_posn to False for source type EXTENDED 2022-10-06 04:48:22,778 - stpipe.Extract1dStep - INFO - Using extraction limits: xstart=0, xstop=1011, ystart=4.5, ystop=11.5 2022-10-06 04:48:22,990 - stpipe.Extract1dStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:48:22,991 - stpipe.Extract1dStep - INFO - Step Extract1dStep done 2022-10-06 04:48:22,991 - stpipe.Spec2Pipeline.master_background_mos - INFO - Combining 1D background spectra into master background 2022-10-06 04:48:22,991 - stpipe.Spec2Pipeline.master_background_mos - INFO - Using exposure time as the weight. 2022-10-06 04:48:23,063 - stpipe.Spec2Pipeline.master_background_mos - INFO - Accumulating data from input spectrum 1 2022-10-06 04:48:23,065 - stpipe.Spec2Pipeline.master_background_mos - INFO - Accumulating data from input spectrum 2 2022-10-06 04:48:23,071 - stpipe.Spec2Pipeline.master_background_mos - INFO - Accumulating data from input spectrum 3 2022-10-06 04:48:23,075 - stpipe.Spec2Pipeline.master_background_mos - INFO - Accumulating data from input spectrum 4 2022-10-06 04:48:23,080 - stpipe.Spec2Pipeline.master_background_mos - WARNING - 2 output pixel numbers were NaN 2022-10-06 04:48:23,080 - stpipe.Spec2Pipeline.master_background_mos - WARNING - 20 elements of output had no corresponding input data; 2022-10-06 04:48:23,080 - stpipe.Spec2Pipeline.master_background_mos - WARNING - these elements will be omitted. 2022-10-06 04:48:23,146 - stpipe.Spec2Pipeline.master_background_mos - INFO - Interpolating 1D master background to all MOS 2D slitlets 2022-10-06 04:48:24,663 - stpipe.Spec2Pipeline.master_background_mos - INFO - Expanding background for slit 6 2022-10-06 04:48:24,663 - stpipe.Spec2Pipeline.master_background_mos - INFO - Expanding background for slit 3 2022-10-06 04:48:24,664 - stpipe.Spec2Pipeline.master_background_mos - INFO - Expanding background for slit 4 2022-10-06 04:48:24,664 - stpipe.Spec2Pipeline.master_background_mos - INFO - Expanding background for slit 5 2022-10-06 04:48:24,665 - stpipe.Spec2Pipeline.master_background_mos - INFO - Expanding background for slit 8 2022-10-06 04:48:24,665 - stpipe.Spec2Pipeline.master_background_mos - INFO - Expanding background for slit 10 2022-10-06 04:48:24,666 - stpipe.Spec2Pipeline.master_background_mos - INFO - Expanding background for slit 14 2022-10-06 04:48:24,666 - stpipe.Spec2Pipeline.master_background_mos - INFO - Expanding background for slit 16 2022-10-06 04:48:25,211 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Step photom running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2022-10-06 04:48:25,213 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'photom', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': True, 'source_type': 'EXTENDED'} 2022-10-06 04:48:25,221 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Using previously specified correction parameters. 2022-10-06 04:48:25,221 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits 2022-10-06 04:48:25,221 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits 2022-10-06 04:48:26,721 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Using instrument: NIRSPEC 2022-10-06 04:48:26,721 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - detector: NRS1 2022-10-06 04:48:26,722 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - exp_type: NRS_MSASPEC 2022-10-06 04:48:26,722 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - filter: F170LP 2022-10-06 04:48:26,722 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - grating: G235M 2022-10-06 04:48:26,814 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Working on slit 6 2022-10-06 04:48:26,815 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:48:26,824 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Working on slit 3 2022-10-06 04:48:26,825 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:48:26,834 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Working on slit 4 2022-10-06 04:48:26,835 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:48:26,844 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Working on slit 5 2022-10-06 04:48:26,844 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:48:26,855 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Working on slit 8 2022-10-06 04:48:26,855 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:48:26,864 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Working on slit 10 2022-10-06 04:48:26,865 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:48:26,874 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Working on slit 14 2022-10-06 04:48:26,874 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:48:26,885 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Working on slit 16 2022-10-06 04:48:26,885 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:48:26,897 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Step photom done 2022-10-06 04:48:27,495 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - Step barshadow running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2022-10-06 04:48:27,497 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'barshadow', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': True, 'source_type': 'EXTENDED'} 2022-10-06 04:48:28,954 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - Working on slitlet 6 2022-10-06 04:48:28,961 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - Working on slitlet 3 2022-10-06 04:48:28,968 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - Working on slitlet 4 2022-10-06 04:48:28,974 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - Working on slitlet 5 2022-10-06 04:48:28,981 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - Working on slitlet 8 2022-10-06 04:48:28,987 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - Working on slitlet 10 2022-10-06 04:48:28,994 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - Working on slitlet 14 2022-10-06 04:48:29,000 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - Working on slitlet 16 2022-10-06 04:48:29,009 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - Step barshadow done 2022-10-06 04:48:29,523 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Step pathloss running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2022-10-06 04:48:29,524 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'pathloss', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': True, 'source_type': 'EXTENDED'} 2022-10-06 04:48:29,532 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Input exposure type is NRS_MSASPEC 2022-10-06 04:48:31,118 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Working on slit 0 2022-10-06 04:48:31,127 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Working on slit 1 2022-10-06 04:48:31,134 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Working on slit 2 2022-10-06 04:48:31,142 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Working on slit 3 2022-10-06 04:48:31,150 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Working on slit 4 2022-10-06 04:48:31,158 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Working on slit 5 2022-10-06 04:48:31,165 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Working on slit 6 2022-10-06 04:48:31,173 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Working on slit 7 2022-10-06 04:48:31,183 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Step pathloss done 2022-10-06 04:48:31,781 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - Step flat_field running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2022-10-06 04:48:31,783 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'flat_field', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': True} 2022-10-06 04:48:31,791 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - Using flat field from correction pars <MultiSlitModel from nrs_mos_with_bkgslits_rate.fits> 2022-10-06 04:48:33,435 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - Working on slit 6 2022-10-06 04:48:33,445 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - Working on slit 3 2022-10-06 04:48:33,451 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - Working on slit 4 2022-10-06 04:48:33,457 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - Working on slit 5 2022-10-06 04:48:33,463 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - Working on slit 8 2022-10-06 04:48:33,468 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - Working on slit 10 2022-10-06 04:48:33,474 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - Working on slit 14 2022-10-06 04:48:33,480 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - Working on slit 16 2022-10-06 04:48:33,491 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - Step flat_field done 2022-10-06 04:48:33,497 - stpipe.Spec2Pipeline.master_background_mos - INFO - Subtracting master background from each MOS source slitlet 2022-10-06 04:48:35,810 - stpipe.Spec2Pipeline.master_background_mos - INFO - Saved model in nrs_mos_with_bkgslits_masterbg1d.fits 2022-10-06 04:48:38,657 - stpipe.Spec2Pipeline.master_background_mos - INFO - Saved model in nrs_mos_with_bkgslits_masterbg2d.fits 2022-10-06 04:48:38,657 - stpipe.Spec2Pipeline.master_background_mos - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:48:38,658 - stpipe.Spec2Pipeline.master_background_mos - INFO - Step master_background_mos done 2022-10-06 04:48:39,245 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2022-10-06 04:48:39,247 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'} 2022-10-06 04:48:39,280 - stpipe.Spec2Pipeline.wavecorr - INFO - Using WAVECORR reference file /grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0004.asdf 2022-10-06 04:48:40,829 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 6 2022-10-06 04:48:40,829 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a POINT source type in slit 3 2022-10-06 04:48:40,830 - stpipe.Spec2Pipeline.wavecorr - INFO - slit name 3 2022-10-06 04:48:40,925 - stpipe.Spec2Pipeline.wavecorr - INFO - Using wavelength zero-point correction for aperture MOS 2022-10-06 04:48:40,931 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 4 2022-10-06 04:48:40,932 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 5 2022-10-06 04:48:40,932 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a POINT source type in slit 8 2022-10-06 04:48:40,932 - stpipe.Spec2Pipeline.wavecorr - INFO - slit name 8 2022-10-06 04:48:41,025 - stpipe.Spec2Pipeline.wavecorr - INFO - Using wavelength zero-point correction for aperture MOS 2022-10-06 04:48:41,029 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 10 2022-10-06 04:48:41,029 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 14 2022-10-06 04:48:41,030 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 16 2022-10-06 04:48:41,033 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr done 2022-10-06 04:48:41,671 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2022-10-06 04:48:41,673 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2022-10-06 04:48:51,468 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 6 2022-10-06 04:48:52,667 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 3 2022-10-06 04:48:56,003 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 4 2022-10-06 04:48:59,212 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 5 2022-10-06 04:49:04,285 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 8 2022-10-06 04:49:07,793 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 10 2022-10-06 04:49:10,928 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 14 2022-10-06 04:49:14,782 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 16 2022-10-06 04:49:19,097 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field done 2022-10-06 04:49:19,716 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2022-10-06 04:49:19,718 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None} 2022-10-06 04:49:19,756 - stpipe.Spec2Pipeline.pathloss - INFO - Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits 2022-10-06 04:49:19,825 - stpipe.Spec2Pipeline.pathloss - INFO - Input exposure type is NRS_MSASPEC 2022-10-06 04:49:21,425 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 0 2022-10-06 04:49:21,449 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 1 2022-10-06 04:49:21,472 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 2 2022-10-06 04:49:21,494 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 3 2022-10-06 04:49:21,520 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 4 2022-10-06 04:49:21,543 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 5 2022-10-06 04:49:21,566 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 6 2022-10-06 04:49:21,590 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 7 2022-10-06 04:49:21,618 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss done 2022-10-06 04:49:22,221 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2022-10-06 04:49:22,222 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None} 2022-10-06 04:49:22,258 - stpipe.Spec2Pipeline.barshadow - INFO - Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits 2022-10-06 04:49:23,814 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 6 2022-10-06 04:49:23,864 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 3 2022-10-06 04:49:23,876 - stpipe.Spec2Pipeline.barshadow - INFO - Bar shadow correction skipped for slitlet 3 (source not uniform) 2022-10-06 04:49:23,883 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 4 2022-10-06 04:49:23,979 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 5 2022-10-06 04:49:24,173 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 8 2022-10-06 04:49:24,187 - stpipe.Spec2Pipeline.barshadow - INFO - Bar shadow correction skipped for slitlet 8 (source not uniform) 2022-10-06 04:49:24,194 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 10 2022-10-06 04:49:24,290 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 14 2022-10-06 04:49:24,398 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 16 2022-10-06 04:49:24,516 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow done 2022-10-06 04:49:25,242 - stpipe.Spec2Pipeline.photom - INFO - Step photom running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2022-10-06 04:49:25,245 - stpipe.Spec2Pipeline.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None} 2022-10-06 04:49:25,310 - stpipe.Spec2Pipeline.photom - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits 2022-10-06 04:49:25,311 - stpipe.Spec2Pipeline.photom - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits 2022-10-06 04:49:26,807 - stpipe.Spec2Pipeline.photom - INFO - Using instrument: NIRSPEC 2022-10-06 04:49:26,807 - stpipe.Spec2Pipeline.photom - INFO - detector: NRS1 2022-10-06 04:49:26,807 - stpipe.Spec2Pipeline.photom - INFO - exp_type: NRS_MSASPEC 2022-10-06 04:49:26,807 - stpipe.Spec2Pipeline.photom - INFO - filter: F170LP 2022-10-06 04:49:26,807 - stpipe.Spec2Pipeline.photom - INFO - grating: G235M 2022-10-06 04:49:26,896 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 6 2022-10-06 04:49:26,897 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:49:26,906 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 3 2022-10-06 04:49:26,907 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 1 2022-10-06 04:49:26,917 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 4 2022-10-06 04:49:26,917 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:49:26,927 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 5 2022-10-06 04:49:26,927 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:49:26,938 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 8 2022-10-06 04:49:26,938 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 1 2022-10-06 04:49:26,948 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 10 2022-10-06 04:49:26,948 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:49:26,958 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 14 2022-10-06 04:49:26,958 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:49:26,969 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 16 2022-10-06 04:49:26,969 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:49:26,984 - stpipe.Spec2Pipeline.photom - INFO - Step photom done 2022-10-06 04:49:27,670 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec running with args (<MultiSlitModel from nrs_mos_with_bkgslits_cal.fits>,). 2022-10-06 04:49:27,672 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True} 2022-10-06 04:49:27,720 - stpipe.Spec2Pipeline.resample_spec - INFO - No DRIZPARS reffile 2022-10-06 04:49:27,722 - stpipe.Spec2Pipeline.resample_spec - INFO - using: pixfrac=1.0 2022-10-06 04:49:27,722 - stpipe.Spec2Pipeline.resample_spec - INFO - using: kernel='square' 2022-10-06 04:49:27,722 - stpipe.Spec2Pipeline.resample_spec - INFO - using: fillval='INDEF' 2022-10-06 04:49:27,722 - stpipe.Spec2Pipeline.resample_spec - INFO - using: wht_type='ivm' 2022-10-06 04:49:27,722 - stpipe.Spec2Pipeline.resample_spec - INFO - using: pscale_ratio=1.0 2022-10-06 04:49:27,722 - stpipe.Spec2Pipeline.resample_spec - INFO - Reorganizing data from exposure nrs_mos_with_bkgslits_cal.fits 2022-10-06 04:49:29,294 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter kernal: square 2022-10-06 04:49:29,294 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter pixfrac: 1.0 2022-10-06 04:49:29,294 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter fillval: INDEF 2022-10-06 04:49:29,294 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter weight_type: ivm 2022-10-06 04:49:29,471 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2022-10-06 04:49:29,515 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (19, 275) --> (16, 275) 2022-10-06 04:49:29,516 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2022-10-06 04:49:29,561 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (19, 275) --> (16, 275) 2022-10-06 04:49:29,564 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2022-10-06 04:49:29,607 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (19, 275) --> (16, 275) 2022-10-06 04:49:29,610 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2022-10-06 04:49:29,653 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (19, 275) --> (16, 275) 2022-10-06 04:49:29,681 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.158246078 -27.801207374 53.171030520 -27.801207374 53.171030520 -27.791100221 53.158246078 -27.791100221 2022-10-06 04:49:29,971 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter kernal: square 2022-10-06 04:49:29,971 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter pixfrac: 1.0 2022-10-06 04:49:29,971 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter fillval: INDEF 2022-10-06 04:49:29,972 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter weight_type: ivm 2022-10-06 04:49:30,154 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2022-10-06 04:49:30,210 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (22, 842) --> (17, 842) 2022-10-06 04:49:30,213 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2022-10-06 04:49:30,267 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (22, 842) --> (17, 842) 2022-10-06 04:49:30,271 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2022-10-06 04:49:30,324 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (22, 842) --> (17, 842) 2022-10-06 04:49:30,328 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2022-10-06 04:49:30,382 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (22, 842) --> (17, 842) 2022-10-06 04:49:30,417 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.123683773 -27.838204147 53.162357841 -27.838204147 53.162357841 -27.807387296 53.123683773 -27.807387296 2022-10-06 04:49:31,376 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter kernal: square 2022-10-06 04:49:31,376 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter pixfrac: 1.0 2022-10-06 04:49:31,376 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter fillval: INDEF 2022-10-06 04:49:31,376 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter weight_type: ivm 2022-10-06 04:49:31,564 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2022-10-06 04:49:31,621 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (22, 781) --> (17, 781) 2022-10-06 04:49:31,624 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2022-10-06 04:49:31,678 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (22, 781) --> (17, 781) 2022-10-06 04:49:31,682 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2022-10-06 04:49:31,733 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (22, 781) --> (17, 781) 2022-10-06 04:49:31,738 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2022-10-06 04:49:31,789 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (22, 781) --> (17, 781) 2022-10-06 04:49:31,822 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.136786697 -27.844574508 53.172768219 -27.844574508 53.172768219 -27.815903465 53.136786697 -27.815903465 2022-10-06 04:49:32,189 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter kernal: square 2022-10-06 04:49:32,189 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter pixfrac: 1.0 2022-10-06 04:49:32,189 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter fillval: INDEF 2022-10-06 04:49:32,190 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter weight_type: ivm 2022-10-06 04:49:32,380 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2022-10-06 04:49:32,456 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (27, 1279) --> (17, 1279) 2022-10-06 04:49:32,460 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2022-10-06 04:49:32,544 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (27, 1279) --> (17, 1279) 2022-10-06 04:49:32,552 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2022-10-06 04:49:32,648 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (27, 1279) --> (17, 1279) 2022-10-06 04:49:32,657 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2022-10-06 04:49:32,752 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (27, 1279) --> (17, 1279) 2022-10-06 04:49:32,798 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.098753934 -27.869721036 53.157714961 -27.869721036 53.157714961 -27.822404837 53.098753934 -27.822404837 2022-10-06 04:49:33,171 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter kernal: square 2022-10-06 04:49:33,171 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter pixfrac: 1.0 2022-10-06 04:49:33,171 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter fillval: INDEF 2022-10-06 04:49:33,172 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter weight_type: ivm 2022-10-06 04:49:33,342 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2022-10-06 04:49:33,389 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (22, 641) --> (17, 641) 2022-10-06 04:49:33,391 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2022-10-06 04:49:33,438 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (22, 641) --> (17, 641) 2022-10-06 04:49:33,442 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2022-10-06 04:49:33,488 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (22, 641) --> (17, 641) 2022-10-06 04:49:33,492 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2022-10-06 04:49:33,536 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (22, 641) --> (17, 641) 2022-10-06 04:49:33,567 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.145560816 -27.835548815 53.175125632 -27.835548815 53.175125632 -27.812051414 53.145560816 -27.812051414 2022-10-06 04:49:33,849 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter kernal: square 2022-10-06 04:49:33,849 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter pixfrac: 1.0 2022-10-06 04:49:33,849 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter fillval: INDEF 2022-10-06 04:49:33,849 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter weight_type: ivm 2022-10-06 04:49:34,032 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2022-10-06 04:49:34,087 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (22, 782) --> (17, 782) 2022-10-06 04:49:34,089 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2022-10-06 04:49:34,144 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (22, 782) --> (17, 782) 2022-10-06 04:49:34,149 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2022-10-06 04:49:34,199 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (22, 782) --> (17, 782) 2022-10-06 04:49:34,203 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2022-10-06 04:49:34,252 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (22, 782) --> (17, 782) 2022-10-06 04:49:34,285 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.125376182 -27.832054342 53.161275561 -27.832054342 53.161275561 -27.803486876 53.125376182 -27.803486876 2022-10-06 04:49:34,587 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter kernal: square 2022-10-06 04:49:34,587 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter pixfrac: 1.0 2022-10-06 04:49:34,587 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter fillval: INDEF 2022-10-06 04:49:34,587 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter weight_type: ivm 2022-10-06 04:49:34,771 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2022-10-06 04:49:34,826 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (24, 978) --> (17, 978) 2022-10-06 04:49:34,830 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2022-10-06 04:49:34,885 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (24, 978) --> (17, 978) 2022-10-06 04:49:34,890 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2022-10-06 04:49:34,946 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (24, 978) --> (17, 978) 2022-10-06 04:49:34,952 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2022-10-06 04:49:35,714 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (24, 978) --> (17, 978) 2022-10-06 04:49:35,748 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.123860814 -27.856766763 53.168909965 -27.856766763 53.168909965 -27.820747374 53.123860814 -27.820747374 2022-10-06 04:49:36,058 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter kernal: square 2022-10-06 04:49:36,059 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter pixfrac: 1.0 2022-10-06 04:49:36,059 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter fillval: INDEF 2022-10-06 04:49:36,059 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter weight_type: ivm 2022-10-06 04:49:36,255 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2022-10-06 04:49:36,315 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (24, 1012) --> (17, 1012) 2022-10-06 04:49:36,319 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2022-10-06 04:49:36,378 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (24, 1012) --> (17, 1012) 2022-10-06 04:49:36,383 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2022-10-06 04:49:36,442 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (24, 1012) --> (17, 1012) 2022-10-06 04:49:36,447 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2022-10-06 04:49:36,509 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (24, 1012) --> (17, 1012) 2022-10-06 04:49:36,544 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.122178099 -27.859535791 53.168806624 -27.859535791 53.168806624 -27.822230934 53.122178099 -27.822230934 2022-10-06 04:49:38,480 - stpipe.Spec2Pipeline.resample_spec - INFO - Saved model in nrs_mos_with_bkgslits_s2d.fits 2022-10-06 04:49:38,480 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec done 2022-10-06 04:49:39,155 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d running with args (<MultiSlitModel from nrs_mos_with_bkgslits_s2d.fits>,). 2022-10-06 04:49:39,157 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None} 2022-10-06 04:49:39,235 - stpipe.Spec2Pipeline.extract_1d - INFO - Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json 2022-10-06 04:49:39,263 - stpipe.Spec2Pipeline.extract_1d - INFO - Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits 2022-10-06 04:49:39,312 - stpipe.Spec2Pipeline.extract_1d - INFO - Turning on source position correction for exp_type = NRS_MSASPEC 2022-10-06 04:49:39,312 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 6 2022-10-06 04:49:39,313 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2022-10-06 04:49:39,323 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: xstart=0, xstop=274, ystart=4.0, ystop=11.0 2022-10-06 04:49:39,429 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 3 2022-10-06 04:49:39,482 - stpipe.Spec2Pipeline.extract_1d - WARNING - WCS implies the target is at -424.46, which is outside the bounding box, 2022-10-06 04:49:39,482 - stpipe.Spec2Pipeline.extract_1d - WARNING - so we can't get spectrum location using the WCS 2022-10-06 04:49:39,483 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: xstart=0, xstop=841, ystart=4.5, ystop=11.5 2022-10-06 04:49:39,655 - stpipe.Spec2Pipeline.extract_1d - INFO - Applying Aperture correction. 2022-10-06 04:49:41,029 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 4 2022-10-06 04:49:41,029 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2022-10-06 04:49:41,044 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: xstart=0, xstop=780, ystart=4.5, ystop=11.5 2022-10-06 04:49:41,237 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 5 2022-10-06 04:49:41,238 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2022-10-06 04:49:41,260 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: xstart=0, xstop=1278, ystart=4.5, ystop=11.5 2022-10-06 04:49:41,592 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 8 2022-10-06 04:49:41,675 - stpipe.Spec2Pipeline.extract_1d - WARNING - WCS implies the target is at -1002.91, which is outside the bounding box, 2022-10-06 04:49:41,675 - stpipe.Spec2Pipeline.extract_1d - WARNING - so we can't get spectrum location using the WCS 2022-10-06 04:49:41,677 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: xstart=0, xstop=640, ystart=4.5, ystop=11.5 2022-10-06 04:49:41,908 - stpipe.Spec2Pipeline.extract_1d - INFO - Applying Aperture correction. 2022-10-06 04:49:42,963 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 10 2022-10-06 04:49:42,963 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2022-10-06 04:49:42,977 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: xstart=0, xstop=781, ystart=4.5, ystop=11.5 2022-10-06 04:49:43,144 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 14 2022-10-06 04:49:43,145 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2022-10-06 04:49:43,160 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: xstart=0, xstop=977, ystart=4.5, ystop=11.5 2022-10-06 04:49:43,355 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 16 2022-10-06 04:49:43,355 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2022-10-06 04:49:43,371 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: xstart=0, xstop=1011, ystart=4.5, ystop=11.5 2022-10-06 04:49:43,895 - stpipe.Spec2Pipeline.extract_1d - INFO - Saved model in nrs_mos_with_bkgslits_x1d.fits 2022-10-06 04:49:43,895 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d done 2022-10-06 04:49:43,896 - stpipe.Spec2Pipeline - INFO - Finished processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits 2022-10-06 04:49:43,896 - stpipe.Spec2Pipeline - INFO - Ending calwebb_spec2 2022-10-06 04:49:43,896 - stpipe.Spec2Pipeline - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:49:46,906 - stpipe.Spec2Pipeline - INFO - Saved model in nrs_mos_with_bkgslits_cal.fits 2022-10-06 04:49:46,906 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline done -------------------------------Captured log setup------------------------------- INFO stpipe.Spec2Pipeline:step.py:366 Spec2Pipeline instance created. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:366 BackgroundStep instance created. INFO stpipe.Spec2Pipeline.assign_wcs:step.py:366 AssignWcsStep instance created. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:366 ImprintStep instance created. INFO stpipe.Spec2Pipeline.msa_flagging:step.py:366 MSAFlagOpenStep instance created. INFO stpipe.Spec2Pipeline.extract_2d:step.py:366 Extract2dStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos:step.py:366 MasterBackgroundMosStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:step.py:366 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:step.py:366 PathLossStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:step.py:366 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.photom:step.py:366 PhotomStep instance created. INFO stpipe.Spec2Pipeline.wavecorr:step.py:366 WavecorrStep instance created. INFO stpipe.Spec2Pipeline.flat_field:step.py:366 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.srctype:step.py:366 SourceTypeStep instance created. INFO stpipe.Spec2Pipeline.straylight:step.py:366 StraylightStep instance created. INFO stpipe.Spec2Pipeline.fringe:step.py:366 FringeStep instance created. INFO stpipe.Spec2Pipeline.pathloss:step.py:366 PathLossStep instance created. INFO stpipe.Spec2Pipeline.barshadow:step.py:366 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.wfss_contam:step.py:366 WfssContamStep instance created. INFO stpipe.Spec2Pipeline.photom:step.py:366 PhotomStep instance created. INFO stpipe.Spec2Pipeline.resample_spec:step.py:366 ResampleSpecStep instance created. INFO stpipe.Spec2Pipeline.cube_build:step.py:366 CubeBuildStep instance created. INFO stpipe.Spec2Pipeline.extract_1d:step.py:366 Extract1dStep instance created. INFO stpipe.Spec2Pipeline:step.py:430 Step Spec2Pipeline running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits_rate.fits',). INFO stpipe.Spec2Pipeline:step.py:434 Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_bsub': False, 'fail_on_exception': True, 'save_wfss_esec': False, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000}, 'master_background_mos': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'force_subtract': False, 'save_background': True, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'source_type': None}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'wfss_contam': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_simulated_image': False, 'save_contam_images': False, 'maximum_cores': 'none'}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'drizzle', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None}}} INFO stpipe.Spec2Pipeline:pipeline.py:358 Prefetching reference files for dataset: 'nrs_mos_with_bkgslits_rate.fits' reftypes = ['apcorr', 'area', 'barshadow', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'mrsxartcorr', 'msa', 'msaoper', 'ote', 'pathloss', 'photom', 'regions', 'sflat', 'speckernel', 'specprofile', 'spectrace', 'specwcs', 'wavecorr', 'wavelengthrange', 'wavemap', 'wfssbkg'] INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for BARSHADOW reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for CUBEPAR reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DISTORTION reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DRIZPARS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FILTEROFFSET reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FLAT reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FRINGE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for IFUFORE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for IFUPOST reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for IFUSLICER reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for MRSXARTCORR reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for REGIONS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECKERNEL reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECPROFILE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECTRACE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECWCS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WAVEMAP reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WFSSBKG reference file is 'N/A'. INFO stpipe.Spec2Pipeline:calwebb_spec2.py:92 Starting calwebb_spec2 ... INFO stpipe.Spec2Pipeline:calwebb_spec2.py:110 Processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits INFO stpipe.Spec2Pipeline:calwebb_spec2.py:176 Working on input /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits_rate.fits ... DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:347 Science data does not allow direct background subtraction. Skipping "bkg_subtract". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:359 Science data does not allow imprint processing. Skipping "imprint_subtraction". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:370 Science data does not allow stray light correction. Skipping "straylight". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:375 Science data does not allow fringe correction. Skipping "fringe". INFO stpipe.Spec2Pipeline.assign_wcs:step.py:430 Step assign_wcs running with args (<ImageModel(2048, 2048) from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.assign_wcs:step.py:434 Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:80 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:80 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.Spec2Pipeline.assign_wcs:nirspec.py:605 msa_data with msa_metadata_id = 1 [(3, 1, 3, 108, 121, 35, 'Y', 'OPEN', nan, nan, 1, 'N'), (3, 1, 3, 108, 122, 35, 'N', 'OPEN', 0.47603804, 0.29847124, 1, 'Y'), (3, 1, 3, 108, 123, 35, 'Y', 'OPEN', nan, nan, 1, 'N'), (4, 1, 3, 91, 37, 29, 'Y', 'OPEN', nan, nan, 1, 'N'), (4, 1, 3, 91, 38, 29, 'N', 'OPEN', 0.48960054, 0.63718337, 1, 'Y'), (4, 1, 3, 91, 39, 29, 'Y', 'OPEN', nan, nan, 1, 'N'), (5, 1, 3, 282, 64, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (5, 1, 3, 282, 65, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (5, 1, 3, 282, 66, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (6, 1, 1, 336, 169, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (6, 1, 1, 336, 170, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (6, 1, 1, 336, 171, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (8, 1, 3, 36, 47, 15, 'Y', 'OPEN', nan, nan, 1, 'N'), (8, 1, 3, 36, 48, 15, 'N', 'OPEN', 0.3641984, 0.17683797, 1, 'Y'), (8, 1, 3, 36, 49, 15, 'Y', 'OPEN', nan, nan, 1, 'N'), (10, 1, 3, 83, 145, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (10, 1, 3, 83, 146, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (10, 1, 3, 83, 147, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (14, 1, 3, 168, 28, 6, 'Y', 'OPEN', nan, nan, 1, 'N'), (14, 1, 3, 168, 29, 6, 'N', 'OPEN', 0.4311356, 0.19721484, 1, 'Y'), (14, 1, 3, 168, 30, 31, 'N', 'OPEN', 0.69895035, 0.5455596, 1, 'N'), (16, 1, 3, 182, 21, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (16, 1, 3, 182, 22, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (16, 1, 3, 182, 23, 0, 'Y', 'OPEN', nan, nan, 1, 'N')] DEBUG stpipe.Spec2Pipeline.assign_wcs:nirspec.py:605 msa_data with msa_metadata_id = 1 [(3, 1, 3, 108, 121, 35, 'Y', 'OPEN', nan, nan, 1, 'N'), (3, 1, 3, 108, 122, 35, 'N', 'OPEN', 0.47603804, 0.29847124, 1, 'Y'), (3, 1, 3, 108, 123, 35, 'Y', 'OPEN', nan, nan, 1, 'N'), (4, 1, 3, 91, 37, 29, 'Y', 'OPEN', nan, nan, 1, 'N'), (4, 1, 3, 91, 38, 29, 'N', 'OPEN', 0.48960054, 0.63718337, 1, 'Y'), (4, 1, 3, 91, 39, 29, 'Y', 'OPEN', nan, nan, 1, 'N'), (5, 1, 3, 282, 64, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (5, 1, 3, 282, 65, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (5, 1, 3, 282, 66, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (6, 1, 1, 336, 169, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (6, 1, 1, 336, 170, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (6, 1, 1, 336, 171, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (8, 1, 3, 36, 47, 15, 'Y', 'OPEN', nan, nan, 1, 'N'), (8, 1, 3, 36, 48, 15, 'N', 'OPEN', 0.3641984, 0.17683797, 1, 'Y'), (8, 1, 3, 36, 49, 15, 'Y', 'OPEN', nan, nan, 1, 'N'), (10, 1, 3, 83, 145, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (10, 1, 3, 83, 146, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (10, 1, 3, 83, 147, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (14, 1, 3, 168, 28, 6, 'Y', 'OPEN', nan, nan, 1, 'N'), (14, 1, 3, 168, 29, 6, 'N', 'OPEN', 0.4311356, 0.19721484, 1, 'Y'), (14, 1, 3, 168, 30, 31, 'N', 'OPEN', 0.69895035, 0.5455596, 1, 'N'), (16, 1, 3, 182, 21, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (16, 1, 3, 182, 22, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (16, 1, 3, 182, 23, 0, 'Y', 'OPEN', nan, nan, 1, 'N')] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:606 Retrieving open MSA slitlets for msa_metadata_id = 1 and dither_index = 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:606 Retrieving open MSA slitlets for msa_metadata_id = 1 and dither_index = 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:646 Slitlet_id 5 is background only; assigned source_id = 36 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:646 Slitlet_id 5 is background only; assigned source_id = 36 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:646 Slitlet_id 6 is background only; assigned source_id = 37 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:646 Slitlet_id 6 is background only; assigned source_id = 37 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:646 Slitlet_id 10 is background only; assigned source_id = 38 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:646 Slitlet_id 10 is background only; assigned source_id = 38 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:646 Slitlet_id 16 is background only; assigned source_id = 39 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:646 Slitlet_id 16 is background only; assigned source_id = 39 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1375 gwa_ytilt is 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1375 gwa_ytilt is 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1376 gwa_xtilt is 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1376 gwa_xtilt is 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1380 theta_y correction: 0.3763368051194907 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1380 theta_y correction: 0.3763368051194907 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:424 Slits projected on detector NRS1: [3, 4, 5, 6, 8, 10, 14, 16] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:424 Slits projected on detector NRS1: [3, 4, 5, 6, 8, 10, 14, 16] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:308 Computing WCS for 8 open slitlets INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:308 Computing WCS for 8 open slitlets INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1375 gwa_ytilt is 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1375 gwa_ytilt is 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1376 gwa_xtilt is 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1376 gwa_xtilt is 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1380 theta_y correction: 0.3763368051194907 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1380 theta_y correction: 0.3763368051194907 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:330 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:330 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 1 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 1 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 7 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 7 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 5 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 5 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:62 Created a NIRSPEC nrs_msaspec pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None, 'msametafile': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits_msa.fits'} INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:62 Created a NIRSPEC nrs_msaspec pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None, 'msametafile': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits_msa.fits'} INFO stpipe.Spec2Pipeline.assign_wcs:assign_wcs.py:96 COMPLETED assign_wcs INFO stpipe.Spec2Pipeline.assign_wcs:assign_wcs.py:96 COMPLETED assign_wcs INFO stpipe.Spec2Pipeline.assign_wcs:step.py:546 Step assign_wcs done INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:430 Step bkg_subtract running with args (<ImageModel(2048, 2048) from nrs_mos_with_bkgslits_rate.fits>, []). INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:434 Step bkg_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None} INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:546 Step bkg_subtract done INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:430 Step imprint_subtract running with args (<ImageModel(2048, 2048) from nrs_mos_with_bkgslits_rate.fits>, []). INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:434 Step imprint_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'} INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:546 Step imprint_subtract done INFO stpipe.Spec2Pipeline.msa_flagging:step.py:430 Step msa_flagging running with args (<ImageModel(2048, 2048) from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.msa_flagging:step.py:434 Step msa_flagging parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'} INFO stpipe.Spec2Pipeline.msa_flagging:msaflagopen_step.py:27 Using reference file /grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json INFO stpipe.JwstStep:step.py:366 JwstStep instance created. INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1375 gwa_ytilt is 0.0 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1375 gwa_ytilt is 0.0 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1376 gwa_xtilt is 0.0 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1376 gwa_xtilt is 0.0 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1380 theta_y correction: 0.3763368051194907 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1380 theta_y correction: 0.3763368051194907 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:330 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:330 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1020 There are 5 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1020 There are 5 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1020 There are 3 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1020 There are 3 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1020 There are 9 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1020 There are 9 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1020 There are 3 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1020 There are 3 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1020 There are 0 open slits in quadrant 5 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1020 There are 0 open slits in quadrant 5 INFO stpipe.Spec2Pipeline.msa_flagging:step.py:546 Step msa_flagging done INFO stpipe.Spec2Pipeline.extract_2d:step.py:430 Step extract_2d running with args (<ImageModel(2048, 2048) from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.extract_2d:step.py:434 Step extract_2d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000} INFO stpipe.Spec2Pipeline.extract_2d:extract_2d.py:61 EXP_TYPE is NRS_MSASPEC INFO stpipe.Spec2Pipeline.extract_2d:extract_2d.py:61 EXP_TYPE is NRS_MSASPEC INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 6 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 6 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1773 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1773 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1183 1202 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1183 1202 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -1.75 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -1.75 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 53.171079994 -27.791417317 53.170747333 -27.791086613 53.170701749 -27.791122314 53.171034405 -27.791453023 INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 53.171079994 -27.791417317 53.170747333 -27.791086613 53.170701749 -27.791122314 53.171034405 -27.791453023 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.171079994 -27.791417317 53.170747333 -27.791086613 53.170701749 -27.791122314 53.171034405 -27.791453023 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.171079994 -27.791417317 53.170747333 -27.791086613 53.170701749 -27.791122314 53.171034405 -27.791453023 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 3 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 3 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1206 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1206 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1423 1445 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1423 1445 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -1.75 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -1.75 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 53.162391167 -27.807712378 53.162058690 -27.807378878 53.162013132 -27.807414788 53.162345604 -27.807748292 INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 53.162391167 -27.807712378 53.162058690 -27.807378878 53.162013132 -27.807414788 53.162345604 -27.807748292 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.162391167 -27.807712378 53.162058690 -27.807378878 53.162013132 -27.807414788 53.162345604 -27.807748292 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.162391167 -27.807712378 53.162058690 -27.807378878 53.162013132 -27.807414788 53.162345604 -27.807748292 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 4 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 4 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1267 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1267 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1843 1865 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1843 1865 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -1.75 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -1.75 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 53.172801385 -27.816231603 53.172466245 -27.815895667 53.172420535 -27.815931690 53.172755669 -27.816267630 INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 53.172801385 -27.816231603 53.172466245 -27.815895667 53.172420535 -27.815931690 53.172755669 -27.816267630 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.172801385 -27.816231603 53.172466245 -27.815895667 53.172420535 -27.815931690 53.172755669 -27.816267630 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.172801385 -27.816231603 53.172466245 -27.815895667 53.172420535 -27.815931690 53.172755669 -27.816267630 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 5 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 5 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 769 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 769 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1706 1733 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1706 1733 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -1.75 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -1.75 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 53.157748079 -27.822733115 53.157415101 -27.822396771 53.157369476 -27.822432937 53.157702450 -27.822769286 INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 53.157748079 -27.822733115 53.157415101 -27.822396771 53.157369476 -27.822432937 53.157702450 -27.822769286 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.157748079 -27.822733115 53.157415101 -27.822396771 53.157369476 -27.822432937 53.157702450 -27.822769286 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.157748079 -27.822733115 53.157415101 -27.822396771 53.157369476 -27.822432937 53.157702450 -27.822769286 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 8 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 8 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1407 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1407 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1793 1815 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1793 1815 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -1.75 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -1.75 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 53.175158841 -27.812378836 53.174823590 -27.812043546 53.174777873 -27.812079509 53.175113118 -27.812414803 INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 53.175158841 -27.812378836 53.174823590 -27.812043546 53.174777873 -27.812079509 53.175113118 -27.812414803 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.175158841 -27.812378836 53.174823590 -27.812043546 53.174777873 -27.812079509 53.175113118 -27.812414803 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.175158841 -27.812378836 53.174823590 -27.812043546 53.174777873 -27.812079509 53.175113118 -27.812414803 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 10 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 10 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1266 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1266 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1303 1325 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1303 1325 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -1.75 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -1.75 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 53.161308961 -27.803810891 53.160977035 -27.803478276 53.160931508 -27.803514129 53.161263430 -27.803846749 INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 53.161308961 -27.803810891 53.160977035 -27.803478276 53.160931508 -27.803514129 53.161263430 -27.803846749 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.161308961 -27.803810891 53.160977035 -27.803478276 53.160931508 -27.803514129 53.161263430 -27.803846749 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.161308961 -27.803810891 53.160977035 -27.803478276 53.160931508 -27.803514129 53.161263430 -27.803846749 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 14 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 14 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1070 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1070 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1887 1911 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1887 1911 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -1.75 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -1.75 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 53.168943086 -27.821076314 53.168608247 -27.820739620 53.168562546 -27.820775726 53.168897379 -27.821112425 INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 53.168943086 -27.821076314 53.168608247 -27.820739620 53.168562546 -27.820775726 53.168897379 -27.821112425 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.168943086 -27.821076314 53.168608247 -27.820739620 53.168562546 -27.820775726 53.168897379 -27.821112425 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.168943086 -27.821076314 53.168608247 -27.820739620 53.168562546 -27.820775726 53.168897379 -27.821112425 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 16 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 16 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1036 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1036 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1922 1946 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1922 1946 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -1.75 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -1.75 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 53.168839729 -27.822560211 53.168504787 -27.822223220 53.168459077 -27.822259350 53.168794014 -27.822596346 INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 53.168839729 -27.822560211 53.168504787 -27.822223220 53.168459077 -27.822259350 53.168794014 -27.822596346 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.168839729 -27.822560211 53.168504787 -27.822223220 53.168459077 -27.822259350 53.168794014 -27.822596346 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.168839729 -27.822560211 53.168504787 -27.822223220 53.168459077 -27.822259350 53.168794014 -27.822596346 INFO stpipe.Spec2Pipeline.extract_2d:step.py:546 Step extract_2d done INFO stpipe.Spec2Pipeline.srctype:step.py:430 Step srctype running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.srctype:step.py:434 Step srctype parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'source_type': None} INFO stpipe.Spec2Pipeline.srctype:srctype.py:39 Input EXP_TYPE is NRS_MSASPEC INFO stpipe.Spec2Pipeline.srctype:srctype.py:39 Input EXP_TYPE is NRS_MSASPEC INFO stpipe.Spec2Pipeline.srctype:srctype.py:164 source_id=37, stellarity=0.0000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:164 source_id=37, stellarity=0.0000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:164 source_id=35, stellarity=0.9200, type=POINT INFO stpipe.Spec2Pipeline.srctype:srctype.py:164 source_id=35, stellarity=0.9200, type=POINT INFO stpipe.Spec2Pipeline.srctype:srctype.py:164 source_id=29, stellarity=0.1500, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:164 source_id=29, stellarity=0.1500, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:164 source_id=36, stellarity=0.0000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:164 source_id=36, stellarity=0.0000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:164 source_id=15, stellarity=0.8200, type=POINT INFO stpipe.Spec2Pipeline.srctype:srctype.py:164 source_id=15, stellarity=0.8200, type=POINT INFO stpipe.Spec2Pipeline.srctype:srctype.py:164 source_id=38, stellarity=0.0000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:164 source_id=38, stellarity=0.0000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:164 source_id=6, stellarity=0.4800, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:164 source_id=6, stellarity=0.4800, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:164 source_id=39, stellarity=0.0000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:164 source_id=39, stellarity=0.0000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:step.py:546 Step srctype done INFO stpipe.Spec2Pipeline.master_background_mos:step.py:430 Step master_background_mos running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background_mos:step.py:434 Step master_background_mos parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'force_subtract': False, 'save_background': True, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}}} INFO stpipe.Spec2Pipeline.master_background_mos:master_background_mos_step.py:132 Calculating master background INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:step.py:430 Step flat_field running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:step.py:434 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field_step.py:74 Input is MultiSlitModel of exposure type NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field_step.py:201 No reference found for type FLAT DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field_step.py:199 Using FFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field_step.py:199 Using SFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field_step.py:199 Using DFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 6 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 6 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 1100 out of 5225 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 1100 out of 5225 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:2010 1 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:2010 1 flat-field values <= 0 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 3 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 3 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 5865 out of 18524 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 5865 out of 18524 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:2010 14 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:2010 14 flat-field values <= 0 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 4 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 4 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 5471 out of 17182 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 5471 out of 17182 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:2010 14 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:2010 14 flat-field values <= 0 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 5 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 5 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 15337 out of 34533 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 15337 out of 34533 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:2010 18 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:2010 18 flat-field values <= 0 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 8 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 8 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 4488 out of 14102 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 4488 out of 14102 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:2010 7 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:2010 7 flat-field values <= 0 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 10 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 10 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 5434 out of 17204 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 5434 out of 17204 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:2010 8 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:2010 8 flat-field values <= 0 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 14 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 14 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 8810 out of 23472 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 8810 out of 23472 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:2010 7 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:2010 7 flat-field values <= 0 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 16 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 16 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 9118 out of 24288 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 9118 out of 24288 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:2010 16 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:2010 16 flat-field values <= 0 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:step.py:546 Step flat_field done INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:step.py:430 Step pathloss running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:step.py:434 Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': 'EXTENDED'} INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss_step.py:38 Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:232 Input exposure type is NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:232 Input exposure type is NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 0 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 0 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 1 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 1 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 2 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 2 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 3 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 3 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 4 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 4 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 5 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 5 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 6 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 6 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 7 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 7 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:step.py:546 Step pathloss done INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:step.py:430 Step barshadow running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:step.py:434 Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': 'EXTENDED'} INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:barshadow_step.py:58 Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits DEBUG stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 6 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 6 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 5 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 5 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 14 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 14 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 16 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 16 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:step.py:546 Step barshadow done INFO stpipe.Spec2Pipeline.master_background_mos.photom:step.py:430 Step photom running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background_mos.photom:step.py:434 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': 'EXTENDED'} DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom_step.py:35 Input is MultiSlitModel INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom_step.py:55 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom_step.py:56 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:144 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:144 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:145 detector: NRS1 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:145 detector: NRS1 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:146 exp_type: NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:146 exp_type: NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:148 filter: F170LP INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:148 filter: F170LP INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:152 grating: G235M INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:152 grating: G235M INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 6 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 6 DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 3 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 3 DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 4 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 4 DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 5 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 5 DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 8 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 8 DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 10 DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 14 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 14 DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 16 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 16 DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:step.py:546 Step photom done DEBUG stpipe.Spec2Pipeline.master_background_mos:master_background_mos_step.py:246 Calculating 1D master background INFO stpipe.Spec2Pipeline.master_background_mos:nirspec_utils.py:97 Creating MOS master background from background slitlets INFO stpipe.Spec2Pipeline.master_background_mos:nirspec_utils.py:97 Creating MOS master background from background slitlets INFO stpipe.Spec2Pipeline.master_background_mos:nirspec_utils.py:105 Using background slitlet background_6 INFO stpipe.Spec2Pipeline.master_background_mos:nirspec_utils.py:105 Using background slitlet background_6 INFO stpipe.Spec2Pipeline.master_background_mos:nirspec_utils.py:105 Using background slitlet background_5 INFO stpipe.Spec2Pipeline.master_background_mos:nirspec_utils.py:105 Using background slitlet background_5 INFO stpipe.Spec2Pipeline.master_background_mos:nirspec_utils.py:105 Using background slitlet background_10 INFO stpipe.Spec2Pipeline.master_background_mos:nirspec_utils.py:105 Using background slitlet background_10 INFO stpipe.Spec2Pipeline.master_background_mos:nirspec_utils.py:105 Using background slitlet background_16 INFO stpipe.Spec2Pipeline.master_background_mos:nirspec_utils.py:105 Using background slitlet background_16 INFO stpipe.Spec2Pipeline.master_background_mos:nirspec_utils.py:115 Applying resampling and 1D extraction to background slits INFO stpipe.Spec2Pipeline.master_background_mos:nirspec_utils.py:115 Applying resampling and 1D extraction to background slits DEBUG stpipe.Spec2Pipeline.master_background_mos:step.py:862 Retrieving step PARS-RESAMPLESPECSTEP parameters from CRDS DEBUG stpipe.Spec2Pipeline.master_background_mos:step.py:883 No PARS-RESAMPLESPECSTEP reference files found. INFO stpipe.ResampleSpecStep:step.py:366 ResampleSpecStep instance created. INFO stpipe.ResampleSpecStep:step.py:430 Step ResampleSpecStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.ResampleSpecStep:step.py:434 Step ResampleSpecStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True} INFO stpipe.ResampleSpecStep:resample_spec_step.py:60 No DRIZPARS reffile INFO stpipe.ResampleSpecStep:resample_step.py:257 using: pixfrac=1.0 INFO stpipe.ResampleSpecStep:resample_step.py:257 using: pixfrac=1.0 INFO stpipe.ResampleSpecStep:resample_step.py:257 using: kernel='square' INFO stpipe.ResampleSpecStep:resample_step.py:257 using: kernel='square' INFO stpipe.ResampleSpecStep:resample_step.py:257 using: fillval='INDEF' INFO stpipe.ResampleSpecStep:resample_step.py:257 using: fillval='INDEF' INFO stpipe.ResampleSpecStep:resample_step.py:257 using: wht_type='ivm' INFO stpipe.ResampleSpecStep:resample_step.py:257 using: wht_type='ivm' INFO stpipe.ResampleSpecStep:resample_step.py:257 using: pscale_ratio=1.0 INFO stpipe.ResampleSpecStep:resample_step.py:257 using: pscale_ratio=1.0 INFO stpipe.ResampleSpecStep:exp_to_source.py:37 Reorganizing data from exposure nrs_mos_with_bkgslits_rate.fits INFO stpipe.ResampleSpecStep:exp_to_source.py:37 Reorganizing data from exposure nrs_mos_with_bkgslits_rate.fits DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 37 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 37 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 36 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 36 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 38 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 38 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 39 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 39 INFO stpipe.ResampleSpecStep:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.ResampleSpecStep:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.ResampleSpecStep:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.ResampleSpecStep:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.ResampleSpecStep:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.ResampleSpecStep:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.ResampleSpecStep:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.ResampleSpecStep:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.ResampleSpecStep:resample.py:210 Resampling science data INFO stpipe.ResampleSpecStep:resample.py:210 Resampling science data DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 18.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 18.5)) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (19, 275) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (19, 275) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (19, 275) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (19, 275) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (16, 275) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (16, 275) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (19, 275) --> (16, 275) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (19, 275) --> (16, 275) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_rnoise INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_rnoise DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 18.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 18.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (19, 275) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (19, 275) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (19, 275) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (19, 275) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (16, 275) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (16, 275) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (19, 275) --> (16, 275) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (19, 275) --> (16, 275) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_poisson INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_poisson DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 18.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 18.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (19, 275) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (19, 275) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (19, 275) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (19, 275) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (16, 275) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (16, 275) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (19, 275) --> (16, 275) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (19, 275) --> (16, 275) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_flat INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_flat DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 18.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 18.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (19, 275) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (19, 275) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (19, 275) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (19, 275) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (16, 275) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (16, 275) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (19, 275) --> (16, 275) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (19, 275) --> (16, 275) INFO stpipe.ResampleSpecStep:util.py:1060 Update S_REGION to POLYGON ICRS 53.158246078 -27.801207374 53.171030520 -27.801207374 53.171030520 -27.791100221 53.158246078 -27.791100221 INFO stpipe.ResampleSpecStep:util.py:1060 Update S_REGION to POLYGON ICRS 53.158246078 -27.801207374 53.171030520 -27.801207374 53.171030520 -27.791100221 53.158246078 -27.791100221 INFO stpipe.ResampleSpecStep:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.ResampleSpecStep:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.ResampleSpecStep:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.ResampleSpecStep:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.ResampleSpecStep:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.ResampleSpecStep:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.ResampleSpecStep:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.ResampleSpecStep:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.ResampleSpecStep:resample.py:210 Resampling science data INFO stpipe.ResampleSpecStep:resample.py:210 Resampling science data DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 26.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 26.5)) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (27, 1279) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (27, 1279) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (27, 1279) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (27, 1279) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (17, 1279) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (17, 1279) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (27, 1279) --> (17, 1279) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (27, 1279) --> (17, 1279) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_rnoise INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_rnoise DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 26.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 26.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (27, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (27, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (27, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (27, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1279) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (27, 1279) --> (17, 1279) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (27, 1279) --> (17, 1279) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_poisson INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_poisson DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 26.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 26.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (27, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (27, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (27, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (27, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1279) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (27, 1279) --> (17, 1279) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (27, 1279) --> (17, 1279) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_flat INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_flat DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 26.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 26.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (27, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (27, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (27, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (27, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1279) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (27, 1279) --> (17, 1279) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (27, 1279) --> (17, 1279) INFO stpipe.ResampleSpecStep:util.py:1060 Update S_REGION to POLYGON ICRS 53.098753934 -27.869721036 53.157714961 -27.869721036 53.157714961 -27.822404837 53.098753934 -27.822404837 INFO stpipe.ResampleSpecStep:util.py:1060 Update S_REGION to POLYGON ICRS 53.098753934 -27.869721036 53.157714961 -27.869721036 53.157714961 -27.822404837 53.098753934 -27.822404837 INFO stpipe.ResampleSpecStep:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.ResampleSpecStep:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.ResampleSpecStep:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.ResampleSpecStep:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.ResampleSpecStep:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.ResampleSpecStep:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.ResampleSpecStep:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.ResampleSpecStep:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.ResampleSpecStep:resample.py:210 Resampling science data INFO stpipe.ResampleSpecStep:resample.py:210 Resampling science data DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 21.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 21.5)) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (22, 782) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (22, 782) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (22, 782) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (22, 782) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (17, 782) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (17, 782) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (22, 782) --> (17, 782) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (22, 782) --> (17, 782) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_rnoise INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_rnoise DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 21.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 21.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (22, 782) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (22, 782) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (22, 782) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (22, 782) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 782) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 782) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (22, 782) --> (17, 782) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (22, 782) --> (17, 782) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_poisson INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_poisson DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 21.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 21.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (22, 782) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (22, 782) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (22, 782) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (22, 782) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 782) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 782) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (22, 782) --> (17, 782) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (22, 782) --> (17, 782) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_flat INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_flat DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 21.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 21.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (22, 782) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (22, 782) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (22, 782) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (22, 782) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 782) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 782) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (22, 782) --> (17, 782) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (22, 782) --> (17, 782) INFO stpipe.ResampleSpecStep:util.py:1060 Update S_REGION to POLYGON ICRS 53.125376182 -27.832054342 53.161275561 -27.832054342 53.161275561 -27.803486876 53.125376182 -27.803486876 INFO stpipe.ResampleSpecStep:util.py:1060 Update S_REGION to POLYGON ICRS 53.125376182 -27.832054342 53.161275561 -27.832054342 53.161275561 -27.803486876 53.125376182 -27.803486876 INFO stpipe.ResampleSpecStep:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.ResampleSpecStep:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.ResampleSpecStep:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.ResampleSpecStep:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.ResampleSpecStep:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.ResampleSpecStep:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.ResampleSpecStep:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.ResampleSpecStep:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.ResampleSpecStep:resample.py:210 Resampling science data INFO stpipe.ResampleSpecStep:resample.py:210 Resampling science data DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 23.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 23.5)) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (24, 1012) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (24, 1012) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (24, 1012) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (24, 1012) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (17, 1012) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (17, 1012) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (24, 1012) --> (17, 1012) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (24, 1012) --> (17, 1012) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_rnoise INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_rnoise DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 23.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 23.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (24, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (24, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (24, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (24, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1012) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (24, 1012) --> (17, 1012) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (24, 1012) --> (17, 1012) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_poisson INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_poisson DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 23.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 23.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (24, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (24, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (24, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (24, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1012) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (24, 1012) --> (17, 1012) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (24, 1012) --> (17, 1012) INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_flat INFO stpipe.ResampleSpecStep:resample.py:263 Resampling var_flat DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 23.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 23.5)) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (24, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:473 Pixmap shape: (24, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (24, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:474 Input Sci shape: (24, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:475 Output Sci shape: (17, 1012) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (24, 1012) --> (17, 1012) INFO stpipe.ResampleSpecStep:resample.py:477 Drizzling (24, 1012) --> (17, 1012) INFO stpipe.ResampleSpecStep:util.py:1060 Update S_REGION to POLYGON ICRS 53.122178099 -27.859535791 53.168806624 -27.859535791 53.168806624 -27.822230934 53.122178099 -27.822230934 INFO stpipe.ResampleSpecStep:util.py:1060 Update S_REGION to POLYGON ICRS 53.122178099 -27.859535791 53.168806624 -27.859535791 53.168806624 -27.822230934 53.122178099 -27.822230934 INFO stpipe.ResampleSpecStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.ResampleSpecStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.ResampleSpecStep:step.py:546 Step ResampleSpecStep done DEBUG stpipe.Spec2Pipeline.master_background_mos:step.py:862 Retrieving step PARS-EXTRACT1DSTEP parameters from CRDS DEBUG stpipe.Spec2Pipeline.master_background_mos:step.py:883 No PARS-EXTRACT1DSTEP reference files found. INFO stpipe.Extract1dStep:step.py:366 Extract1dStep instance created. INFO stpipe.Extract1dStep:step.py:430 Step Extract1dStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Extract1dStep:step.py:434 Step Extract1dStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None} DEBUG stpipe.Extract1dStep:extract_1d_step.py:159 Input is a MultiSlitModel INFO stpipe.Extract1dStep:extract_1d_step.py:389 Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json INFO stpipe.Extract1dStep:extract_1d_step.py:397 Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits INFO stpipe.Extract1dStep:extract.py:2780 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Extract1dStep:extract.py:2780 Turning on source position correction for exp_type = NRS_MSASPEC DEBUG stpipe.Extract1dStep:extract.py:2805 Input is a MultiSlitModel. DEBUG stpipe.Extract1dStep:extract.py:2805 Input is a MultiSlitModel. INFO stpipe.Extract1dStep:extract.py:2813 Working on slit 6 INFO stpipe.Extract1dStep:extract.py:2813 Working on slit 6 DEBUG stpipe.Extract1dStep:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Extract1dStep:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> INFO stpipe.Extract1dStep:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:3614 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Extract1dStep:extract.py:440 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:440 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:441 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:441 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:442 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:442 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstart = None DEBUG stpipe.Extract1dStep:extract.py:443 initial xstart = None DEBUG stpipe.Extract1dStep:extract.py:444 initial xstop = None DEBUG stpipe.Extract1dStep:extract.py:444 initial xstop = None DEBUG stpipe.Extract1dStep:extract.py:445 initial ystart = None DEBUG stpipe.Extract1dStep:extract.py:445 initial ystart = None DEBUG stpipe.Extract1dStep:extract.py:446 initial ystop = None DEBUG stpipe.Extract1dStep:extract.py:446 initial ystop = None DEBUG stpipe.Extract1dStep:extract.py:447 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:447 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:448 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:451 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:451 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:452 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:452 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:453 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:453 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:454 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:454 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:1655 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1655 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1723 Converting extraction limits to [[3.5], [11.5]] DEBUG stpipe.Extract1dStep:extract.py:1723 Converting extraction limits to [[3.5], [11.5]] INFO stpipe.Extract1dStep:extract.py:3433 Using extraction limits: xstart=0, xstop=274, ystart=4.0, ystop=11.0 INFO stpipe.Extract1dStep:extract.py:3433 Using extraction limits: xstart=0, xstop=274, ystart=4.0, ystop=11.0 INFO stpipe.Extract1dStep:extract.py:2813 Working on slit 5 INFO stpipe.Extract1dStep:extract.py:2813 Working on slit 5 DEBUG stpipe.Extract1dStep:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Extract1dStep:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> INFO stpipe.Extract1dStep:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:3614 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Extract1dStep:extract.py:440 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:440 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:441 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:441 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:442 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:442 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstart = None DEBUG stpipe.Extract1dStep:extract.py:443 initial xstart = None DEBUG stpipe.Extract1dStep:extract.py:444 initial xstop = None DEBUG stpipe.Extract1dStep:extract.py:444 initial xstop = None DEBUG stpipe.Extract1dStep:extract.py:445 initial ystart = None DEBUG stpipe.Extract1dStep:extract.py:445 initial ystart = None DEBUG stpipe.Extract1dStep:extract.py:446 initial ystop = None DEBUG stpipe.Extract1dStep:extract.py:446 initial ystop = None DEBUG stpipe.Extract1dStep:extract.py:447 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:447 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:448 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:451 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:451 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:452 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:452 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:453 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:453 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:454 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:454 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:1655 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1655 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] DEBUG stpipe.Extract1dStep:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] INFO stpipe.Extract1dStep:extract.py:3433 Using extraction limits: xstart=0, xstop=1278, ystart=4.5, ystop=11.5 INFO stpipe.Extract1dStep:extract.py:3433 Using extraction limits: xstart=0, xstop=1278, ystart=4.5, ystop=11.5 INFO stpipe.Extract1dStep:extract.py:2813 Working on slit 10 INFO stpipe.Extract1dStep:extract.py:2813 Working on slit 10 DEBUG stpipe.Extract1dStep:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Extract1dStep:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> INFO stpipe.Extract1dStep:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:3614 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Extract1dStep:extract.py:440 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:440 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:441 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:441 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:442 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:442 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstart = None DEBUG stpipe.Extract1dStep:extract.py:443 initial xstart = None DEBUG stpipe.Extract1dStep:extract.py:444 initial xstop = None DEBUG stpipe.Extract1dStep:extract.py:444 initial xstop = None DEBUG stpipe.Extract1dStep:extract.py:445 initial ystart = None DEBUG stpipe.Extract1dStep:extract.py:445 initial ystart = None DEBUG stpipe.Extract1dStep:extract.py:446 initial ystop = None DEBUG stpipe.Extract1dStep:extract.py:446 initial ystop = None DEBUG stpipe.Extract1dStep:extract.py:447 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:447 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:448 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:451 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:451 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:452 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:452 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:453 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:453 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:454 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:454 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:1655 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1655 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] DEBUG stpipe.Extract1dStep:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] INFO stpipe.Extract1dStep:extract.py:3433 Using extraction limits: xstart=0, xstop=781, ystart=4.5, ystop=11.5 INFO stpipe.Extract1dStep:extract.py:3433 Using extraction limits: xstart=0, xstop=781, ystart=4.5, ystop=11.5 INFO stpipe.Extract1dStep:extract.py:2813 Working on slit 16 INFO stpipe.Extract1dStep:extract.py:2813 Working on slit 16 DEBUG stpipe.Extract1dStep:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Extract1dStep:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> INFO stpipe.Extract1dStep:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:3614 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Extract1dStep:extract.py:440 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:440 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:441 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:441 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:442 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:442 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstart = None DEBUG stpipe.Extract1dStep:extract.py:443 initial xstart = None DEBUG stpipe.Extract1dStep:extract.py:444 initial xstop = None DEBUG stpipe.Extract1dStep:extract.py:444 initial xstop = None DEBUG stpipe.Extract1dStep:extract.py:445 initial ystart = None DEBUG stpipe.Extract1dStep:extract.py:445 initial ystart = None DEBUG stpipe.Extract1dStep:extract.py:446 initial ystop = None DEBUG stpipe.Extract1dStep:extract.py:446 initial ystop = None DEBUG stpipe.Extract1dStep:extract.py:447 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:447 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:448 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:451 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:451 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:452 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:452 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:453 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:453 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:454 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:454 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:1655 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1655 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] DEBUG stpipe.Extract1dStep:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] INFO stpipe.Extract1dStep:extract.py:3433 Using extraction limits: xstart=0, xstop=1011, ystart=4.5, ystop=11.5 INFO stpipe.Extract1dStep:extract.py:3433 Using extraction limits: xstart=0, xstop=1011, ystart=4.5, ystop=11.5 DEBUG stpipe.Extract1dStep:extract.py:2952 Not copying from the INT_TIMES table because this is not a TSO exposure. DEBUG stpipe.Extract1dStep:extract.py:2952 Not copying from the INT_TIMES table because this is not a TSO exposure. INFO stpipe.Extract1dStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.Extract1dStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.Extract1dStep:step.py:546 Step Extract1dStep done INFO stpipe.Spec2Pipeline.master_background_mos:nirspec_utils.py:120 Combining 1D background spectra into master background INFO stpipe.Spec2Pipeline.master_background_mos:nirspec_utils.py:120 Combining 1D background spectra into master background DEBUG stpipe.Spec2Pipeline.master_background_mos:combine1d.py:564 Using exptime_key = exposure_time. DEBUG stpipe.Spec2Pipeline.master_background_mos:combine1d.py:564 Using exptime_key = exposure_time. INFO stpipe.Spec2Pipeline.master_background_mos:combine1d.py:529 Using exposure time as the weight. INFO stpipe.Spec2Pipeline.master_background_mos:combine1d.py:529 Using exposure time as the weight. INFO stpipe.Spec2Pipeline.master_background_mos:combine1d.py:204 Accumulating data from input spectrum 1 INFO stpipe.Spec2Pipeline.master_background_mos:combine1d.py:204 Accumulating data from input spectrum 1 INFO stpipe.Spec2Pipeline.master_background_mos:combine1d.py:204 Accumulating data from input spectrum 2 INFO stpipe.Spec2Pipeline.master_background_mos:combine1d.py:204 Accumulating data from input spectrum 2 INFO stpipe.Spec2Pipeline.master_background_mos:combine1d.py:204 Accumulating data from input spectrum 3 INFO stpipe.Spec2Pipeline.master_background_mos:combine1d.py:204 Accumulating data from input spectrum 3 INFO stpipe.Spec2Pipeline.master_background_mos:combine1d.py:204 Accumulating data from input spectrum 4 INFO stpipe.Spec2Pipeline.master_background_mos:combine1d.py:204 Accumulating data from input spectrum 4 WARNING stpipe.Spec2Pipeline.master_background_mos:combine1d.py:232 2 output pixel numbers were NaN WARNING stpipe.Spec2Pipeline.master_background_mos:combine1d.py:232 2 output pixel numbers were NaN WARNING stpipe.Spec2Pipeline.master_background_mos:combine1d.py:241 20 elements of output had no corresponding input data; WARNING stpipe.Spec2Pipeline.master_background_mos:combine1d.py:241 20 elements of output had no corresponding input data; WARNING stpipe.Spec2Pipeline.master_background_mos:combine1d.py:243 these elements will be omitted. WARNING stpipe.Spec2Pipeline.master_background_mos:combine1d.py:243 these elements will be omitted. INFO stpipe.Spec2Pipeline.master_background_mos:nirspec_utils.py:69 Interpolating 1D master background to all MOS 2D slitlets INFO stpipe.Spec2Pipeline.master_background_mos:nirspec_utils.py:69 Interpolating 1D master background to all MOS 2D slitlets INFO stpipe.Spec2Pipeline.master_background_mos:expand_to_2d.py:160 Expanding background for slit 6 INFO stpipe.Spec2Pipeline.master_background_mos:expand_to_2d.py:160 Expanding background for slit 6 INFO stpipe.Spec2Pipeline.master_background_mos:expand_to_2d.py:160 Expanding background for slit 3 INFO stpipe.Spec2Pipeline.master_background_mos:expand_to_2d.py:160 Expanding background for slit 3 INFO stpipe.Spec2Pipeline.master_background_mos:expand_to_2d.py:160 Expanding background for slit 4 INFO stpipe.Spec2Pipeline.master_background_mos:expand_to_2d.py:160 Expanding background for slit 4 INFO stpipe.Spec2Pipeline.master_background_mos:expand_to_2d.py:160 Expanding background for slit 5 INFO stpipe.Spec2Pipeline.master_background_mos:expand_to_2d.py:160 Expanding background for slit 5 INFO stpipe.Spec2Pipeline.master_background_mos:expand_to_2d.py:160 Expanding background for slit 8 INFO stpipe.Spec2Pipeline.master_background_mos:expand_to_2d.py:160 Expanding background for slit 8 INFO stpipe.Spec2Pipeline.master_background_mos:expand_to_2d.py:160 Expanding background for slit 10 INFO stpipe.Spec2Pipeline.master_background_mos:expand_to_2d.py:160 Expanding background for slit 10 INFO stpipe.Spec2Pipeline.master_background_mos:expand_to_2d.py:160 Expanding background for slit 14 INFO stpipe.Spec2Pipeline.master_background_mos:expand_to_2d.py:160 Expanding background for slit 14 INFO stpipe.Spec2Pipeline.master_background_mos:expand_to_2d.py:160 Expanding background for slit 16 INFO stpipe.Spec2Pipeline.master_background_mos:expand_to_2d.py:160 Expanding background for slit 16 INFO stpipe.Spec2Pipeline.master_background_mos.photom:step.py:430 Step photom running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background_mos.photom:step.py:434 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'photom', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': True, 'source_type': 'EXTENDED'} DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom_step.py:35 Input is MultiSlitModel INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom_step.py:46 Using previously specified correction parameters. INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom_step.py:55 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom_step.py:56 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:144 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:144 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:145 detector: NRS1 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:145 detector: NRS1 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:146 exp_type: NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:146 exp_type: NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:148 filter: F170LP INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:148 filter: F170LP INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:152 grating: G235M INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:152 grating: G235M INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 6 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 6 DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 3 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 3 DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 4 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 4 DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 5 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 5 DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 8 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 8 DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 10 DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 14 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 14 DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 16 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 16 DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:step.py:546 Step photom done INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:step.py:430 Step barshadow running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:step.py:434 Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'barshadow', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': True, 'source_type': 'EXTENDED'} DEBUG stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 6 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 6 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 5 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 5 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 14 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 14 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 16 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 16 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:step.py:546 Step barshadow done INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:step.py:430 Step pathloss running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:step.py:434 Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'pathloss', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': True, 'source_type': 'EXTENDED'} INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:232 Input exposure type is NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:232 Input exposure type is NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 0 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 0 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 1 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 1 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 2 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 2 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 3 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 3 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 4 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 4 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 5 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 5 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 6 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 6 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 7 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 7 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:step.py:546 Step pathloss done INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:step.py:430 Step flat_field running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:step.py:434 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'flat_field', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': True} DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field_step.py:74 Input is MultiSlitModel of exposure type NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field_step.py:110 Using flat field from correction pars <MultiSlitModel from nrs_mos_with_bkgslits_rate.fits> DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 6 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 6 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 3 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 3 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 4 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 4 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 5 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 5 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 8 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 8 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 10 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 10 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 14 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 14 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 16 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 16 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:step.py:546 Step flat_field done INFO stpipe.Spec2Pipeline.master_background_mos:nirspec_utils.py:37 Subtracting master background from each MOS source slitlet INFO stpipe.Spec2Pipeline.master_background_mos:nirspec_utils.py:37 Subtracting master background from each MOS source slitlet INFO stpipe.Spec2Pipeline.master_background_mos:step.py:1016 Saved model in nrs_mos_with_bkgslits_masterbg1d.fits INFO stpipe.Spec2Pipeline.master_background_mos:step.py:1016 Saved model in nrs_mos_with_bkgslits_masterbg2d.fits INFO stpipe.Spec2Pipeline.master_background_mos:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Spec2Pipeline.master_background_mos:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Spec2Pipeline.master_background_mos:step.py:546 Step master_background_mos done INFO stpipe.Spec2Pipeline.wavecorr:step.py:430 Step wavecorr running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.wavecorr:step.py:434 Step wavecorr parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'} INFO stpipe.Spec2Pipeline.wavecorr:wavecorr_step.py:56 Using WAVECORR reference file /grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0004.asdf INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:244 Detected a EXTENDED source type in slit 6 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:244 Detected a EXTENDED source type in slit 6 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:244 Detected a POINT source type in slit 3 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:244 Detected a POINT source type in slit 3 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:116 slit name 3 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:116 slit name 3 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:170 Using wavelength zero-point correction for aperture MOS INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:170 Using wavelength zero-point correction for aperture MOS INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:244 Detected a EXTENDED source type in slit 4 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:244 Detected a EXTENDED source type in slit 4 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:244 Detected a EXTENDED source type in slit 5 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:244 Detected a EXTENDED source type in slit 5 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:244 Detected a POINT source type in slit 8 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:244 Detected a POINT source type in slit 8 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:116 slit name 8 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:116 slit name 8 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:170 Using wavelength zero-point correction for aperture MOS INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:170 Using wavelength zero-point correction for aperture MOS INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:244 Detected a EXTENDED source type in slit 10 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:244 Detected a EXTENDED source type in slit 10 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:244 Detected a EXTENDED source type in slit 14 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:244 Detected a EXTENDED source type in slit 14 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:244 Detected a EXTENDED source type in slit 16 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:244 Detected a EXTENDED source type in slit 16 INFO stpipe.Spec2Pipeline.wavecorr:step.py:546 Step wavecorr done INFO stpipe.Spec2Pipeline.flat_field:step.py:430 Step flat_field running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.flat_field:step.py:434 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:74 Input is MultiSlitModel of exposure type NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:201 No reference found for type FLAT DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:199 Using FFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:199 Using SFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:199 Using DFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit 6 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit 6 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 1100 out of 5225 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 1100 out of 5225 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 1 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 1 flat-field values <= 0 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit 3 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit 3 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 5868 out of 18524 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 5868 out of 18524 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 14 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 14 flat-field values <= 0 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit 4 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit 4 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 5471 out of 17182 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 5471 out of 17182 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 14 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 14 flat-field values <= 0 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit 5 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit 5 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 15337 out of 34533 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 15337 out of 34533 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 18 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 18 flat-field values <= 0 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit 8 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit 8 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 4492 out of 14102 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 4492 out of 14102 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 7 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 7 flat-field values <= 0 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit 10 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit 10 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 5434 out of 17204 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 5434 out of 17204 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 8 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 8 flat-field values <= 0 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit 14 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit 14 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 8810 out of 23472 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 8810 out of 23472 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 7 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 7 flat-field values <= 0 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit 16 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit 16 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 9118 out of 24288 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 9118 out of 24288 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 16 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 16 flat-field values <= 0 INFO stpipe.Spec2Pipeline.flat_field:step.py:546 Step flat_field done INFO stpipe.Spec2Pipeline.pathloss:step.py:430 Step pathloss running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.pathloss:step.py:434 Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None} INFO stpipe.Spec2Pipeline.pathloss:pathloss_step.py:38 Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:232 Input exposure type is NRS_MSASPEC INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:232 Input exposure type is NRS_MSASPEC INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:395 Working on slit 0 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:395 Working on slit 0 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:395 Working on slit 1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:395 Working on slit 1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:395 Working on slit 2 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:395 Working on slit 2 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:395 Working on slit 3 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:395 Working on slit 3 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:395 Working on slit 4 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:395 Working on slit 4 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:395 Working on slit 5 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:395 Working on slit 5 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:395 Working on slit 6 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:395 Working on slit 6 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:395 Working on slit 7 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:395 Working on slit 7 INFO stpipe.Spec2Pipeline.pathloss:step.py:546 Step pathloss done INFO stpipe.Spec2Pipeline.barshadow:step.py:430 Step barshadow running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.barshadow:step.py:434 Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None} INFO stpipe.Spec2Pipeline.barshadow:barshadow_step.py:58 Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits DEBUG stpipe.Spec2Pipeline.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 6 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 6 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:170 Bar shadow correction skipped for slitlet 3 (source not uniform) INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:170 Bar shadow correction skipped for slitlet 3 (source not uniform) INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 5 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 5 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:170 Bar shadow correction skipped for slitlet 8 (source not uniform) INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:170 Bar shadow correction skipped for slitlet 8 (source not uniform) INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 14 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 14 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 16 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 16 INFO stpipe.Spec2Pipeline.barshadow:step.py:546 Step barshadow done INFO stpipe.Spec2Pipeline.photom:step.py:430 Step photom running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.photom:step.py:434 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None} DEBUG stpipe.Spec2Pipeline.photom:photom_step.py:35 Input is MultiSlitModel INFO stpipe.Spec2Pipeline.photom:photom_step.py:55 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits INFO stpipe.Spec2Pipeline.photom:photom_step.py:56 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits INFO stpipe.Spec2Pipeline.photom:photom.py:144 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.photom:photom.py:144 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.photom:photom.py:145 detector: NRS1 INFO stpipe.Spec2Pipeline.photom:photom.py:145 detector: NRS1 INFO stpipe.Spec2Pipeline.photom:photom.py:146 exp_type: NRS_MSASPEC INFO stpipe.Spec2Pipeline.photom:photom.py:146 exp_type: NRS_MSASPEC INFO stpipe.Spec2Pipeline.photom:photom.py:148 filter: F170LP INFO stpipe.Spec2Pipeline.photom:photom.py:148 filter: F170LP INFO stpipe.Spec2Pipeline.photom:photom.py:152 grating: G235M INFO stpipe.Spec2Pipeline.photom:photom.py:152 grating: G235M INFO stpipe.Spec2Pipeline.photom:photom.py:250 Working on slit 6 INFO stpipe.Spec2Pipeline.photom:photom.py:250 Working on slit 6 DEBUG stpipe.Spec2Pipeline.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:250 Working on slit 3 INFO stpipe.Spec2Pipeline.photom:photom.py:250 Working on slit 3 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:250 Working on slit 4 INFO stpipe.Spec2Pipeline.photom:photom.py:250 Working on slit 4 DEBUG stpipe.Spec2Pipeline.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:250 Working on slit 5 INFO stpipe.Spec2Pipeline.photom:photom.py:250 Working on slit 5 DEBUG stpipe.Spec2Pipeline.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:250 Working on slit 8 INFO stpipe.Spec2Pipeline.photom:photom.py:250 Working on slit 8 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:250 Working on slit 10 INFO stpipe.Spec2Pipeline.photom:photom.py:250 Working on slit 10 DEBUG stpipe.Spec2Pipeline.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:250 Working on slit 14 INFO stpipe.Spec2Pipeline.photom:photom.py:250 Working on slit 14 DEBUG stpipe.Spec2Pipeline.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:250 Working on slit 16 INFO stpipe.Spec2Pipeline.photom:photom.py:250 Working on slit 16 DEBUG stpipe.Spec2Pipeline.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:step.py:546 Step photom done INFO stpipe.Spec2Pipeline.resample_spec:step.py:430 Step resample_spec running with args (<MultiSlitModel from nrs_mos_with_bkgslits_cal.fits>,). INFO stpipe.Spec2Pipeline.resample_spec:step.py:434 Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True} INFO stpipe.Spec2Pipeline.resample_spec:resample_spec_step.py:60 No DRIZPARS reffile INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: pixfrac=1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: pixfrac=1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: kernel='square' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: kernel='square' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: fillval='INDEF' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: fillval='INDEF' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: wht_type='ivm' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: wht_type='ivm' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: pscale_ratio=1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: pscale_ratio=1.0 INFO stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:37 Reorganizing data from exposure nrs_mos_with_bkgslits_cal.fits INFO stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:37 Reorganizing data from exposure nrs_mos_with_bkgslits_cal.fits DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 37 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 37 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 35 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 35 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 29 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 29 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 36 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 36 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 15 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 15 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 38 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 38 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 6 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 6 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 39 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 39 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 18.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 18.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (19, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (19, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (19, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (19, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (16, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (16, 275) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (19, 275) --> (16, 275) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (19, 275) --> (16, 275) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 18.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 18.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (19, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (19, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (19, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (19, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (16, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (16, 275) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (19, 275) --> (16, 275) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (19, 275) --> (16, 275) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 18.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 18.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (19, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (19, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (19, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (19, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (16, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (16, 275) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (19, 275) --> (16, 275) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (19, 275) --> (16, 275) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 18.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 18.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (19, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (19, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (19, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (19, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (16, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (16, 275) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (19, 275) --> (16, 275) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (19, 275) --> (16, 275) INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 53.158246078 -27.801207374 53.171030520 -27.801207374 53.171030520 -27.791100221 53.158246078 -27.791100221 INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 53.158246078 -27.801207374 53.171030520 -27.801207374 53.171030520 -27.791100221 53.158246078 -27.791100221 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 841.5), (-0.5, 21.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 841.5), (-0.5, 21.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (22, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (22, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (22, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (22, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (17, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (17, 842) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (22, 842) --> (17, 842) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (22, 842) --> (17, 842) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 841.5), (-0.5, 21.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 841.5), (-0.5, 21.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (22, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (22, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (22, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (22, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 842) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (22, 842) --> (17, 842) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (22, 842) --> (17, 842) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 841.5), (-0.5, 21.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 841.5), (-0.5, 21.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (22, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (22, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (22, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (22, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 842) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (22, 842) --> (17, 842) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (22, 842) --> (17, 842) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 841.5), (-0.5, 21.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 841.5), (-0.5, 21.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (22, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (22, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (22, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (22, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 842) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (22, 842) --> (17, 842) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (22, 842) --> (17, 842) INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 53.123683773 -27.838204147 53.162357841 -27.838204147 53.162357841 -27.807387296 53.123683773 -27.807387296 INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 53.123683773 -27.838204147 53.162357841 -27.838204147 53.162357841 -27.807387296 53.123683773 -27.807387296 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 780.5), (-0.5, 21.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 780.5), (-0.5, 21.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (22, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (22, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (22, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (22, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (17, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (17, 781) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (22, 781) --> (17, 781) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (22, 781) --> (17, 781) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 780.5), (-0.5, 21.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 780.5), (-0.5, 21.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (22, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (22, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (22, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (22, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 781) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (22, 781) --> (17, 781) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (22, 781) --> (17, 781) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 780.5), (-0.5, 21.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 780.5), (-0.5, 21.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (22, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (22, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (22, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (22, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 781) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (22, 781) --> (17, 781) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (22, 781) --> (17, 781) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 780.5), (-0.5, 21.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 780.5), (-0.5, 21.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (22, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (22, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (22, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (22, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 781) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (22, 781) --> (17, 781) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (22, 781) --> (17, 781) INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 53.136786697 -27.844574508 53.172768219 -27.844574508 53.172768219 -27.815903465 53.136786697 -27.815903465 INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 53.136786697 -27.844574508 53.172768219 -27.844574508 53.172768219 -27.815903465 53.136786697 -27.815903465 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (17, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (17, 1279) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 1279) --> (17, 1279) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 1279) --> (17, 1279) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1279) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (27, 1279) --> (17, 1279) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (27, 1279) --> (17, 1279) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1279) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (27, 1279) --> (17, 1279) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (27, 1279) --> (17, 1279) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1279) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (27, 1279) --> (17, 1279) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (27, 1279) --> (17, 1279) INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 53.098753934 -27.869721036 53.157714961 -27.869721036 53.157714961 -27.822404837 53.098753934 -27.822404837 INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 53.098753934 -27.869721036 53.157714961 -27.869721036 53.157714961 -27.822404837 53.098753934 -27.822404837 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 640.5), (-0.5, 21.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 640.5), (-0.5, 21.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (22, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (22, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (22, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (22, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (17, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (17, 641) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (22, 641) --> (17, 641) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (22, 641) --> (17, 641) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 640.5), (-0.5, 21.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 640.5), (-0.5, 21.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (22, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (22, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (22, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (22, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 641) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (22, 641) --> (17, 641) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (22, 641) --> (17, 641) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 640.5), (-0.5, 21.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 640.5), (-0.5, 21.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (22, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (22, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (22, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (22, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 641) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (22, 641) --> (17, 641) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (22, 641) --> (17, 641) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 640.5), (-0.5, 21.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 640.5), (-0.5, 21.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (22, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (22, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (22, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (22, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 641) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (22, 641) --> (17, 641) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (22, 641) --> (17, 641) INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 53.145560816 -27.835548815 53.175125632 -27.835548815 53.175125632 -27.812051414 53.145560816 -27.812051414 INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 53.145560816 -27.835548815 53.175125632 -27.835548815 53.175125632 -27.812051414 53.145560816 -27.812051414 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 21.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 21.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (22, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (22, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (22, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (22, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (17, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (17, 782) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (22, 782) --> (17, 782) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (22, 782) --> (17, 782) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 21.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 21.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (22, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (22, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (22, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (22, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 782) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (22, 782) --> (17, 782) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (22, 782) --> (17, 782) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 21.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 21.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (22, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (22, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (22, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (22, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 782) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (22, 782) --> (17, 782) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (22, 782) --> (17, 782) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 21.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 21.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (22, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (22, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (22, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (22, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 782) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (22, 782) --> (17, 782) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (22, 782) --> (17, 782) INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 53.125376182 -27.832054342 53.161275561 -27.832054342 53.161275561 -27.803486876 53.125376182 -27.803486876 INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 53.125376182 -27.832054342 53.161275561 -27.832054342 53.161275561 -27.803486876 53.125376182 -27.803486876 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 977.5), (-0.5, 23.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 977.5), (-0.5, 23.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (24, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (24, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (24, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (24, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (17, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (17, 978) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (24, 978) --> (17, 978) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (24, 978) --> (17, 978) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 977.5), (-0.5, 23.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 977.5), (-0.5, 23.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (24, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (24, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (24, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (24, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 978) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (24, 978) --> (17, 978) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (24, 978) --> (17, 978) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 977.5), (-0.5, 23.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 977.5), (-0.5, 23.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (24, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (24, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (24, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (24, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 978) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (24, 978) --> (17, 978) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (24, 978) --> (17, 978) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 977.5), (-0.5, 23.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 977.5), (-0.5, 23.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (24, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (24, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (24, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (24, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 978) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (24, 978) --> (17, 978) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (24, 978) --> (17, 978) INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 53.123860814 -27.856766763 53.168909965 -27.856766763 53.168909965 -27.820747374 53.123860814 -27.820747374 INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 53.123860814 -27.856766763 53.168909965 -27.856766763 53.168909965 -27.820747374 53.123860814 -27.820747374 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 23.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 23.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (24, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (24, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (24, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (24, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (17, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (17, 1012) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (24, 1012) --> (17, 1012) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (24, 1012) --> (17, 1012) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 23.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 23.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (24, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (24, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (24, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (24, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1012) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (24, 1012) --> (17, 1012) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (24, 1012) --> (17, 1012) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 23.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 23.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (24, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (24, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (24, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (24, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1012) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (24, 1012) --> (17, 1012) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (24, 1012) --> (17, 1012) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 23.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 23.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (24, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (24, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (24, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (24, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1012) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (24, 1012) --> (17, 1012) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (24, 1012) --> (17, 1012) INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 53.122178099 -27.859535791 53.168806624 -27.859535791 53.168806624 -27.822230934 53.122178099 -27.822230934 INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 53.122178099 -27.859535791 53.168806624 -27.859535791 53.168806624 -27.822230934 53.122178099 -27.822230934 INFO stpipe.Spec2Pipeline.resample_spec:step.py:1016 Saved model in nrs_mos_with_bkgslits_s2d.fits INFO stpipe.Spec2Pipeline.resample_spec:step.py:546 Step resample_spec done INFO stpipe.Spec2Pipeline.extract_1d:step.py:430 Step extract_1d running with args (<MultiSlitModel from nrs_mos_with_bkgslits_s2d.fits>,). INFO stpipe.Spec2Pipeline.extract_1d:step.py:434 Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None} DEBUG stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:159 Input is a MultiSlitModel INFO stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:389 Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json INFO stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:397 Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2780 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2780 Turning on source position correction for exp_type = NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2805 Input is a MultiSlitModel. DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2805 Input is a MultiSlitModel. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit 6 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit 6 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[3.5], [11.5]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[3.5], [11.5]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=274, ystart=4.0, ystop=11.0 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=274, ystart=4.0, ystop=11.0 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit 3 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit 3 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = True DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = True WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1449 WCS implies the target is at -424.46, which is outside the bounding box, WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1449 WCS implies the target is at -424.46, which is outside the bounding box, WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1450 so we can't get spectrum location using the WCS WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1450 so we can't get spectrum location using the WCS DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1301 Spectrum location from WCS used column/row 420 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1301 Spectrum location from WCS used column/row 420 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=841, ystart=4.5, ystop=11.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=841, ystart=4.5, ystop=11.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3770 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3770 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit 4 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit 4 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=780, ystart=4.5, ystop=11.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=780, ystart=4.5, ystop=11.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit 5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit 5 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1278, ystart=4.5, ystop=11.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1278, ystart=4.5, ystop=11.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit 8 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = True DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = True WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1449 WCS implies the target is at -1002.91, which is outside the bounding box, WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1449 WCS implies the target is at -1002.91, which is outside the bounding box, WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1450 so we can't get spectrum location using the WCS WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1450 so we can't get spectrum location using the WCS DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1301 Spectrum location from WCS used column/row 320 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1301 Spectrum location from WCS used column/row 320 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=640, ystart=4.5, ystop=11.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=640, ystart=4.5, ystop=11.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3770 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3770 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit 10 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit 10 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=781, ystart=4.5, ystop=11.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=781, ystart=4.5, ystop=11.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit 14 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit 14 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=977, ystart=4.5, ystop=11.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=977, ystart=4.5, ystop=11.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit 16 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit 16 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1011, ystart=4.5, ystop=11.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1011, ystart=4.5, ystop=11.5 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2952 Not copying from the INT_TIMES table because this is not a TSO exposure. DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2952 Not copying from the INT_TIMES table because this is not a TSO exposure. INFO stpipe.Spec2Pipeline.extract_1d:step.py:1016 Saved model in nrs_mos_with_bkgslits_x1d.fits INFO stpipe.Spec2Pipeline.extract_1d:step.py:546 Step extract_1d done INFO stpipe.Spec2Pipeline:calwebb_spec2.py:314 Finished processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits INFO stpipe.Spec2Pipeline:calwebb_spec2.py:138 Ending calwebb_spec2 INFO stpipe.Spec2Pipeline:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Spec2Pipeline:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Spec2Pipeline:step.py:1016 Saved model in nrs_mos_with_bkgslits_cal.fits INFO stpipe.Spec2Pipeline:step.py:546 Step Spec2Pipeline done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg[masterbg1d] | 0.14 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg[masterbg2d] | 0.53 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg_user[cal] | 112.93 | |
|
-----------------------------Captured stderr setup------------------------------ 2022-10-06 04:49:49,726 - stpipe.Spec2Pipeline - INFO - Spec2Pipeline instance created. 2022-10-06 04:49:49,728 - stpipe.Spec2Pipeline.bkg_subtract - INFO - BackgroundStep instance created. 2022-10-06 04:49:49,729 - stpipe.Spec2Pipeline.assign_wcs - INFO - AssignWcsStep instance created. 2022-10-06 04:49:49,730 - stpipe.Spec2Pipeline.imprint_subtract - INFO - ImprintStep instance created. 2022-10-06 04:49:49,731 - stpipe.Spec2Pipeline.msa_flagging - INFO - MSAFlagOpenStep instance created. 2022-10-06 04:49:49,732 - stpipe.Spec2Pipeline.extract_2d - INFO - Extract2dStep instance created. 2022-10-06 04:49:49,735 - stpipe.Spec2Pipeline.master_background_mos - INFO - MasterBackgroundMosStep instance created. 2022-10-06 04:49:49,736 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - FlatFieldStep instance created. 2022-10-06 04:49:49,736 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - PathLossStep instance created. 2022-10-06 04:49:49,737 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - BarShadowStep instance created. 2022-10-06 04:49:49,738 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - PhotomStep instance created. 2022-10-06 04:49:49,739 - stpipe.Spec2Pipeline.wavecorr - INFO - WavecorrStep instance created. 2022-10-06 04:49:49,740 - stpipe.Spec2Pipeline.flat_field - INFO - FlatFieldStep instance created. 2022-10-06 04:49:49,741 - stpipe.Spec2Pipeline.srctype - INFO - SourceTypeStep instance created. 2022-10-06 04:49:49,742 - stpipe.Spec2Pipeline.straylight - INFO - StraylightStep instance created. 2022-10-06 04:49:49,743 - stpipe.Spec2Pipeline.fringe - INFO - FringeStep instance created. 2022-10-06 04:49:49,744 - stpipe.Spec2Pipeline.pathloss - INFO - PathLossStep instance created. 2022-10-06 04:49:49,745 - stpipe.Spec2Pipeline.barshadow - INFO - BarShadowStep instance created. 2022-10-06 04:49:49,746 - stpipe.Spec2Pipeline.wfss_contam - INFO - WfssContamStep instance created. 2022-10-06 04:49:49,746 - stpipe.Spec2Pipeline.photom - INFO - PhotomStep instance created. 2022-10-06 04:49:49,748 - stpipe.Spec2Pipeline.resample_spec - INFO - ResampleSpecStep instance created. 2022-10-06 04:49:49,749 - stpipe.Spec2Pipeline.cube_build - INFO - CubeBuildStep instance created. 2022-10-06 04:49:49,750 - stpipe.Spec2Pipeline.extract_1d - INFO - Extract1dStep instance created. 2022-10-06 04:49:50,619 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/jw00626030001_02103_00001_nrs1_rate.fits',). 2022-10-06 04:49:50,633 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_bsub': False, 'fail_on_exception': True, 'save_wfss_esec': False, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000}, 'master_background_mos': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'force_subtract': False, 'save_background': False, 'user_background': 'jw00626030001_02103_00001_nrs1_masterbg1d.fits', 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'source_type': None}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'wfss_contam': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_simulated_image': False, 'save_contam_images': False, 'maximum_cores': 'none'}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'drizzle', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None}}} 2022-10-06 04:49:50,875 - stpipe.Spec2Pipeline - INFO - Prefetching reference files for dataset: 'jw00626030001_02103_00001_nrs1_rate.fits' reftypes = ['apcorr', 'area', 'barshadow', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'mrsxartcorr', 'msa', 'msaoper', 'ote', 'pathloss', 'photom', 'regions', 'sflat', 'speckernel', 'specprofile', 'spectrace', 'specwcs', 'wavecorr', 'wavelengthrange', 'wavemap', 'wfssbkg'] 2022-10-06 04:49:50,895 - stpipe.Spec2Pipeline - INFO - Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits'. 2022-10-06 04:49:50,897 - stpipe.Spec2Pipeline - INFO - Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits'. 2022-10-06 04:49:50,898 - stpipe.Spec2Pipeline - INFO - Prefetch for BARSHADOW reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits'. 2022-10-06 04:49:50,900 - stpipe.Spec2Pipeline - INFO - Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. 2022-10-06 04:49:50,901 - stpipe.Spec2Pipeline - INFO - Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. 2022-10-06 04:49:50,903 - stpipe.Spec2Pipeline - INFO - Prefetch for CUBEPAR reference file is 'N/A'. 2022-10-06 04:49:50,903 - stpipe.Spec2Pipeline - INFO - Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits'. 2022-10-06 04:49:50,904 - stpipe.Spec2Pipeline - INFO - Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf'. 2022-10-06 04:49:50,906 - stpipe.Spec2Pipeline - INFO - Prefetch for DISTORTION reference file is 'N/A'. 2022-10-06 04:49:50,906 - stpipe.Spec2Pipeline - INFO - Prefetch for DRIZPARS reference file is 'N/A'. 2022-10-06 04:49:50,906 - stpipe.Spec2Pipeline - INFO - Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json'. 2022-10-06 04:49:50,906 - stpipe.Spec2Pipeline - INFO - Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits'. 2022-10-06 04:49:50,908 - stpipe.Spec2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is 'N/A'. 2022-10-06 04:49:50,908 - stpipe.Spec2Pipeline - INFO - Prefetch for FLAT reference file is 'N/A'. 2022-10-06 04:49:50,908 - stpipe.Spec2Pipeline - INFO - Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf'. 2022-10-06 04:49:50,909 - stpipe.Spec2Pipeline - INFO - Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. 2022-10-06 04:49:50,910 - stpipe.Spec2Pipeline - INFO - Prefetch for FRINGE reference file is 'N/A'. 2022-10-06 04:49:50,910 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'. 2022-10-06 04:49:50,910 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'. 2022-10-06 04:49:50,910 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'. 2022-10-06 04:49:50,910 - stpipe.Spec2Pipeline - INFO - Prefetch for MRSXARTCORR reference file is 'N/A'. 2022-10-06 04:49:50,910 - stpipe.Spec2Pipeline - INFO - Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. 2022-10-06 04:49:50,911 - stpipe.Spec2Pipeline - INFO - Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. 2022-10-06 04:49:50,912 - stpipe.Spec2Pipeline - INFO - Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. 2022-10-06 04:49:50,913 - stpipe.Spec2Pipeline - INFO - Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits'. 2022-10-06 04:49:50,914 - stpipe.Spec2Pipeline - INFO - Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits'. 2022-10-06 04:49:50,916 - stpipe.Spec2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'. 2022-10-06 04:49:50,916 - stpipe.Spec2Pipeline - INFO - Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits'. 2022-10-06 04:49:50,917 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECKERNEL reference file is 'N/A'. 2022-10-06 04:49:50,917 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECPROFILE reference file is 'N/A'. 2022-10-06 04:49:50,917 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECTRACE reference file is 'N/A'. 2022-10-06 04:49:50,917 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'. 2022-10-06 04:49:50,917 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0004.asdf'. 2022-10-06 04:49:50,918 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf'. 2022-10-06 04:49:50,919 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVEMAP reference file is 'N/A'. 2022-10-06 04:49:50,919 - stpipe.Spec2Pipeline - INFO - Prefetch for WFSSBKG reference file is 'N/A'. 2022-10-06 04:49:50,919 - stpipe.Spec2Pipeline - INFO - Starting calwebb_spec2 ... 2022-10-06 04:49:50,919 - stpipe.Spec2Pipeline - INFO - Processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/jw00626030001_02103_00001_nrs1 2022-10-06 04:49:50,919 - stpipe.Spec2Pipeline - INFO - Working on input /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/jw00626030001_02103_00001_nrs1_rate.fits ... 2022-10-06 04:49:51,451 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(2048, 2048) from jw00626030001_02103_00001_nrs1_rate.fits>,). 2022-10-06 04:49:51,452 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} 2022-10-06 04:49:51,617 - stpipe.Spec2Pipeline.assign_wcs - INFO - Retrieving open MSA slitlets for msa_metadata_id = 5 and dither_index = 1 2022-10-06 04:49:51,630 - stpipe.Spec2Pipeline.assign_wcs - INFO - Slitlet_id 8 is background only; assigned source_id = 2316 2022-10-06 04:49:51,696 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_ytilt is 0.139291257 deg 2022-10-06 04:49:51,696 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.316133170999999 deg 2022-10-06 04:49:51,697 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_y correction: 0.005914304200586192 deg 2022-10-06 04:49:51,698 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_x correction: 0.0 deg 2022-10-06 04:49:51,997 - stpipe.Spec2Pipeline.assign_wcs - INFO - Slits projected on detector NRS1: [1, 2, 8, 10, 20, 21] 2022-10-06 04:49:51,998 - stpipe.Spec2Pipeline.assign_wcs - INFO - Computing WCS for 6 open slitlets 2022-10-06 04:49:52,035 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_ytilt is 0.139291257 deg 2022-10-06 04:49:52,035 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.316133170999999 deg 2022-10-06 04:49:52,035 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_y correction: 0.005914304200586192 deg 2022-10-06 04:49:52,037 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_x correction: 0.0 deg 2022-10-06 04:49:52,052 - stpipe.Spec2Pipeline.assign_wcs - INFO - SPORDER= -1, wrange=[1.66e-06, 3.17e-06] 2022-10-06 04:49:52,217 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 1 open slits in quadrant 1 2022-10-06 04:49:52,226 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 1 open slits in quadrant 2 2022-10-06 04:49:52,235 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 3 open slits in quadrant 3 2022-10-06 04:49:52,259 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 1 open slits in quadrant 4 2022-10-06 04:49:52,267 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 5 2022-10-06 04:49:52,428 - stpipe.Spec2Pipeline.assign_wcs - INFO - Created a NIRSPEC nrs_msaspec pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None, 'msametafile': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_3pointnod_1_msa.fits'} 2022-10-06 04:49:52,724 - stpipe.Spec2Pipeline.assign_wcs - INFO - COMPLETED assign_wcs 2022-10-06 04:49:52,741 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs done 2022-10-06 04:49:52,998 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract running with args (<ImageModel(2048, 2048) from jw00626030001_02103_00001_nrs1_rate.fits>, []). 2022-10-06 04:49:52,999 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None} 2022-10-06 04:49:53,000 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step skipped. 2022-10-06 04:49:53,002 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract done 2022-10-06 04:49:53,233 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract running with args (<ImageModel(2048, 2048) from jw00626030001_02103_00001_nrs1_rate.fits>, []). 2022-10-06 04:49:53,233 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'} 2022-10-06 04:49:53,234 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step skipped. 2022-10-06 04:49:53,236 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract done 2022-10-06 04:49:53,471 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging running with args (<ImageModel(2048, 2048) from jw00626030001_02103_00001_nrs1_rate.fits>,). 2022-10-06 04:49:53,472 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'} 2022-10-06 04:49:53,490 - stpipe.Spec2Pipeline.msa_flagging - INFO - Using reference file /grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json 2022-10-06 04:49:53,491 - stpipe.JwstStep - INFO - JwstStep instance created. 2022-10-06 04:49:53,644 - stpipe.Spec2Pipeline.msa_flagging - INFO - gwa_ytilt is 0.139291257 deg 2022-10-06 04:49:53,644 - stpipe.Spec2Pipeline.msa_flagging - INFO - gwa_xtilt is 0.316133170999999 deg 2022-10-06 04:49:53,645 - stpipe.Spec2Pipeline.msa_flagging - INFO - theta_y correction: 0.005914304200586192 deg 2022-10-06 04:49:53,646 - stpipe.Spec2Pipeline.msa_flagging - INFO - theta_x correction: 0.0 deg 2022-10-06 04:49:53,664 - stpipe.Spec2Pipeline.msa_flagging - INFO - SPORDER= -1, wrange=[1.66e-06, 3.17e-06] 2022-10-06 04:49:53,855 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 5 open slits in quadrant 1 2022-10-06 04:49:53,905 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 3 open slits in quadrant 2 2022-10-06 04:49:53,935 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 9 open slits in quadrant 3 2022-10-06 04:49:54,017 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 3 open slits in quadrant 4 2022-10-06 04:49:54,045 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 0 open slits in quadrant 5 2022-10-06 04:50:07,288 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging done 2022-10-06 04:50:07,674 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d running with args (<ImageModel(2048, 2048) from jw00626030001_02103_00001_nrs1_rate.fits>,). 2022-10-06 04:50:07,676 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000} 2022-10-06 04:50:07,695 - stpipe.Spec2Pipeline.extract_2d - INFO - EXP_TYPE is NRS_MSASPEC 2022-10-06 04:50:07,910 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 20 2022-10-06 04:50:07,910 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 1821 2048 2022-10-06 04:50:07,910 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1916 1936 2022-10-06 04:50:08,117 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2022-10-06 04:50:08,125 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.157040698 -28.977246946 53.156582655 -28.977448677 53.156610178 -28.977497225 53.157068225 -28.977295501 2022-10-06 04:50:08,126 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.157040698 -28.977246946 53.156582655 -28.977448677 53.156610178 -28.977497225 53.157068225 -28.977295501 2022-10-06 04:50:08,318 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 21 2022-10-06 04:50:08,318 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 1777 2048 2022-10-06 04:50:08,318 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 709 729 2022-10-06 04:50:08,526 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2022-10-06 04:50:08,535 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.120636026 -28.993156166 53.120187414 -28.993353248 53.120214704 -28.993401359 53.120663318 -28.993204282 2022-10-06 04:50:08,536 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.120636026 -28.993156166 53.120187414 -28.993353248 53.120214704 -28.993401359 53.120663318 -28.993204282 2022-10-06 04:50:08,733 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 1 2022-10-06 04:50:08,733 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 909 2048 2022-10-06 04:50:08,733 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1846 1872 2022-10-06 04:50:08,950 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2022-10-06 04:50:08,959 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.168324586 -29.001703828 53.167865339 -29.001902421 53.167893185 -29.001950811 53.168352436 -29.001752223 2022-10-06 04:50:08,960 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.168324586 -29.001703828 53.167865339 -29.001902421 53.167893185 -29.001950811 53.168352436 -29.001752223 2022-10-06 04:50:09,452 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 2 2022-10-06 04:50:09,453 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 710 2048 2022-10-06 04:50:09,453 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1615 1643 2022-10-06 04:50:09,673 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2022-10-06 04:50:09,682 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.164110352 -29.009612208 53.163652590 -29.009809455 53.163680465 -29.009857765 53.164138231 -29.009660524 2022-10-06 04:50:09,683 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.164110352 -29.009612208 53.163652590 -29.009809455 53.163680465 -29.009857765 53.164138231 -29.009660524 2022-10-06 04:50:09,869 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 8 2022-10-06 04:50:09,869 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 717 2048 2022-10-06 04:50:09,869 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1355 1372 2022-10-06 04:50:10,073 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2022-10-06 04:50:10,082 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.155628964 -29.012684914 53.155472777 -29.012752250 53.155500576 -29.012800470 53.155656764 -29.012733136 2022-10-06 04:50:10,083 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.155628964 -29.012684914 53.155472777 -29.012752250 53.155500576 -29.012800470 53.155656764 -29.012733136 2022-10-06 04:50:10,278 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 10 2022-10-06 04:50:10,279 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 605 2038 2022-10-06 04:50:10,279 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 708 735 2022-10-06 04:50:10,516 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2022-10-06 04:50:10,526 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.137763493 -29.023122380 53.137312898 -29.023316550 53.137340565 -29.023364583 53.137791165 -29.023170417 2022-10-06 04:50:10,527 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.137763493 -29.023122380 53.137312898 -29.023316550 53.137340565 -29.023364583 53.137791165 -29.023170417 2022-10-06 04:50:11,175 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d done 2022-10-06 04:50:11,448 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). 2022-10-06 04:50:11,449 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'source_type': None} 2022-10-06 04:50:11,456 - stpipe.Spec2Pipeline.srctype - INFO - Input EXP_TYPE is NRS_MSASPEC 2022-10-06 04:50:11,457 - stpipe.Spec2Pipeline.srctype - INFO - source_id=443, stellarity=1.0000, type=POINT 2022-10-06 04:50:11,458 - stpipe.Spec2Pipeline.srctype - INFO - source_id=482, stellarity=0.2000, type=EXTENDED 2022-10-06 04:50:11,459 - stpipe.Spec2Pipeline.srctype - INFO - source_id=227, stellarity=0.2000, type=EXTENDED 2022-10-06 04:50:11,460 - stpipe.Spec2Pipeline.srctype - INFO - source_id=279, stellarity=1.0000, type=POINT 2022-10-06 04:50:11,461 - stpipe.Spec2Pipeline.srctype - INFO - source_id=2316, stellarity=0.0000, type=EXTENDED 2022-10-06 04:50:11,462 - stpipe.Spec2Pipeline.srctype - INFO - source_id=2315, stellarity=0.8000, type=POINT 2022-10-06 04:50:11,464 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype done 2022-10-06 04:50:11,726 - stpipe.Spec2Pipeline.master_background_mos - INFO - Step master_background_mos running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). 2022-10-06 04:50:11,729 - stpipe.Spec2Pipeline.master_background_mos - INFO - Step master_background_mos parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'force_subtract': False, 'save_background': False, 'user_background': 'jw00626030001_02103_00001_nrs1_masterbg1d.fits', 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}}} 2022-10-06 04:50:11,736 - stpipe.Spec2Pipeline.master_background_mos - INFO - Calculating master background from user-supplied background jw00626030001_02103_00001_nrs1_masterbg1d.fits 2022-10-06 04:50:12,067 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - Step flat_field running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). 2022-10-06 04:50:12,068 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2022-10-06 04:50:17,438 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - Working on slit 20 2022-10-06 04:50:18,704 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - Working on slit 21 2022-10-06 04:50:19,853 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - Working on slit 1 2022-10-06 04:50:24,122 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - Working on slit 2 2022-10-06 04:50:28,977 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - Working on slit 8 2022-10-06 04:50:30,883 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - Working on slit 10 2022-10-06 04:50:36,592 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - Step flat_field done 2022-10-06 04:50:36,904 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Step pathloss running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). 2022-10-06 04:50:36,905 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': 'EXTENDED'} 2022-10-06 04:50:36,943 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits 2022-10-06 04:50:37,002 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Input exposure type is NRS_MSASPEC 2022-10-06 04:50:38,073 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Working on slit 0 2022-10-06 04:50:38,094 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Working on slit 1 2022-10-06 04:50:38,114 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Working on slit 2 2022-10-06 04:50:38,114 - stpipe.Spec2Pipeline.master_background_mos.pathloss - WARNING - Source is outside slit. 2022-10-06 04:50:38,114 - stpipe.Spec2Pipeline.master_background_mos.pathloss - WARNING - No correction provided for slit 2. Skipping 2022-10-06 04:50:38,114 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Working on slit 3 2022-10-06 04:50:38,138 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Working on slit 4 2022-10-06 04:50:38,161 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Working on slit 5 2022-10-06 04:50:38,188 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Step pathloss done 2022-10-06 04:50:38,536 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - Step barshadow running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). 2022-10-06 04:50:38,537 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': 'EXTENDED'} 2022-10-06 04:50:38,565 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits 2022-10-06 04:50:39,660 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - Working on slitlet 20 2022-10-06 04:50:39,703 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - Working on slitlet 21 2022-10-06 04:50:39,748 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - Working on slitlet 1 2022-10-06 04:50:39,868 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - Working on slitlet 2 2022-10-06 04:50:40,014 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - Working on slitlet 8 2022-10-06 04:50:40,095 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - Working on slitlet 10 2022-10-06 04:50:40,247 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - Step barshadow done 2022-10-06 04:50:40,638 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Step photom running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). 2022-10-06 04:50:40,640 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': 'EXTENDED'} 2022-10-06 04:50:40,689 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits 2022-10-06 04:50:40,689 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits 2022-10-06 04:50:41,775 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Using instrument: NIRSPEC 2022-10-06 04:50:41,775 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - detector: NRS1 2022-10-06 04:50:41,775 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - exp_type: NRS_MSASPEC 2022-10-06 04:50:41,775 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - filter: F170LP 2022-10-06 04:50:41,775 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - grating: G235M 2022-10-06 04:50:41,853 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Working on slit 20 2022-10-06 04:50:41,853 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:50:41,862 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Working on slit 21 2022-10-06 04:50:41,863 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:50:41,871 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Working on slit 1 2022-10-06 04:50:41,872 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:50:41,882 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Working on slit 2 2022-10-06 04:50:41,882 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:50:41,892 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Working on slit 8 2022-10-06 04:50:41,893 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:50:41,902 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Working on slit 10 2022-10-06 04:50:41,903 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:50:41,918 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Step photom done 2022-10-06 04:50:41,918 - stpipe.Spec2Pipeline.master_background_mos - INFO - Interpolating 1D master background to all MOS 2D slitlets 2022-10-06 04:50:43,411 - stpipe.Spec2Pipeline.master_background_mos - INFO - Expanding background for slit 20 2022-10-06 04:50:43,411 - stpipe.Spec2Pipeline.master_background_mos - INFO - Expanding background for slit 21 2022-10-06 04:50:43,412 - stpipe.Spec2Pipeline.master_background_mos - INFO - Expanding background for slit 1 2022-10-06 04:50:43,412 - stpipe.Spec2Pipeline.master_background_mos - INFO - Expanding background for slit 2 2022-10-06 04:50:43,413 - stpipe.Spec2Pipeline.master_background_mos - INFO - Expanding background for slit 8 2022-10-06 04:50:43,413 - stpipe.Spec2Pipeline.master_background_mos - INFO - Expanding background for slit 10 2022-10-06 04:50:43,796 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Step photom running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). 2022-10-06 04:50:43,797 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'photom', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': True, 'source_type': 'EXTENDED'} 2022-10-06 04:50:43,805 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Using previously specified correction parameters. 2022-10-06 04:50:43,805 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits 2022-10-06 04:50:43,805 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits 2022-10-06 04:50:44,861 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Using instrument: NIRSPEC 2022-10-06 04:50:44,862 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - detector: NRS1 2022-10-06 04:50:44,862 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - exp_type: NRS_MSASPEC 2022-10-06 04:50:44,862 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - filter: F170LP 2022-10-06 04:50:44,862 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - grating: G235M 2022-10-06 04:50:44,936 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Working on slit 20 2022-10-06 04:50:44,936 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:50:44,945 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Working on slit 21 2022-10-06 04:50:44,946 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:50:44,954 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Working on slit 1 2022-10-06 04:50:44,955 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:50:44,964 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Working on slit 2 2022-10-06 04:50:44,964 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:50:44,974 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Working on slit 8 2022-10-06 04:50:44,974 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:50:44,984 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Working on slit 10 2022-10-06 04:50:44,984 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:50:44,996 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - Step photom done 2022-10-06 04:50:45,430 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - Step barshadow running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). 2022-10-06 04:50:45,431 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'barshadow', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': True, 'source_type': 'EXTENDED'} 2022-10-06 04:50:46,533 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - Working on slitlet 20 2022-10-06 04:50:46,539 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - Working on slitlet 21 2022-10-06 04:50:46,545 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - Working on slitlet 1 2022-10-06 04:50:46,552 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - Working on slitlet 2 2022-10-06 04:50:46,558 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - Working on slitlet 8 2022-10-06 04:50:46,564 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - Working on slitlet 10 2022-10-06 04:50:46,573 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - Step barshadow done 2022-10-06 04:50:46,974 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Step pathloss running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). 2022-10-06 04:50:46,975 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'pathloss', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': True, 'source_type': 'EXTENDED'} 2022-10-06 04:50:46,982 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Input exposure type is NRS_MSASPEC 2022-10-06 04:50:48,049 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Working on slit 0 2022-10-06 04:50:48,057 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Working on slit 1 2022-10-06 04:50:48,064 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Working on slit 2 2022-10-06 04:50:48,064 - stpipe.Spec2Pipeline.master_background_mos.pathloss - WARNING - No correction provided for slit 2. Skipping 2022-10-06 04:50:48,064 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Working on slit 3 2022-10-06 04:50:48,071 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Working on slit 4 2022-10-06 04:50:48,078 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Working on slit 5 2022-10-06 04:50:48,088 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - Step pathloss done 2022-10-06 04:50:48,553 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - Step flat_field running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). 2022-10-06 04:50:48,555 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'flat_field', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': True} 2022-10-06 04:50:48,562 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - Using flat field from correction pars <MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits> 2022-10-06 04:50:49,631 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - Working on slit 20 2022-10-06 04:50:49,637 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - Working on slit 21 2022-10-06 04:50:49,642 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - Working on slit 1 2022-10-06 04:50:49,648 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - Working on slit 2 2022-10-06 04:50:49,654 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - Working on slit 8 2022-10-06 04:50:49,659 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - Working on slit 10 2022-10-06 04:50:49,669 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - Step flat_field done 2022-10-06 04:50:49,675 - stpipe.Spec2Pipeline.master_background_mos - INFO - Subtracting master background from each MOS source slitlet 2022-10-06 04:50:51,326 - stpipe.Spec2Pipeline.master_background_mos - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:50:51,326 - stpipe.Spec2Pipeline.master_background_mos - INFO - Step master_background_mos done 2022-10-06 04:50:51,771 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). 2022-10-06 04:50:51,773 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'} 2022-10-06 04:50:51,801 - stpipe.Spec2Pipeline.wavecorr - INFO - Using WAVECORR reference file /grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0004.asdf 2022-10-06 04:50:52,848 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a POINT source type in slit 20 2022-10-06 04:50:52,849 - stpipe.Spec2Pipeline.wavecorr - INFO - slit name 20 2022-10-06 04:50:52,915 - stpipe.Spec2Pipeline.wavecorr - INFO - Using wavelength zero-point correction for aperture MOS 2022-10-06 04:50:52,918 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 21 2022-10-06 04:50:52,918 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 1 2022-10-06 04:50:52,918 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a POINT source type in slit 2 2022-10-06 04:50:52,918 - stpipe.Spec2Pipeline.wavecorr - INFO - slit name 2 2022-10-06 04:50:53,026 - stpipe.Spec2Pipeline.wavecorr - INFO - Using wavelength zero-point correction for aperture MOS 2022-10-06 04:50:53,031 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 8 2022-10-06 04:50:53,031 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a POINT source type in slit 10 2022-10-06 04:50:53,031 - stpipe.Spec2Pipeline.wavecorr - INFO - slit name 10 2022-10-06 04:50:53,137 - stpipe.Spec2Pipeline.wavecorr - INFO - Using wavelength zero-point correction for aperture MOS 2022-10-06 04:50:53,146 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr done 2022-10-06 04:50:53,567 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). 2022-10-06 04:50:53,569 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2022-10-06 04:50:58,785 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 20 2022-10-06 04:50:59,753 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 21 2022-10-06 04:51:00,854 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 1 2022-10-06 04:51:05,200 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 2 2022-10-06 04:51:10,262 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 8 2022-10-06 04:51:12,091 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 10 2022-10-06 04:51:18,260 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field done 2022-10-06 04:51:18,731 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). 2022-10-06 04:51:18,733 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None} 2022-10-06 04:51:18,764 - stpipe.Spec2Pipeline.pathloss - INFO - Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits 2022-10-06 04:51:18,822 - stpipe.Spec2Pipeline.pathloss - INFO - Input exposure type is NRS_MSASPEC 2022-10-06 04:51:19,900 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 0 2022-10-06 04:51:19,921 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 1 2022-10-06 04:51:19,941 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 2 2022-10-06 04:51:19,941 - stpipe.Spec2Pipeline.pathloss - WARNING - Source is outside slit. 2022-10-06 04:51:19,941 - stpipe.Spec2Pipeline.pathloss - WARNING - No correction provided for slit 2. Skipping 2022-10-06 04:51:19,941 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 3 2022-10-06 04:51:19,964 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 4 2022-10-06 04:51:19,985 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 5 2022-10-06 04:51:20,010 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss done 2022-10-06 04:51:20,449 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). 2022-10-06 04:51:20,450 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None} 2022-10-06 04:51:20,478 - stpipe.Spec2Pipeline.barshadow - INFO - Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits 2022-10-06 04:51:21,602 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 20 2022-10-06 04:51:21,613 - stpipe.Spec2Pipeline.barshadow - INFO - Bar shadow correction skipped for slitlet 20 (source not uniform) 2022-10-06 04:51:21,619 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 21 2022-10-06 04:51:21,666 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 1 2022-10-06 04:51:21,792 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 2 2022-10-06 04:51:21,805 - stpipe.Spec2Pipeline.barshadow - INFO - Bar shadow correction skipped for slitlet 2 (source not uniform) 2022-10-06 04:51:21,811 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 8 2022-10-06 04:51:21,897 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 10 2022-10-06 04:51:21,909 - stpipe.Spec2Pipeline.barshadow - INFO - Bar shadow correction skipped for slitlet 10 (source not uniform) 2022-10-06 04:51:21,920 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow done 2022-10-06 04:51:22,405 - stpipe.Spec2Pipeline.photom - INFO - Step photom running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). 2022-10-06 04:51:22,406 - stpipe.Spec2Pipeline.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None} 2022-10-06 04:51:22,455 - stpipe.Spec2Pipeline.photom - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits 2022-10-06 04:51:22,455 - stpipe.Spec2Pipeline.photom - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits 2022-10-06 04:51:23,570 - stpipe.Spec2Pipeline.photom - INFO - Using instrument: NIRSPEC 2022-10-06 04:51:23,570 - stpipe.Spec2Pipeline.photom - INFO - detector: NRS1 2022-10-06 04:51:23,570 - stpipe.Spec2Pipeline.photom - INFO - exp_type: NRS_MSASPEC 2022-10-06 04:51:23,570 - stpipe.Spec2Pipeline.photom - INFO - filter: F170LP 2022-10-06 04:51:23,570 - stpipe.Spec2Pipeline.photom - INFO - grating: G235M 2022-10-06 04:51:23,651 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 20 2022-10-06 04:51:23,651 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 1 2022-10-06 04:51:23,660 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 21 2022-10-06 04:51:23,661 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:51:23,670 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 1 2022-10-06 04:51:23,670 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:51:23,680 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 2 2022-10-06 04:51:23,681 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 1 2022-10-06 04:51:23,691 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 8 2022-10-06 04:51:23,691 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 04:51:23,700 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 10 2022-10-06 04:51:23,701 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 1 2022-10-06 04:51:23,716 - stpipe.Spec2Pipeline.photom - INFO - Step photom done 2022-10-06 04:51:24,273 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_cal.fits>,). 2022-10-06 04:51:24,276 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True} 2022-10-06 04:51:24,315 - stpipe.Spec2Pipeline.resample_spec - INFO - No DRIZPARS reffile 2022-10-06 04:51:24,316 - stpipe.Spec2Pipeline.resample_spec - INFO - using: pixfrac=1.0 2022-10-06 04:51:24,316 - stpipe.Spec2Pipeline.resample_spec - INFO - using: kernel='square' 2022-10-06 04:51:24,317 - stpipe.Spec2Pipeline.resample_spec - INFO - using: fillval='INDEF' 2022-10-06 04:51:24,317 - stpipe.Spec2Pipeline.resample_spec - INFO - using: wht_type='ivm' 2022-10-06 04:51:24,317 - stpipe.Spec2Pipeline.resample_spec - INFO - using: pscale_ratio=1.0 2022-10-06 04:51:24,317 - stpipe.Spec2Pipeline.resample_spec - INFO - Reorganizing data from exposure jw00626030001_02103_00001_nrs1_cal.fits 2022-10-06 04:51:25,470 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter kernal: square 2022-10-06 04:51:25,471 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter pixfrac: 1.0 2022-10-06 04:51:25,471 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter fillval: INDEF 2022-10-06 04:51:25,471 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter weight_type: ivm 2022-10-06 04:51:25,632 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2022-10-06 04:51:25,671 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (20, 227) --> (17, 227) 2022-10-06 04:51:25,671 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2022-10-06 04:51:25,710 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (20, 227) --> (17, 227) 2022-10-06 04:51:25,713 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2022-10-06 04:51:25,751 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (20, 227) --> (17, 227) 2022-10-06 04:51:25,753 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2022-10-06 04:51:25,790 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (20, 227) --> (17, 227) 2022-10-06 04:51:25,815 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.156582366 -28.988439604 53.163277324 -28.988439604 53.163277324 -28.977277507 53.156582366 -28.977277507 2022-10-06 04:51:26,057 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter kernal: square 2022-10-06 04:51:26,057 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter pixfrac: 1.0 2022-10-06 04:51:26,057 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter fillval: INDEF 2022-10-06 04:51:26,057 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter weight_type: ivm 2022-10-06 04:51:26,213 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2022-10-06 04:51:26,250 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (20, 271) --> (17, 271) 2022-10-06 04:51:26,250 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2022-10-06 04:51:26,287 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (20, 271) --> (17, 271) 2022-10-06 04:51:26,289 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2022-10-06 04:51:26,326 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (20, 271) --> (17, 271) 2022-10-06 04:51:26,328 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2022-10-06 04:51:26,365 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (20, 271) --> (17, 271) 2022-10-06 04:51:26,390 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.120190780 -29.006357475 53.128020959 -29.006357475 53.128020959 -28.993186531 53.120190780 -28.993186531 2022-10-06 04:51:27,188 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter kernal: square 2022-10-06 04:51:27,188 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter pixfrac: 1.0 2022-10-06 04:51:27,188 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter fillval: INDEF 2022-10-06 04:51:27,188 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter weight_type: ivm 2022-10-06 04:51:27,366 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2022-10-06 04:51:27,457 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (26, 1139) --> (17, 1139) 2022-10-06 04:51:27,465 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2022-10-06 04:51:27,571 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (26, 1139) --> (17, 1139) 2022-10-06 04:51:27,582 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2022-10-06 04:51:27,690 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (26, 1139) --> (17, 1139) 2022-10-06 04:51:27,701 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2022-10-06 04:51:27,811 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (26, 1139) --> (17, 1139) 2022-10-06 04:51:27,875 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.167865518 -29.057217512 53.200631321 -29.057217512 53.200631321 -29.001734113 53.167865518 -29.001734113 2022-10-06 04:51:28,207 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter kernal: square 2022-10-06 04:51:28,207 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter pixfrac: 1.0 2022-10-06 04:51:28,207 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter fillval: INDEF 2022-10-06 04:51:28,208 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter weight_type: ivm 2022-10-06 04:51:28,397 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2022-10-06 04:51:28,472 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (28, 1338) --> (17, 1338) 2022-10-06 04:51:28,477 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2022-10-06 04:51:28,547 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (28, 1338) --> (17, 1338) 2022-10-06 04:51:28,553 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2022-10-06 04:51:28,624 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (28, 1338) --> (17, 1338) 2022-10-06 04:51:28,630 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2022-10-06 04:51:28,703 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (28, 1338) --> (17, 1338) 2022-10-06 04:51:28,747 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.163653293 -29.074886188 53.202246816 -29.074886188 53.202246816 -29.009642486 53.163653293 -29.009642486 2022-10-06 04:51:29,035 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter kernal: square 2022-10-06 04:51:29,035 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter pixfrac: 1.0 2022-10-06 04:51:29,035 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter fillval: INDEF 2022-10-06 04:51:29,035 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter weight_type: ivm 2022-10-06 04:51:29,212 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2022-10-06 04:51:29,264 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (17, 1331) --> (7, 1331) 2022-10-06 04:51:29,266 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2022-10-06 04:51:29,319 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (17, 1331) --> (7, 1331) 2022-10-06 04:51:29,322 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2022-10-06 04:51:29,374 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (17, 1331) --> (7, 1331) 2022-10-06 04:51:29,377 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2022-10-06 04:51:29,429 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (17, 1331) --> (7, 1331) 2022-10-06 04:51:29,460 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.155476534 -29.077396245 53.193458520 -29.077396245 53.193458520 -29.012715021 53.155476534 -29.012715021 2022-10-06 04:51:29,826 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter kernal: square 2022-10-06 04:51:29,827 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter pixfrac: 1.0 2022-10-06 04:51:29,827 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter fillval: INDEF 2022-10-06 04:51:29,827 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter weight_type: ivm 2022-10-06 04:51:30,007 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2022-10-06 04:51:30,076 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (27, 1433) --> (17, 1433) 2022-10-06 04:51:30,080 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2022-10-06 04:51:30,150 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (27, 1433) --> (17, 1433) 2022-10-06 04:51:30,157 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2022-10-06 04:51:30,228 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (27, 1433) --> (17, 1433) 2022-10-06 04:51:30,235 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2022-10-06 04:51:30,307 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (27, 1433) --> (17, 1433) 2022-10-06 04:51:30,346 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.137315522 -29.092869831 53.178361096 -29.092869831 53.178361096 -29.023152836 53.137315522 -29.023152836 2022-10-06 04:51:32,305 - stpipe.Spec2Pipeline.resample_spec - INFO - Saved model in jw00626030001_02103_00001_nrs1_s2d.fits 2022-10-06 04:51:32,305 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec done 2022-10-06 04:51:32,744 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_s2d.fits>,). 2022-10-06 04:51:32,745 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None} 2022-10-06 04:51:32,777 - stpipe.Spec2Pipeline.extract_1d - INFO - Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json 2022-10-06 04:51:32,799 - stpipe.Spec2Pipeline.extract_1d - INFO - Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits 2022-10-06 04:51:32,839 - stpipe.Spec2Pipeline.extract_1d - INFO - Turning on source position correction for exp_type = NRS_MSASPEC 2022-10-06 04:51:32,839 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 20 2022-10-06 04:51:32,867 - stpipe.Spec2Pipeline.extract_1d - WARNING - WCS implies the target is at 852312.72, which is outside the bounding box, 2022-10-06 04:51:32,867 - stpipe.Spec2Pipeline.extract_1d - WARNING - so we can't get spectrum location using the WCS 2022-10-06 04:51:32,867 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: xstart=0, xstop=226, ystart=4.5, ystop=11.5 2022-10-06 04:51:32,953 - stpipe.Spec2Pipeline.extract_1d - INFO - Applying Aperture correction. 2022-10-06 04:51:33,324 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 21 2022-10-06 04:51:33,324 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2022-10-06 04:51:33,335 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: xstart=0, xstop=270, ystart=4.5, ystop=11.5 2022-10-06 04:51:33,434 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 1 2022-10-06 04:51:33,434 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2022-10-06 04:51:33,451 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: xstart=0, xstop=1138, ystart=4.5, ystop=11.5 2022-10-06 04:51:33,666 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 2 2022-10-06 04:51:33,703 - stpipe.Spec2Pipeline.extract_1d - WARNING - WCS implies the target is at 852125.97, which is outside the bounding box, 2022-10-06 04:51:33,703 - stpipe.Spec2Pipeline.extract_1d - WARNING - so we can't get spectrum location using the WCS 2022-10-06 04:51:33,703 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: xstart=0, xstop=1337, ystart=4.5, ystop=11.5 2022-10-06 04:51:33,935 - stpipe.Spec2Pipeline.extract_1d - INFO - Applying Aperture correction. 2022-10-06 04:51:36,021 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 8 2022-10-06 04:51:36,021 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2022-10-06 04:51:36,034 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: xstart=0, xstop=1330, ystart=-0.5, ystop=6.5 2022-10-06 04:51:36,042 - stpipe.Spec2Pipeline.extract_1d - WARNING - Source extraction limit extends below -0.5 2022-10-06 04:51:36,042 - stpipe.Spec2Pipeline.extract_1d - WARNING - Source extraction limit extends above 6.5 2022-10-06 04:51:36,279 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 10 2022-10-06 04:51:36,320 - stpipe.Spec2Pipeline.extract_1d - WARNING - WCS implies the target is at 884989.53, which is outside the bounding box, 2022-10-06 04:51:36,320 - stpipe.Spec2Pipeline.extract_1d - WARNING - so we can't get spectrum location using the WCS 2022-10-06 04:51:36,321 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: xstart=0, xstop=1432, ystart=4.5, ystop=11.5 2022-10-06 04:51:36,570 - stpipe.Spec2Pipeline.extract_1d - INFO - Applying Aperture correction. 2022-10-06 04:51:39,043 - stpipe.Spec2Pipeline.extract_1d - INFO - Saved model in jw00626030001_02103_00001_nrs1_x1d.fits 2022-10-06 04:51:39,044 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d done 2022-10-06 04:51:39,044 - stpipe.Spec2Pipeline - INFO - Finished processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/jw00626030001_02103_00001_nrs1 2022-10-06 04:51:39,044 - stpipe.Spec2Pipeline - INFO - Ending calwebb_spec2 2022-10-06 04:51:39,044 - stpipe.Spec2Pipeline - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 04:51:40,692 - stpipe.Spec2Pipeline - INFO - Saved model in jw00626030001_02103_00001_nrs1_cal.fits 2022-10-06 04:51:40,692 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline done -------------------------------Captured log setup------------------------------- INFO stpipe.Spec2Pipeline:step.py:366 Spec2Pipeline instance created. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:366 BackgroundStep instance created. INFO stpipe.Spec2Pipeline.assign_wcs:step.py:366 AssignWcsStep instance created. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:366 ImprintStep instance created. INFO stpipe.Spec2Pipeline.msa_flagging:step.py:366 MSAFlagOpenStep instance created. INFO stpipe.Spec2Pipeline.extract_2d:step.py:366 Extract2dStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos:step.py:366 MasterBackgroundMosStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:step.py:366 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:step.py:366 PathLossStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:step.py:366 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.photom:step.py:366 PhotomStep instance created. INFO stpipe.Spec2Pipeline.wavecorr:step.py:366 WavecorrStep instance created. INFO stpipe.Spec2Pipeline.flat_field:step.py:366 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.srctype:step.py:366 SourceTypeStep instance created. INFO stpipe.Spec2Pipeline.straylight:step.py:366 StraylightStep instance created. INFO stpipe.Spec2Pipeline.fringe:step.py:366 FringeStep instance created. INFO stpipe.Spec2Pipeline.pathloss:step.py:366 PathLossStep instance created. INFO stpipe.Spec2Pipeline.barshadow:step.py:366 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.wfss_contam:step.py:366 WfssContamStep instance created. INFO stpipe.Spec2Pipeline.photom:step.py:366 PhotomStep instance created. INFO stpipe.Spec2Pipeline.resample_spec:step.py:366 ResampleSpecStep instance created. INFO stpipe.Spec2Pipeline.cube_build:step.py:366 CubeBuildStep instance created. INFO stpipe.Spec2Pipeline.extract_1d:step.py:366 Extract1dStep instance created. INFO stpipe.Spec2Pipeline:step.py:430 Step Spec2Pipeline running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/jw00626030001_02103_00001_nrs1_rate.fits',). INFO stpipe.Spec2Pipeline:step.py:434 Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_bsub': False, 'fail_on_exception': True, 'save_wfss_esec': False, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000}, 'master_background_mos': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'force_subtract': False, 'save_background': False, 'user_background': 'jw00626030001_02103_00001_nrs1_masterbg1d.fits', 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'source_type': None}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'wfss_contam': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_simulated_image': False, 'save_contam_images': False, 'maximum_cores': 'none'}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'drizzle', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None}}} INFO stpipe.Spec2Pipeline:pipeline.py:358 Prefetching reference files for dataset: 'jw00626030001_02103_00001_nrs1_rate.fits' reftypes = ['apcorr', 'area', 'barshadow', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'mrsxartcorr', 'msa', 'msaoper', 'ote', 'pathloss', 'photom', 'regions', 'sflat', 'speckernel', 'specprofile', 'spectrace', 'specwcs', 'wavecorr', 'wavelengthrange', 'wavemap', 'wfssbkg'] INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for BARSHADOW reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for CUBEPAR reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DISTORTION reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DRIZPARS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FILTEROFFSET reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FLAT reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FRINGE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for IFUFORE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for IFUPOST reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for IFUSLICER reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for MRSXARTCORR reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for REGIONS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECKERNEL reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECPROFILE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECTRACE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECWCS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WAVEMAP reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WFSSBKG reference file is 'N/A'. INFO stpipe.Spec2Pipeline:calwebb_spec2.py:92 Starting calwebb_spec2 ... INFO stpipe.Spec2Pipeline:calwebb_spec2.py:110 Processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/jw00626030001_02103_00001_nrs1 INFO stpipe.Spec2Pipeline:calwebb_spec2.py:176 Working on input /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/jw00626030001_02103_00001_nrs1_rate.fits ... DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:347 Science data does not allow direct background subtraction. Skipping "bkg_subtract". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:359 Science data does not allow imprint processing. Skipping "imprint_subtraction". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:370 Science data does not allow stray light correction. Skipping "straylight". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:375 Science data does not allow fringe correction. Skipping "fringe". INFO stpipe.Spec2Pipeline.assign_wcs:step.py:430 Step assign_wcs running with args (<ImageModel(2048, 2048) from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.assign_wcs:step.py:434 Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:80 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:80 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.Spec2Pipeline.assign_wcs:nirspec.py:605 msa_data with msa_metadata_id = 5 [(1, 5, 3, 152, 36, 227, 'N', 'OPEN', -0.4635, 0.6463, 1, 'Y'), (1, 5, 3, 152, 37, 227, 'Y', 'OPEN', nan, nan, 1, 'N'), (1, 5, 3, 152, 38, 227, 'Y', 'OPEN', nan, nan, 1, 'N'), (2, 5, 3, 225, 82, 279, 'N', 'OPEN', 0.195, 1.0469, 1, 'Y'), (2, 5, 3, 225, 83, 279, 'Y', 'OPEN', nan, nan, 1, 'N'), (2, 5, 3, 225, 84, 279, 'Y', 'OPEN', nan, nan, 1, 'N'), (8, 5, 3, 218, 136, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (10, 5, 4, 251, 22, 2315, 'N', 'OPEN', 0.14859998, 0.8781, 1, 'Y'), (10, 5, 4, 251, 23, 2315, 'Y', 'OPEN', nan, nan, 1, 'N'), (10, 5, 4, 251, 24, 2315, 'Y', 'OPEN', nan, nan, 1, 'N'), (20, 5, 1, 251, 22, 443, 'N', 'OPEN', 0.14859998, 0.8781, 1, 'Y'), (20, 5, 1, 251, 23, 443, 'Y', 'OPEN', nan, nan, 1, 'N'), (20, 5, 1, 251, 24, 443, 'Y', 'OPEN', nan, nan, 1, 'N'), (21, 5, 2, 251, 22, 482, 'N', 'OPEN', 0.14859998, 0.8781, 1, 'Y'), (21, 5, 2, 251, 23, 482, 'Y', 'OPEN', nan, nan, 1, 'N'), (21, 5, 2, 251, 24, 482, 'Y', 'OPEN', nan, nan, 1, 'N')] DEBUG stpipe.Spec2Pipeline.assign_wcs:nirspec.py:605 msa_data with msa_metadata_id = 5 [(1, 5, 3, 152, 36, 227, 'N', 'OPEN', -0.4635, 0.6463, 1, 'Y'), (1, 5, 3, 152, 37, 227, 'Y', 'OPEN', nan, nan, 1, 'N'), (1, 5, 3, 152, 38, 227, 'Y', 'OPEN', nan, nan, 1, 'N'), (2, 5, 3, 225, 82, 279, 'N', 'OPEN', 0.195, 1.0469, 1, 'Y'), (2, 5, 3, 225, 83, 279, 'Y', 'OPEN', nan, nan, 1, 'N'), (2, 5, 3, 225, 84, 279, 'Y', 'OPEN', nan, nan, 1, 'N'), (8, 5, 3, 218, 136, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (10, 5, 4, 251, 22, 2315, 'N', 'OPEN', 0.14859998, 0.8781, 1, 'Y'), (10, 5, 4, 251, 23, 2315, 'Y', 'OPEN', nan, nan, 1, 'N'), (10, 5, 4, 251, 24, 2315, 'Y', 'OPEN', nan, nan, 1, 'N'), (20, 5, 1, 251, 22, 443, 'N', 'OPEN', 0.14859998, 0.8781, 1, 'Y'), (20, 5, 1, 251, 23, 443, 'Y', 'OPEN', nan, nan, 1, 'N'), (20, 5, 1, 251, 24, 443, 'Y', 'OPEN', nan, nan, 1, 'N'), (21, 5, 2, 251, 22, 482, 'N', 'OPEN', 0.14859998, 0.8781, 1, 'Y'), (21, 5, 2, 251, 23, 482, 'Y', 'OPEN', nan, nan, 1, 'N'), (21, 5, 2, 251, 24, 482, 'Y', 'OPEN', nan, nan, 1, 'N')] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:606 Retrieving open MSA slitlets for msa_metadata_id = 5 and dither_index = 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:606 Retrieving open MSA slitlets for msa_metadata_id = 5 and dither_index = 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:646 Slitlet_id 8 is background only; assigned source_id = 2316 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:646 Slitlet_id 8 is background only; assigned source_id = 2316 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1375 gwa_ytilt is 0.139291257 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1375 gwa_ytilt is 0.139291257 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1376 gwa_xtilt is 0.316133170999999 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1376 gwa_xtilt is 0.316133170999999 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1380 theta_y correction: 0.005914304200586192 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1380 theta_y correction: 0.005914304200586192 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:424 Slits projected on detector NRS1: [1, 2, 8, 10, 20, 21] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:424 Slits projected on detector NRS1: [1, 2, 8, 10, 20, 21] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:308 Computing WCS for 6 open slitlets INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:308 Computing WCS for 6 open slitlets INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1375 gwa_ytilt is 0.139291257 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1375 gwa_ytilt is 0.139291257 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1376 gwa_xtilt is 0.316133170999999 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1376 gwa_xtilt is 0.316133170999999 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1380 theta_y correction: 0.005914304200586192 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1380 theta_y correction: 0.005914304200586192 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:330 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:330 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 1 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 1 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 1 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 1 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 3 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 3 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 1 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 1 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 5 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 5 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:62 Created a NIRSPEC nrs_msaspec pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None, 'msametafile': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_3pointnod_1_msa.fits'} INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:62 Created a NIRSPEC nrs_msaspec pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None, 'msametafile': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_3pointnod_1_msa.fits'} INFO stpipe.Spec2Pipeline.assign_wcs:assign_wcs.py:96 COMPLETED assign_wcs INFO stpipe.Spec2Pipeline.assign_wcs:assign_wcs.py:96 COMPLETED assign_wcs INFO stpipe.Spec2Pipeline.assign_wcs:step.py:546 Step assign_wcs done INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:430 Step bkg_subtract running with args (<ImageModel(2048, 2048) from jw00626030001_02103_00001_nrs1_rate.fits>, []). INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:434 Step bkg_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None} INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:546 Step bkg_subtract done INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:430 Step imprint_subtract running with args (<ImageModel(2048, 2048) from jw00626030001_02103_00001_nrs1_rate.fits>, []). INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:434 Step imprint_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'} INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:546 Step imprint_subtract done INFO stpipe.Spec2Pipeline.msa_flagging:step.py:430 Step msa_flagging running with args (<ImageModel(2048, 2048) from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.msa_flagging:step.py:434 Step msa_flagging parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'} INFO stpipe.Spec2Pipeline.msa_flagging:msaflagopen_step.py:27 Using reference file /grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json INFO stpipe.JwstStep:step.py:366 JwstStep instance created. INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1375 gwa_ytilt is 0.139291257 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1375 gwa_ytilt is 0.139291257 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1376 gwa_xtilt is 0.316133170999999 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1376 gwa_xtilt is 0.316133170999999 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1380 theta_y correction: 0.005914304200586192 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1380 theta_y correction: 0.005914304200586192 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:330 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:330 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1020 There are 5 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1020 There are 5 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1020 There are 3 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1020 There are 3 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1020 There are 9 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1020 There are 9 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1020 There are 3 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1020 There are 3 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1020 There are 0 open slits in quadrant 5 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1020 There are 0 open slits in quadrant 5 INFO stpipe.Spec2Pipeline.msa_flagging:step.py:546 Step msa_flagging done INFO stpipe.Spec2Pipeline.extract_2d:step.py:430 Step extract_2d running with args (<ImageModel(2048, 2048) from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.extract_2d:step.py:434 Step extract_2d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000} INFO stpipe.Spec2Pipeline.extract_2d:extract_2d.py:61 EXP_TYPE is NRS_MSASPEC INFO stpipe.Spec2Pipeline.extract_2d:extract_2d.py:61 EXP_TYPE is NRS_MSASPEC INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 20 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 20 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1821 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1821 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1916 1936 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1916 1936 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 53.157040698 -28.977246946 53.156582655 -28.977448677 53.156610178 -28.977497225 53.157068225 -28.977295501 INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 53.157040698 -28.977246946 53.156582655 -28.977448677 53.156610178 -28.977497225 53.157068225 -28.977295501 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.157040698 -28.977246946 53.156582655 -28.977448677 53.156610178 -28.977497225 53.157068225 -28.977295501 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.157040698 -28.977246946 53.156582655 -28.977448677 53.156610178 -28.977497225 53.157068225 -28.977295501 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 21 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 21 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1777 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1777 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 709 729 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 709 729 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 53.120636026 -28.993156166 53.120187414 -28.993353248 53.120214704 -28.993401359 53.120663318 -28.993204282 INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 53.120636026 -28.993156166 53.120187414 -28.993353248 53.120214704 -28.993401359 53.120663318 -28.993204282 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.120636026 -28.993156166 53.120187414 -28.993353248 53.120214704 -28.993401359 53.120663318 -28.993204282 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.120636026 -28.993156166 53.120187414 -28.993353248 53.120214704 -28.993401359 53.120663318 -28.993204282 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 909 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 909 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1846 1872 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1846 1872 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 53.168324586 -29.001703828 53.167865339 -29.001902421 53.167893185 -29.001950811 53.168352436 -29.001752223 INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 53.168324586 -29.001703828 53.167865339 -29.001902421 53.167893185 -29.001950811 53.168352436 -29.001752223 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.168324586 -29.001703828 53.167865339 -29.001902421 53.167893185 -29.001950811 53.168352436 -29.001752223 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.168324586 -29.001703828 53.167865339 -29.001902421 53.167893185 -29.001950811 53.168352436 -29.001752223 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 2 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 2 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 710 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 710 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1615 1643 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1615 1643 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 53.164110352 -29.009612208 53.163652590 -29.009809455 53.163680465 -29.009857765 53.164138231 -29.009660524 INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 53.164110352 -29.009612208 53.163652590 -29.009809455 53.163680465 -29.009857765 53.164138231 -29.009660524 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.164110352 -29.009612208 53.163652590 -29.009809455 53.163680465 -29.009857765 53.164138231 -29.009660524 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.164110352 -29.009612208 53.163652590 -29.009809455 53.163680465 -29.009857765 53.164138231 -29.009660524 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 8 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 8 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 717 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 717 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1355 1372 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1355 1372 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 53.155628964 -29.012684914 53.155472777 -29.012752250 53.155500576 -29.012800470 53.155656764 -29.012733136 INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 53.155628964 -29.012684914 53.155472777 -29.012752250 53.155500576 -29.012800470 53.155656764 -29.012733136 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.155628964 -29.012684914 53.155472777 -29.012752250 53.155500576 -29.012800470 53.155656764 -29.012733136 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.155628964 -29.012684914 53.155472777 -29.012752250 53.155500576 -29.012800470 53.155656764 -29.012733136 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 10 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 10 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 605 2038 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 605 2038 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 708 735 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 708 735 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 53.137763493 -29.023122380 53.137312898 -29.023316550 53.137340565 -29.023364583 53.137791165 -29.023170417 INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 53.137763493 -29.023122380 53.137312898 -29.023316550 53.137340565 -29.023364583 53.137791165 -29.023170417 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.137763493 -29.023122380 53.137312898 -29.023316550 53.137340565 -29.023364583 53.137791165 -29.023170417 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.137763493 -29.023122380 53.137312898 -29.023316550 53.137340565 -29.023364583 53.137791165 -29.023170417 INFO stpipe.Spec2Pipeline.extract_2d:step.py:546 Step extract_2d done INFO stpipe.Spec2Pipeline.srctype:step.py:430 Step srctype running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.srctype:step.py:434 Step srctype parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'source_type': None} INFO stpipe.Spec2Pipeline.srctype:srctype.py:39 Input EXP_TYPE is NRS_MSASPEC INFO stpipe.Spec2Pipeline.srctype:srctype.py:39 Input EXP_TYPE is NRS_MSASPEC INFO stpipe.Spec2Pipeline.srctype:srctype.py:164 source_id=443, stellarity=1.0000, type=POINT INFO stpipe.Spec2Pipeline.srctype:srctype.py:164 source_id=443, stellarity=1.0000, type=POINT INFO stpipe.Spec2Pipeline.srctype:srctype.py:164 source_id=482, stellarity=0.2000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:164 source_id=482, stellarity=0.2000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:164 source_id=227, stellarity=0.2000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:164 source_id=227, stellarity=0.2000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:164 source_id=279, stellarity=1.0000, type=POINT INFO stpipe.Spec2Pipeline.srctype:srctype.py:164 source_id=279, stellarity=1.0000, type=POINT INFO stpipe.Spec2Pipeline.srctype:srctype.py:164 source_id=2316, stellarity=0.0000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:164 source_id=2316, stellarity=0.0000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:164 source_id=2315, stellarity=0.8000, type=POINT INFO stpipe.Spec2Pipeline.srctype:srctype.py:164 source_id=2315, stellarity=0.8000, type=POINT INFO stpipe.Spec2Pipeline.srctype:step.py:546 Step srctype done INFO stpipe.Spec2Pipeline.master_background_mos:step.py:430 Step master_background_mos running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background_mos:step.py:434 Step master_background_mos parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'force_subtract': False, 'save_background': False, 'user_background': 'jw00626030001_02103_00001_nrs1_masterbg1d.fits', 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}}} INFO stpipe.Spec2Pipeline.master_background_mos:master_background_mos_step.py:114 Calculating master background from user-supplied background jw00626030001_02103_00001_nrs1_masterbg1d.fits INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:step.py:430 Step flat_field running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:step.py:434 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field_step.py:74 Input is MultiSlitModel of exposure type NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field_step.py:201 No reference found for type FLAT DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field_step.py:199 Using FFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field_step.py:199 Using SFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field_step.py:199 Using DFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 20 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 20 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 1143 out of 4540 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 1143 out of 4540 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 21 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 21 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 1325 out of 5420 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 1325 out of 5420 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:2010 1 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:2010 1 flat-field values <= 0 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 1 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 1 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 12529 out of 29614 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 12529 out of 29614 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:2010 20 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:2010 20 flat-field values <= 0 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 2 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 2 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 17362 out of 37464 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 17362 out of 37464 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:2010 12 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:2010 12 flat-field values <= 0 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 8 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 8 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 15771 out of 22627 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 15771 out of 22627 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:2010 14 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:2010 14 flat-field values <= 0 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 10 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 10 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 17030 out of 38691 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 17030 out of 38691 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:2010 74 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:2010 74 flat-field values <= 0 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:step.py:546 Step flat_field done INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:step.py:430 Step pathloss running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:step.py:434 Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': 'EXTENDED'} INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss_step.py:38 Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:232 Input exposure type is NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:232 Input exposure type is NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 0 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 0 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 1 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 1 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 2 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 2 WARNING stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:757 Source is outside slit. WARNING stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:757 Source is outside slit. WARNING stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:405 No correction provided for slit 2. Skipping WARNING stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:405 No correction provided for slit 2. Skipping INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 3 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 3 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 4 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 4 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 5 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 5 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:step.py:546 Step pathloss done INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:step.py:430 Step barshadow running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:step.py:434 Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': 'EXTENDED'} INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:barshadow_step.py:58 Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits DEBUG stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 20 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 20 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 21 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 21 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 1 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 1 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 2 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 2 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:step.py:546 Step barshadow done INFO stpipe.Spec2Pipeline.master_background_mos.photom:step.py:430 Step photom running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background_mos.photom:step.py:434 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': 'EXTENDED'} DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom_step.py:35 Input is MultiSlitModel INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom_step.py:55 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom_step.py:56 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:144 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:144 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:145 detector: NRS1 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:145 detector: NRS1 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:146 exp_type: NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:146 exp_type: NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:148 filter: F170LP INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:148 filter: F170LP INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:152 grating: G235M INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:152 grating: G235M INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 20 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 20 DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 21 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 21 DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 1 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 1 DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 2 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 2 DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 8 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 8 DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 10 DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:step.py:546 Step photom done DEBUG stpipe.Spec2Pipeline.master_background_mos:master_background_mos_step.py:243 User background provided <MultiCombinedSpecModel from jw00626030001_02103_00001_nrs1_masterbg1d.fits> INFO stpipe.Spec2Pipeline.master_background_mos:nirspec_utils.py:69 Interpolating 1D master background to all MOS 2D slitlets INFO stpipe.Spec2Pipeline.master_background_mos:nirspec_utils.py:69 Interpolating 1D master background to all MOS 2D slitlets INFO stpipe.Spec2Pipeline.master_background_mos:expand_to_2d.py:160 Expanding background for slit 20 INFO stpipe.Spec2Pipeline.master_background_mos:expand_to_2d.py:160 Expanding background for slit 20 INFO stpipe.Spec2Pipeline.master_background_mos:expand_to_2d.py:160 Expanding background for slit 21 INFO stpipe.Spec2Pipeline.master_background_mos:expand_to_2d.py:160 Expanding background for slit 21 INFO stpipe.Spec2Pipeline.master_background_mos:expand_to_2d.py:160 Expanding background for slit 1 INFO stpipe.Spec2Pipeline.master_background_mos:expand_to_2d.py:160 Expanding background for slit 1 INFO stpipe.Spec2Pipeline.master_background_mos:expand_to_2d.py:160 Expanding background for slit 2 INFO stpipe.Spec2Pipeline.master_background_mos:expand_to_2d.py:160 Expanding background for slit 2 INFO stpipe.Spec2Pipeline.master_background_mos:expand_to_2d.py:160 Expanding background for slit 8 INFO stpipe.Spec2Pipeline.master_background_mos:expand_to_2d.py:160 Expanding background for slit 8 INFO stpipe.Spec2Pipeline.master_background_mos:expand_to_2d.py:160 Expanding background for slit 10 INFO stpipe.Spec2Pipeline.master_background_mos:expand_to_2d.py:160 Expanding background for slit 10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:step.py:430 Step photom running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background_mos.photom:step.py:434 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'photom', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': True, 'source_type': 'EXTENDED'} DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom_step.py:35 Input is MultiSlitModel INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom_step.py:46 Using previously specified correction parameters. INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom_step.py:55 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom_step.py:56 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:144 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:144 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:145 detector: NRS1 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:145 detector: NRS1 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:146 exp_type: NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:146 exp_type: NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:148 filter: F170LP INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:148 filter: F170LP INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:152 grating: G235M INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:152 grating: G235M INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 20 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 20 DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 21 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 21 DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 1 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 1 DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 2 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 2 DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 8 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 8 DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:250 Working on slit 10 DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background_mos.photom:step.py:546 Step photom done INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:step.py:430 Step barshadow running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:step.py:434 Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'barshadow', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': True, 'source_type': 'EXTENDED'} DEBUG stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 20 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 20 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 21 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 21 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 1 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 1 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 2 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 2 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:step.py:546 Step barshadow done INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:step.py:430 Step pathloss running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:step.py:434 Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'pathloss', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': True, 'source_type': 'EXTENDED'} INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:232 Input exposure type is NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:232 Input exposure type is NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 0 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 0 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 1 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 1 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 2 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 2 WARNING stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:405 No correction provided for slit 2. Skipping WARNING stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:405 No correction provided for slit 2. Skipping INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 3 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 3 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 4 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 4 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 5 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:pathloss.py:395 Working on slit 5 INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:step.py:546 Step pathloss done INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:step.py:430 Step flat_field running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:step.py:434 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'flat_field', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': True} DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field_step.py:74 Input is MultiSlitModel of exposure type NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field_step.py:110 Using flat field from correction pars <MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits> DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 20 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 20 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 21 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 21 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 1 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 1 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 2 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 2 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 8 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 8 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 10 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:flat_field.py:367 Working on slit 10 INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:step.py:546 Step flat_field done INFO stpipe.Spec2Pipeline.master_background_mos:nirspec_utils.py:37 Subtracting master background from each MOS source slitlet INFO stpipe.Spec2Pipeline.master_background_mos:nirspec_utils.py:37 Subtracting master background from each MOS source slitlet INFO stpipe.Spec2Pipeline.master_background_mos:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Spec2Pipeline.master_background_mos:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Spec2Pipeline.master_background_mos:step.py:546 Step master_background_mos done INFO stpipe.Spec2Pipeline.wavecorr:step.py:430 Step wavecorr running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.wavecorr:step.py:434 Step wavecorr parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'} INFO stpipe.Spec2Pipeline.wavecorr:wavecorr_step.py:56 Using WAVECORR reference file /grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0004.asdf INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:244 Detected a POINT source type in slit 20 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:244 Detected a POINT source type in slit 20 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:116 slit name 20 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:116 slit name 20 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:170 Using wavelength zero-point correction for aperture MOS INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:170 Using wavelength zero-point correction for aperture MOS INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:244 Detected a EXTENDED source type in slit 21 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:244 Detected a EXTENDED source type in slit 21 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:244 Detected a EXTENDED source type in slit 1 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:244 Detected a EXTENDED source type in slit 1 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:244 Detected a POINT source type in slit 2 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:244 Detected a POINT source type in slit 2 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:116 slit name 2 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:116 slit name 2 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:170 Using wavelength zero-point correction for aperture MOS INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:170 Using wavelength zero-point correction for aperture MOS INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:244 Detected a EXTENDED source type in slit 8 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:244 Detected a EXTENDED source type in slit 8 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:244 Detected a POINT source type in slit 10 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:244 Detected a POINT source type in slit 10 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:116 slit name 10 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:116 slit name 10 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:170 Using wavelength zero-point correction for aperture MOS INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:170 Using wavelength zero-point correction for aperture MOS INFO stpipe.Spec2Pipeline.wavecorr:step.py:546 Step wavecorr done INFO stpipe.Spec2Pipeline.flat_field:step.py:430 Step flat_field running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.flat_field:step.py:434 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:74 Input is MultiSlitModel of exposure type NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:201 No reference found for type FLAT DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:199 Using FFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:199 Using SFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:199 Using DFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit 20 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit 20 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 1145 out of 4540 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 1145 out of 4540 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit 21 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit 21 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 1325 out of 5420 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 1325 out of 5420 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 1 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 1 flat-field values <= 0 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit 1 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit 1 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 12529 out of 29614 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 12529 out of 29614 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 20 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 20 flat-field values <= 0 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit 2 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit 2 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 17373 out of 37464 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 17373 out of 37464 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 12 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 12 flat-field values <= 0 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit 8 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit 8 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 15771 out of 22627 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 15771 out of 22627 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 14 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 14 flat-field values <= 0 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit 10 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit 10 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 17037 out of 38691 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 17037 out of 38691 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 75 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 75 flat-field values <= 0 INFO stpipe.Spec2Pipeline.flat_field:step.py:546 Step flat_field done INFO stpipe.Spec2Pipeline.pathloss:step.py:430 Step pathloss running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.pathloss:step.py:434 Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None} INFO stpipe.Spec2Pipeline.pathloss:pathloss_step.py:38 Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:232 Input exposure type is NRS_MSASPEC INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:232 Input exposure type is NRS_MSASPEC INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:395 Working on slit 0 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:395 Working on slit 0 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:395 Working on slit 1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:395 Working on slit 1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:395 Working on slit 2 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:395 Working on slit 2 WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:757 Source is outside slit. WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:757 Source is outside slit. WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:405 No correction provided for slit 2. Skipping WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:405 No correction provided for slit 2. Skipping INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:395 Working on slit 3 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:395 Working on slit 3 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:395 Working on slit 4 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:395 Working on slit 4 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:395 Working on slit 5 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:395 Working on slit 5 INFO stpipe.Spec2Pipeline.pathloss:step.py:546 Step pathloss done INFO stpipe.Spec2Pipeline.barshadow:step.py:430 Step barshadow running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.barshadow:step.py:434 Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None} INFO stpipe.Spec2Pipeline.barshadow:barshadow_step.py:58 Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits DEBUG stpipe.Spec2Pipeline.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 20 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 20 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:170 Bar shadow correction skipped for slitlet 20 (source not uniform) INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:170 Bar shadow correction skipped for slitlet 20 (source not uniform) INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 21 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 21 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 1 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 1 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 2 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 2 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:170 Bar shadow correction skipped for slitlet 2 (source not uniform) INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:170 Bar shadow correction skipped for slitlet 2 (source not uniform) INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:170 Bar shadow correction skipped for slitlet 10 (source not uniform) INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:170 Bar shadow correction skipped for slitlet 10 (source not uniform) INFO stpipe.Spec2Pipeline.barshadow:step.py:546 Step barshadow done INFO stpipe.Spec2Pipeline.photom:step.py:430 Step photom running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.photom:step.py:434 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None} DEBUG stpipe.Spec2Pipeline.photom:photom_step.py:35 Input is MultiSlitModel INFO stpipe.Spec2Pipeline.photom:photom_step.py:55 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits INFO stpipe.Spec2Pipeline.photom:photom_step.py:56 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits INFO stpipe.Spec2Pipeline.photom:photom.py:144 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.photom:photom.py:144 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.photom:photom.py:145 detector: NRS1 INFO stpipe.Spec2Pipeline.photom:photom.py:145 detector: NRS1 INFO stpipe.Spec2Pipeline.photom:photom.py:146 exp_type: NRS_MSASPEC INFO stpipe.Spec2Pipeline.photom:photom.py:146 exp_type: NRS_MSASPEC INFO stpipe.Spec2Pipeline.photom:photom.py:148 filter: F170LP INFO stpipe.Spec2Pipeline.photom:photom.py:148 filter: F170LP INFO stpipe.Spec2Pipeline.photom:photom.py:152 grating: G235M INFO stpipe.Spec2Pipeline.photom:photom.py:152 grating: G235M INFO stpipe.Spec2Pipeline.photom:photom.py:250 Working on slit 20 INFO stpipe.Spec2Pipeline.photom:photom.py:250 Working on slit 20 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:250 Working on slit 21 INFO stpipe.Spec2Pipeline.photom:photom.py:250 Working on slit 21 DEBUG stpipe.Spec2Pipeline.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:250 Working on slit 1 INFO stpipe.Spec2Pipeline.photom:photom.py:250 Working on slit 1 DEBUG stpipe.Spec2Pipeline.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:250 Working on slit 2 INFO stpipe.Spec2Pipeline.photom:photom.py:250 Working on slit 2 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:250 Working on slit 8 INFO stpipe.Spec2Pipeline.photom:photom.py:250 Working on slit 8 DEBUG stpipe.Spec2Pipeline.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:250 Working on slit 10 INFO stpipe.Spec2Pipeline.photom:photom.py:250 Working on slit 10 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:step.py:546 Step photom done INFO stpipe.Spec2Pipeline.resample_spec:step.py:430 Step resample_spec running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_cal.fits>,). INFO stpipe.Spec2Pipeline.resample_spec:step.py:434 Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True} INFO stpipe.Spec2Pipeline.resample_spec:resample_spec_step.py:60 No DRIZPARS reffile INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: pixfrac=1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: pixfrac=1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: kernel='square' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: kernel='square' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: fillval='INDEF' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: fillval='INDEF' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: wht_type='ivm' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: wht_type='ivm' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: pscale_ratio=1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: pscale_ratio=1.0 INFO stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:37 Reorganizing data from exposure jw00626030001_02103_00001_nrs1_cal.fits INFO stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:37 Reorganizing data from exposure jw00626030001_02103_00001_nrs1_cal.fits DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 443 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 443 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 482 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 482 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 227 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 227 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 279 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 279 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 2316 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 2316 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 2315 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 2315 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 19.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 19.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (20, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (20, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (20, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (20, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (17, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (17, 227) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (20, 227) --> (17, 227) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (20, 227) --> (17, 227) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 19.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 19.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (20, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (20, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (20, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (20, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 227) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (20, 227) --> (17, 227) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (20, 227) --> (17, 227) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 19.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 19.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (20, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (20, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (20, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (20, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 227) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (20, 227) --> (17, 227) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (20, 227) --> (17, 227) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 19.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 19.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (20, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (20, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (20, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (20, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 227) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (20, 227) --> (17, 227) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (20, 227) --> (17, 227) INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 53.156582366 -28.988439604 53.163277324 -28.988439604 53.163277324 -28.977277507 53.156582366 -28.977277507 INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 53.156582366 -28.988439604 53.163277324 -28.988439604 53.163277324 -28.977277507 53.156582366 -28.977277507 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 19.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 19.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (20, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (20, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (20, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (20, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (17, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (17, 271) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (20, 271) --> (17, 271) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (20, 271) --> (17, 271) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 19.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 19.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (20, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (20, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (20, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (20, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 271) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (20, 271) --> (17, 271) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (20, 271) --> (17, 271) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 19.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 19.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (20, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (20, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (20, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (20, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 271) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (20, 271) --> (17, 271) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (20, 271) --> (17, 271) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 19.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 19.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (20, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (20, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (20, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (20, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 271) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (20, 271) --> (17, 271) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (20, 271) --> (17, 271) INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 53.120190780 -29.006357475 53.128020959 -29.006357475 53.128020959 -28.993186531 53.120190780 -28.993186531 INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 53.120190780 -29.006357475 53.128020959 -29.006357475 53.128020959 -28.993186531 53.120190780 -28.993186531 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 25.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 25.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (26, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (26, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (26, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (26, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (17, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (17, 1139) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (26, 1139) --> (17, 1139) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (26, 1139) --> (17, 1139) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 25.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 25.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (26, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (26, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (26, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (26, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1139) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (26, 1139) --> (17, 1139) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (26, 1139) --> (17, 1139) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 25.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 25.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (26, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (26, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (26, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (26, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1139) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (26, 1139) --> (17, 1139) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (26, 1139) --> (17, 1139) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 25.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 25.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (26, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (26, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (26, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (26, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1139) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (26, 1139) --> (17, 1139) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (26, 1139) --> (17, 1139) INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 53.167865518 -29.057217512 53.200631321 -29.057217512 53.200631321 -29.001734113 53.167865518 -29.001734113 INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 53.167865518 -29.057217512 53.200631321 -29.057217512 53.200631321 -29.001734113 53.167865518 -29.001734113 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (28, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (28, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (28, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (28, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (17, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (17, 1338) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (28, 1338) --> (17, 1338) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (28, 1338) --> (17, 1338) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (28, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (28, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (28, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (28, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1338) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (28, 1338) --> (17, 1338) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (28, 1338) --> (17, 1338) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (28, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (28, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (28, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (28, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1338) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (28, 1338) --> (17, 1338) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (28, 1338) --> (17, 1338) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (28, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (28, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (28, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (28, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1338) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (28, 1338) --> (17, 1338) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (28, 1338) --> (17, 1338) INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 53.163653293 -29.074886188 53.202246816 -29.074886188 53.202246816 -29.009642486 53.163653293 -29.009642486 INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 53.163653293 -29.074886188 53.202246816 -29.074886188 53.202246816 -29.009642486 53.163653293 -29.009642486 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 16.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 16.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (17, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (17, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (17, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (17, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (7, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (7, 1331) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (17, 1331) --> (7, 1331) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (17, 1331) --> (7, 1331) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 16.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 16.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (17, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (17, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (17, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (17, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (7, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (7, 1331) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (17, 1331) --> (7, 1331) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (17, 1331) --> (7, 1331) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 16.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 16.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (17, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (17, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (17, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (17, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (7, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (7, 1331) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (17, 1331) --> (7, 1331) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (17, 1331) --> (7, 1331) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 16.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 16.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (17, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (17, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (17, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (17, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (7, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (7, 1331) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (17, 1331) --> (7, 1331) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (17, 1331) --> (7, 1331) INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 53.155476534 -29.077396245 53.193458520 -29.077396245 53.193458520 -29.012715021 53.155476534 -29.012715021 INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 53.155476534 -29.077396245 53.193458520 -29.077396245 53.193458520 -29.012715021 53.155476534 -29.012715021 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (17, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (17, 1433) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 1433) --> (17, 1433) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 1433) --> (17, 1433) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1433) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (27, 1433) --> (17, 1433) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (27, 1433) --> (17, 1433) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1433) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (27, 1433) --> (17, 1433) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (27, 1433) --> (17, 1433) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1433) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (27, 1433) --> (17, 1433) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (27, 1433) --> (17, 1433) INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 53.137315522 -29.092869831 53.178361096 -29.092869831 53.178361096 -29.023152836 53.137315522 -29.023152836 INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 53.137315522 -29.092869831 53.178361096 -29.092869831 53.178361096 -29.023152836 53.137315522 -29.023152836 INFO stpipe.Spec2Pipeline.resample_spec:step.py:1016 Saved model in jw00626030001_02103_00001_nrs1_s2d.fits INFO stpipe.Spec2Pipeline.resample_spec:step.py:546 Step resample_spec done INFO stpipe.Spec2Pipeline.extract_1d:step.py:430 Step extract_1d running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_s2d.fits>,). INFO stpipe.Spec2Pipeline.extract_1d:step.py:434 Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None} DEBUG stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:159 Input is a MultiSlitModel INFO stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:389 Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json INFO stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:397 Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2780 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2780 Turning on source position correction for exp_type = NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2805 Input is a MultiSlitModel. DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2805 Input is a MultiSlitModel. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit 20 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit 20 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = True DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = True WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1449 WCS implies the target is at 852312.72, which is outside the bounding box, WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1449 WCS implies the target is at 852312.72, which is outside the bounding box, WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1450 so we can't get spectrum location using the WCS WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1450 so we can't get spectrum location using the WCS DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1301 Spectrum location from WCS used column/row 113 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1301 Spectrum location from WCS used column/row 113 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=226, ystart=4.5, ystop=11.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=226, ystart=4.5, ystop=11.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3770 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3770 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit 21 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit 21 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=270, ystart=4.5, ystop=11.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=270, ystart=4.5, ystop=11.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit 1 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1138, ystart=4.5, ystop=11.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1138, ystart=4.5, ystop=11.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit 2 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit 2 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = True DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = True WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1449 WCS implies the target is at 852125.97, which is outside the bounding box, WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1449 WCS implies the target is at 852125.97, which is outside the bounding box, WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1450 so we can't get spectrum location using the WCS WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1450 so we can't get spectrum location using the WCS DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1301 Spectrum location from WCS used column/row 668 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1301 Spectrum location from WCS used column/row 668 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1337, ystart=4.5, ystop=11.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1337, ystart=4.5, ystop=11.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3770 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3770 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit 8 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:756 extract_width was truncated from 8 to 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:756 extract_width was truncated from 8 to 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[-1.0], [7.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[-1.0], [7.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1330, ystart=-0.5, ystop=6.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1330, ystart=-0.5, ystop=6.5 WARNING stpipe.Spec2Pipeline.extract_1d:extract1d.py:188 Source extraction limit extends below -0.5 WARNING stpipe.Spec2Pipeline.extract_1d:extract1d.py:188 Source extraction limit extends below -0.5 WARNING stpipe.Spec2Pipeline.extract_1d:extract1d.py:193 Source extraction limit extends above 6.5 WARNING stpipe.Spec2Pipeline.extract_1d:extract1d.py:193 Source extraction limit extends above 6.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit 10 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit 10 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = True DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = True WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1449 WCS implies the target is at 884989.53, which is outside the bounding box, WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1449 WCS implies the target is at 884989.53, which is outside the bounding box, WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1450 so we can't get spectrum location using the WCS WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1450 so we can't get spectrum location using the WCS DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1301 Spectrum location from WCS used column/row 716 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1301 Spectrum location from WCS used column/row 716 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1432, ystart=4.5, ystop=11.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1432, ystart=4.5, ystop=11.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3770 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3770 Applying Aperture correction. DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2952 Not copying from the INT_TIMES table because this is not a TSO exposure. DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2952 Not copying from the INT_TIMES table because this is not a TSO exposure. INFO stpipe.Spec2Pipeline.extract_1d:step.py:1016 Saved model in jw00626030001_02103_00001_nrs1_x1d.fits INFO stpipe.Spec2Pipeline.extract_1d:step.py:546 Step extract_1d done INFO stpipe.Spec2Pipeline:calwebb_spec2.py:314 Finished processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/jw00626030001_02103_00001_nrs1 INFO stpipe.Spec2Pipeline:calwebb_spec2.py:138 Ending calwebb_spec2 INFO stpipe.Spec2Pipeline:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Spec2Pipeline:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Spec2Pipeline:step.py:1016 Saved model in jw00626030001_02103_00001_nrs1_cal.fits INFO stpipe.Spec2Pipeline:step.py:546 Step Spec2Pipeline done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg_user[s2d] | 0.39 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg_user[x1d] | 0.27 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_fs_mbkg_user | 11.72 | |
|
------------------------------Captured stderr call------------------------------ 2022-10-06 04:51:45,637 - stpipe.MasterBackgroundStep - INFO - MasterBackgroundStep instance created. 2022-10-06 04:51:46,293 - stpipe.MasterBackgroundStep - INFO - Step MasterBackgroundStep running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_mbkg_user0/nrs_sci+bkg_cal.fits',). 2022-10-06 04:51:46,295 - stpipe.MasterBackgroundStep - INFO - Step MasterBackgroundStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'master_background', 'search_output_file': True, 'input_dir': '', 'user_background': 'v2_nrs_bkg_user_clean_x1d.fits', 'save_background': False, 'force_subtract': False} 2022-10-06 04:51:49,169 - stpipe.MasterBackgroundStep - INFO - Expanding background for slit S200A1 2022-10-06 04:51:49,171 - stpipe.MasterBackgroundStep - INFO - Applying point source updates to FS background 2022-10-06 04:51:49,231 - stpipe.MasterBackgroundStep - INFO - Expanding background for slit S200A2 2022-10-06 04:51:49,249 - stpipe.MasterBackgroundStep - INFO - Applying point source updates to FS background 2022-10-06 04:51:49,303 - stpipe.MasterBackgroundStep - INFO - Expanding background for slit S400A1 2022-10-06 04:51:49,305 - stpipe.MasterBackgroundStep - INFO - Applying point source updates to FS background 2022-10-06 04:51:49,361 - stpipe.MasterBackgroundStep - INFO - Expanding background for slit S1600A1 2022-10-06 04:51:49,362 - stpipe.MasterBackgroundStep - INFO - Applying point source updates to FS background 2022-10-06 04:51:53,087 - stpipe.MasterBackgroundStep - INFO - Saved model in nrs_sci+bkg_master_background.fits 2022-10-06 04:51:53,088 - stpipe.MasterBackgroundStep - INFO - Step MasterBackgroundStep done -------------------------------Captured log call-------------------------------- INFO stpipe.MasterBackgroundStep:step.py:366 MasterBackgroundStep instance created. INFO stpipe.MasterBackgroundStep:step.py:430 Step MasterBackgroundStep running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_mbkg_user0/nrs_sci+bkg_cal.fits',). INFO stpipe.MasterBackgroundStep:step.py:434 Step MasterBackgroundStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'master_background', 'search_output_file': True, 'input_dir': '', 'user_background': 'v2_nrs_bkg_user_clean_x1d.fits', 'save_background': False, 'force_subtract': False} INFO stpipe.MasterBackgroundStep:expand_to_2d.py:160 Expanding background for slit S200A1 INFO stpipe.MasterBackgroundStep:expand_to_2d.py:160 Expanding background for slit S200A1 INFO stpipe.MasterBackgroundStep:nirspec_utils.py:187 Applying point source updates to FS background INFO stpipe.MasterBackgroundStep:nirspec_utils.py:187 Applying point source updates to FS background INFO stpipe.MasterBackgroundStep:expand_to_2d.py:160 Expanding background for slit S200A2 INFO stpipe.MasterBackgroundStep:expand_to_2d.py:160 Expanding background for slit S200A2 INFO stpipe.MasterBackgroundStep:nirspec_utils.py:187 Applying point source updates to FS background INFO stpipe.MasterBackgroundStep:nirspec_utils.py:187 Applying point source updates to FS background INFO stpipe.MasterBackgroundStep:expand_to_2d.py:160 Expanding background for slit S400A1 INFO stpipe.MasterBackgroundStep:expand_to_2d.py:160 Expanding background for slit S400A1 INFO stpipe.MasterBackgroundStep:nirspec_utils.py:187 Applying point source updates to FS background INFO stpipe.MasterBackgroundStep:nirspec_utils.py:187 Applying point source updates to FS background INFO stpipe.MasterBackgroundStep:expand_to_2d.py:160 Expanding background for slit S1600A1 INFO stpipe.MasterBackgroundStep:expand_to_2d.py:160 Expanding background for slit S1600A1 INFO stpipe.MasterBackgroundStep:nirspec_utils.py:187 Applying point source updates to FS background INFO stpipe.MasterBackgroundStep:nirspec_utils.py:187 Applying point source updates to FS background INFO stpipe.MasterBackgroundStep:step.py:1016 Saved model in nrs_sci+bkg_master_background.fits INFO stpipe.MasterBackgroundStep:step.py:546 Step MasterBackgroundStep done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_ifu_mbkg_user | 157.89 | |
|
------------------------------Captured stderr call------------------------------ 2022-10-06 04:52:00,755 - stpipe.MasterBackgroundStep - INFO - MasterBackgroundStep instance created. 2022-10-06 04:52:01,166 - stpipe.MasterBackgroundStep - INFO - Step MasterBackgroundStep running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_user0/prism_sci_bkg_cal.fits',). 2022-10-06 04:52:01,167 - stpipe.MasterBackgroundStep - INFO - Step MasterBackgroundStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'master_background', 'search_output_file': True, 'input_dir': '', 'user_background': 'prism_bkg_x1d.fits', 'save_background': False, 'force_subtract': False} 2022-10-06 04:54:12,277 - stpipe.MasterBackgroundStep - INFO - Applying point source pathloss updates to IFU background 2022-10-06 04:54:12,278 - stpipe.MasterBackgroundStep - WARNING - Pathloss_point array not found in input 2022-10-06 04:54:12,278 - stpipe.MasterBackgroundStep - WARNING - Skipping pathloss background updates 2022-10-06 04:54:28,994 - stpipe.MasterBackgroundStep - INFO - Saved model in prism_sci_bkg_master_background.fits 2022-10-06 04:54:28,994 - stpipe.MasterBackgroundStep - INFO - Step MasterBackgroundStep done -------------------------------Captured log call-------------------------------- INFO stpipe.MasterBackgroundStep:step.py:366 MasterBackgroundStep instance created. INFO stpipe.MasterBackgroundStep:step.py:430 Step MasterBackgroundStep running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_user0/prism_sci_bkg_cal.fits',). INFO stpipe.MasterBackgroundStep:step.py:434 Step MasterBackgroundStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'master_background', 'search_output_file': True, 'input_dir': '', 'user_background': 'prism_bkg_x1d.fits', 'save_background': False, 'force_subtract': False} INFO stpipe.MasterBackgroundStep:nirspec_utils.py:146 Applying point source pathloss updates to IFU background INFO stpipe.MasterBackgroundStep:nirspec_utils.py:146 Applying point source pathloss updates to IFU background WARNING stpipe.MasterBackgroundStep:nirspec_utils.py:152 Pathloss_point array not found in input WARNING stpipe.MasterBackgroundStep:nirspec_utils.py:152 Pathloss_point array not found in input WARNING stpipe.MasterBackgroundStep:nirspec_utils.py:153 Skipping pathloss background updates WARNING stpipe.MasterBackgroundStep:nirspec_utils.py:153 Skipping pathloss background updates INFO stpipe.MasterBackgroundStep:step.py:1016 Saved model in prism_sci_bkg_master_background.fits INFO stpipe.MasterBackgroundStep:step.py:546 Step MasterBackgroundStep done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec2.py::test_nirspec_mos_spec2[assign_wcs] | 91.47 | |
|
-----------------------------Captured stderr setup------------------------------ 2022-10-06 05:03:05,274 - stpipe.Spec2Pipeline - INFO - Spec2Pipeline instance created. 2022-10-06 05:03:05,275 - stpipe.Spec2Pipeline.bkg_subtract - INFO - BackgroundStep instance created. 2022-10-06 05:03:05,276 - stpipe.Spec2Pipeline.assign_wcs - INFO - AssignWcsStep instance created. 2022-10-06 05:03:05,277 - stpipe.Spec2Pipeline.imprint_subtract - INFO - ImprintStep instance created. 2022-10-06 05:03:05,277 - stpipe.Spec2Pipeline.msa_flagging - INFO - MSAFlagOpenStep instance created. 2022-10-06 05:03:05,278 - stpipe.Spec2Pipeline.extract_2d - INFO - Extract2dStep instance created. 2022-10-06 05:03:05,281 - stpipe.Spec2Pipeline.master_background_mos - INFO - MasterBackgroundMosStep instance created. 2022-10-06 05:03:05,282 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - FlatFieldStep instance created. 2022-10-06 05:03:05,282 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - PathLossStep instance created. 2022-10-06 05:03:05,283 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - BarShadowStep instance created. 2022-10-06 05:03:05,284 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - PhotomStep instance created. 2022-10-06 05:03:05,285 - stpipe.Spec2Pipeline.wavecorr - INFO - WavecorrStep instance created. 2022-10-06 05:03:05,285 - stpipe.Spec2Pipeline.flat_field - INFO - FlatFieldStep instance created. 2022-10-06 05:03:05,286 - stpipe.Spec2Pipeline.srctype - INFO - SourceTypeStep instance created. 2022-10-06 05:03:05,287 - stpipe.Spec2Pipeline.straylight - INFO - StraylightStep instance created. 2022-10-06 05:03:05,287 - stpipe.Spec2Pipeline.fringe - INFO - FringeStep instance created. 2022-10-06 05:03:05,288 - stpipe.Spec2Pipeline.pathloss - INFO - PathLossStep instance created. 2022-10-06 05:03:05,289 - stpipe.Spec2Pipeline.barshadow - INFO - BarShadowStep instance created. 2022-10-06 05:03:05,290 - stpipe.Spec2Pipeline.wfss_contam - INFO - WfssContamStep instance created. 2022-10-06 05:03:05,291 - stpipe.Spec2Pipeline.photom - INFO - PhotomStep instance created. 2022-10-06 05:03:05,292 - stpipe.Spec2Pipeline.resample_spec - INFO - ResampleSpecStep instance created. 2022-10-06 05:03:05,293 - stpipe.Spec2Pipeline.cube_build - INFO - CubeBuildStep instance created. 2022-10-06 05:03:05,294 - stpipe.Spec2Pipeline.extract_1d - INFO - Extract1dStep instance created. 2022-10-06 05:03:06,804 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits',). 2022-10-06 05:03:06,818 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'save_bsub': False, 'fail_on_exception': True, 'save_wfss_esec': False, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000}, 'master_background_mos': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'source_type': None}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0'}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'wfss_contam': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'save_simulated_image': False, 'save_contam_images': False, 'maximum_cores': 'none'}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'drizzle', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None}}} 2022-10-06 05:03:06,861 - stpipe.Spec2Pipeline - INFO - Prefetching reference files for dataset: 'f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits' reftypes = ['apcorr', 'area', 'barshadow', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'mrsxartcorr', 'msa', 'msaoper', 'ote', 'pathloss', 'photom', 'regions', 'sflat', 'speckernel', 'specprofile', 'spectrace', 'specwcs', 'wavecorr', 'wavelengthrange', 'wavemap', 'wfssbkg'] 2022-10-06 05:03:06,886 - stpipe.Spec2Pipeline - INFO - Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits'. 2022-10-06 05:03:06,887 - stpipe.Spec2Pipeline - INFO - Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits'. 2022-10-06 05:03:06,888 - stpipe.Spec2Pipeline - INFO - Prefetch for BARSHADOW reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits'. 2022-10-06 05:03:06,889 - stpipe.Spec2Pipeline - INFO - Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. 2022-10-06 05:03:06,889 - stpipe.Spec2Pipeline - INFO - Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. 2022-10-06 05:03:06,890 - stpipe.Spec2Pipeline - INFO - Prefetch for CUBEPAR reference file is 'N/A'. 2022-10-06 05:03:06,891 - stpipe.Spec2Pipeline - INFO - Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits'. 2022-10-06 05:03:06,891 - stpipe.Spec2Pipeline - INFO - Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf'. 2022-10-06 05:03:06,892 - stpipe.Spec2Pipeline - INFO - Prefetch for DISTORTION reference file is 'N/A'. 2022-10-06 05:03:06,892 - stpipe.Spec2Pipeline - INFO - Prefetch for DRIZPARS reference file is 'N/A'. 2022-10-06 05:03:06,892 - stpipe.Spec2Pipeline - INFO - Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json'. 2022-10-06 05:03:06,893 - stpipe.Spec2Pipeline - INFO - Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits'. 2022-10-06 05:03:06,894 - stpipe.Spec2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is 'N/A'. 2022-10-06 05:03:06,894 - stpipe.Spec2Pipeline - INFO - Prefetch for FLAT reference file is 'N/A'. 2022-10-06 05:03:06,895 - stpipe.Spec2Pipeline - INFO - Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf'. 2022-10-06 05:03:06,896 - stpipe.Spec2Pipeline - INFO - Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. 2022-10-06 05:03:06,897 - stpipe.Spec2Pipeline - INFO - Prefetch for FRINGE reference file is 'N/A'. 2022-10-06 05:03:06,897 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'. 2022-10-06 05:03:06,897 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'. 2022-10-06 05:03:06,897 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'. 2022-10-06 05:03:06,897 - stpipe.Spec2Pipeline - INFO - Prefetch for MRSXARTCORR reference file is 'N/A'. 2022-10-06 05:03:06,897 - stpipe.Spec2Pipeline - INFO - Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. 2022-10-06 05:03:06,898 - stpipe.Spec2Pipeline - INFO - Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. 2022-10-06 05:03:06,899 - stpipe.Spec2Pipeline - INFO - Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. 2022-10-06 05:03:06,900 - stpipe.Spec2Pipeline - INFO - Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits'. 2022-10-06 05:03:06,901 - stpipe.Spec2Pipeline - INFO - Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits'. 2022-10-06 05:03:06,901 - stpipe.Spec2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'. 2022-10-06 05:03:06,901 - stpipe.Spec2Pipeline - INFO - Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits'. 2022-10-06 05:03:06,902 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECKERNEL reference file is 'N/A'. 2022-10-06 05:03:06,902 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECPROFILE reference file is 'N/A'. 2022-10-06 05:03:06,903 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECTRACE reference file is 'N/A'. 2022-10-06 05:03:06,903 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'. 2022-10-06 05:03:06,903 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0004.asdf'. 2022-10-06 05:03:06,903 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf'. 2022-10-06 05:03:06,904 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVEMAP reference file is 'N/A'. 2022-10-06 05:03:06,904 - stpipe.Spec2Pipeline - INFO - Prefetch for WFSSBKG reference file is 'N/A'. 2022-10-06 05:03:06,905 - stpipe.Spec2Pipeline - INFO - Starting calwebb_spec2 ... 2022-10-06 05:03:06,905 - stpipe.Spec2Pipeline - INFO - Processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod 2022-10-06 05:03:06,905 - stpipe.Spec2Pipeline - INFO - Working on input /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits ... 2022-10-06 05:03:07,169 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(2048, 2048) from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits>,). 2022-10-06 05:03:07,171 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} 2022-10-06 05:03:07,322 - stpipe.Spec2Pipeline.assign_wcs - INFO - Retrieving open MSA slitlets for msa_metadata_id = 1 and dither_index = 1 2022-10-06 05:03:07,389 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_ytilt is 0 deg 2022-10-06 05:03:07,389 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.3370744 deg 2022-10-06 05:03:07,389 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_y correction: -0.01862314751306485 deg 2022-10-06 05:03:07,390 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_x correction: 0.0 deg 2022-10-06 05:03:07,660 - stpipe.Spec2Pipeline.assign_wcs - INFO - Slits projected on detector NRS1: [1, 2, 3, 4, 10] 2022-10-06 05:03:07,660 - stpipe.Spec2Pipeline.assign_wcs - INFO - Computing WCS for 5 open slitlets 2022-10-06 05:03:07,699 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_ytilt is 0 deg 2022-10-06 05:03:07,699 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.3370744 deg 2022-10-06 05:03:07,699 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_y correction: -0.01862314751306485 deg 2022-10-06 05:03:07,700 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_x correction: 0.0 deg 2022-10-06 05:03:07,716 - stpipe.Spec2Pipeline.assign_wcs - INFO - SPORDER= -1, wrange=[1.66e-06, 3.17e-06] 2022-10-06 05:03:07,871 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 1 2022-10-06 05:03:07,872 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 2 2022-10-06 05:03:07,872 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 4 open slits in quadrant 3 2022-10-06 05:03:07,904 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 1 open slits in quadrant 4 2022-10-06 05:03:07,911 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 5 2022-10-06 05:03:08,062 - stpipe.Spec2Pipeline.assign_wcs - INFO - Created a NIRSPEC nrs_msaspec pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None, 'msametafile': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/jw95065006001_0_short_msa.fits'} 2022-10-06 05:03:08,391 - stpipe.Spec2Pipeline.assign_wcs - INFO - COMPLETED assign_wcs 2022-10-06 05:03:09,268 - stpipe.Spec2Pipeline.assign_wcs - INFO - Saved model in f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_assign_wcs.fits 2022-10-06 05:03:09,268 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs done 2022-10-06 05:03:09,526 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract running with args (<ImageModel(2048, 2048) from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_assign_wcs.fits>, []). 2022-10-06 05:03:09,527 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None} 2022-10-06 05:03:09,528 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step skipped. 2022-10-06 05:03:09,530 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract done 2022-10-06 05:03:09,779 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract running with args (<ImageModel(2048, 2048) from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_assign_wcs.fits>, []). 2022-10-06 05:03:09,780 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0'} 2022-10-06 05:03:09,780 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step skipped. 2022-10-06 05:03:09,783 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract done 2022-10-06 05:03:10,015 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging running with args (<ImageModel(2048, 2048) from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_assign_wcs.fits>,). 2022-10-06 05:03:10,016 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0'} 2022-10-06 05:03:10,033 - stpipe.Spec2Pipeline.msa_flagging - INFO - Using reference file /grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json 2022-10-06 05:03:10,034 - stpipe.JwstStep - INFO - JwstStep instance created. 2022-10-06 05:03:10,184 - stpipe.Spec2Pipeline.msa_flagging - INFO - gwa_ytilt is 0 deg 2022-10-06 05:03:10,184 - stpipe.Spec2Pipeline.msa_flagging - INFO - gwa_xtilt is 0.3370744 deg 2022-10-06 05:03:10,184 - stpipe.Spec2Pipeline.msa_flagging - INFO - theta_y correction: -0.01862314751306485 deg 2022-10-06 05:03:10,185 - stpipe.Spec2Pipeline.msa_flagging - INFO - theta_x correction: 0.0 deg 2022-10-06 05:03:10,201 - stpipe.Spec2Pipeline.msa_flagging - INFO - SPORDER= -1, wrange=[1.66e-06, 3.17e-06] 2022-10-06 05:03:10,354 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 5 open slits in quadrant 1 2022-10-06 05:03:10,397 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 3 open slits in quadrant 2 2022-10-06 05:03:10,423 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 9 open slits in quadrant 3 2022-10-06 05:03:10,494 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 3 open slits in quadrant 4 2022-10-06 05:03:10,518 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 0 open slits in quadrant 5 2022-10-06 05:03:24,529 - stpipe.Spec2Pipeline.msa_flagging - INFO - Saved model in f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_msa_flagging.fits 2022-10-06 05:03:24,529 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging done 2022-10-06 05:03:24,785 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d running with args (<ImageModel(2048, 2048) from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_msa_flagging.fits>,). 2022-10-06 05:03:24,786 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000} 2022-10-06 05:03:24,805 - stpipe.Spec2Pipeline.extract_2d - INFO - EXP_TYPE is NRS_MSASPEC 2022-10-06 05:03:25,001 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 1 2022-10-06 05:03:25,001 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 896 2048 2022-10-06 05:03:25,001 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1846 1872 2022-10-06 05:03:25,212 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2022-10-06 05:03:25,221 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.171673590 -27.767303828 53.171170658 -27.767251593 53.171163952 -27.767305440 53.171666885 -27.767357681 2022-10-06 05:03:25,222 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.171673590 -27.767303828 53.171170658 -27.767251593 53.171163952 -27.767305440 53.171666885 -27.767357681 2022-10-06 05:03:25,403 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 2 2022-10-06 05:03:25,404 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 697 2048 2022-10-06 05:03:25,404 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1615 1643 2022-10-06 05:03:25,620 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2022-10-06 05:03:25,628 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.163311924 -27.771928396 53.162811061 -27.771875742 53.162804425 -27.771929534 53.163305287 -27.771982194 2022-10-06 05:03:25,629 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.163311924 -27.771928396 53.162811061 -27.771875742 53.162804425 -27.771929534 53.163305287 -27.771982194 2022-10-06 05:03:25,807 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 3 2022-10-06 05:03:25,807 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 670 2048 2022-10-06 05:03:25,807 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1475 1503 2022-10-06 05:03:26,020 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2022-10-06 05:03:26,028 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.158573864 -27.772032040 53.158074255 -27.771979468 53.158067625 -27.772033209 53.158567233 -27.772085787 2022-10-06 05:03:26,029 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.158573864 -27.772032040 53.158074255 -27.771979468 53.158067625 -27.772033209 53.158567233 -27.772085787 2022-10-06 05:03:26,528 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 4 2022-10-06 05:03:26,528 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 874 2048 2022-10-06 05:03:26,528 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1656 1682 2022-10-06 05:03:26,738 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2022-10-06 05:03:26,746 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.165273205 -27.767015323 53.164771977 -27.766963223 53.164765279 -27.767016991 53.165266506 -27.767069097 2022-10-06 05:03:26,747 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.165273205 -27.767015323 53.164771977 -27.766963223 53.164765279 -27.767016991 53.165266506 -27.767069097 2022-10-06 05:03:26,927 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 10 2022-10-06 05:03:26,927 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 591 2024 2022-10-06 05:03:26,927 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 708 735 2022-10-06 05:03:27,139 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2022-10-06 05:03:27,147 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.133157735 -27.770707668 53.132664763 -27.770655867 53.132658121 -27.770709326 53.133151094 -27.770761133 2022-10-06 05:03:27,148 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.133157735 -27.770707668 53.132664763 -27.770655867 53.132658121 -27.770709326 53.133151094 -27.770761133 2022-10-06 05:03:28,970 - stpipe.Spec2Pipeline.extract_2d - INFO - Saved model in f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_extract_2d.fits 2022-10-06 05:03:28,970 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d done 2022-10-06 05:03:29,270 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype running with args (<MultiSlitModel from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_extract_2d.fits>,). 2022-10-06 05:03:29,271 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'source_type': None} 2022-10-06 05:03:29,279 - stpipe.Spec2Pipeline.srctype - INFO - Input EXP_TYPE is NRS_MSASPEC 2022-10-06 05:03:29,280 - stpipe.Spec2Pipeline.srctype - INFO - source_id=227, stellarity=1.0000, type=POINT 2022-10-06 05:03:29,281 - stpipe.Spec2Pipeline.srctype - INFO - source_id=279, stellarity=0.1000, type=EXTENDED 2022-10-06 05:03:29,282 - stpipe.Spec2Pipeline.srctype - INFO - source_id=443, stellarity=1.0000, type=POINT 2022-10-06 05:03:29,282 - stpipe.Spec2Pipeline.srctype - INFO - source_id=482, stellarity=0.0000, type=EXTENDED 2022-10-06 05:03:29,283 - stpipe.Spec2Pipeline.srctype - INFO - source_id=2315, stellarity=0.2000, type=EXTENDED 2022-10-06 05:03:30,566 - stpipe.Spec2Pipeline.srctype - INFO - Saved model in f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_srctype.fits 2022-10-06 05:03:30,566 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype done 2022-10-06 05:03:30,879 - stpipe.Spec2Pipeline.master_background_mos - INFO - Step master_background_mos running with args (<MultiSlitModel from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_srctype.fits>,). 2022-10-06 05:03:30,882 - stpipe.Spec2Pipeline.master_background_mos - INFO - Step master_background_mos parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None}}} 2022-10-06 05:03:30,890 - stpipe.Spec2Pipeline.master_background_mos - WARNING - No background slits available for creating master background. Skipping 2022-10-06 05:03:30,890 - stpipe.Spec2Pipeline.master_background_mos - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 05:03:30,890 - stpipe.Spec2Pipeline.master_background_mos - INFO - Step master_background_mos done 2022-10-06 05:03:31,200 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr running with args (<MultiSlitModel from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_srctype.fits>,). 2022-10-06 05:03:31,201 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0'} 2022-10-06 05:03:31,227 - stpipe.Spec2Pipeline.wavecorr - INFO - Using WAVECORR reference file /grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0004.asdf 2022-10-06 05:03:32,098 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a POINT source type in slit 1 2022-10-06 05:03:32,098 - stpipe.Spec2Pipeline.wavecorr - INFO - slit name 1 2022-10-06 05:03:32,197 - stpipe.Spec2Pipeline.wavecorr - INFO - Using wavelength zero-point correction for aperture MOS 2022-10-06 05:03:32,202 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 2 2022-10-06 05:03:32,202 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a POINT source type in slit 3 2022-10-06 05:03:32,203 - stpipe.Spec2Pipeline.wavecorr - INFO - slit name 3 2022-10-06 05:03:32,309 - stpipe.Spec2Pipeline.wavecorr - INFO - Using wavelength zero-point correction for aperture MOS 2022-10-06 05:03:32,315 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 4 2022-10-06 05:03:32,315 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 10 2022-10-06 05:03:33,846 - stpipe.Spec2Pipeline.wavecorr - INFO - Saved model in f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_wavecorr.fits 2022-10-06 05:03:33,847 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr done 2022-10-06 05:03:34,189 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field running with args (<MultiSlitModel from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_wavecorr.fits>,). 2022-10-06 05:03:34,191 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2022-10-06 05:03:45,603 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 1 2022-10-06 05:03:49,923 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 2 2022-10-06 05:03:54,977 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 3 2022-10-06 05:04:00,112 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 4 2022-10-06 05:04:04,874 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 10 2022-10-06 05:04:12,240 - stpipe.Spec2Pipeline.flat_field - INFO - Saved model in f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_flat_field.fits 2022-10-06 05:04:12,240 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field done 2022-10-06 05:04:12,596 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss running with args (<MultiSlitModel from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_flat_field.fits>,). 2022-10-06 05:04:12,597 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None} 2022-10-06 05:04:12,629 - stpipe.Spec2Pipeline.pathloss - INFO - Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits 2022-10-06 05:04:12,697 - stpipe.Spec2Pipeline.pathloss - INFO - Input exposure type is NRS_MSASPEC 2022-10-06 05:04:13,598 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 0 2022-10-06 05:04:13,598 - stpipe.Spec2Pipeline.pathloss - WARNING - Source is outside slit. 2022-10-06 05:04:13,598 - stpipe.Spec2Pipeline.pathloss - WARNING - No correction provided for slit 0. Skipping 2022-10-06 05:04:13,598 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 1 2022-10-06 05:04:13,621 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 2 2022-10-06 05:04:13,645 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 3 2022-10-06 05:04:13,667 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 4 2022-10-06 05:04:15,376 - stpipe.Spec2Pipeline.pathloss - INFO - Saved model in f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_pathloss.fits 2022-10-06 05:04:15,376 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss done 2022-10-06 05:04:15,721 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow running with args (<MultiSlitModel from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_pathloss.fits>,). 2022-10-06 05:04:15,722 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None} 2022-10-06 05:04:15,750 - stpipe.Spec2Pipeline.barshadow - INFO - Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits 2022-10-06 05:04:16,668 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 1 2022-10-06 05:04:16,679 - stpipe.Spec2Pipeline.barshadow - INFO - Bar shadow correction skipped for slitlet 1 (source not uniform) 2022-10-06 05:04:16,686 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 2 2022-10-06 05:04:16,828 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 3 2022-10-06 05:04:16,839 - stpipe.Spec2Pipeline.barshadow - INFO - Bar shadow correction skipped for slitlet 3 (source not uniform) 2022-10-06 05:04:16,846 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 4 2022-10-06 05:04:16,970 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 10 2022-10-06 05:04:18,839 - stpipe.Spec2Pipeline.barshadow - INFO - Saved model in f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_barshadow.fits 2022-10-06 05:04:18,840 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow done 2022-10-06 05:04:19,252 - stpipe.Spec2Pipeline.photom - INFO - Step photom running with args (<MultiSlitModel from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_barshadow.fits>,). 2022-10-06 05:04:19,253 - stpipe.Spec2Pipeline.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None} 2022-10-06 05:04:19,298 - stpipe.Spec2Pipeline.photom - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits 2022-10-06 05:04:19,298 - stpipe.Spec2Pipeline.photom - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits 2022-10-06 05:04:20,213 - stpipe.Spec2Pipeline.photom - INFO - Using instrument: NIRSPEC 2022-10-06 05:04:20,214 - stpipe.Spec2Pipeline.photom - INFO - detector: NRS1 2022-10-06 05:04:20,214 - stpipe.Spec2Pipeline.photom - INFO - exp_type: NRS_MSASPEC 2022-10-06 05:04:20,214 - stpipe.Spec2Pipeline.photom - INFO - filter: F170LP 2022-10-06 05:04:20,214 - stpipe.Spec2Pipeline.photom - INFO - grating: G235M 2022-10-06 05:04:20,310 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 1 2022-10-06 05:04:20,310 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 1 2022-10-06 05:04:20,320 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 2 2022-10-06 05:04:20,320 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 05:04:20,331 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 3 2022-10-06 05:04:20,331 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 1 2022-10-06 05:04:20,341 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 4 2022-10-06 05:04:20,342 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 05:04:20,351 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 10 2022-10-06 05:04:20,352 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 4.25452e+10 2022-10-06 05:04:20,366 - stpipe.Spec2Pipeline.photom - INFO - Step photom done 2022-10-06 05:04:20,776 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec running with args (<MultiSlitModel from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_cal.fits>,). 2022-10-06 05:04:20,778 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True} 2022-10-06 05:04:20,811 - stpipe.Spec2Pipeline.resample_spec - INFO - No DRIZPARS reffile 2022-10-06 05:04:20,812 - stpipe.Spec2Pipeline.resample_spec - INFO - using: pixfrac=1.0 2022-10-06 05:04:20,812 - stpipe.Spec2Pipeline.resample_spec - INFO - using: kernel='square' 2022-10-06 05:04:20,812 - stpipe.Spec2Pipeline.resample_spec - INFO - using: fillval='INDEF' 2022-10-06 05:04:20,812 - stpipe.Spec2Pipeline.resample_spec - INFO - using: wht_type='ivm' 2022-10-06 05:04:20,812 - stpipe.Spec2Pipeline.resample_spec - INFO - using: pscale_ratio=1.0 2022-10-06 05:04:20,812 - stpipe.Spec2Pipeline.resample_spec - INFO - Reorganizing data from exposure f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_cal.fits 2022-10-06 05:04:21,782 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter kernal: square 2022-10-06 05:04:21,783 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter pixfrac: 1.0 2022-10-06 05:04:21,783 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter fillval: INDEF 2022-10-06 05:04:21,783 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter weight_type: ivm 2022-10-06 05:04:21,951 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2022-10-06 05:04:22,010 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (26, 1152) --> (17, 1152) 2022-10-06 05:04:22,014 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2022-10-06 05:04:22,070 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (26, 1152) --> (17, 1152) 2022-10-06 05:04:22,076 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2022-10-06 05:04:22,133 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (26, 1152) --> (17, 1152) 2022-10-06 05:04:22,139 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2022-10-06 05:04:22,195 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (26, 1152) --> (17, 1152) 2022-10-06 05:04:22,229 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.163795694 -27.829795676 53.171654436 -27.829795676 53.171654436 -27.767276801 53.163795694 -27.767276801 2022-10-06 05:04:22,543 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter kernal: square 2022-10-06 05:04:22,543 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter pixfrac: 1.0 2022-10-06 05:04:22,543 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter fillval: INDEF 2022-10-06 05:04:22,543 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter weight_type: ivm 2022-10-06 05:04:23,092 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2022-10-06 05:04:23,162 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (28, 1351) --> (17, 1351) 2022-10-06 05:04:23,166 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2022-10-06 05:04:23,234 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (28, 1351) --> (17, 1351) 2022-10-06 05:04:23,240 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2022-10-06 05:04:23,306 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (28, 1351) --> (17, 1351) 2022-10-06 05:04:23,312 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2022-10-06 05:04:23,390 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (28, 1351) --> (17, 1351) 2022-10-06 05:04:23,433 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.154246024 -27.845384283 53.163292572 -27.845384283 53.163292572 -27.771900909 53.154246024 -27.771900909 2022-10-06 05:04:23,753 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter kernal: square 2022-10-06 05:04:23,753 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter pixfrac: 1.0 2022-10-06 05:04:23,753 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter fillval: INDEF 2022-10-06 05:04:23,754 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter weight_type: ivm 2022-10-06 05:04:23,926 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2022-10-06 05:04:23,995 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (28, 1378) --> (17, 1378) 2022-10-06 05:04:23,999 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2022-10-06 05:04:24,068 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (28, 1378) --> (17, 1378) 2022-10-06 05:04:24,074 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2022-10-06 05:04:24,142 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (28, 1378) --> (17, 1378) 2022-10-06 05:04:24,148 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2022-10-06 05:04:24,215 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (28, 1378) --> (17, 1378) 2022-10-06 05:04:24,254 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.149334244 -27.846933549 53.158554414 -27.846933549 53.158554414 -27.772004639 53.149334244 -27.772004639 2022-10-06 05:04:24,559 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter kernal: square 2022-10-06 05:04:24,560 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter pixfrac: 1.0 2022-10-06 05:04:24,560 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter fillval: INDEF 2022-10-06 05:04:24,560 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter weight_type: ivm 2022-10-06 05:04:24,726 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2022-10-06 05:04:24,784 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (26, 1174) --> (17, 1174) 2022-10-06 05:04:24,788 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2022-10-06 05:04:24,843 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (26, 1174) --> (17, 1174) 2022-10-06 05:04:24,849 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2022-10-06 05:04:24,904 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (26, 1174) --> (17, 1174) 2022-10-06 05:04:24,909 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2022-10-06 05:04:24,965 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (26, 1174) --> (17, 1174) 2022-10-06 05:04:24,999 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.157257481 -27.830642802 53.165253932 -27.830642802 53.165253932 -27.766988435 53.157257481 -27.766988435 2022-10-06 05:04:25,309 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter kernal: square 2022-10-06 05:04:25,309 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter pixfrac: 1.0 2022-10-06 05:04:25,310 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter fillval: INDEF 2022-10-06 05:04:25,310 - stpipe.Spec2Pipeline.resample_spec - INFO - Driz parameter weight_type: ivm 2022-10-06 05:04:25,478 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2022-10-06 05:04:25,545 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (27, 1433) --> (17, 1433) 2022-10-06 05:04:25,549 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2022-10-06 05:04:25,616 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (27, 1433) --> (17, 1433) 2022-10-06 05:04:25,623 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2022-10-06 05:04:25,697 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (27, 1433) --> (17, 1433) 2022-10-06 05:04:25,705 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2022-10-06 05:04:25,787 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (27, 1433) --> (17, 1433) 2022-10-06 05:04:25,837 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.123454597 -27.848369367 53.133137534 -27.848369367 53.133137534 -27.770681081 53.123454597 -27.770681081 2022-10-06 05:04:27,462 - stpipe.Spec2Pipeline.resample_spec - INFO - Saved model in f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_s2d.fits 2022-10-06 05:04:27,463 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec done 2022-10-06 05:04:27,799 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d running with args (<MultiSlitModel from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_s2d.fits>,). 2022-10-06 05:04:27,801 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None} 2022-10-06 05:04:27,827 - stpipe.Spec2Pipeline.extract_1d - INFO - Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json 2022-10-06 05:04:27,844 - stpipe.Spec2Pipeline.extract_1d - INFO - Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits 2022-10-06 05:04:27,890 - stpipe.Spec2Pipeline.extract_1d - INFO - Turning on source position correction for exp_type = NRS_MSASPEC 2022-10-06 05:04:27,890 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 1 2022-10-06 05:04:27,924 - stpipe.Spec2Pipeline.extract_1d - WARNING - WCS implies the target is at 216.01, which is outside the bounding box, 2022-10-06 05:04:27,924 - stpipe.Spec2Pipeline.extract_1d - WARNING - so we can't get spectrum location using the WCS 2022-10-06 05:04:27,925 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: xstart=0, xstop=1151, ystart=4.5, ystop=11.5 2022-10-06 05:04:28,124 - stpipe.Spec2Pipeline.extract_1d - INFO - Applying Aperture correction. 2022-10-06 05:04:29,924 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 2 2022-10-06 05:04:29,925 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2022-10-06 05:04:29,943 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: xstart=0, xstop=1350, ystart=4.5, ystop=11.5 2022-10-06 05:04:30,172 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 3 2022-10-06 05:04:30,207 - stpipe.Spec2Pipeline.extract_1d - WARNING - WCS implies the target is at 187.13, which is outside the bounding box, 2022-10-06 05:04:30,207 - stpipe.Spec2Pipeline.extract_1d - WARNING - so we can't get spectrum location using the WCS 2022-10-06 05:04:30,208 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: xstart=0, xstop=1377, ystart=4.5, ystop=11.5 2022-10-06 05:04:30,435 - stpipe.Spec2Pipeline.extract_1d - INFO - Applying Aperture correction. 2022-10-06 05:04:32,558 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 4 2022-10-06 05:04:32,559 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2022-10-06 05:04:32,575 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: xstart=0, xstop=1173, ystart=4.5, ystop=11.5 2022-10-06 05:04:32,781 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 10 2022-10-06 05:04:32,781 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2022-10-06 05:04:32,800 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: xstart=0, xstop=1432, ystart=4.5, ystop=11.5 2022-10-06 05:04:33,233 - stpipe.Spec2Pipeline.extract_1d - INFO - Saved model in f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_x1d.fits 2022-10-06 05:04:33,233 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d done 2022-10-06 05:04:33,233 - stpipe.Spec2Pipeline - INFO - Finished processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod 2022-10-06 05:04:33,234 - stpipe.Spec2Pipeline - INFO - Ending calwebb_spec2 2022-10-06 05:04:33,234 - stpipe.Spec2Pipeline - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 05:04:34,505 - stpipe.Spec2Pipeline - INFO - Saved model in f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_cal.fits 2022-10-06 05:04:34,505 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline done -------------------------------Captured log setup------------------------------- INFO stpipe.Spec2Pipeline:step.py:366 Spec2Pipeline instance created. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:366 BackgroundStep instance created. INFO stpipe.Spec2Pipeline.assign_wcs:step.py:366 AssignWcsStep instance created. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:366 ImprintStep instance created. INFO stpipe.Spec2Pipeline.msa_flagging:step.py:366 MSAFlagOpenStep instance created. INFO stpipe.Spec2Pipeline.extract_2d:step.py:366 Extract2dStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos:step.py:366 MasterBackgroundMosStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.flat_field:step.py:366 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.pathloss:step.py:366 PathLossStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.barshadow:step.py:366 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.master_background_mos.photom:step.py:366 PhotomStep instance created. INFO stpipe.Spec2Pipeline.wavecorr:step.py:366 WavecorrStep instance created. INFO stpipe.Spec2Pipeline.flat_field:step.py:366 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.srctype:step.py:366 SourceTypeStep instance created. INFO stpipe.Spec2Pipeline.straylight:step.py:366 StraylightStep instance created. INFO stpipe.Spec2Pipeline.fringe:step.py:366 FringeStep instance created. INFO stpipe.Spec2Pipeline.pathloss:step.py:366 PathLossStep instance created. INFO stpipe.Spec2Pipeline.barshadow:step.py:366 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.wfss_contam:step.py:366 WfssContamStep instance created. INFO stpipe.Spec2Pipeline.photom:step.py:366 PhotomStep instance created. INFO stpipe.Spec2Pipeline.resample_spec:step.py:366 ResampleSpecStep instance created. INFO stpipe.Spec2Pipeline.cube_build:step.py:366 CubeBuildStep instance created. INFO stpipe.Spec2Pipeline.extract_1d:step.py:366 Extract1dStep instance created. INFO stpipe.Spec2Pipeline:step.py:430 Step Spec2Pipeline running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits',). INFO stpipe.Spec2Pipeline:step.py:434 Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'save_bsub': False, 'fail_on_exception': True, 'save_wfss_esec': False, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000}, 'master_background_mos': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'source_type': None}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0'}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'wfss_contam': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'save_simulated_image': False, 'save_contam_images': False, 'maximum_cores': 'none'}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'drizzle', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None}}} INFO stpipe.Spec2Pipeline:pipeline.py:358 Prefetching reference files for dataset: 'f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits' reftypes = ['apcorr', 'area', 'barshadow', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'mrsxartcorr', 'msa', 'msaoper', 'ote', 'pathloss', 'photom', 'regions', 'sflat', 'speckernel', 'specprofile', 'spectrace', 'specwcs', 'wavecorr', 'wavelengthrange', 'wavemap', 'wfssbkg'] INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for BARSHADOW reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for CUBEPAR reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DISTORTION reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for DRIZPARS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FILTEROFFSET reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FLAT reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for FRINGE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for IFUFORE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for IFUPOST reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for IFUSLICER reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for MRSXARTCORR reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for REGIONS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECKERNEL reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECPROFILE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECTRACE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for SPECWCS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WAVEMAP reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:366 Prefetch for WFSSBKG reference file is 'N/A'. INFO stpipe.Spec2Pipeline:calwebb_spec2.py:92 Starting calwebb_spec2 ... INFO stpipe.Spec2Pipeline:calwebb_spec2.py:110 Processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod INFO stpipe.Spec2Pipeline:calwebb_spec2.py:176 Working on input /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits ... DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:347 Science data does not allow direct background subtraction. Skipping "bkg_subtract". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:359 Science data does not allow imprint processing. Skipping "imprint_subtraction". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:370 Science data does not allow stray light correction. Skipping "straylight". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:375 Science data does not allow fringe correction. Skipping "fringe". INFO stpipe.Spec2Pipeline.assign_wcs:step.py:430 Step assign_wcs running with args (<ImageModel(2048, 2048) from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits>,). INFO stpipe.Spec2Pipeline.assign_wcs:step.py:434 Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:80 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:80 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.Spec2Pipeline.assign_wcs:nirspec.py:605 msa_data with msa_metadata_id = 1 [(1, 1, 3, 152, 36, 227, 'N', 'OPEN', -0.4635, 0.6463, 1, 'Y'), (1, 1, 3, 152, 37, 227, 'Y', 'OPEN', nan, nan, 1, 'N'), (1, 1, 3, 152, 38, 227, 'Y', 'OPEN', nan, nan, 1, 'N'), (2, 1, 3, 225, 82, 279, 'N', 'OPEN', 0.195, 1.0469, 1, 'Y'), (2, 1, 3, 225, 83, 279, 'Y', 'OPEN', nan, nan, 1, 'N'), (2, 1, 3, 225, 84, 279, 'Y', 'OPEN', nan, nan, 1, 'N'), (3, 1, 3, 233, 110, 443, 'N', 'OPEN', 0.384, 1.4085, 1, 'Y'), (3, 1, 3, 233, 111, 443, 'Y', 'OPEN', nan, nan, 1, 'N'), (3, 1, 3, 233, 112, 443, 'Y', 'OPEN', nan, nan, 1, 'N'), (4, 1, 3, 157, 74, 482, 'N', 'OPEN', 0.15899998, 1.1515, 1, 'Y'), (4, 1, 3, 157, 75, 482, 'Y', 'OPEN', nan, nan, 1, 'N'), (4, 1, 3, 157, 76, 482, 'Y', 'OPEN', nan, nan, 1, 'N'), (10, 1, 4, 251, 22, 2315, 'N', 'OPEN', 0.14859998, 0.8781, 1, 'Y'), (10, 1, 4, 251, 23, 2315, 'Y', 'OPEN', nan, nan, 1, 'N'), (10, 1, 4, 251, 24, 2315, 'Y', 'OPEN', nan, nan, 1, 'N')] DEBUG stpipe.Spec2Pipeline.assign_wcs:nirspec.py:605 msa_data with msa_metadata_id = 1 [(1, 1, 3, 152, 36, 227, 'N', 'OPEN', -0.4635, 0.6463, 1, 'Y'), (1, 1, 3, 152, 37, 227, 'Y', 'OPEN', nan, nan, 1, 'N'), (1, 1, 3, 152, 38, 227, 'Y', 'OPEN', nan, nan, 1, 'N'), (2, 1, 3, 225, 82, 279, 'N', 'OPEN', 0.195, 1.0469, 1, 'Y'), (2, 1, 3, 225, 83, 279, 'Y', 'OPEN', nan, nan, 1, 'N'), (2, 1, 3, 225, 84, 279, 'Y', 'OPEN', nan, nan, 1, 'N'), (3, 1, 3, 233, 110, 443, 'N', 'OPEN', 0.384, 1.4085, 1, 'Y'), (3, 1, 3, 233, 111, 443, 'Y', 'OPEN', nan, nan, 1, 'N'), (3, 1, 3, 233, 112, 443, 'Y', 'OPEN', nan, nan, 1, 'N'), (4, 1, 3, 157, 74, 482, 'N', 'OPEN', 0.15899998, 1.1515, 1, 'Y'), (4, 1, 3, 157, 75, 482, 'Y', 'OPEN', nan, nan, 1, 'N'), (4, 1, 3, 157, 76, 482, 'Y', 'OPEN', nan, nan, 1, 'N'), (10, 1, 4, 251, 22, 2315, 'N', 'OPEN', 0.14859998, 0.8781, 1, 'Y'), (10, 1, 4, 251, 23, 2315, 'Y', 'OPEN', nan, nan, 1, 'N'), (10, 1, 4, 251, 24, 2315, 'Y', 'OPEN', nan, nan, 1, 'N')] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:606 Retrieving open MSA slitlets for msa_metadata_id = 1 and dither_index = 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:606 Retrieving open MSA slitlets for msa_metadata_id = 1 and dither_index = 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1375 gwa_ytilt is 0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1375 gwa_ytilt is 0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1376 gwa_xtilt is 0.3370744 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1376 gwa_xtilt is 0.3370744 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1380 theta_y correction: -0.01862314751306485 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1380 theta_y correction: -0.01862314751306485 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:424 Slits projected on detector NRS1: [1, 2, 3, 4, 10] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:424 Slits projected on detector NRS1: [1, 2, 3, 4, 10] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:308 Computing WCS for 5 open slitlets INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:308 Computing WCS for 5 open slitlets INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1375 gwa_ytilt is 0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1375 gwa_ytilt is 0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1376 gwa_xtilt is 0.3370744 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1376 gwa_xtilt is 0.3370744 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1380 theta_y correction: -0.01862314751306485 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1380 theta_y correction: -0.01862314751306485 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:330 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:330 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 4 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 4 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 1 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 1 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 5 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1020 There are 0 open slits in quadrant 5 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:62 Created a NIRSPEC nrs_msaspec pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None, 'msametafile': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/jw95065006001_0_short_msa.fits'} INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:62 Created a NIRSPEC nrs_msaspec pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None, 'msametafile': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/jw95065006001_0_short_msa.fits'} INFO stpipe.Spec2Pipeline.assign_wcs:assign_wcs.py:96 COMPLETED assign_wcs INFO stpipe.Spec2Pipeline.assign_wcs:assign_wcs.py:96 COMPLETED assign_wcs INFO stpipe.Spec2Pipeline.assign_wcs:step.py:1016 Saved model in f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_assign_wcs.fits INFO stpipe.Spec2Pipeline.assign_wcs:step.py:546 Step assign_wcs done INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:430 Step bkg_subtract running with args (<ImageModel(2048, 2048) from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_assign_wcs.fits>, []). INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:434 Step bkg_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None} INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:546 Step bkg_subtract done INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:430 Step imprint_subtract running with args (<ImageModel(2048, 2048) from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_assign_wcs.fits>, []). INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:434 Step imprint_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0'} INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:464 Step skipped. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:546 Step imprint_subtract done INFO stpipe.Spec2Pipeline.msa_flagging:step.py:430 Step msa_flagging running with args (<ImageModel(2048, 2048) from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_assign_wcs.fits>,). INFO stpipe.Spec2Pipeline.msa_flagging:step.py:434 Step msa_flagging parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0'} INFO stpipe.Spec2Pipeline.msa_flagging:msaflagopen_step.py:27 Using reference file /grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json INFO stpipe.JwstStep:step.py:366 JwstStep instance created. INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1375 gwa_ytilt is 0 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1375 gwa_ytilt is 0 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1376 gwa_xtilt is 0.3370744 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1376 gwa_xtilt is 0.3370744 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1380 theta_y correction: -0.01862314751306485 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1380 theta_y correction: -0.01862314751306485 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:330 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:330 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1020 There are 5 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1020 There are 5 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1020 There are 3 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1020 There are 3 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1020 There are 9 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1020 There are 9 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1020 There are 3 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1020 There are 3 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1020 There are 0 open slits in quadrant 5 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1020 There are 0 open slits in quadrant 5 INFO stpipe.Spec2Pipeline.msa_flagging:step.py:1016 Saved model in f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_msa_flagging.fits INFO stpipe.Spec2Pipeline.msa_flagging:step.py:546 Step msa_flagging done INFO stpipe.Spec2Pipeline.extract_2d:step.py:430 Step extract_2d running with args (<ImageModel(2048, 2048) from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_msa_flagging.fits>,). INFO stpipe.Spec2Pipeline.extract_2d:step.py:434 Step extract_2d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000} INFO stpipe.Spec2Pipeline.extract_2d:extract_2d.py:61 EXP_TYPE is NRS_MSASPEC INFO stpipe.Spec2Pipeline.extract_2d:extract_2d.py:61 EXP_TYPE is NRS_MSASPEC INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 896 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 896 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1846 1872 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1846 1872 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 53.171673590 -27.767303828 53.171170658 -27.767251593 53.171163952 -27.767305440 53.171666885 -27.767357681 INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 53.171673590 -27.767303828 53.171170658 -27.767251593 53.171163952 -27.767305440 53.171666885 -27.767357681 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.171673590 -27.767303828 53.171170658 -27.767251593 53.171163952 -27.767305440 53.171666885 -27.767357681 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.171673590 -27.767303828 53.171170658 -27.767251593 53.171163952 -27.767305440 53.171666885 -27.767357681 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 2 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 2 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 697 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 697 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1615 1643 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1615 1643 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 53.163311924 -27.771928396 53.162811061 -27.771875742 53.162804425 -27.771929534 53.163305287 -27.771982194 INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 53.163311924 -27.771928396 53.162811061 -27.771875742 53.162804425 -27.771929534 53.163305287 -27.771982194 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.163311924 -27.771928396 53.162811061 -27.771875742 53.162804425 -27.771929534 53.163305287 -27.771982194 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.163311924 -27.771928396 53.162811061 -27.771875742 53.162804425 -27.771929534 53.163305287 -27.771982194 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 3 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 3 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 670 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 670 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1475 1503 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1475 1503 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 53.158573864 -27.772032040 53.158074255 -27.771979468 53.158067625 -27.772033209 53.158567233 -27.772085787 INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 53.158573864 -27.772032040 53.158074255 -27.771979468 53.158067625 -27.772033209 53.158567233 -27.772085787 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.158573864 -27.772032040 53.158074255 -27.771979468 53.158067625 -27.772033209 53.158567233 -27.772085787 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.158573864 -27.772032040 53.158074255 -27.771979468 53.158067625 -27.772033209 53.158567233 -27.772085787 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 4 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 4 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 874 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 874 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1656 1682 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1656 1682 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 53.165273205 -27.767015323 53.164771977 -27.766963223 53.164765279 -27.767016991 53.165266506 -27.767069097 INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 53.165273205 -27.767015323 53.164771977 -27.766963223 53.164765279 -27.767016991 53.165266506 -27.767069097 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.165273205 -27.767015323 53.164771977 -27.766963223 53.164765279 -27.767016991 53.165266506 -27.767069097 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.165273205 -27.767015323 53.164771977 -27.766963223 53.164765279 -27.767016991 53.165266506 -27.767069097 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 10 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 10 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 591 2024 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 591 2024 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 708 735 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 708 735 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 53.133157735 -27.770707668 53.132664763 -27.770655867 53.132658121 -27.770709326 53.133151094 -27.770761133 INFO stpipe.Spec2Pipeline.extract_2d:util.py:1060 Update S_REGION to POLYGON ICRS 53.133157735 -27.770707668 53.132664763 -27.770655867 53.132658121 -27.770709326 53.133151094 -27.770761133 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.133157735 -27.770707668 53.132664763 -27.770655867 53.132658121 -27.770709326 53.133151094 -27.770761133 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.133157735 -27.770707668 53.132664763 -27.770655867 53.132658121 -27.770709326 53.133151094 -27.770761133 INFO stpipe.Spec2Pipeline.extract_2d:step.py:1016 Saved model in f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_extract_2d.fits INFO stpipe.Spec2Pipeline.extract_2d:step.py:546 Step extract_2d done INFO stpipe.Spec2Pipeline.srctype:step.py:430 Step srctype running with args (<MultiSlitModel from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_extract_2d.fits>,). INFO stpipe.Spec2Pipeline.srctype:step.py:434 Step srctype parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'source_type': None} INFO stpipe.Spec2Pipeline.srctype:srctype.py:39 Input EXP_TYPE is NRS_MSASPEC INFO stpipe.Spec2Pipeline.srctype:srctype.py:39 Input EXP_TYPE is NRS_MSASPEC INFO stpipe.Spec2Pipeline.srctype:srctype.py:164 source_id=227, stellarity=1.0000, type=POINT INFO stpipe.Spec2Pipeline.srctype:srctype.py:164 source_id=227, stellarity=1.0000, type=POINT INFO stpipe.Spec2Pipeline.srctype:srctype.py:164 source_id=279, stellarity=0.1000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:164 source_id=279, stellarity=0.1000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:164 source_id=443, stellarity=1.0000, type=POINT INFO stpipe.Spec2Pipeline.srctype:srctype.py:164 source_id=443, stellarity=1.0000, type=POINT INFO stpipe.Spec2Pipeline.srctype:srctype.py:164 source_id=482, stellarity=0.0000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:164 source_id=482, stellarity=0.0000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:164 source_id=2315, stellarity=0.2000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:164 source_id=2315, stellarity=0.2000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:step.py:1016 Saved model in f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_srctype.fits INFO stpipe.Spec2Pipeline.srctype:step.py:546 Step srctype done INFO stpipe.Spec2Pipeline.master_background_mos:step.py:430 Step master_background_mos running with args (<MultiSlitModel from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_srctype.fits>,). INFO stpipe.Spec2Pipeline.master_background_mos:step.py:434 Step master_background_mos parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None}}} WARNING stpipe.Spec2Pipeline.master_background_mos:master_background_mos_step.py:124 No background slits available for creating master background. Skipping INFO stpipe.Spec2Pipeline.master_background_mos:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Spec2Pipeline.master_background_mos:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Spec2Pipeline.master_background_mos:step.py:546 Step master_background_mos done INFO stpipe.Spec2Pipeline.wavecorr:step.py:430 Step wavecorr running with args (<MultiSlitModel from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_srctype.fits>,). INFO stpipe.Spec2Pipeline.wavecorr:step.py:434 Step wavecorr parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0'} INFO stpipe.Spec2Pipeline.wavecorr:wavecorr_step.py:56 Using WAVECORR reference file /grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0004.asdf INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:244 Detected a POINT source type in slit 1 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:244 Detected a POINT source type in slit 1 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:116 slit name 1 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:116 slit name 1 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:170 Using wavelength zero-point correction for aperture MOS INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:170 Using wavelength zero-point correction for aperture MOS INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:244 Detected a EXTENDED source type in slit 2 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:244 Detected a EXTENDED source type in slit 2 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:244 Detected a POINT source type in slit 3 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:244 Detected a POINT source type in slit 3 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:116 slit name 3 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:116 slit name 3 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:170 Using wavelength zero-point correction for aperture MOS INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:170 Using wavelength zero-point correction for aperture MOS INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:244 Detected a EXTENDED source type in slit 4 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:244 Detected a EXTENDED source type in slit 4 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:244 Detected a EXTENDED source type in slit 10 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:244 Detected a EXTENDED source type in slit 10 INFO stpipe.Spec2Pipeline.wavecorr:step.py:1016 Saved model in f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_wavecorr.fits INFO stpipe.Spec2Pipeline.wavecorr:step.py:546 Step wavecorr done INFO stpipe.Spec2Pipeline.flat_field:step.py:430 Step flat_field running with args (<MultiSlitModel from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_wavecorr.fits>,). INFO stpipe.Spec2Pipeline.flat_field:step.py:434 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:74 Input is MultiSlitModel of exposure type NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:201 No reference found for type FLAT DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:199 Using FFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:199 Using SFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:199 Using DFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit 1 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit 1 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 12679 out of 29952 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 12679 out of 29952 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 20 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 20 flat-field values <= 0 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit 2 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit 2 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 17531 out of 37828 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 17531 out of 37828 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 12 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 12 flat-field values <= 0 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit 3 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit 3 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 17875 out of 38584 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 17875 out of 38584 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 30 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 30 flat-field values <= 0 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit 4 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit 4 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 12892 out of 30524 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 12892 out of 30524 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 19 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 19 flat-field values <= 0 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit 10 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:367 Working on slit 10 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 17035 out of 38691 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1990 Number of NaNs in sci wavelength array = 17035 out of 38691 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 75 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2010 75 flat-field values <= 0 INFO stpipe.Spec2Pipeline.flat_field:step.py:1016 Saved model in f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_flat_field.fits INFO stpipe.Spec2Pipeline.flat_field:step.py:546 Step flat_field done INFO stpipe.Spec2Pipeline.pathloss:step.py:430 Step pathloss running with args (<MultiSlitModel from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_flat_field.fits>,). INFO stpipe.Spec2Pipeline.pathloss:step.py:434 Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None} INFO stpipe.Spec2Pipeline.pathloss:pathloss_step.py:38 Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:232 Input exposure type is NRS_MSASPEC INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:232 Input exposure type is NRS_MSASPEC INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:395 Working on slit 0 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:395 Working on slit 0 WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:757 Source is outside slit. WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:757 Source is outside slit. WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:405 No correction provided for slit 0. Skipping WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:405 No correction provided for slit 0. Skipping INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:395 Working on slit 1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:395 Working on slit 1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:395 Working on slit 2 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:395 Working on slit 2 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:395 Working on slit 3 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:395 Working on slit 3 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:395 Working on slit 4 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:395 Working on slit 4 INFO stpipe.Spec2Pipeline.pathloss:step.py:1016 Saved model in f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_pathloss.fits INFO stpipe.Spec2Pipeline.pathloss:step.py:546 Step pathloss done INFO stpipe.Spec2Pipeline.barshadow:step.py:430 Step barshadow running with args (<MultiSlitModel from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_pathloss.fits>,). INFO stpipe.Spec2Pipeline.barshadow:step.py:434 Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None} INFO stpipe.Spec2Pipeline.barshadow:barshadow_step.py:58 Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits DEBUG stpipe.Spec2Pipeline.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 1 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 1 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:170 Bar shadow correction skipped for slitlet 1 (source not uniform) INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:170 Bar shadow correction skipped for slitlet 1 (source not uniform) INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 2 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 2 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:170 Bar shadow correction skipped for slitlet 3 (source not uniform) INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:170 Bar shadow correction skipped for slitlet 3 (source not uniform) INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.Spec2Pipeline.barshadow:step.py:1016 Saved model in f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_barshadow.fits INFO stpipe.Spec2Pipeline.barshadow:step.py:546 Step barshadow done INFO stpipe.Spec2Pipeline.photom:step.py:430 Step photom running with args (<MultiSlitModel from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_barshadow.fits>,). INFO stpipe.Spec2Pipeline.photom:step.py:434 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None} DEBUG stpipe.Spec2Pipeline.photom:photom_step.py:35 Input is MultiSlitModel INFO stpipe.Spec2Pipeline.photom:photom_step.py:55 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits INFO stpipe.Spec2Pipeline.photom:photom_step.py:56 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits INFO stpipe.Spec2Pipeline.photom:photom.py:144 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.photom:photom.py:144 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.photom:photom.py:145 detector: NRS1 INFO stpipe.Spec2Pipeline.photom:photom.py:145 detector: NRS1 INFO stpipe.Spec2Pipeline.photom:photom.py:146 exp_type: NRS_MSASPEC INFO stpipe.Spec2Pipeline.photom:photom.py:146 exp_type: NRS_MSASPEC INFO stpipe.Spec2Pipeline.photom:photom.py:148 filter: F170LP INFO stpipe.Spec2Pipeline.photom:photom.py:148 filter: F170LP INFO stpipe.Spec2Pipeline.photom:photom.py:152 grating: G235M INFO stpipe.Spec2Pipeline.photom:photom.py:152 grating: G235M INFO stpipe.Spec2Pipeline.photom:photom.py:250 Working on slit 1 INFO stpipe.Spec2Pipeline.photom:photom.py:250 Working on slit 1 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:250 Working on slit 2 INFO stpipe.Spec2Pipeline.photom:photom.py:250 Working on slit 2 DEBUG stpipe.Spec2Pipeline.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:250 Working on slit 3 INFO stpipe.Spec2Pipeline.photom:photom.py:250 Working on slit 3 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:250 Working on slit 4 INFO stpipe.Spec2Pipeline.photom:photom.py:250 Working on slit 4 DEBUG stpipe.Spec2Pipeline.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:250 Working on slit 10 INFO stpipe.Spec2Pipeline.photom:photom.py:250 Working on slit 10 DEBUG stpipe.Spec2Pipeline.photom:photom.py:698 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.photom:photom.py:698 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:719 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:step.py:546 Step photom done INFO stpipe.Spec2Pipeline.resample_spec:step.py:430 Step resample_spec running with args (<MultiSlitModel from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_cal.fits>,). INFO stpipe.Spec2Pipeline.resample_spec:step.py:434 Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True} INFO stpipe.Spec2Pipeline.resample_spec:resample_spec_step.py:60 No DRIZPARS reffile INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: pixfrac=1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: pixfrac=1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: kernel='square' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: kernel='square' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: fillval='INDEF' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: fillval='INDEF' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: wht_type='ivm' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: wht_type='ivm' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: pscale_ratio=1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:257 using: pscale_ratio=1.0 INFO stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:37 Reorganizing data from exposure f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_cal.fits INFO stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:37 Reorganizing data from exposure f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_cal.fits DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 227 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 227 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 279 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 279 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 443 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 443 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 482 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 482 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 2315 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 2315 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1151.5), (-0.5, 25.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1151.5), (-0.5, 25.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (26, 1152) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (26, 1152) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (26, 1152) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (26, 1152) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (17, 1152) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (17, 1152) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (26, 1152) --> (17, 1152) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (26, 1152) --> (17, 1152) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1151.5), (-0.5, 25.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1151.5), (-0.5, 25.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (26, 1152) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (26, 1152) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (26, 1152) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (26, 1152) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1152) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1152) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (26, 1152) --> (17, 1152) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (26, 1152) --> (17, 1152) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1151.5), (-0.5, 25.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1151.5), (-0.5, 25.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (26, 1152) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (26, 1152) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (26, 1152) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (26, 1152) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1152) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1152) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (26, 1152) --> (17, 1152) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (26, 1152) --> (17, 1152) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1151.5), (-0.5, 25.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1151.5), (-0.5, 25.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (26, 1152) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (26, 1152) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (26, 1152) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (26, 1152) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1152) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1152) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (26, 1152) --> (17, 1152) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (26, 1152) --> (17, 1152) INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 53.163795694 -27.829795676 53.171654436 -27.829795676 53.171654436 -27.767276801 53.163795694 -27.767276801 INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 53.163795694 -27.829795676 53.171654436 -27.829795676 53.171654436 -27.767276801 53.163795694 -27.767276801 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1350.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1350.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (28, 1351) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (28, 1351) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (28, 1351) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (28, 1351) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (17, 1351) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (17, 1351) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (28, 1351) --> (17, 1351) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (28, 1351) --> (17, 1351) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1350.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1350.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (28, 1351) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (28, 1351) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (28, 1351) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (28, 1351) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1351) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1351) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (28, 1351) --> (17, 1351) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (28, 1351) --> (17, 1351) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1350.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1350.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (28, 1351) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (28, 1351) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (28, 1351) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (28, 1351) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1351) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1351) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (28, 1351) --> (17, 1351) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (28, 1351) --> (17, 1351) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1350.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1350.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (28, 1351) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (28, 1351) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (28, 1351) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (28, 1351) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1351) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1351) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (28, 1351) --> (17, 1351) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (28, 1351) --> (17, 1351) INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 53.154246024 -27.845384283 53.163292572 -27.845384283 53.163292572 -27.771900909 53.154246024 -27.771900909 INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 53.154246024 -27.845384283 53.163292572 -27.845384283 53.163292572 -27.771900909 53.154246024 -27.771900909 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1377.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1377.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (28, 1378) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (28, 1378) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (28, 1378) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (28, 1378) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (17, 1378) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (17, 1378) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (28, 1378) --> (17, 1378) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (28, 1378) --> (17, 1378) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1377.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1377.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (28, 1378) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (28, 1378) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (28, 1378) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (28, 1378) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1378) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1378) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (28, 1378) --> (17, 1378) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (28, 1378) --> (17, 1378) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1377.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1377.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (28, 1378) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (28, 1378) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (28, 1378) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (28, 1378) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1378) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1378) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (28, 1378) --> (17, 1378) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (28, 1378) --> (17, 1378) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1377.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1377.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (28, 1378) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (28, 1378) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (28, 1378) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (28, 1378) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1378) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1378) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (28, 1378) --> (17, 1378) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (28, 1378) --> (17, 1378) INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 53.149334244 -27.846933549 53.158554414 -27.846933549 53.158554414 -27.772004639 53.149334244 -27.772004639 INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 53.149334244 -27.846933549 53.158554414 -27.846933549 53.158554414 -27.772004639 53.149334244 -27.772004639 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1173.5), (-0.5, 25.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1173.5), (-0.5, 25.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (26, 1174) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (26, 1174) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (26, 1174) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (26, 1174) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (17, 1174) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (17, 1174) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (26, 1174) --> (17, 1174) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (26, 1174) --> (17, 1174) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1173.5), (-0.5, 25.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1173.5), (-0.5, 25.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (26, 1174) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (26, 1174) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (26, 1174) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (26, 1174) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1174) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1174) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (26, 1174) --> (17, 1174) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (26, 1174) --> (17, 1174) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1173.5), (-0.5, 25.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1173.5), (-0.5, 25.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (26, 1174) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (26, 1174) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (26, 1174) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (26, 1174) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1174) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1174) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (26, 1174) --> (17, 1174) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (26, 1174) --> (17, 1174) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1173.5), (-0.5, 25.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1173.5), (-0.5, 25.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (26, 1174) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (26, 1174) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (26, 1174) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (26, 1174) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1174) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1174) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (26, 1174) --> (17, 1174) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (26, 1174) --> (17, 1174) INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 53.157257481 -27.830642802 53.165253932 -27.830642802 53.165253932 -27.766988435 53.157257481 -27.766988435 INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 53.157257481 -27.830642802 53.165253932 -27.830642802 53.165253932 -27.766988435 53.157257481 -27.766988435 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:210 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (17, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (17, 1433) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 1433) --> (17, 1433) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 1433) --> (17, 1433) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1433) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (27, 1433) --> (17, 1433) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (27, 1433) --> (17, 1433) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1433) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (27, 1433) --> (17, 1433) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (27, 1433) --> (17, 1433) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:263 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:475 Output Sci shape: (17, 1433) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (27, 1433) --> (17, 1433) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:477 Drizzling (27, 1433) --> (17, 1433) INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 53.123454597 -27.848369367 53.133137534 -27.848369367 53.133137534 -27.770681081 53.123454597 -27.770681081 INFO stpipe.Spec2Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 53.123454597 -27.848369367 53.133137534 -27.848369367 53.133137534 -27.770681081 53.123454597 -27.770681081 INFO stpipe.Spec2Pipeline.resample_spec:step.py:1016 Saved model in f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_s2d.fits INFO stpipe.Spec2Pipeline.resample_spec:step.py:546 Step resample_spec done INFO stpipe.Spec2Pipeline.extract_1d:step.py:430 Step extract_1d running with args (<MultiSlitModel from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_s2d.fits>,). INFO stpipe.Spec2Pipeline.extract_1d:step.py:434 Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None} DEBUG stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:159 Input is a MultiSlitModel INFO stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:389 Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json INFO stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:397 Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2780 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2780 Turning on source position correction for exp_type = NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2805 Input is a MultiSlitModel. DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2805 Input is a MultiSlitModel. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit 1 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = True DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = True WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1449 WCS implies the target is at 216.01, which is outside the bounding box, WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1449 WCS implies the target is at 216.01, which is outside the bounding box, WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1450 so we can't get spectrum location using the WCS WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1450 so we can't get spectrum location using the WCS DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1301 Spectrum location from WCS used column/row 575 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1301 Spectrum location from WCS used column/row 575 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1151, ystart=4.5, ystop=11.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1151, ystart=4.5, ystop=11.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3770 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3770 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit 2 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit 2 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1350, ystart=4.5, ystop=11.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1350, ystart=4.5, ystop=11.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit 3 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit 3 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = True DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = True WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1449 WCS implies the target is at 187.13, which is outside the bounding box, WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1449 WCS implies the target is at 187.13, which is outside the bounding box, WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1450 so we can't get spectrum location using the WCS WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1450 so we can't get spectrum location using the WCS DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1301 Spectrum location from WCS used column/row 688 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1301 Spectrum location from WCS used column/row 688 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1377, ystart=4.5, ystop=11.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1377, ystart=4.5, ystop=11.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3770 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3770 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit 4 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit 4 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1173, ystart=4.5, ystop=11.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1173, ystart=4.5, ystop=11.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit 10 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2813 Working on slit 10 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2814 Slit is of type <class 'stdatamodels.properties.ObjectNode'> INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[4.0], [12.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1432, ystart=4.5, ystop=11.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1432, ystart=4.5, ystop=11.5 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2952 Not copying from the INT_TIMES table because this is not a TSO exposure. DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:2952 Not copying from the INT_TIMES table because this is not a TSO exposure. INFO stpipe.Spec2Pipeline.extract_1d:step.py:1016 Saved model in f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_x1d.fits INFO stpipe.Spec2Pipeline.extract_1d:step.py:546 Step extract_1d done INFO stpipe.Spec2Pipeline:calwebb_spec2.py:314 Finished processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod INFO stpipe.Spec2Pipeline:calwebb_spec2.py:138 Ending calwebb_spec2 INFO stpipe.Spec2Pipeline:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Spec2Pipeline:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Spec2Pipeline:step.py:1016 Saved model in f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_cal.fits INFO stpipe.Spec2Pipeline:step.py:546 Step Spec2Pipeline done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec2.py::test_nirspec_mos_spec2[msa_flagging] | 1.54 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec2.py::test_nirspec_mos_spec2[extract_2d] | 0.40 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec2.py::test_nirspec_mos_spec2[wavecorr] | 0.35 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec2.py::test_nirspec_mos_spec2[flat_field] | 0.82 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec2.py::test_nirspec_mos_spec2[srctype] | 0.45 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec2.py::test_nirspec_mos_spec2[pathloss] | 0.40 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec2.py::test_nirspec_mos_spec2[barshadow] | 0.46 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec2.py::test_nirspec_mos_spec2[cal] | 0.48 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec2.py::test_nirspec_mos_spec2[s2d] | 0.40 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec2.py::test_nirspec_mos_spec2[x1d] | 0.26 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec2_steps.py::test_flat_field_step_user_supplied_flat | 8.23 | |
|
------------------------------Captured stderr call------------------------------ 2022-10-06 05:04:43,461 - stpipe.FlatFieldStep - INFO - FlatFieldStep instance created. 2022-10-06 05:04:43,731 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp2/usf_wavecorr.fits',). 2022-10-06 05:04:43,732 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp2/usf_flat.fits', 'inverse': False} 2022-10-06 05:04:45,338 - stpipe.FlatFieldStep - INFO - User-supplied flat /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp2/usf_flat.fits given. Ignoring all flat reference files and flat creation. 2022-10-06 05:04:47,574 - stpipe.FlatFieldStep - INFO - Working on slit 1 2022-10-06 05:04:47,580 - stpipe.FlatFieldStep - INFO - Working on slit 2 2022-10-06 05:04:47,586 - stpipe.FlatFieldStep - INFO - Working on slit 3 2022-10-06 05:04:47,592 - stpipe.FlatFieldStep - INFO - Working on slit 4 2022-10-06 05:04:47,597 - stpipe.FlatFieldStep - INFO - Working on slit 10 2022-10-06 05:04:47,608 - stpipe.FlatFieldStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 05:04:47,608 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep done -------------------------------Captured log call-------------------------------- INFO stpipe.FlatFieldStep:step.py:366 FlatFieldStep instance created. INFO stpipe.FlatFieldStep:step.py:430 Step FlatFieldStep running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp2/usf_wavecorr.fits',). INFO stpipe.FlatFieldStep:step.py:434 Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp2/usf_flat.fits', 'inverse': False} DEBUG stpipe.FlatFieldStep:flat_field_step.py:74 Input is MultiSlitModel of exposure type NRS_MSASPEC INFO stpipe.FlatFieldStep:flat_field_step.py:96 User-supplied flat /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp2/usf_flat.fits given. Ignoring all flat reference files and flat creation. DEBUG stpipe.FlatFieldStep:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.FlatFieldStep:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. INFO stpipe.FlatFieldStep:flat_field.py:367 Working on slit 1 INFO stpipe.FlatFieldStep:flat_field.py:367 Working on slit 1 INFO stpipe.FlatFieldStep:flat_field.py:367 Working on slit 2 INFO stpipe.FlatFieldStep:flat_field.py:367 Working on slit 2 INFO stpipe.FlatFieldStep:flat_field.py:367 Working on slit 3 INFO stpipe.FlatFieldStep:flat_field.py:367 Working on slit 3 INFO stpipe.FlatFieldStep:flat_field.py:367 Working on slit 4 INFO stpipe.FlatFieldStep:flat_field.py:367 Working on slit 4 INFO stpipe.FlatFieldStep:flat_field.py:367 Working on slit 10 INFO stpipe.FlatFieldStep:flat_field.py:367 Working on slit 10 INFO stpipe.FlatFieldStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.FlatFieldStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.FlatFieldStep:step.py:546 Step FlatFieldStep done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec2_steps.py::test_ff_inv | 67.86 | |
|
------------------------------Captured stderr call------------------------------ 2022-10-06 05:04:51,587 - stpipe.FlatFieldStep - INFO - FlatFieldStep instance created. 2022-10-06 05:04:51,860 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). 2022-10-06 05:04:51,861 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2022-10-06 05:04:58,550 - stpipe.FlatFieldStep - INFO - Working on slit 1 2022-10-06 05:05:02,915 - stpipe.FlatFieldStep - INFO - Working on slit 2 2022-10-06 05:05:08,053 - stpipe.FlatFieldStep - INFO - Working on slit 3 2022-10-06 05:05:13,635 - stpipe.FlatFieldStep - INFO - Working on slit 4 2022-10-06 05:05:18,117 - stpipe.FlatFieldStep - INFO - Working on slit 10 2022-10-06 05:05:23,872 - stpipe.FlatFieldStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 05:05:23,872 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep done 2022-10-06 05:05:23,890 - stpipe.FlatFieldStep - INFO - FlatFieldStep instance created. 2022-10-06 05:05:24,317 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). 2022-10-06 05:05:24,318 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': True} 2022-10-06 05:05:32,166 - stpipe.FlatFieldStep - INFO - Working on slit 1 2022-10-06 05:05:36,574 - stpipe.FlatFieldStep - INFO - Working on slit 2 2022-10-06 05:05:41,731 - stpipe.FlatFieldStep - INFO - Working on slit 3 2022-10-06 05:05:46,974 - stpipe.FlatFieldStep - INFO - Working on slit 4 2022-10-06 05:05:51,446 - stpipe.FlatFieldStep - INFO - Working on slit 10 2022-10-06 05:05:57,605 - stpipe.FlatFieldStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 05:05:57,605 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep done -------------------------------Captured log call-------------------------------- INFO stpipe.FlatFieldStep:step.py:366 FlatFieldStep instance created. INFO stpipe.FlatFieldStep:step.py:430 Step FlatFieldStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). INFO stpipe.FlatFieldStep:step.py:434 Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.FlatFieldStep:flat_field_step.py:74 Input is MultiSlitModel of exposure type NRS_MSASPEC DEBUG stpipe.FlatFieldStep:flat_field_step.py:201 No reference found for type FLAT DEBUG stpipe.FlatFieldStep:flat_field_step.py:199 Using FFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits DEBUG stpipe.FlatFieldStep:flat_field_step.py:199 Using SFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits DEBUG stpipe.FlatFieldStep:flat_field_step.py:199 Using DFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits DEBUG stpipe.FlatFieldStep:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.FlatFieldStep:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. INFO stpipe.FlatFieldStep:flat_field.py:367 Working on slit 1 INFO stpipe.FlatFieldStep:flat_field.py:367 Working on slit 1 DEBUG stpipe.FlatFieldStep:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1990 Number of NaNs in sci wavelength array = 13831 out of 31104 DEBUG stpipe.FlatFieldStep:flat_field.py:1990 Number of NaNs in sci wavelength array = 13831 out of 31104 DEBUG stpipe.FlatFieldStep:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:2010 20 flat-field values <= 0 DEBUG stpipe.FlatFieldStep:flat_field.py:2010 20 flat-field values <= 0 INFO stpipe.FlatFieldStep:flat_field.py:367 Working on slit 2 INFO stpipe.FlatFieldStep:flat_field.py:367 Working on slit 2 DEBUG stpipe.FlatFieldStep:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1990 Number of NaNs in sci wavelength array = 18882 out of 39179 DEBUG stpipe.FlatFieldStep:flat_field.py:1990 Number of NaNs in sci wavelength array = 18882 out of 39179 DEBUG stpipe.FlatFieldStep:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:2010 12 flat-field values <= 0 DEBUG stpipe.FlatFieldStep:flat_field.py:2010 12 flat-field values <= 0 INFO stpipe.FlatFieldStep:flat_field.py:367 Working on slit 3 INFO stpipe.FlatFieldStep:flat_field.py:367 Working on slit 3 DEBUG stpipe.FlatFieldStep:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1990 Number of NaNs in sci wavelength array = 19253 out of 39962 DEBUG stpipe.FlatFieldStep:flat_field.py:1990 Number of NaNs in sci wavelength array = 19253 out of 39962 DEBUG stpipe.FlatFieldStep:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:2010 30 flat-field values <= 0 DEBUG stpipe.FlatFieldStep:flat_field.py:2010 30 flat-field values <= 0 INFO stpipe.FlatFieldStep:flat_field.py:367 Working on slit 4 INFO stpipe.FlatFieldStep:flat_field.py:367 Working on slit 4 DEBUG stpipe.FlatFieldStep:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1990 Number of NaNs in sci wavelength array = 14066 out of 31698 DEBUG stpipe.FlatFieldStep:flat_field.py:1990 Number of NaNs in sci wavelength array = 14066 out of 31698 DEBUG stpipe.FlatFieldStep:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:2010 19 flat-field values <= 0 DEBUG stpipe.FlatFieldStep:flat_field.py:2010 19 flat-field values <= 0 INFO stpipe.FlatFieldStep:flat_field.py:367 Working on slit 10 INFO stpipe.FlatFieldStep:flat_field.py:367 Working on slit 10 DEBUG stpipe.FlatFieldStep:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1990 Number of NaNs in sci wavelength array = 18468 out of 40124 DEBUG stpipe.FlatFieldStep:flat_field.py:1990 Number of NaNs in sci wavelength array = 18468 out of 40124 DEBUG stpipe.FlatFieldStep:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:2010 75 flat-field values <= 0 DEBUG stpipe.FlatFieldStep:flat_field.py:2010 75 flat-field values <= 0 INFO stpipe.FlatFieldStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.FlatFieldStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.FlatFieldStep:step.py:546 Step FlatFieldStep done INFO stpipe.FlatFieldStep:step.py:366 FlatFieldStep instance created. INFO stpipe.FlatFieldStep:step.py:430 Step FlatFieldStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). INFO stpipe.FlatFieldStep:step.py:434 Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': True} DEBUG stpipe.FlatFieldStep:flat_field_step.py:74 Input is MultiSlitModel of exposure type NRS_MSASPEC DEBUG stpipe.FlatFieldStep:flat_field_step.py:201 No reference found for type FLAT DEBUG stpipe.FlatFieldStep:flat_field_step.py:199 Using FFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits DEBUG stpipe.FlatFieldStep:flat_field_step.py:199 Using SFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits DEBUG stpipe.FlatFieldStep:flat_field_step.py:199 Using DFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits DEBUG stpipe.FlatFieldStep:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.FlatFieldStep:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. INFO stpipe.FlatFieldStep:flat_field.py:367 Working on slit 1 INFO stpipe.FlatFieldStep:flat_field.py:367 Working on slit 1 DEBUG stpipe.FlatFieldStep:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1990 Number of NaNs in sci wavelength array = 13831 out of 31104 DEBUG stpipe.FlatFieldStep:flat_field.py:1990 Number of NaNs in sci wavelength array = 13831 out of 31104 DEBUG stpipe.FlatFieldStep:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:2010 20 flat-field values <= 0 DEBUG stpipe.FlatFieldStep:flat_field.py:2010 20 flat-field values <= 0 INFO stpipe.FlatFieldStep:flat_field.py:367 Working on slit 2 INFO stpipe.FlatFieldStep:flat_field.py:367 Working on slit 2 DEBUG stpipe.FlatFieldStep:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1990 Number of NaNs in sci wavelength array = 18882 out of 39179 DEBUG stpipe.FlatFieldStep:flat_field.py:1990 Number of NaNs in sci wavelength array = 18882 out of 39179 DEBUG stpipe.FlatFieldStep:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:2010 12 flat-field values <= 0 DEBUG stpipe.FlatFieldStep:flat_field.py:2010 12 flat-field values <= 0 INFO stpipe.FlatFieldStep:flat_field.py:367 Working on slit 3 INFO stpipe.FlatFieldStep:flat_field.py:367 Working on slit 3 DEBUG stpipe.FlatFieldStep:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1990 Number of NaNs in sci wavelength array = 19253 out of 39962 DEBUG stpipe.FlatFieldStep:flat_field.py:1990 Number of NaNs in sci wavelength array = 19253 out of 39962 DEBUG stpipe.FlatFieldStep:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:2010 30 flat-field values <= 0 DEBUG stpipe.FlatFieldStep:flat_field.py:2010 30 flat-field values <= 0 INFO stpipe.FlatFieldStep:flat_field.py:367 Working on slit 4 INFO stpipe.FlatFieldStep:flat_field.py:367 Working on slit 4 DEBUG stpipe.FlatFieldStep:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1990 Number of NaNs in sci wavelength array = 14066 out of 31698 DEBUG stpipe.FlatFieldStep:flat_field.py:1990 Number of NaNs in sci wavelength array = 14066 out of 31698 DEBUG stpipe.FlatFieldStep:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:2010 19 flat-field values <= 0 DEBUG stpipe.FlatFieldStep:flat_field.py:2010 19 flat-field values <= 0 INFO stpipe.FlatFieldStep:flat_field.py:367 Working on slit 10 INFO stpipe.FlatFieldStep:flat_field.py:367 Working on slit 10 DEBUG stpipe.FlatFieldStep:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1970 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1990 Number of NaNs in sci wavelength array = 18468 out of 40124 DEBUG stpipe.FlatFieldStep:flat_field.py:1990 Number of NaNs in sci wavelength array = 18468 out of 40124 DEBUG stpipe.FlatFieldStep:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:1232 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:2010 75 flat-field values <= 0 DEBUG stpipe.FlatFieldStep:flat_field.py:2010 75 flat-field values <= 0 INFO stpipe.FlatFieldStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.FlatFieldStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.FlatFieldStep:step.py:546 Step FlatFieldStep done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec2_steps.py::test_pathloss_corrpars | 4.73 | |
|
------------------------------Captured stderr call------------------------------ 2022-10-06 05:05:59,646 - stpipe.PathLossStep - INFO - PathLossStep instance created. 2022-10-06 05:05:59,934 - stpipe.PathLossStep - INFO - Step PathLossStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). 2022-10-06 05:05:59,935 - stpipe.PathLossStep - INFO - Step PathLossStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} 2022-10-06 05:05:59,961 - stpipe.PathLossStep - INFO - Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits 2022-10-06 05:06:00,017 - stpipe.PathLossStep - INFO - Input exposure type is NRS_MSASPEC 2022-10-06 05:06:00,945 - stpipe.PathLossStep - INFO - Working on slit 0 2022-10-06 05:06:00,946 - stpipe.PathLossStep - WARNING - Source is outside slit. 2022-10-06 05:06:00,946 - stpipe.PathLossStep - WARNING - No correction provided for slit 0. Skipping 2022-10-06 05:06:00,946 - stpipe.PathLossStep - INFO - Working on slit 1 2022-10-06 05:06:00,968 - stpipe.PathLossStep - INFO - Working on slit 2 2022-10-06 05:06:00,989 - stpipe.PathLossStep - INFO - Working on slit 3 2022-10-06 05:06:01,011 - stpipe.PathLossStep - INFO - Working on slit 4 2022-10-06 05:06:01,036 - stpipe.PathLossStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 05:06:01,036 - stpipe.PathLossStep - INFO - Step PathLossStep done 2022-10-06 05:06:01,385 - stpipe.PathLossStep - INFO - Step PathLossStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). 2022-10-06 05:06:01,386 - stpipe.PathLossStep - INFO - Step PathLossStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'pathlossstep', 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} 2022-10-06 05:06:01,393 - stpipe.PathLossStep - INFO - Input exposure type is NRS_MSASPEC 2022-10-06 05:06:02,313 - stpipe.PathLossStep - INFO - Working on slit 0 2022-10-06 05:06:02,314 - stpipe.PathLossStep - WARNING - No correction provided for slit 0. Skipping 2022-10-06 05:06:02,314 - stpipe.PathLossStep - INFO - Working on slit 1 2022-10-06 05:06:02,320 - stpipe.PathLossStep - INFO - Working on slit 2 2022-10-06 05:06:02,327 - stpipe.PathLossStep - INFO - Working on slit 3 2022-10-06 05:06:02,334 - stpipe.PathLossStep - INFO - Working on slit 4 2022-10-06 05:06:02,342 - stpipe.PathLossStep - INFO - Step PathLossStep done -------------------------------Captured log call-------------------------------- INFO stpipe.PathLossStep:step.py:366 PathLossStep instance created. INFO stpipe.PathLossStep:step.py:430 Step PathLossStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). INFO stpipe.PathLossStep:step.py:434 Step PathLossStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} INFO stpipe.PathLossStep:pathloss_step.py:38 Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits INFO stpipe.PathLossStep:pathloss.py:232 Input exposure type is NRS_MSASPEC INFO stpipe.PathLossStep:pathloss.py:232 Input exposure type is NRS_MSASPEC INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 0 INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 0 WARNING stpipe.PathLossStep:pathloss.py:757 Source is outside slit. WARNING stpipe.PathLossStep:pathloss.py:757 Source is outside slit. WARNING stpipe.PathLossStep:pathloss.py:405 No correction provided for slit 0. Skipping WARNING stpipe.PathLossStep:pathloss.py:405 No correction provided for slit 0. Skipping INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 1 INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 1 INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 2 INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 2 INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 3 INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 3 INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 4 INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 4 INFO stpipe.PathLossStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.PathLossStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.PathLossStep:step.py:546 Step PathLossStep done INFO stpipe.PathLossStep:step.py:430 Step PathLossStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). INFO stpipe.PathLossStep:step.py:434 Step PathLossStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'pathlossstep', 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} INFO stpipe.PathLossStep:pathloss.py:232 Input exposure type is NRS_MSASPEC INFO stpipe.PathLossStep:pathloss.py:232 Input exposure type is NRS_MSASPEC INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 0 INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 0 WARNING stpipe.PathLossStep:pathloss.py:405 No correction provided for slit 0. Skipping WARNING stpipe.PathLossStep:pathloss.py:405 No correction provided for slit 0. Skipping INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 1 INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 1 INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 2 INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 2 INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 3 INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 3 INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 4 INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 4 INFO stpipe.PathLossStep:step.py:546 Step PathLossStep done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec2_steps.py::test_pathloss_inverse | 4.79 | |
|
------------------------------Captured stderr call------------------------------ 2022-10-06 05:06:04,256 - stpipe.PathLossStep - INFO - PathLossStep instance created. 2022-10-06 05:06:04,565 - stpipe.PathLossStep - INFO - Step PathLossStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). 2022-10-06 05:06:04,566 - stpipe.PathLossStep - INFO - Step PathLossStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} 2022-10-06 05:06:04,591 - stpipe.PathLossStep - INFO - Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits 2022-10-06 05:06:04,647 - stpipe.PathLossStep - INFO - Input exposure type is NRS_MSASPEC 2022-10-06 05:06:05,564 - stpipe.PathLossStep - INFO - Working on slit 0 2022-10-06 05:06:05,564 - stpipe.PathLossStep - WARNING - Source is outside slit. 2022-10-06 05:06:05,564 - stpipe.PathLossStep - WARNING - No correction provided for slit 0. Skipping 2022-10-06 05:06:05,565 - stpipe.PathLossStep - INFO - Working on slit 1 2022-10-06 05:06:05,586 - stpipe.PathLossStep - INFO - Working on slit 2 2022-10-06 05:06:05,607 - stpipe.PathLossStep - INFO - Working on slit 3 2022-10-06 05:06:05,635 - stpipe.PathLossStep - INFO - Working on slit 4 2022-10-06 05:06:05,661 - stpipe.PathLossStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 05:06:05,661 - stpipe.PathLossStep - INFO - Step PathLossStep done 2022-10-06 05:06:06,049 - stpipe.PathLossStep - INFO - Step PathLossStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). 2022-10-06 05:06:06,050 - stpipe.PathLossStep - INFO - Step PathLossStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'pathlossstep', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': None} 2022-10-06 05:06:06,074 - stpipe.PathLossStep - INFO - Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits 2022-10-06 05:06:06,132 - stpipe.PathLossStep - INFO - Input exposure type is NRS_MSASPEC 2022-10-06 05:06:07,056 - stpipe.PathLossStep - INFO - Working on slit 0 2022-10-06 05:06:07,057 - stpipe.PathLossStep - WARNING - Source is outside slit. 2022-10-06 05:06:07,057 - stpipe.PathLossStep - WARNING - No correction provided for slit 0. Skipping 2022-10-06 05:06:07,057 - stpipe.PathLossStep - INFO - Working on slit 1 2022-10-06 05:06:07,078 - stpipe.PathLossStep - INFO - Working on slit 2 2022-10-06 05:06:07,099 - stpipe.PathLossStep - INFO - Working on slit 3 2022-10-06 05:06:07,119 - stpipe.PathLossStep - INFO - Working on slit 4 2022-10-06 05:06:07,144 - stpipe.PathLossStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 05:06:07,144 - stpipe.PathLossStep - INFO - Step PathLossStep done -------------------------------Captured log call-------------------------------- INFO stpipe.PathLossStep:step.py:366 PathLossStep instance created. INFO stpipe.PathLossStep:step.py:430 Step PathLossStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). INFO stpipe.PathLossStep:step.py:434 Step PathLossStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} INFO stpipe.PathLossStep:pathloss_step.py:38 Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits INFO stpipe.PathLossStep:pathloss.py:232 Input exposure type is NRS_MSASPEC INFO stpipe.PathLossStep:pathloss.py:232 Input exposure type is NRS_MSASPEC INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 0 INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 0 WARNING stpipe.PathLossStep:pathloss.py:757 Source is outside slit. WARNING stpipe.PathLossStep:pathloss.py:757 Source is outside slit. WARNING stpipe.PathLossStep:pathloss.py:405 No correction provided for slit 0. Skipping WARNING stpipe.PathLossStep:pathloss.py:405 No correction provided for slit 0. Skipping INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 1 INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 1 INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 2 INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 2 INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 3 INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 3 INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 4 INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 4 INFO stpipe.PathLossStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.PathLossStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.PathLossStep:step.py:546 Step PathLossStep done INFO stpipe.PathLossStep:step.py:430 Step PathLossStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). INFO stpipe.PathLossStep:step.py:434 Step PathLossStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'pathlossstep', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': None} INFO stpipe.PathLossStep:pathloss_step.py:38 Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits INFO stpipe.PathLossStep:pathloss.py:232 Input exposure type is NRS_MSASPEC INFO stpipe.PathLossStep:pathloss.py:232 Input exposure type is NRS_MSASPEC INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 0 INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 0 WARNING stpipe.PathLossStep:pathloss.py:757 Source is outside slit. WARNING stpipe.PathLossStep:pathloss.py:757 Source is outside slit. WARNING stpipe.PathLossStep:pathloss.py:405 No correction provided for slit 0. Skipping WARNING stpipe.PathLossStep:pathloss.py:405 No correction provided for slit 0. Skipping INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 1 INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 1 INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 2 INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 2 INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 3 INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 3 INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 4 INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 4 INFO stpipe.PathLossStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.PathLossStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.PathLossStep:step.py:546 Step PathLossStep done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec2_steps.py::test_pathloss_source_type | 3.45 | |
|
------------------------------Captured stderr call------------------------------ 2022-10-06 05:06:09,216 - stpipe.PathLossStep - INFO - PathLossStep instance created. 2022-10-06 05:06:09,527 - stpipe.PathLossStep - INFO - Step PathLossStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). 2022-10-06 05:06:09,528 - stpipe.PathLossStep - INFO - Step PathLossStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'extended'} 2022-10-06 05:06:09,552 - stpipe.PathLossStep - INFO - Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits 2022-10-06 05:06:09,609 - stpipe.PathLossStep - INFO - Input exposure type is NRS_MSASPEC 2022-10-06 05:06:10,515 - stpipe.PathLossStep - INFO - Working on slit 0 2022-10-06 05:06:10,515 - stpipe.PathLossStep - WARNING - Source is outside slit. 2022-10-06 05:06:10,515 - stpipe.PathLossStep - WARNING - No correction provided for slit 0. Skipping 2022-10-06 05:06:10,515 - stpipe.PathLossStep - INFO - Working on slit 1 2022-10-06 05:06:10,536 - stpipe.PathLossStep - INFO - Working on slit 2 2022-10-06 05:06:10,556 - stpipe.PathLossStep - INFO - Working on slit 3 2022-10-06 05:06:10,578 - stpipe.PathLossStep - INFO - Working on slit 4 2022-10-06 05:06:10,602 - stpipe.PathLossStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 05:06:10,602 - stpipe.PathLossStep - INFO - Step PathLossStep done -------------------------------Captured log call-------------------------------- INFO stpipe.PathLossStep:step.py:366 PathLossStep instance created. INFO stpipe.PathLossStep:step.py:430 Step PathLossStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). INFO stpipe.PathLossStep:step.py:434 Step PathLossStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'extended'} INFO stpipe.PathLossStep:pathloss_step.py:38 Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits INFO stpipe.PathLossStep:pathloss.py:232 Input exposure type is NRS_MSASPEC INFO stpipe.PathLossStep:pathloss.py:232 Input exposure type is NRS_MSASPEC INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 0 INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 0 WARNING stpipe.PathLossStep:pathloss.py:757 Source is outside slit. WARNING stpipe.PathLossStep:pathloss.py:757 Source is outside slit. WARNING stpipe.PathLossStep:pathloss.py:405 No correction provided for slit 0. Skipping WARNING stpipe.PathLossStep:pathloss.py:405 No correction provided for slit 0. Skipping INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 1 INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 1 INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 2 INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 2 INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 3 INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 3 INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 4 INFO stpipe.PathLossStep:pathloss.py:395 Working on slit 4 INFO stpipe.PathLossStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.PathLossStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.PathLossStep:step.py:546 Step PathLossStep done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec2_steps.py::test_barshadow_corrpars | 6.53 | |
|
------------------------------Captured stderr call------------------------------ 2022-10-06 05:06:13,076 - stpipe.BarShadowStep - INFO - BarShadowStep instance created. 2022-10-06 05:06:13,682 - stpipe.BarShadowStep - INFO - Step BarShadowStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). 2022-10-06 05:06:13,683 - stpipe.BarShadowStep - INFO - Step BarShadowStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} 2022-10-06 05:06:13,716 - stpipe.BarShadowStep - INFO - Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits 2022-10-06 05:06:14,809 - stpipe.BarShadowStep - INFO - Working on slitlet 1 2022-10-06 05:06:14,823 - stpipe.BarShadowStep - INFO - Bar shadow correction skipped for slitlet 1 (source not uniform) 2022-10-06 05:06:14,829 - stpipe.BarShadowStep - INFO - Working on slitlet 2 2022-10-06 05:06:14,987 - stpipe.BarShadowStep - INFO - Working on slitlet 3 2022-10-06 05:06:15,002 - stpipe.BarShadowStep - INFO - Bar shadow correction skipped for slitlet 3 (source not uniform) 2022-10-06 05:06:15,009 - stpipe.BarShadowStep - INFO - Working on slitlet 4 2022-10-06 05:06:15,153 - stpipe.BarShadowStep - INFO - Working on slitlet 10 2022-10-06 05:06:15,330 - stpipe.BarShadowStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 05:06:15,330 - stpipe.BarShadowStep - INFO - Step BarShadowStep done 2022-10-06 05:06:16,005 - stpipe.BarShadowStep - INFO - Step BarShadowStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). 2022-10-06 05:06:16,006 - stpipe.BarShadowStep - INFO - Step BarShadowStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'barshadowstep', 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} 2022-10-06 05:06:17,100 - stpipe.BarShadowStep - INFO - Working on slitlet 1 2022-10-06 05:06:17,106 - stpipe.BarShadowStep - INFO - Working on slitlet 2 2022-10-06 05:06:17,113 - stpipe.BarShadowStep - INFO - Working on slitlet 3 2022-10-06 05:06:17,119 - stpipe.BarShadowStep - INFO - Working on slitlet 4 2022-10-06 05:06:17,125 - stpipe.BarShadowStep - INFO - Working on slitlet 10 2022-10-06 05:06:17,133 - stpipe.BarShadowStep - INFO - Step BarShadowStep done -------------------------------Captured log call-------------------------------- INFO stpipe.BarShadowStep:step.py:366 BarShadowStep instance created. INFO stpipe.BarShadowStep:step.py:430 Step BarShadowStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). INFO stpipe.BarShadowStep:step.py:434 Step BarShadowStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} INFO stpipe.BarShadowStep:barshadow_step.py:58 Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits DEBUG stpipe.BarShadowStep:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.BarShadowStep:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 1 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 1 INFO stpipe.BarShadowStep:bar_shadow.py:170 Bar shadow correction skipped for slitlet 1 (source not uniform) INFO stpipe.BarShadowStep:bar_shadow.py:170 Bar shadow correction skipped for slitlet 1 (source not uniform) INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 2 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 2 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.BarShadowStep:bar_shadow.py:170 Bar shadow correction skipped for slitlet 3 (source not uniform) INFO stpipe.BarShadowStep:bar_shadow.py:170 Bar shadow correction skipped for slitlet 3 (source not uniform) INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.BarShadowStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.BarShadowStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.BarShadowStep:step.py:546 Step BarShadowStep done INFO stpipe.BarShadowStep:step.py:430 Step BarShadowStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). INFO stpipe.BarShadowStep:step.py:434 Step BarShadowStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'barshadowstep', 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} DEBUG stpipe.BarShadowStep:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.BarShadowStep:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 1 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 1 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 2 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 2 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.BarShadowStep:step.py:546 Step BarShadowStep done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec2_steps.py::test_barshadow_inverse | 5.71 | |
|
------------------------------Captured stderr call------------------------------ 2022-10-06 05:06:19,150 - stpipe.BarShadowStep - INFO - BarShadowStep instance created. 2022-10-06 05:06:19,463 - stpipe.BarShadowStep - INFO - Step BarShadowStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). 2022-10-06 05:06:19,464 - stpipe.BarShadowStep - INFO - Step BarShadowStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} 2022-10-06 05:06:19,488 - stpipe.BarShadowStep - INFO - Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits 2022-10-06 05:06:20,451 - stpipe.BarShadowStep - INFO - Working on slitlet 1 2022-10-06 05:06:20,463 - stpipe.BarShadowStep - INFO - Bar shadow correction skipped for slitlet 1 (source not uniform) 2022-10-06 05:06:20,468 - stpipe.BarShadowStep - INFO - Working on slitlet 2 2022-10-06 05:06:20,665 - stpipe.BarShadowStep - INFO - Working on slitlet 3 2022-10-06 05:06:20,677 - stpipe.BarShadowStep - INFO - Bar shadow correction skipped for slitlet 3 (source not uniform) 2022-10-06 05:06:20,682 - stpipe.BarShadowStep - INFO - Working on slitlet 4 2022-10-06 05:06:20,853 - stpipe.BarShadowStep - INFO - Working on slitlet 10 2022-10-06 05:06:21,016 - stpipe.BarShadowStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 05:06:21,017 - stpipe.BarShadowStep - INFO - Step BarShadowStep done 2022-10-06 05:06:21,382 - stpipe.BarShadowStep - INFO - Step BarShadowStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). 2022-10-06 05:06:21,382 - stpipe.BarShadowStep - INFO - Step BarShadowStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'barshadowstep', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': None} 2022-10-06 05:06:21,406 - stpipe.BarShadowStep - INFO - Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits 2022-10-06 05:06:22,400 - stpipe.BarShadowStep - INFO - Working on slitlet 1 2022-10-06 05:06:22,412 - stpipe.BarShadowStep - INFO - Bar shadow correction skipped for slitlet 1 (source not uniform) 2022-10-06 05:06:22,417 - stpipe.BarShadowStep - INFO - Working on slitlet 2 2022-10-06 05:06:22,559 - stpipe.BarShadowStep - INFO - Working on slitlet 3 2022-10-06 05:06:22,571 - stpipe.BarShadowStep - INFO - Bar shadow correction skipped for slitlet 3 (source not uniform) 2022-10-06 05:06:22,577 - stpipe.BarShadowStep - INFO - Working on slitlet 4 2022-10-06 05:06:22,701 - stpipe.BarShadowStep - INFO - Working on slitlet 10 2022-10-06 05:06:22,856 - stpipe.BarShadowStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 05:06:22,857 - stpipe.BarShadowStep - INFO - Step BarShadowStep done -------------------------------Captured log call-------------------------------- INFO stpipe.BarShadowStep:step.py:366 BarShadowStep instance created. INFO stpipe.BarShadowStep:step.py:430 Step BarShadowStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). INFO stpipe.BarShadowStep:step.py:434 Step BarShadowStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} INFO stpipe.BarShadowStep:barshadow_step.py:58 Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits DEBUG stpipe.BarShadowStep:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.BarShadowStep:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 1 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 1 INFO stpipe.BarShadowStep:bar_shadow.py:170 Bar shadow correction skipped for slitlet 1 (source not uniform) INFO stpipe.BarShadowStep:bar_shadow.py:170 Bar shadow correction skipped for slitlet 1 (source not uniform) INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 2 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 2 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.BarShadowStep:bar_shadow.py:170 Bar shadow correction skipped for slitlet 3 (source not uniform) INFO stpipe.BarShadowStep:bar_shadow.py:170 Bar shadow correction skipped for slitlet 3 (source not uniform) INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.BarShadowStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.BarShadowStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.BarShadowStep:step.py:546 Step BarShadowStep done INFO stpipe.BarShadowStep:step.py:430 Step BarShadowStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). INFO stpipe.BarShadowStep:step.py:434 Step BarShadowStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'barshadowstep', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': None} INFO stpipe.BarShadowStep:barshadow_step.py:58 Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits DEBUG stpipe.BarShadowStep:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.BarShadowStep:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 1 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 1 INFO stpipe.BarShadowStep:bar_shadow.py:170 Bar shadow correction skipped for slitlet 1 (source not uniform) INFO stpipe.BarShadowStep:bar_shadow.py:170 Bar shadow correction skipped for slitlet 1 (source not uniform) INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 2 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 2 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.BarShadowStep:bar_shadow.py:170 Bar shadow correction skipped for slitlet 3 (source not uniform) INFO stpipe.BarShadowStep:bar_shadow.py:170 Bar shadow correction skipped for slitlet 3 (source not uniform) INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.BarShadowStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.BarShadowStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.BarShadowStep:step.py:546 Step BarShadowStep done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec2_steps.py::test_barshadow_source_type | 4.08 | |
|
------------------------------Captured stderr call------------------------------ 2022-10-06 05:06:24,944 - stpipe.BarShadowStep - INFO - BarShadowStep instance created. 2022-10-06 05:06:25,251 - stpipe.BarShadowStep - INFO - Step BarShadowStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). 2022-10-06 05:06:25,252 - stpipe.BarShadowStep - INFO - Step BarShadowStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'extended'} 2022-10-06 05:06:25,280 - stpipe.BarShadowStep - INFO - Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits 2022-10-06 05:06:26,253 - stpipe.BarShadowStep - INFO - Working on slitlet 1 2022-10-06 05:06:26,377 - stpipe.BarShadowStep - INFO - Working on slitlet 2 2022-10-06 05:06:26,520 - stpipe.BarShadowStep - INFO - Working on slitlet 3 2022-10-06 05:06:26,664 - stpipe.BarShadowStep - INFO - Working on slitlet 4 2022-10-06 05:06:26,786 - stpipe.BarShadowStep - INFO - Working on slitlet 10 2022-10-06 05:06:26,939 - stpipe.BarShadowStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 05:06:26,939 - stpipe.BarShadowStep - INFO - Step BarShadowStep done -------------------------------Captured log call-------------------------------- INFO stpipe.BarShadowStep:step.py:366 BarShadowStep instance created. INFO stpipe.BarShadowStep:step.py:430 Step BarShadowStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). INFO stpipe.BarShadowStep:step.py:434 Step BarShadowStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'extended'} INFO stpipe.BarShadowStep:barshadow_step.py:58 Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits DEBUG stpipe.BarShadowStep:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.BarShadowStep:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 1 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 1 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 2 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 2 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.BarShadowStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.BarShadowStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.BarShadowStep:step.py:546 Step BarShadowStep done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec2_steps.py::test_photom_corrpars | 5.10 | |
|
------------------------------Captured stderr call------------------------------ 2022-10-06 05:06:29,280 - stpipe.PhotomStep - INFO - PhotomStep instance created. 2022-10-06 05:06:29,612 - stpipe.PhotomStep - INFO - Step PhotomStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). 2022-10-06 05:06:29,612 - stpipe.PhotomStep - INFO - Step PhotomStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} 2022-10-06 05:06:29,654 - stpipe.PhotomStep - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits 2022-10-06 05:06:29,654 - stpipe.PhotomStep - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits 2022-10-06 05:06:30,564 - stpipe.PhotomStep - INFO - Using instrument: NIRSPEC 2022-10-06 05:06:30,564 - stpipe.PhotomStep - INFO - detector: NRS1 2022-10-06 05:06:30,564 - stpipe.PhotomStep - INFO - exp_type: NRS_MSASPEC 2022-10-06 05:06:30,564 - stpipe.PhotomStep - INFO - filter: F170LP 2022-10-06 05:06:30,564 - stpipe.PhotomStep - INFO - grating: G235M 2022-10-06 05:06:30,639 - stpipe.PhotomStep - INFO - Working on slit 1 2022-10-06 05:06:30,639 - stpipe.PhotomStep - INFO - PHOTMJSR value: 1 2022-10-06 05:06:30,648 - stpipe.PhotomStep - INFO - Working on slit 2 2022-10-06 05:06:30,648 - stpipe.PhotomStep - INFO - PHOTMJSR value: 1 2022-10-06 05:06:30,657 - stpipe.PhotomStep - INFO - Working on slit 3 2022-10-06 05:06:30,658 - stpipe.PhotomStep - INFO - PHOTMJSR value: 1 2022-10-06 05:06:30,667 - stpipe.PhotomStep - INFO - Working on slit 4 2022-10-06 05:06:30,667 - stpipe.PhotomStep - INFO - PHOTMJSR value: 1 2022-10-06 05:06:30,676 - stpipe.PhotomStep - INFO - Working on slit 10 2022-10-06 05:06:30,676 - stpipe.PhotomStep - INFO - PHOTMJSR value: 1 2022-10-06 05:06:30,689 - stpipe.PhotomStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 05:06:30,690 - stpipe.PhotomStep - INFO - Step PhotomStep done 2022-10-06 05:06:31,021 - stpipe.PhotomStep - INFO - Step PhotomStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). 2022-10-06 05:06:31,022 - stpipe.PhotomStep - INFO - Step PhotomStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'photomstep', 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} 2022-10-06 05:06:31,029 - stpipe.PhotomStep - INFO - Using previously specified correction parameters. 2022-10-06 05:06:31,029 - stpipe.PhotomStep - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits 2022-10-06 05:06:31,029 - stpipe.PhotomStep - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits 2022-10-06 05:06:31,920 - stpipe.PhotomStep - INFO - Using instrument: NIRSPEC 2022-10-06 05:06:31,920 - stpipe.PhotomStep - INFO - detector: NRS1 2022-10-06 05:06:31,921 - stpipe.PhotomStep - INFO - exp_type: NRS_MSASPEC 2022-10-06 05:06:31,921 - stpipe.PhotomStep - INFO - filter: F170LP 2022-10-06 05:06:31,921 - stpipe.PhotomStep - INFO - grating: G235M 2022-10-06 05:06:31,994 - stpipe.PhotomStep - INFO - Working on slit 1 2022-10-06 05:06:31,994 - stpipe.PhotomStep - INFO - PHOTMJSR value: 1 2022-10-06 05:06:32,004 - stpipe.PhotomStep - INFO - Working on slit 2 2022-10-06 05:06:32,004 - stpipe.PhotomStep - INFO - PHOTMJSR value: 1 2022-10-06 05:06:32,013 - stpipe.PhotomStep - INFO - Working on slit 3 2022-10-06 05:06:32,013 - stpipe.PhotomStep - INFO - PHOTMJSR value: 1 2022-10-06 05:06:32,022 - stpipe.PhotomStep - INFO - Working on slit 4 2022-10-06 05:06:32,022 - stpipe.PhotomStep - INFO - PHOTMJSR value: 1 2022-10-06 05:06:32,031 - stpipe.PhotomStep - INFO - Working on slit 10 2022-10-06 05:06:32,032 - stpipe.PhotomStep - INFO - PHOTMJSR value: 1 2022-10-06 05:06:32,043 - stpipe.PhotomStep - INFO - Step PhotomStep done -------------------------------Captured log call-------------------------------- INFO stpipe.PhotomStep:step.py:366 PhotomStep instance created. INFO stpipe.PhotomStep:step.py:430 Step PhotomStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). INFO stpipe.PhotomStep:step.py:434 Step PhotomStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} DEBUG stpipe.PhotomStep:photom_step.py:35 Input is MultiSlitModel INFO stpipe.PhotomStep:photom_step.py:55 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits INFO stpipe.PhotomStep:photom_step.py:56 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits INFO stpipe.PhotomStep:photom.py:144 Using instrument: NIRSPEC INFO stpipe.PhotomStep:photom.py:144 Using instrument: NIRSPEC INFO stpipe.PhotomStep:photom.py:145 detector: NRS1 INFO stpipe.PhotomStep:photom.py:145 detector: NRS1 INFO stpipe.PhotomStep:photom.py:146 exp_type: NRS_MSASPEC INFO stpipe.PhotomStep:photom.py:146 exp_type: NRS_MSASPEC INFO stpipe.PhotomStep:photom.py:148 filter: F170LP INFO stpipe.PhotomStep:photom.py:148 filter: F170LP INFO stpipe.PhotomStep:photom.py:152 grating: G235M INFO stpipe.PhotomStep:photom.py:152 grating: G235M INFO stpipe.PhotomStep:photom.py:250 Working on slit 1 INFO stpipe.PhotomStep:photom.py:250 Working on slit 1 INFO stpipe.PhotomStep:photom.py:719 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:719 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:250 Working on slit 2 INFO stpipe.PhotomStep:photom.py:250 Working on slit 2 INFO stpipe.PhotomStep:photom.py:719 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:719 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:250 Working on slit 3 INFO stpipe.PhotomStep:photom.py:250 Working on slit 3 INFO stpipe.PhotomStep:photom.py:719 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:719 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:250 Working on slit 4 INFO stpipe.PhotomStep:photom.py:250 Working on slit 4 INFO stpipe.PhotomStep:photom.py:719 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:719 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:250 Working on slit 10 INFO stpipe.PhotomStep:photom.py:250 Working on slit 10 INFO stpipe.PhotomStep:photom.py:719 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:719 PHOTMJSR value: 1 INFO stpipe.PhotomStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.PhotomStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.PhotomStep:step.py:546 Step PhotomStep done INFO stpipe.PhotomStep:step.py:430 Step PhotomStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). INFO stpipe.PhotomStep:step.py:434 Step PhotomStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'photomstep', 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} DEBUG stpipe.PhotomStep:photom_step.py:35 Input is MultiSlitModel INFO stpipe.PhotomStep:photom_step.py:46 Using previously specified correction parameters. INFO stpipe.PhotomStep:photom_step.py:55 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits INFO stpipe.PhotomStep:photom_step.py:56 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits INFO stpipe.PhotomStep:photom.py:144 Using instrument: NIRSPEC INFO stpipe.PhotomStep:photom.py:144 Using instrument: NIRSPEC INFO stpipe.PhotomStep:photom.py:145 detector: NRS1 INFO stpipe.PhotomStep:photom.py:145 detector: NRS1 INFO stpipe.PhotomStep:photom.py:146 exp_type: NRS_MSASPEC INFO stpipe.PhotomStep:photom.py:146 exp_type: NRS_MSASPEC INFO stpipe.PhotomStep:photom.py:148 filter: F170LP INFO stpipe.PhotomStep:photom.py:148 filter: F170LP INFO stpipe.PhotomStep:photom.py:152 grating: G235M INFO stpipe.PhotomStep:photom.py:152 grating: G235M INFO stpipe.PhotomStep:photom.py:250 Working on slit 1 INFO stpipe.PhotomStep:photom.py:250 Working on slit 1 INFO stpipe.PhotomStep:photom.py:719 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:719 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:250 Working on slit 2 INFO stpipe.PhotomStep:photom.py:250 Working on slit 2 INFO stpipe.PhotomStep:photom.py:719 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:719 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:250 Working on slit 3 INFO stpipe.PhotomStep:photom.py:250 Working on slit 3 INFO stpipe.PhotomStep:photom.py:719 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:719 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:250 Working on slit 4 INFO stpipe.PhotomStep:photom.py:250 Working on slit 4 INFO stpipe.PhotomStep:photom.py:719 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:719 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:250 Working on slit 10 INFO stpipe.PhotomStep:photom.py:250 Working on slit 10 INFO stpipe.PhotomStep:photom.py:719 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:719 PHOTMJSR value: 1 INFO stpipe.PhotomStep:step.py:546 Step PhotomStep done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec2_steps.py::test_photom_inverse | 4.95 | |
|
------------------------------Captured stderr call------------------------------ 2022-10-06 05:06:34,067 - stpipe.PhotomStep - INFO - PhotomStep instance created. 2022-10-06 05:06:34,468 - stpipe.PhotomStep - INFO - Step PhotomStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). 2022-10-06 05:06:34,470 - stpipe.PhotomStep - INFO - Step PhotomStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} 2022-10-06 05:06:34,513 - stpipe.PhotomStep - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits 2022-10-06 05:06:34,513 - stpipe.PhotomStep - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits 2022-10-06 05:06:35,452 - stpipe.PhotomStep - INFO - Using instrument: NIRSPEC 2022-10-06 05:06:35,452 - stpipe.PhotomStep - INFO - detector: NRS1 2022-10-06 05:06:35,452 - stpipe.PhotomStep - INFO - exp_type: NRS_MSASPEC 2022-10-06 05:06:35,452 - stpipe.PhotomStep - INFO - filter: F170LP 2022-10-06 05:06:35,452 - stpipe.PhotomStep - INFO - grating: G235M 2022-10-06 05:06:35,526 - stpipe.PhotomStep - INFO - Working on slit 1 2022-10-06 05:06:35,526 - stpipe.PhotomStep - INFO - PHOTMJSR value: 1 2022-10-06 05:06:35,535 - stpipe.PhotomStep - INFO - Working on slit 2 2022-10-06 05:06:35,535 - stpipe.PhotomStep - INFO - PHOTMJSR value: 1 2022-10-06 05:06:35,544 - stpipe.PhotomStep - INFO - Working on slit 3 2022-10-06 05:06:35,545 - stpipe.PhotomStep - INFO - PHOTMJSR value: 1 2022-10-06 05:06:35,553 - stpipe.PhotomStep - INFO - Working on slit 4 2022-10-06 05:06:35,554 - stpipe.PhotomStep - INFO - PHOTMJSR value: 1 2022-10-06 05:06:35,562 - stpipe.PhotomStep - INFO - Working on slit 10 2022-10-06 05:06:35,563 - stpipe.PhotomStep - INFO - PHOTMJSR value: 1 2022-10-06 05:06:35,579 - stpipe.PhotomStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 05:06:35,579 - stpipe.PhotomStep - INFO - Step PhotomStep done 2022-10-06 05:06:35,926 - stpipe.PhotomStep - INFO - Step PhotomStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). 2022-10-06 05:06:35,927 - stpipe.PhotomStep - INFO - Step PhotomStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'photomstep', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': None} 2022-10-06 05:06:35,968 - stpipe.PhotomStep - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits 2022-10-06 05:06:35,968 - stpipe.PhotomStep - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits 2022-10-06 05:06:36,880 - stpipe.PhotomStep - INFO - Using instrument: NIRSPEC 2022-10-06 05:06:36,880 - stpipe.PhotomStep - INFO - detector: NRS1 2022-10-06 05:06:36,880 - stpipe.PhotomStep - INFO - exp_type: NRS_MSASPEC 2022-10-06 05:06:36,880 - stpipe.PhotomStep - INFO - filter: F170LP 2022-10-06 05:06:36,880 - stpipe.PhotomStep - INFO - grating: G235M 2022-10-06 05:06:36,951 - stpipe.PhotomStep - INFO - Working on slit 1 2022-10-06 05:06:36,952 - stpipe.PhotomStep - INFO - PHOTMJSR value: 1 2022-10-06 05:06:36,960 - stpipe.PhotomStep - INFO - Working on slit 2 2022-10-06 05:06:36,961 - stpipe.PhotomStep - INFO - PHOTMJSR value: 1 2022-10-06 05:06:36,970 - stpipe.PhotomStep - INFO - Working on slit 3 2022-10-06 05:06:36,971 - stpipe.PhotomStep - INFO - PHOTMJSR value: 1 2022-10-06 05:06:36,979 - stpipe.PhotomStep - INFO - Working on slit 4 2022-10-06 05:06:36,980 - stpipe.PhotomStep - INFO - PHOTMJSR value: 1 2022-10-06 05:06:36,988 - stpipe.PhotomStep - INFO - Working on slit 10 2022-10-06 05:06:36,989 - stpipe.PhotomStep - INFO - PHOTMJSR value: 1 2022-10-06 05:06:37,002 - stpipe.PhotomStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 05:06:37,002 - stpipe.PhotomStep - INFO - Step PhotomStep done -------------------------------Captured log call-------------------------------- INFO stpipe.PhotomStep:step.py:366 PhotomStep instance created. INFO stpipe.PhotomStep:step.py:430 Step PhotomStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). INFO stpipe.PhotomStep:step.py:434 Step PhotomStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} DEBUG stpipe.PhotomStep:photom_step.py:35 Input is MultiSlitModel INFO stpipe.PhotomStep:photom_step.py:55 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits INFO stpipe.PhotomStep:photom_step.py:56 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits INFO stpipe.PhotomStep:photom.py:144 Using instrument: NIRSPEC INFO stpipe.PhotomStep:photom.py:144 Using instrument: NIRSPEC INFO stpipe.PhotomStep:photom.py:145 detector: NRS1 INFO stpipe.PhotomStep:photom.py:145 detector: NRS1 INFO stpipe.PhotomStep:photom.py:146 exp_type: NRS_MSASPEC INFO stpipe.PhotomStep:photom.py:146 exp_type: NRS_MSASPEC INFO stpipe.PhotomStep:photom.py:148 filter: F170LP INFO stpipe.PhotomStep:photom.py:148 filter: F170LP INFO stpipe.PhotomStep:photom.py:152 grating: G235M INFO stpipe.PhotomStep:photom.py:152 grating: G235M INFO stpipe.PhotomStep:photom.py:250 Working on slit 1 INFO stpipe.PhotomStep:photom.py:250 Working on slit 1 INFO stpipe.PhotomStep:photom.py:719 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:719 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:250 Working on slit 2 INFO stpipe.PhotomStep:photom.py:250 Working on slit 2 INFO stpipe.PhotomStep:photom.py:719 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:719 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:250 Working on slit 3 INFO stpipe.PhotomStep:photom.py:250 Working on slit 3 INFO stpipe.PhotomStep:photom.py:719 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:719 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:250 Working on slit 4 INFO stpipe.PhotomStep:photom.py:250 Working on slit 4 INFO stpipe.PhotomStep:photom.py:719 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:719 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:250 Working on slit 10 INFO stpipe.PhotomStep:photom.py:250 Working on slit 10 INFO stpipe.PhotomStep:photom.py:719 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:719 PHOTMJSR value: 1 INFO stpipe.PhotomStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.PhotomStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.PhotomStep:step.py:546 Step PhotomStep done INFO stpipe.PhotomStep:step.py:430 Step PhotomStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). INFO stpipe.PhotomStep:step.py:434 Step PhotomStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'photomstep', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': None} DEBUG stpipe.PhotomStep:photom_step.py:35 Input is MultiSlitModel INFO stpipe.PhotomStep:photom_step.py:55 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits INFO stpipe.PhotomStep:photom_step.py:56 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits INFO stpipe.PhotomStep:photom.py:144 Using instrument: NIRSPEC INFO stpipe.PhotomStep:photom.py:144 Using instrument: NIRSPEC INFO stpipe.PhotomStep:photom.py:145 detector: NRS1 INFO stpipe.PhotomStep:photom.py:145 detector: NRS1 INFO stpipe.PhotomStep:photom.py:146 exp_type: NRS_MSASPEC INFO stpipe.PhotomStep:photom.py:146 exp_type: NRS_MSASPEC INFO stpipe.PhotomStep:photom.py:148 filter: F170LP INFO stpipe.PhotomStep:photom.py:148 filter: F170LP INFO stpipe.PhotomStep:photom.py:152 grating: G235M INFO stpipe.PhotomStep:photom.py:152 grating: G235M INFO stpipe.PhotomStep:photom.py:250 Working on slit 1 INFO stpipe.PhotomStep:photom.py:250 Working on slit 1 INFO stpipe.PhotomStep:photom.py:719 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:719 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:250 Working on slit 2 INFO stpipe.PhotomStep:photom.py:250 Working on slit 2 INFO stpipe.PhotomStep:photom.py:719 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:719 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:250 Working on slit 3 INFO stpipe.PhotomStep:photom.py:250 Working on slit 3 INFO stpipe.PhotomStep:photom.py:719 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:719 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:250 Working on slit 4 INFO stpipe.PhotomStep:photom.py:250 Working on slit 4 INFO stpipe.PhotomStep:photom.py:719 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:719 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:250 Working on slit 10 INFO stpipe.PhotomStep:photom.py:250 Working on slit 10 INFO stpipe.PhotomStep:photom.py:719 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:719 PHOTMJSR value: 1 INFO stpipe.PhotomStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.PhotomStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.PhotomStep:step.py:546 Step PhotomStep done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00000-cal] | 166.30 | |
|
-----------------------------Captured stderr setup------------------------------ 2022-10-06 05:06:40,092 - stpipe.Spec3Pipeline - INFO - Spec3Pipeline instance created. 2022-10-06 05:06:40,093 - stpipe.Spec3Pipeline.assign_mtwcs - INFO - AssignMTWcsStep instance created. 2022-10-06 05:06:40,094 - stpipe.Spec3Pipeline.master_background - INFO - MasterBackgroundStep instance created. 2022-10-06 05:06:40,095 - stpipe.Spec3Pipeline.mrs_imatch - INFO - MRSIMatchStep instance created. 2022-10-06 05:06:40,096 - stpipe.Spec3Pipeline.outlier_detection - INFO - OutlierDetectionStep instance created. 2022-10-06 05:06:40,097 - stpipe.Spec3Pipeline.resample_spec - INFO - ResampleSpecStep instance created. 2022-10-06 05:06:40,098 - stpipe.Spec3Pipeline.cube_build - INFO - CubeBuildStep instance created. 2022-10-06 05:06:40,099 - stpipe.Spec3Pipeline.extract_1d - INFO - Extract1dStep instance created. 2022-10-06 05:06:40,100 - stpipe.Spec3Pipeline.photom - INFO - PhotomStep instance created. 2022-10-06 05:06:40,101 - stpipe.Spec3Pipeline.combine_1d - INFO - Combine1dStep instance created. 2022-10-06 05:06:40,382 - stpipe.Spec3Pipeline - INFO - Step Spec3Pipeline running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_20191210t193826_spec3_001_asn.json',). 2022-10-06 05:06:40,389 - stpipe.Spec3Pipeline - INFO - Step Spec3Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'steps': {'assign_mtwcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'assign_mtwcs', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0'}, 'master_background': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'user_background': None, 'save_background': False, 'force_subtract': False}, 'mrs_imatch': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'bkg_degree': 1, 'subtract': False}, 'outlier_detection': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'weight_type': 'ivm', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'nlow': 0, 'nhigh': 0, 'maskpt': 0.7, 'grow': 1, 'snr': '5.0 4.0', 'scale': '1.2 0.7', 'backg': 0.0, 'save_intermediate_results': False, 'resample_data': True, 'good_bits': '~DO_NOT_USE', 'scale_detection': False, 'allowed_memory': None, 'in_memory': False}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'drizzle', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'inverse': False, 'source_type': None}, 'combine_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'exptime_key': 'exposure_time'}}} 2022-10-06 05:06:41,388 - stpipe.Spec3Pipeline - INFO - Prefetching reference files for dataset: 'jw00626030001_02103_00001_nrs2_cal.fits' reftypes = ['apcorr', 'area', 'cubepar', 'drizpars', 'extract1d', 'photom', 'speckernel', 'specprofile', 'spectrace', 'wavemap'] 2022-10-06 05:06:41,398 - stpipe.Spec3Pipeline - INFO - Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits'. 2022-10-06 05:06:41,399 - stpipe.Spec3Pipeline - INFO - Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits'. 2022-10-06 05:06:41,400 - stpipe.Spec3Pipeline - INFO - Prefetch for CUBEPAR reference file is 'N/A'. 2022-10-06 05:06:41,400 - stpipe.Spec3Pipeline - INFO - Prefetch for DRIZPARS reference file is 'N/A'. 2022-10-06 05:06:41,400 - stpipe.Spec3Pipeline - INFO - Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json'. 2022-10-06 05:06:41,401 - stpipe.Spec3Pipeline - INFO - Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits'. 2022-10-06 05:06:41,402 - stpipe.Spec3Pipeline - INFO - Prefetch for SPECKERNEL reference file is 'N/A'. 2022-10-06 05:06:41,402 - stpipe.Spec3Pipeline - INFO - Prefetch for SPECPROFILE reference file is 'N/A'. 2022-10-06 05:06:41,402 - stpipe.Spec3Pipeline - INFO - Prefetch for SPECTRACE reference file is 'N/A'. 2022-10-06 05:06:41,402 - stpipe.Spec3Pipeline - INFO - Prefetch for WAVEMAP reference file is 'N/A'. 2022-10-06 05:06:41,402 - stpipe.Spec3Pipeline - INFO - Starting calwebb_spec3 ... 2022-10-06 05:06:52,701 - stpipe.Spec3Pipeline - INFO - Convert from exposure-based to source-based data. 2022-10-06 05:06:52,702 - stpipe.Spec3Pipeline - INFO - Reorganizing data from exposure jw00626030001_02103_00001_nrs2_cal.fits 2022-10-06 05:06:53,118 - stpipe.Spec3Pipeline - INFO - Reorganizing data from exposure jw00626030001_02103_00001_nrs1_cal.fits 2022-10-06 05:06:53,697 - stpipe.Spec3Pipeline - INFO - Reorganizing data from exposure jw00626030001_02103_00002_nrs2_cal.fits 2022-10-06 05:06:54,458 - stpipe.Spec3Pipeline - INFO - Reorganizing data from exposure jw00626030001_02103_00002_nrs1_cal.fits 2022-10-06 05:06:54,792 - stpipe.Spec3Pipeline - INFO - Reorganizing data from exposure jw00626030001_02103_00003_nrs1_cal.fits 2022-10-06 05:06:55,134 - stpipe.Spec3Pipeline - INFO - Reorganizing data from exposure jw00626030001_02103_00003_nrs2_cal.fits 2022-10-06 05:06:58,143 - stpipe.Spec3Pipeline - INFO - Saved model in jw00626-o030_s00443_nirspec_f170lp-g235m_cal.fits 2022-10-06 05:06:58,708 - stpipe.Spec3Pipeline.outlier_detection - INFO - Step outlier_detection running with args (<SourceModelContainer>,). 2022-10-06 05:06:58,709 - stpipe.Spec3Pipeline.outlier_detection - INFO - Step outlier_detection parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'crf', 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'weight_type': 'ivm', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'nlow': 0, 'nhigh': 0, 'maskpt': 0.7, 'grow': 1, 'snr': '5.0 4.0', 'scale': '1.2 0.7', 'backg': 0.0, 'save_intermediate_results': False, 'resample_data': True, 'good_bits': '~DO_NOT_USE', 'scale_detection': False, 'allowed_memory': None, 'in_memory': False} 2022-10-06 05:06:58,715 - stpipe.Spec3Pipeline.outlier_detection - INFO - Performing outlier detection on 6 inputs 2022-10-06 05:06:59,275 - stpipe.Spec3Pipeline.outlier_detection - INFO - Driz parameter kernal: square 2022-10-06 05:06:59,276 - stpipe.Spec3Pipeline.outlier_detection - INFO - Driz parameter pixfrac: 1.0 2022-10-06 05:06:59,276 - stpipe.Spec3Pipeline.outlier_detection - INFO - Driz parameter fillval: INDEF 2022-10-06 05:06:59,276 - stpipe.Spec3Pipeline.outlier_detection - INFO - Driz parameter weight_type: ivm 2022-10-06 05:07:00,223 - stpipe.Spec3Pipeline.outlier_detection - INFO - 2 exposures to drizzle together 2022-10-06 05:07:00,434 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (27, 1072) --> (27, 1300) 2022-10-06 05:07:00,629 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (27, 227) --> (27, 1300) 2022-10-06 05:07:00,896 - stpipe.Spec3Pipeline.outlier_detection - INFO - Exposure jw00626030001_02103_00001_nrs2_outlier_i2d.fits saved to file 2022-10-06 05:07:00,899 - stpipe.Spec3Pipeline.outlier_detection - INFO - 2 exposures to drizzle together 2022-10-06 05:07:01,109 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (27, 1072) --> (27, 1300) 2022-10-06 05:07:01,303 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (27, 227) --> (27, 1300) 2022-10-06 05:07:01,567 - stpipe.Spec3Pipeline.outlier_detection - INFO - Exposure jw00626030001_02103_00002_nrs2_outlier_i2d.fits saved to file 2022-10-06 05:07:01,570 - stpipe.Spec3Pipeline.outlier_detection - INFO - 2 exposures to drizzle together 2022-10-06 05:07:01,757 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (27, 227) --> (27, 1300) 2022-10-06 05:07:01,969 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (27, 1072) --> (27, 1300) 2022-10-06 05:07:02,240 - stpipe.Spec3Pipeline.outlier_detection - INFO - Exposure jw00626030001_02103_00003_nrs1_outlier_i2d.fits saved to file 2022-10-06 05:07:05,724 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting median... 2022-10-06 05:07:06,038 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (27, 1072) <-- (27, 1300) 2022-10-06 05:07:06,686 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (27, 227) <-- (27, 1300) 2022-10-06 05:07:07,346 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (27, 1072) <-- (27, 1300) 2022-10-06 05:07:08,689 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (27, 227) <-- (27, 1300) 2022-10-06 05:07:09,350 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (27, 227) <-- (27, 1300) 2022-10-06 05:07:10,035 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (27, 1072) <-- (27, 1300) 2022-10-06 05:07:10,418 - stpipe.Spec3Pipeline.outlier_detection - INFO - Flagging outliers 2022-10-06 05:07:10,951 - stpipe.Spec3Pipeline.outlier_detection - INFO - New pixels flagged as outliers: 0 (0.00%) 2022-10-06 05:07:12,186 - stpipe.Spec3Pipeline.outlier_detection - INFO - New pixels flagged as outliers: 0 (0.00%) 2022-10-06 05:07:12,714 - stpipe.Spec3Pipeline.outlier_detection - INFO - New pixels flagged as outliers: 0 (0.00%) 2022-10-06 05:07:13,216 - stpipe.Spec3Pipeline.outlier_detection - INFO - New pixels flagged as outliers: 0 (0.00%) 2022-10-06 05:07:14,428 - stpipe.Spec3Pipeline.outlier_detection - INFO - New pixels flagged as outliers: 0 (0.00%) 2022-10-06 05:07:14,945 - stpipe.Spec3Pipeline.outlier_detection - INFO - New pixels flagged as outliers: 0 (0.00%) 2022-10-06 05:07:17,720 - stpipe.Spec3Pipeline.outlier_detection - INFO - Saved model in jw00626-o030_s00443_nirspec_f170lp-g235m_crf.fits 2022-10-06 05:07:17,720 - stpipe.Spec3Pipeline.outlier_detection - INFO - Step outlier_detection done 2022-10-06 05:07:18,341 - stpipe.Spec3Pipeline.resample_spec - INFO - Step resample_spec running with args (<SourceModelContainer>,). 2022-10-06 05:07:18,343 - stpipe.Spec3Pipeline.resample_spec - INFO - Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True} 2022-10-06 05:07:18,520 - stpipe.Spec3Pipeline.resample_spec - INFO - No DRIZPARS reffile 2022-10-06 05:07:18,521 - stpipe.Spec3Pipeline.resample_spec - INFO - using: pixfrac=1.0 2022-10-06 05:07:18,521 - stpipe.Spec3Pipeline.resample_spec - INFO - using: kernel='square' 2022-10-06 05:07:18,521 - stpipe.Spec3Pipeline.resample_spec - INFO - using: fillval='INDEF' 2022-10-06 05:07:18,521 - stpipe.Spec3Pipeline.resample_spec - INFO - using: wht_type='ivm' 2022-10-06 05:07:18,521 - stpipe.Spec3Pipeline.resample_spec - INFO - using: pscale_ratio=1.0 2022-10-06 05:07:19,095 - stpipe.Spec3Pipeline.resample_spec - INFO - Driz parameter kernal: square 2022-10-06 05:07:19,095 - stpipe.Spec3Pipeline.resample_spec - INFO - Driz parameter pixfrac: 1.0 2022-10-06 05:07:19,095 - stpipe.Spec3Pipeline.resample_spec - INFO - Driz parameter fillval: INDEF 2022-10-06 05:07:19,095 - stpipe.Spec3Pipeline.resample_spec - INFO - Driz parameter weight_type: ivm 2022-10-06 05:07:19,267 - stpipe.Spec3Pipeline.resample_spec - INFO - Blending metadata for None 2022-10-06 05:07:20,255 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling science data 2022-10-06 05:07:20,310 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1072) --> (27, 1300) 2022-10-06 05:07:20,348 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 227) --> (27, 1300) 2022-10-06 05:07:20,403 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1072) --> (27, 1300) 2022-10-06 05:07:20,439 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 227) --> (27, 1300) 2022-10-06 05:07:20,473 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 227) --> (27, 1300) 2022-10-06 05:07:20,528 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1072) --> (27, 1300) 2022-10-06 05:07:20,532 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling var_rnoise 2022-10-06 05:07:20,584 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1072) --> (27, 1300) 2022-10-06 05:07:20,621 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 227) --> (27, 1300) 2022-10-06 05:07:20,674 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1072) --> (27, 1300) 2022-10-06 05:07:20,712 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 227) --> (27, 1300) 2022-10-06 05:07:20,746 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 227) --> (27, 1300) 2022-10-06 05:07:20,799 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1072) --> (27, 1300) 2022-10-06 05:07:20,804 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling var_poisson 2022-10-06 05:07:20,859 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1072) --> (27, 1300) 2022-10-06 05:07:20,902 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 227) --> (27, 1300) 2022-10-06 05:07:20,958 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1072) --> (27, 1300) 2022-10-06 05:07:20,997 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 227) --> (27, 1300) 2022-10-06 05:07:21,031 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 227) --> (27, 1300) 2022-10-06 05:07:21,085 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1072) --> (27, 1300) 2022-10-06 05:07:21,090 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling var_flat 2022-10-06 05:07:21,151 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1072) --> (27, 1300) 2022-10-06 05:07:21,190 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 227) --> (27, 1300) 2022-10-06 05:07:21,244 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1072) --> (27, 1300) 2022-10-06 05:07:21,282 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 227) --> (27, 1300) 2022-10-06 05:07:21,315 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 227) --> (27, 1300) 2022-10-06 05:07:21,370 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1072) --> (27, 1300) 2022-10-06 05:07:21,421 - stpipe.Spec3Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 98.773526785 -66.832161955 98.814160709 -66.832161955 98.814160709 -66.763084397 98.773526785 -66.763084397 2022-10-06 05:07:22,035 - stpipe.Spec3Pipeline.resample_spec - INFO - Saved model in jw00626-o030_s00443_nirspec_f170lp-g235m_s2d.fits 2022-10-06 05:07:22,035 - stpipe.Spec3Pipeline.resample_spec - INFO - Step resample_spec done 2022-10-06 05:07:22,729 - stpipe.Spec3Pipeline.extract_1d - INFO - Step extract_1d running with args (<SlitModel(27, 1300) from jw00626-o030_s00443_nirspec_f170lp-g235m_s2d.fits>,). 2022-10-06 05:07:22,730 - stpipe.Spec3Pipeline.extract_1d - INFO - Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None} 2022-10-06 05:07:22,977 - stpipe.Spec3Pipeline.extract_1d - INFO - Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json 2022-10-06 05:07:23,102 - stpipe.Spec3Pipeline.extract_1d - INFO - Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits 2022-10-06 05:07:23,142 - stpipe.Spec3Pipeline.extract_1d - INFO - Turning on source position correction for exp_type = NRS_MSASPEC 2022-10-06 05:07:23,142 - stpipe.Spec3Pipeline.extract_1d - INFO - Processing spectral order -1 2022-10-06 05:07:23,190 - stpipe.Spec3Pipeline.extract_1d - WARNING - WCS implies the target is at -84305406651168783656906520976933192204288.00, which is outside the bounding box, 2022-10-06 05:07:23,190 - stpipe.Spec3Pipeline.extract_1d - WARNING - so we can't get spectrum location using the WCS 2022-10-06 05:07:23,191 - stpipe.Spec3Pipeline.extract_1d - INFO - Using extraction limits: xstart=0, xstop=1299, ystart=9.5, ystop=16.5 2022-10-06 05:07:23,411 - stpipe.Spec3Pipeline.extract_1d - INFO - Applying Aperture correction. 2022-10-06 05:07:25,492 - stpipe.Spec3Pipeline.extract_1d - INFO - Saved model in jw00626-o030_s00443_nirspec_f170lp-g235m_x1d.fits 2022-10-06 05:07:25,492 - stpipe.Spec3Pipeline.extract_1d - INFO - Step extract_1d done 2022-10-06 05:07:27,485 - stpipe.Spec3Pipeline - INFO - Saved model in jw00626-o030_s00482_nirspec_f170lp-g235m_cal.fits 2022-10-06 05:07:28,111 - stpipe.Spec3Pipeline.outlier_detection - INFO - Step outlier_detection running with args (<SourceModelContainer>,). 2022-10-06 05:07:28,113 - stpipe.Spec3Pipeline.outlier_detection - INFO - Step outlier_detection parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'crf', 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'weight_type': 'ivm', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'nlow': 0, 'nhigh': 0, 'maskpt': 0.7, 'grow': 1, 'snr': '5.0 4.0', 'scale': '1.2 0.7', 'backg': 0.0, 'save_intermediate_results': False, 'resample_data': True, 'good_bits': '~DO_NOT_USE', 'scale_detection': False, 'allowed_memory': None, 'in_memory': False} 2022-10-06 05:07:28,118 - stpipe.Spec3Pipeline.outlier_detection - INFO - Performing outlier detection on 6 inputs 2022-10-06 05:07:28,653 - stpipe.Spec3Pipeline.outlier_detection - INFO - Driz parameter kernal: square 2022-10-06 05:07:28,653 - stpipe.Spec3Pipeline.outlier_detection - INFO - Driz parameter pixfrac: 1.0 2022-10-06 05:07:28,653 - stpipe.Spec3Pipeline.outlier_detection - INFO - Driz parameter fillval: INDEF 2022-10-06 05:07:28,653 - stpipe.Spec3Pipeline.outlier_detection - INFO - Driz parameter weight_type: ivm 2022-10-06 05:07:29,617 - stpipe.Spec3Pipeline.outlier_detection - INFO - 2 exposures to drizzle together 2022-10-06 05:07:29,825 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (25, 1022) --> (28, 1295) 2022-10-06 05:07:30,022 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (25, 271) --> (28, 1295) 2022-10-06 05:07:30,293 - stpipe.Spec3Pipeline.outlier_detection - INFO - Exposure jw00626030001_02103_00001_nrs2_outlier_i2d.fits saved to file 2022-10-06 05:07:30,296 - stpipe.Spec3Pipeline.outlier_detection - INFO - 2 exposures to drizzle together 2022-10-06 05:07:30,501 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (25, 1022) --> (28, 1295) 2022-10-06 05:07:30,695 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (25, 271) --> (28, 1295) 2022-10-06 05:07:30,963 - stpipe.Spec3Pipeline.outlier_detection - INFO - Exposure jw00626030001_02103_00002_nrs2_outlier_i2d.fits saved to file 2022-10-06 05:07:30,966 - stpipe.Spec3Pipeline.outlier_detection - INFO - 2 exposures to drizzle together 2022-10-06 05:07:31,153 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (25, 271) --> (28, 1295) 2022-10-06 05:07:31,358 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (25, 1022) --> (28, 1295) 2022-10-06 05:07:31,637 - stpipe.Spec3Pipeline.outlier_detection - INFO - Exposure jw00626030001_02103_00003_nrs1_outlier_i2d.fits saved to file 2022-10-06 05:07:35,304 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting median... 2022-10-06 05:07:35,613 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (25, 1022) <-- (28, 1295) 2022-10-06 05:07:36,309 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (25, 271) <-- (28, 1295) 2022-10-06 05:07:37,008 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (25, 1022) <-- (28, 1295) 2022-10-06 05:07:38,504 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (25, 271) <-- (28, 1295) 2022-10-06 05:07:39,172 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (25, 271) <-- (28, 1295) 2022-10-06 05:07:39,848 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (25, 1022) <-- (28, 1295) 2022-10-06 05:07:40,222 - stpipe.Spec3Pipeline.outlier_detection - INFO - Flagging outliers 2022-10-06 05:07:40,734 - stpipe.Spec3Pipeline.outlier_detection - INFO - New pixels flagged as outliers: 0 (0.00%) 2022-10-06 05:07:42,006 - stpipe.Spec3Pipeline.outlier_detection - INFO - New pixels flagged as outliers: 0 (0.00%) 2022-10-06 05:07:42,519 - stpipe.Spec3Pipeline.outlier_detection - INFO - New pixels flagged as outliers: 0 (0.00%) 2022-10-06 05:07:43,029 - stpipe.Spec3Pipeline.outlier_detection - INFO - New pixels flagged as outliers: 0 (0.00%) 2022-10-06 05:07:43,546 - stpipe.Spec3Pipeline.outlier_detection - INFO - New pixels flagged as outliers: 0 (0.00%) 2022-10-06 05:07:44,826 - stpipe.Spec3Pipeline.outlier_detection - INFO - New pixels flagged as outliers: 0 (0.00%) 2022-10-06 05:07:46,787 - stpipe.Spec3Pipeline.outlier_detection - INFO - Saved model in jw00626-o030_s00482_nirspec_f170lp-g235m_crf.fits 2022-10-06 05:07:46,787 - stpipe.Spec3Pipeline.outlier_detection - INFO - Step outlier_detection done 2022-10-06 05:07:47,561 - stpipe.Spec3Pipeline.resample_spec - INFO - Step resample_spec running with args (<SourceModelContainer>,). 2022-10-06 05:07:47,563 - stpipe.Spec3Pipeline.resample_spec - INFO - Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True} 2022-10-06 05:07:47,735 - stpipe.Spec3Pipeline.resample_spec - INFO - No DRIZPARS reffile 2022-10-06 05:07:47,736 - stpipe.Spec3Pipeline.resample_spec - INFO - using: pixfrac=1.0 2022-10-06 05:07:47,736 - stpipe.Spec3Pipeline.resample_spec - INFO - using: kernel='square' 2022-10-06 05:07:47,736 - stpipe.Spec3Pipeline.resample_spec - INFO - using: fillval='INDEF' 2022-10-06 05:07:47,736 - stpipe.Spec3Pipeline.resample_spec - INFO - using: wht_type='ivm' 2022-10-06 05:07:47,736 - stpipe.Spec3Pipeline.resample_spec - INFO - using: pscale_ratio=1.0 2022-10-06 05:07:48,276 - stpipe.Spec3Pipeline.resample_spec - INFO - Driz parameter kernal: square 2022-10-06 05:07:48,276 - stpipe.Spec3Pipeline.resample_spec - INFO - Driz parameter pixfrac: 1.0 2022-10-06 05:07:48,276 - stpipe.Spec3Pipeline.resample_spec - INFO - Driz parameter fillval: INDEF 2022-10-06 05:07:48,276 - stpipe.Spec3Pipeline.resample_spec - INFO - Driz parameter weight_type: ivm 2022-10-06 05:07:48,452 - stpipe.Spec3Pipeline.resample_spec - INFO - Blending metadata for None 2022-10-06 05:07:49,414 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling science data 2022-10-06 05:07:49,464 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 1022) --> (28, 1295) 2022-10-06 05:07:49,500 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 271) --> (28, 1295) 2022-10-06 05:07:49,550 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 1022) --> (28, 1295) 2022-10-06 05:07:49,584 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 271) --> (28, 1295) 2022-10-06 05:07:49,617 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 271) --> (28, 1295) 2022-10-06 05:07:49,665 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 1022) --> (28, 1295) 2022-10-06 05:07:49,668 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling var_rnoise 2022-10-06 05:07:49,717 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 1022) --> (28, 1295) 2022-10-06 05:07:49,754 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 271) --> (28, 1295) 2022-10-06 05:07:49,802 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 1022) --> (28, 1295) 2022-10-06 05:07:49,839 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 271) --> (28, 1295) 2022-10-06 05:07:49,872 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 271) --> (28, 1295) 2022-10-06 05:07:49,920 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 1022) --> (28, 1295) 2022-10-06 05:07:49,924 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling var_poisson 2022-10-06 05:07:49,973 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 1022) --> (28, 1295) 2022-10-06 05:07:50,009 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 271) --> (28, 1295) 2022-10-06 05:07:50,056 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 1022) --> (28, 1295) 2022-10-06 05:07:50,092 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 271) --> (28, 1295) 2022-10-06 05:07:50,123 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 271) --> (28, 1295) 2022-10-06 05:07:50,173 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 1022) --> (28, 1295) 2022-10-06 05:07:50,178 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling var_flat 2022-10-06 05:07:50,225 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 1022) --> (28, 1295) 2022-10-06 05:07:50,259 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 271) --> (28, 1295) 2022-10-06 05:07:50,308 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 1022) --> (28, 1295) 2022-10-06 05:07:50,343 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 271) --> (28, 1295) 2022-10-06 05:07:50,374 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 271) --> (28, 1295) 2022-10-06 05:07:50,423 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 1022) --> (28, 1295) 2022-10-06 05:07:50,470 - stpipe.Spec3Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 98.861764360 -66.840024665 98.901924259 -66.840024665 98.901924259 -66.771787767 98.861764360 -66.771787767 2022-10-06 05:07:51,079 - stpipe.Spec3Pipeline.resample_spec - INFO - Saved model in jw00626-o030_s00482_nirspec_f170lp-g235m_s2d.fits 2022-10-06 05:07:51,079 - stpipe.Spec3Pipeline.resample_spec - INFO - Step resample_spec done 2022-10-06 05:07:51,837 - stpipe.Spec3Pipeline.extract_1d - INFO - Step extract_1d running with args (<SlitModel(28, 1295) from jw00626-o030_s00482_nirspec_f170lp-g235m_s2d.fits>,). 2022-10-06 05:07:51,839 - stpipe.Spec3Pipeline.extract_1d - INFO - Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None} 2022-10-06 05:07:52,088 - stpipe.Spec3Pipeline.extract_1d - INFO - Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json 2022-10-06 05:07:52,210 - stpipe.Spec3Pipeline.extract_1d - INFO - Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits 2022-10-06 05:07:52,250 - stpipe.Spec3Pipeline.extract_1d - INFO - Turning on source position correction for exp_type = NRS_MSASPEC 2022-10-06 05:07:52,250 - stpipe.Spec3Pipeline.extract_1d - INFO - Processing spectral order -1 2022-10-06 05:07:52,250 - stpipe.Spec3Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2022-10-06 05:07:52,274 - stpipe.Spec3Pipeline.extract_1d - INFO - Using extraction limits: xstart=0, xstop=1294, ystart=10.0, ystop=17.0 2022-10-06 05:07:52,606 - stpipe.Spec3Pipeline.extract_1d - INFO - Saved model in jw00626-o030_s00482_nirspec_f170lp-g235m_x1d.fits 2022-10-06 05:07:52,606 - stpipe.Spec3Pipeline.extract_1d - INFO - Step extract_1d done 2022-10-06 05:07:54,585 - stpipe.Spec3Pipeline - INFO - Saved model in jw00626-o030_s00227_nirspec_f170lp-g235m_cal.fits 2022-10-06 05:07:55,242 - stpipe.Spec3Pipeline.outlier_detection - INFO - Step outlier_detection running with args (<SourceModelContainer>,). 2022-10-06 05:07:55,243 - stpipe.Spec3Pipeline.outlier_detection - INFO - Step outlier_detection parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'crf', 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'weight_type': 'ivm', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'nlow': 0, 'nhigh': 0, 'maskpt': 0.7, 'grow': 1, 'snr': '5.0 4.0', 'scale': '1.2 0.7', 'backg': 0.0, 'save_intermediate_results': False, 'resample_data': True, 'good_bits': '~DO_NOT_USE', 'scale_detection': False, 'allowed_memory': None, 'in_memory': False} 2022-10-06 05:07:55,249 - stpipe.Spec3Pipeline.outlier_detection - INFO - Performing outlier detection on 6 inputs 2022-10-06 05:07:55,804 - stpipe.Spec3Pipeline.outlier_detection - INFO - Driz parameter kernal: square 2022-10-06 05:07:55,805 - stpipe.Spec3Pipeline.outlier_detection - INFO - Driz parameter pixfrac: 1.0 2022-10-06 05:07:55,805 - stpipe.Spec3Pipeline.outlier_detection - INFO - Driz parameter fillval: INDEF 2022-10-06 05:07:55,805 - stpipe.Spec3Pipeline.outlier_detection - INFO - Driz parameter weight_type: ivm 2022-10-06 05:07:56,776 - stpipe.Spec3Pipeline.outlier_detection - INFO - 2 exposures to drizzle together 2022-10-06 05:07:56,968 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (27, 155) --> (27, 1295) 2022-10-06 05:07:57,193 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (27, 1139) --> (27, 1295) 2022-10-06 05:07:57,473 - stpipe.Spec3Pipeline.outlier_detection - INFO - Exposure jw00626030001_02103_00001_nrs2_outlier_i2d.fits saved to file 2022-10-06 05:07:57,476 - stpipe.Spec3Pipeline.outlier_detection - INFO - 2 exposures to drizzle together 2022-10-06 05:07:57,667 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (27, 155) --> (27, 1295) 2022-10-06 05:07:57,884 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (27, 1139) --> (27, 1295) 2022-10-06 05:07:58,158 - stpipe.Spec3Pipeline.outlier_detection - INFO - Exposure jw00626030001_02103_00002_nrs2_outlier_i2d.fits saved to file 2022-10-06 05:07:58,161 - stpipe.Spec3Pipeline.outlier_detection - INFO - 2 exposures to drizzle together 2022-10-06 05:07:58,375 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (27, 1139) --> (27, 1295) 2022-10-06 05:07:58,567 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (27, 155) --> (27, 1295) 2022-10-06 05:07:58,837 - stpipe.Spec3Pipeline.outlier_detection - INFO - Exposure jw00626030001_02103_00003_nrs1_outlier_i2d.fits saved to file 2022-10-06 05:08:02,520 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting median... 2022-10-06 05:08:02,809 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (27, 155) <-- (27, 1295) 2022-10-06 05:08:03,488 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (27, 1139) <-- (27, 1295) 2022-10-06 05:08:04,155 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (27, 155) <-- (27, 1295) 2022-10-06 05:08:05,655 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (27, 1139) <-- (27, 1295) 2022-10-06 05:08:06,343 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (27, 1139) <-- (27, 1295) 2022-10-06 05:08:07,001 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (27, 155) <-- (27, 1295) 2022-10-06 05:08:07,384 - stpipe.Spec3Pipeline.outlier_detection - INFO - Flagging outliers 2022-10-06 05:08:07,894 - stpipe.Spec3Pipeline.outlier_detection - INFO - New pixels flagged as outliers: 0 (0.00%) 2022-10-06 05:08:09,151 - stpipe.Spec3Pipeline.outlier_detection - INFO - New pixels flagged as outliers: 0 (0.00%) 2022-10-06 05:08:09,667 - stpipe.Spec3Pipeline.outlier_detection - INFO - New pixels flagged as outliers: 0 (0.00%) 2022-10-06 05:08:10,171 - stpipe.Spec3Pipeline.outlier_detection - INFO - New pixels flagged as outliers: 0 (0.00%) 2022-10-06 05:08:10,669 - stpipe.Spec3Pipeline.outlier_detection - INFO - New pixels flagged as outliers: 0 (0.00%) 2022-10-06 05:08:11,952 - stpipe.Spec3Pipeline.outlier_detection - INFO - New pixels flagged as outliers: 0 (0.00%) 2022-10-06 05:08:13,970 - stpipe.Spec3Pipeline.outlier_detection - INFO - Saved model in jw00626-o030_s00227_nirspec_f170lp-g235m_crf.fits 2022-10-06 05:08:13,971 - stpipe.Spec3Pipeline.outlier_detection - INFO - Step outlier_detection done 2022-10-06 05:08:14,764 - stpipe.Spec3Pipeline.resample_spec - INFO - Step resample_spec running with args (<SourceModelContainer>,). 2022-10-06 05:08:14,766 - stpipe.Spec3Pipeline.resample_spec - INFO - Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True} 2022-10-06 05:08:14,939 - stpipe.Spec3Pipeline.resample_spec - INFO - No DRIZPARS reffile 2022-10-06 05:08:14,940 - stpipe.Spec3Pipeline.resample_spec - INFO - using: pixfrac=1.0 2022-10-06 05:08:14,940 - stpipe.Spec3Pipeline.resample_spec - INFO - using: kernel='square' 2022-10-06 05:08:14,940 - stpipe.Spec3Pipeline.resample_spec - INFO - using: fillval='INDEF' 2022-10-06 05:08:14,940 - stpipe.Spec3Pipeline.resample_spec - INFO - using: wht_type='ivm' 2022-10-06 05:08:14,940 - stpipe.Spec3Pipeline.resample_spec - INFO - using: pscale_ratio=1.0 2022-10-06 05:08:15,509 - stpipe.Spec3Pipeline.resample_spec - INFO - Driz parameter kernal: square 2022-10-06 05:08:15,509 - stpipe.Spec3Pipeline.resample_spec - INFO - Driz parameter pixfrac: 1.0 2022-10-06 05:08:15,509 - stpipe.Spec3Pipeline.resample_spec - INFO - Driz parameter fillval: INDEF 2022-10-06 05:08:15,509 - stpipe.Spec3Pipeline.resample_spec - INFO - Driz parameter weight_type: ivm 2022-10-06 05:08:15,685 - stpipe.Spec3Pipeline.resample_spec - INFO - Blending metadata for None 2022-10-06 05:08:16,654 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling science data 2022-10-06 05:08:16,683 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 155) --> (27, 1295) 2022-10-06 05:08:16,739 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1139) --> (27, 1295) 2022-10-06 05:08:16,775 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 155) --> (27, 1295) 2022-10-06 05:08:16,829 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1139) --> (27, 1295) 2022-10-06 05:08:16,887 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1139) --> (27, 1295) 2022-10-06 05:08:16,919 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 155) --> (27, 1295) 2022-10-06 05:08:16,920 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling var_rnoise 2022-10-06 05:08:16,951 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 155) --> (27, 1295) 2022-10-06 05:08:17,005 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1139) --> (27, 1295) 2022-10-06 05:08:17,038 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 155) --> (27, 1295) 2022-10-06 05:08:17,093 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1139) --> (27, 1295) 2022-10-06 05:08:17,150 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1139) --> (27, 1295) 2022-10-06 05:08:17,183 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 155) --> (27, 1295) 2022-10-06 05:08:17,185 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling var_poisson 2022-10-06 05:08:17,214 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 155) --> (27, 1295) 2022-10-06 05:08:17,269 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1139) --> (27, 1295) 2022-10-06 05:08:17,302 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 155) --> (27, 1295) 2022-10-06 05:08:17,357 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1139) --> (27, 1295) 2022-10-06 05:08:17,418 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1139) --> (27, 1295) 2022-10-06 05:08:17,453 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 155) --> (27, 1295) 2022-10-06 05:08:17,455 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling var_flat 2022-10-06 05:08:17,485 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 155) --> (27, 1295) 2022-10-06 05:08:17,538 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1139) --> (27, 1295) 2022-10-06 05:08:17,572 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 155) --> (27, 1295) 2022-10-06 05:08:17,626 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1139) --> (27, 1295) 2022-10-06 05:08:17,682 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1139) --> (27, 1295) 2022-10-06 05:08:17,716 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 155) --> (27, 1295) 2022-10-06 05:08:17,760 - stpipe.Spec3Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 98.793532015 -66.806995913 98.833322584 -66.806995913 98.833322584 -66.737739336 98.793532015 -66.737739336 2022-10-06 05:08:18,373 - stpipe.Spec3Pipeline.resample_spec - INFO - Saved model in jw00626-o030_s00227_nirspec_f170lp-g235m_s2d.fits 2022-10-06 05:08:18,373 - stpipe.Spec3Pipeline.resample_spec - INFO - Step resample_spec done 2022-10-06 05:08:19,154 - stpipe.Spec3Pipeline.extract_1d - INFO - Step extract_1d running with args (<SlitModel(27, 1295) from jw00626-o030_s00227_nirspec_f170lp-g235m_s2d.fits>,). 2022-10-06 05:08:19,155 - stpipe.Spec3Pipeline.extract_1d - INFO - Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None} 2022-10-06 05:08:19,400 - stpipe.Spec3Pipeline.extract_1d - INFO - Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json 2022-10-06 05:08:19,524 - stpipe.Spec3Pipeline.extract_1d - INFO - Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits 2022-10-06 05:08:19,566 - stpipe.Spec3Pipeline.extract_1d - INFO - Turning on source position correction for exp_type = NRS_MSASPEC 2022-10-06 05:08:19,566 - stpipe.Spec3Pipeline.extract_1d - INFO - Processing spectral order -1 2022-10-06 05:08:19,566 - stpipe.Spec3Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2022-10-06 05:08:19,589 - stpipe.Spec3Pipeline.extract_1d - INFO - Using extraction limits: xstart=0, xstop=1294, ystart=9.5, ystop=16.5 2022-10-06 05:08:19,910 - stpipe.Spec3Pipeline.extract_1d - INFO - Saved model in jw00626-o030_s00227_nirspec_f170lp-g235m_x1d.fits 2022-10-06 05:08:19,910 - stpipe.Spec3Pipeline.extract_1d - INFO - Step extract_1d done 2022-10-06 05:08:20,970 - stpipe.Spec3Pipeline - INFO - Saved model in jw00626-o030_s00279_nirspec_f170lp-g235m_cal.fits 2022-10-06 05:08:21,715 - stpipe.Spec3Pipeline.outlier_detection - INFO - Step outlier_detection running with args (<SourceModelContainer>,). 2022-10-06 05:08:21,717 - stpipe.Spec3Pipeline.outlier_detection - INFO - Step outlier_detection parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'crf', 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'weight_type': 'ivm', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'nlow': 0, 'nhigh': 0, 'maskpt': 0.7, 'grow': 1, 'snr': '5.0 4.0', 'scale': '1.2 0.7', 'backg': 0.0, 'save_intermediate_results': False, 'resample_data': True, 'good_bits': '~DO_NOT_USE', 'scale_detection': False, 'allowed_memory': None, 'in_memory': False} 2022-10-06 05:08:21,723 - stpipe.Spec3Pipeline.outlier_detection - INFO - Performing outlier detection on 3 inputs 2022-10-06 05:08:22,196 - stpipe.Spec3Pipeline.outlier_detection - INFO - Driz parameter kernal: square 2022-10-06 05:08:22,196 - stpipe.Spec3Pipeline.outlier_detection - INFO - Driz parameter pixfrac: 1.0 2022-10-06 05:08:22,196 - stpipe.Spec3Pipeline.outlier_detection - INFO - Driz parameter fillval: INDEF 2022-10-06 05:08:22,196 - stpipe.Spec3Pipeline.outlier_detection - INFO - Driz parameter weight_type: ivm 2022-10-06 05:08:22,707 - stpipe.Spec3Pipeline.outlier_detection - INFO - 1 exposures to drizzle together 2022-10-06 05:08:22,944 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (29, 1338) --> (27, 1340) 2022-10-06 05:08:23,236 - stpipe.Spec3Pipeline.outlier_detection - INFO - Exposure jw00626030001_02103_00001_nrs1_outlier_i2d.fits saved to file 2022-10-06 05:08:23,239 - stpipe.Spec3Pipeline.outlier_detection - INFO - 1 exposures to drizzle together 2022-10-06 05:08:23,471 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (29, 1338) --> (27, 1340) 2022-10-06 05:08:23,761 - stpipe.Spec3Pipeline.outlier_detection - INFO - Exposure jw00626030001_02103_00002_nrs1_outlier_i2d.fits saved to file 2022-10-06 05:08:23,764 - stpipe.Spec3Pipeline.outlier_detection - INFO - 1 exposures to drizzle together 2022-10-06 05:08:23,996 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (29, 1338) --> (27, 1340) 2022-10-06 05:08:24,289 - stpipe.Spec3Pipeline.outlier_detection - INFO - Exposure jw00626030001_02103_00003_nrs1_outlier_i2d.fits saved to file 2022-10-06 05:08:27,407 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting median... 2022-10-06 05:08:28,614 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (29, 1338) <-- (27, 1340) 2022-10-06 05:08:29,366 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (29, 1338) <-- (27, 1340) 2022-10-06 05:08:30,120 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (29, 1338) <-- (27, 1340) 2022-10-06 05:08:30,525 - stpipe.Spec3Pipeline.outlier_detection - INFO - Flagging outliers 2022-10-06 05:08:31,089 - stpipe.Spec3Pipeline.outlier_detection - INFO - New pixels flagged as outliers: 2 (0.01%) 2022-10-06 05:08:32,504 - stpipe.Spec3Pipeline.outlier_detection - INFO - New pixels flagged as outliers: 0 (0.00%) 2022-10-06 05:08:33,073 - stpipe.Spec3Pipeline.outlier_detection - INFO - New pixels flagged as outliers: 1 (0.00%) 2022-10-06 05:08:34,159 - stpipe.Spec3Pipeline.outlier_detection - INFO - Saved model in jw00626-o030_s00279_nirspec_f170lp-g235m_crf.fits 2022-10-06 05:08:34,159 - stpipe.Spec3Pipeline.outlier_detection - INFO - Step outlier_detection done 2022-10-06 05:08:34,899 - stpipe.Spec3Pipeline.resample_spec - INFO - Step resample_spec running with args (<SourceModelContainer>,). 2022-10-06 05:08:34,901 - stpipe.Spec3Pipeline.resample_spec - INFO - Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True} 2022-10-06 05:08:35,070 - stpipe.Spec3Pipeline.resample_spec - INFO - No DRIZPARS reffile 2022-10-06 05:08:35,071 - stpipe.Spec3Pipeline.resample_spec - INFO - using: pixfrac=1.0 2022-10-06 05:08:35,071 - stpipe.Spec3Pipeline.resample_spec - INFO - using: kernel='square' 2022-10-06 05:08:35,071 - stpipe.Spec3Pipeline.resample_spec - INFO - using: fillval='INDEF' 2022-10-06 05:08:35,071 - stpipe.Spec3Pipeline.resample_spec - INFO - using: wht_type='ivm' 2022-10-06 05:08:35,071 - stpipe.Spec3Pipeline.resample_spec - INFO - using: pscale_ratio=1.0 2022-10-06 05:08:35,527 - stpipe.Spec3Pipeline.resample_spec - INFO - Driz parameter kernal: square 2022-10-06 05:08:35,527 - stpipe.Spec3Pipeline.resample_spec - INFO - Driz parameter pixfrac: 1.0 2022-10-06 05:08:35,527 - stpipe.Spec3Pipeline.resample_spec - INFO - Driz parameter fillval: INDEF 2022-10-06 05:08:35,527 - stpipe.Spec3Pipeline.resample_spec - INFO - Driz parameter weight_type: ivm 2022-10-06 05:08:35,704 - stpipe.Spec3Pipeline.resample_spec - INFO - Blending metadata for None 2022-10-06 05:08:36,656 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling science data 2022-10-06 05:08:36,723 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (29, 1338) --> (27, 1340) 2022-10-06 05:08:36,789 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (29, 1338) --> (27, 1340) 2022-10-06 05:08:36,858 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (29, 1338) --> (27, 1340) 2022-10-06 05:08:36,863 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling var_rnoise 2022-10-06 05:08:36,924 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (29, 1338) --> (27, 1340) 2022-10-06 05:08:36,992 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (29, 1338) --> (27, 1340) 2022-10-06 05:08:37,060 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (29, 1338) --> (27, 1340) 2022-10-06 05:08:37,066 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling var_poisson 2022-10-06 05:08:37,127 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (29, 1338) --> (27, 1340) 2022-10-06 05:08:37,194 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (29, 1338) --> (27, 1340) 2022-10-06 05:08:37,262 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (29, 1338) --> (27, 1340) 2022-10-06 05:08:37,268 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling var_flat 2022-10-06 05:08:37,330 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (29, 1338) --> (27, 1340) 2022-10-06 05:08:37,398 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (29, 1338) --> (27, 1340) 2022-10-06 05:08:37,465 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (29, 1338) --> (27, 1340) 2022-10-06 05:08:37,512 - stpipe.Spec3Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 98.813500981 -66.803215334 98.854433604 -66.803215334 98.854433604 -66.731487702 98.813500981 -66.731487702 2022-10-06 05:08:38,127 - stpipe.Spec3Pipeline.resample_spec - INFO - Saved model in jw00626-o030_s00279_nirspec_f170lp-g235m_s2d.fits 2022-10-06 05:08:38,127 - stpipe.Spec3Pipeline.resample_spec - INFO - Step resample_spec done 2022-10-06 05:08:38,913 - stpipe.Spec3Pipeline.extract_1d - INFO - Step extract_1d running with args (<SlitModel(27, 1340) from jw00626-o030_s00279_nirspec_f170lp-g235m_s2d.fits>,). 2022-10-06 05:08:38,915 - stpipe.Spec3Pipeline.extract_1d - INFO - Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None} 2022-10-06 05:08:39,160 - stpipe.Spec3Pipeline.extract_1d - INFO - Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json 2022-10-06 05:08:39,281 - stpipe.Spec3Pipeline.extract_1d - INFO - Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits 2022-10-06 05:08:39,321 - stpipe.Spec3Pipeline.extract_1d - INFO - Turning on source position correction for exp_type = NRS_MSASPEC 2022-10-06 05:08:39,321 - stpipe.Spec3Pipeline.extract_1d - INFO - Processing spectral order -1 2022-10-06 05:08:39,370 - stpipe.Spec3Pipeline.extract_1d - WARNING - WCS implies the target is at -85298059111162142057930660268764680945664.00, which is outside the bounding box, 2022-10-06 05:08:39,370 - stpipe.Spec3Pipeline.extract_1d - WARNING - so we can't get spectrum location using the WCS 2022-10-06 05:08:39,370 - stpipe.Spec3Pipeline.extract_1d - INFO - Using extraction limits: xstart=0, xstop=1339, ystart=9.5, ystop=16.5 2022-10-06 05:08:39,597 - stpipe.Spec3Pipeline.extract_1d - INFO - Applying Aperture correction. 2022-10-06 05:08:41,805 - stpipe.Spec3Pipeline.extract_1d - INFO - Saved model in jw00626-o030_s00279_nirspec_f170lp-g235m_x1d.fits 2022-10-06 05:08:41,805 - stpipe.Spec3Pipeline.extract_1d - INFO - Step extract_1d done 2022-10-06 05:08:43,025 - stpipe.Spec3Pipeline - INFO - Saved model in jw00626-o030_s00000_nirspec_f170lp-g235m_cal.fits 2022-10-06 05:08:44,098 - stpipe.Spec3Pipeline.outlier_detection - INFO - Step outlier_detection running with args (<SourceModelContainer>,). 2022-10-06 05:08:44,100 - stpipe.Spec3Pipeline.outlier_detection - INFO - Step outlier_detection parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'crf', 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'weight_type': 'ivm', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'nlow': 0, 'nhigh': 0, 'maskpt': 0.7, 'grow': 1, 'snr': '5.0 4.0', 'scale': '1.2 0.7', 'backg': 0.0, 'save_intermediate_results': False, 'resample_data': True, 'good_bits': '~DO_NOT_USE', 'scale_detection': False, 'allowed_memory': None, 'in_memory': False} 2022-10-06 05:08:44,106 - stpipe.Spec3Pipeline.outlier_detection - INFO - Performing outlier detection on 3 inputs 2022-10-06 05:08:44,482 - stpipe.Spec3Pipeline.outlier_detection - INFO - Driz parameter kernal: square 2022-10-06 05:08:44,482 - stpipe.Spec3Pipeline.outlier_detection - INFO - Driz parameter pixfrac: 1.0 2022-10-06 05:08:44,482 - stpipe.Spec3Pipeline.outlier_detection - INFO - Driz parameter fillval: INDEF 2022-10-06 05:08:44,482 - stpipe.Spec3Pipeline.outlier_detection - INFO - Driz parameter weight_type: ivm 2022-10-06 05:08:44,977 - stpipe.Spec3Pipeline.outlier_detection - INFO - 1 exposures to drizzle together 2022-10-06 05:08:45,189 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (18, 1331) --> (22, 1334) 2022-10-06 05:08:45,480 - stpipe.Spec3Pipeline.outlier_detection - INFO - Exposure jw00626030001_02103_00001_nrs1_outlier_i2d.fits saved to file 2022-10-06 05:08:45,483 - stpipe.Spec3Pipeline.outlier_detection - INFO - 1 exposures to drizzle together 2022-10-06 05:08:45,701 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (18, 1332) --> (22, 1334) 2022-10-06 05:08:45,990 - stpipe.Spec3Pipeline.outlier_detection - INFO - Exposure jw00626030001_02103_00002_nrs1_outlier_i2d.fits saved to file 2022-10-06 05:08:45,993 - stpipe.Spec3Pipeline.outlier_detection - INFO - 1 exposures to drizzle together 2022-10-06 05:08:46,200 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (18, 1332) --> (22, 1334) 2022-10-06 05:08:46,477 - stpipe.Spec3Pipeline.outlier_detection - INFO - Exposure jw00626030001_02103_00003_nrs1_outlier_i2d.fits saved to file 2022-10-06 05:08:49,484 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting median... 2022-10-06 05:08:50,569 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (18, 1331) <-- (22, 1334) 2022-10-06 05:08:51,259 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (18, 1332) <-- (22, 1334) 2022-10-06 05:08:51,941 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (18, 1332) <-- (22, 1334) 2022-10-06 05:08:52,308 - stpipe.Spec3Pipeline.outlier_detection - INFO - Flagging outliers 2022-10-06 05:08:52,820 - stpipe.Spec3Pipeline.outlier_detection - INFO - New pixels flagged as outliers: 0 (0.00%) 2022-10-06 05:08:54,156 - stpipe.Spec3Pipeline.outlier_detection - INFO - New pixels flagged as outliers: 0 (0.00%) 2022-10-06 05:08:54,728 - stpipe.Spec3Pipeline.outlier_detection - INFO - New pixels flagged as outliers: 0 (0.00%) 2022-10-06 05:08:55,795 - stpipe.Spec3Pipeline.outlier_detection - INFO - Saved model in jw00626-o030_s00000_nirspec_f170lp-g235m_crf.fits 2022-10-06 05:08:55,795 - stpipe.Spec3Pipeline.outlier_detection - INFO - Step outlier_detection done 2022-10-06 05:08:56,551 - stpipe.Spec3Pipeline.resample_spec - INFO - Step resample_spec running with args (<SourceModelContainer>,). 2022-10-06 05:08:56,553 - stpipe.Spec3Pipeline.resample_spec - INFO - Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True} 2022-10-06 05:08:56,730 - stpipe.Spec3Pipeline.resample_spec - INFO - No DRIZPARS reffile 2022-10-06 05:08:56,731 - stpipe.Spec3Pipeline.resample_spec - INFO - using: pixfrac=1.0 2022-10-06 05:08:56,732 - stpipe.Spec3Pipeline.resample_spec - INFO - using: kernel='square' 2022-10-06 05:08:56,732 - stpipe.Spec3Pipeline.resample_spec - INFO - using: fillval='INDEF' 2022-10-06 05:08:56,732 - stpipe.Spec3Pipeline.resample_spec - INFO - using: wht_type='ivm' 2022-10-06 05:08:56,732 - stpipe.Spec3Pipeline.resample_spec - INFO - using: pscale_ratio=1.0 2022-10-06 05:08:57,122 - stpipe.Spec3Pipeline.resample_spec - INFO - Driz parameter kernal: square 2022-10-06 05:08:57,122 - stpipe.Spec3Pipeline.resample_spec - INFO - Driz parameter pixfrac: 1.0 2022-10-06 05:08:57,122 - stpipe.Spec3Pipeline.resample_spec - INFO - Driz parameter fillval: INDEF 2022-10-06 05:08:57,122 - stpipe.Spec3Pipeline.resample_spec - INFO - Driz parameter weight_type: ivm 2022-10-06 05:08:57,303 - stpipe.Spec3Pipeline.resample_spec - INFO - Blending metadata for None 2022-10-06 05:08:58,267 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling science data 2022-10-06 05:08:58,313 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (18, 1331) --> (22, 1334) 2022-10-06 05:08:58,358 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (18, 1332) --> (22, 1334) 2022-10-06 05:08:58,404 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (18, 1332) --> (22, 1334) 2022-10-06 05:08:58,406 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling var_rnoise 2022-10-06 05:08:58,448 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (18, 1331) --> (22, 1334) 2022-10-06 05:08:58,494 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (18, 1332) --> (22, 1334) 2022-10-06 05:08:58,539 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (18, 1332) --> (22, 1334) 2022-10-06 05:08:58,541 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling var_poisson 2022-10-06 05:08:58,583 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (18, 1331) --> (22, 1334) 2022-10-06 05:08:58,628 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (18, 1332) --> (22, 1334) 2022-10-06 05:08:58,671 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (18, 1332) --> (22, 1334) 2022-10-06 05:08:58,674 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling var_flat 2022-10-06 05:08:58,719 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (18, 1331) --> (22, 1334) 2022-10-06 05:08:58,763 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (18, 1332) --> (22, 1334) 2022-10-06 05:08:58,807 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (18, 1332) --> (22, 1334) 2022-10-06 05:08:58,851 - stpipe.Spec3Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 98.833506544 -66.805534899 98.873720968 -66.805534899 98.873720968 -66.734304492 98.833506544 -66.734304492 2022-10-06 05:08:59,472 - stpipe.Spec3Pipeline.resample_spec - INFO - Saved model in jw00626-o030_s00000_nirspec_f170lp-g235m_s2d.fits 2022-10-06 05:08:59,472 - stpipe.Spec3Pipeline.resample_spec - INFO - Step resample_spec done 2022-10-06 05:09:00,284 - stpipe.Spec3Pipeline.extract_1d - INFO - Step extract_1d running with args (<SlitModel(22, 1334) from jw00626-o030_s00000_nirspec_f170lp-g235m_s2d.fits>,). 2022-10-06 05:09:00,285 - stpipe.Spec3Pipeline.extract_1d - INFO - Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None} 2022-10-06 05:09:00,554 - stpipe.Spec3Pipeline.extract_1d - INFO - Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json 2022-10-06 05:09:00,682 - stpipe.Spec3Pipeline.extract_1d - INFO - Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits 2022-10-06 05:09:00,724 - stpipe.Spec3Pipeline.extract_1d - INFO - Turning on source position correction for exp_type = NRS_MSASPEC 2022-10-06 05:09:00,724 - stpipe.Spec3Pipeline.extract_1d - INFO - Processing spectral order -1 2022-10-06 05:09:00,724 - stpipe.Spec3Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2022-10-06 05:09:00,745 - stpipe.Spec3Pipeline.extract_1d - INFO - Using extraction limits: xstart=0, xstop=1333, ystart=7.0, ystop=14.0 2022-10-06 05:09:01,077 - stpipe.Spec3Pipeline.extract_1d - INFO - Saved model in jw00626-o030_s00000_nirspec_f170lp-g235m_x1d.fits 2022-10-06 05:09:01,078 - stpipe.Spec3Pipeline.extract_1d - INFO - Step extract_1d done 2022-10-06 05:09:02,085 - stpipe.Spec3Pipeline - INFO - Saved model in jw00626-o030_s02315_nirspec_f170lp-g235m_cal.fits 2022-10-06 05:09:02,792 - stpipe.Spec3Pipeline.outlier_detection - INFO - Step outlier_detection running with args (<SourceModelContainer>,). 2022-10-06 05:09:02,793 - stpipe.Spec3Pipeline.outlier_detection - INFO - Step outlier_detection parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'crf', 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'weight_type': 'ivm', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'nlow': 0, 'nhigh': 0, 'maskpt': 0.7, 'grow': 1, 'snr': '5.0 4.0', 'scale': '1.2 0.7', 'backg': 0.0, 'save_intermediate_results': False, 'resample_data': True, 'good_bits': '~DO_NOT_USE', 'scale_detection': False, 'allowed_memory': None, 'in_memory': False} 2022-10-06 05:09:02,799 - stpipe.Spec3Pipeline.outlier_detection - INFO - Performing outlier detection on 3 inputs 2022-10-06 05:09:03,295 - stpipe.Spec3Pipeline.outlier_detection - INFO - Driz parameter kernal: square 2022-10-06 05:09:03,295 - stpipe.Spec3Pipeline.outlier_detection - INFO - Driz parameter pixfrac: 1.0 2022-10-06 05:09:03,296 - stpipe.Spec3Pipeline.outlier_detection - INFO - Driz parameter fillval: INDEF 2022-10-06 05:09:03,296 - stpipe.Spec3Pipeline.outlier_detection - INFO - Driz parameter weight_type: ivm 2022-10-06 05:09:03,788 - stpipe.Spec3Pipeline.outlier_detection - INFO - 1 exposures to drizzle together 2022-10-06 05:09:04,017 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (28, 1433) --> (28, 1435) 2022-10-06 05:09:04,316 - stpipe.Spec3Pipeline.outlier_detection - INFO - Exposure jw00626030001_02103_00001_nrs1_outlier_i2d.fits saved to file 2022-10-06 05:09:04,319 - stpipe.Spec3Pipeline.outlier_detection - INFO - 1 exposures to drizzle together 2022-10-06 05:09:04,555 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (28, 1433) --> (28, 1435) 2022-10-06 05:09:04,865 - stpipe.Spec3Pipeline.outlier_detection - INFO - Exposure jw00626030001_02103_00002_nrs1_outlier_i2d.fits saved to file 2022-10-06 05:09:04,868 - stpipe.Spec3Pipeline.outlier_detection - INFO - 1 exposures to drizzle together 2022-10-06 05:09:05,098 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (28, 1433) --> (28, 1435) 2022-10-06 05:09:05,387 - stpipe.Spec3Pipeline.outlier_detection - INFO - Exposure jw00626030001_02103_00003_nrs1_outlier_i2d.fits saved to file 2022-10-06 05:09:08,575 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting median... 2022-10-06 05:09:08,901 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (28, 1433) <-- (28, 1435) 2022-10-06 05:09:10,449 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (28, 1433) <-- (28, 1435) 2022-10-06 05:09:11,251 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (28, 1433) <-- (28, 1435) 2022-10-06 05:09:11,667 - stpipe.Spec3Pipeline.outlier_detection - INFO - Flagging outliers 2022-10-06 05:09:12,214 - stpipe.Spec3Pipeline.outlier_detection - INFO - New pixels flagged as outliers: 0 (0.00%) 2022-10-06 05:09:13,601 - stpipe.Spec3Pipeline.outlier_detection - INFO - New pixels flagged as outliers: 0 (0.00%) 2022-10-06 05:09:14,146 - stpipe.Spec3Pipeline.outlier_detection - INFO - New pixels flagged as outliers: 0 (0.00%) 2022-10-06 05:09:15,233 - stpipe.Spec3Pipeline.outlier_detection - INFO - Saved model in jw00626-o030_s02315_nirspec_f170lp-g235m_crf.fits 2022-10-06 05:09:15,233 - stpipe.Spec3Pipeline.outlier_detection - INFO - Step outlier_detection done 2022-10-06 05:09:15,999 - stpipe.Spec3Pipeline.resample_spec - INFO - Step resample_spec running with args (<SourceModelContainer>,). 2022-10-06 05:09:16,000 - stpipe.Spec3Pipeline.resample_spec - INFO - Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True} 2022-10-06 05:09:16,169 - stpipe.Spec3Pipeline.resample_spec - INFO - No DRIZPARS reffile 2022-10-06 05:09:16,170 - stpipe.Spec3Pipeline.resample_spec - INFO - using: pixfrac=1.0 2022-10-06 05:09:16,170 - stpipe.Spec3Pipeline.resample_spec - INFO - using: kernel='square' 2022-10-06 05:09:16,170 - stpipe.Spec3Pipeline.resample_spec - INFO - using: fillval='INDEF' 2022-10-06 05:09:16,171 - stpipe.Spec3Pipeline.resample_spec - INFO - using: wht_type='ivm' 2022-10-06 05:09:16,171 - stpipe.Spec3Pipeline.resample_spec - INFO - using: pscale_ratio=1.0 2022-10-06 05:09:16,631 - stpipe.Spec3Pipeline.resample_spec - INFO - Driz parameter kernal: square 2022-10-06 05:09:16,632 - stpipe.Spec3Pipeline.resample_spec - INFO - Driz parameter pixfrac: 1.0 2022-10-06 05:09:16,632 - stpipe.Spec3Pipeline.resample_spec - INFO - Driz parameter fillval: INDEF 2022-10-06 05:09:16,632 - stpipe.Spec3Pipeline.resample_spec - INFO - Driz parameter weight_type: ivm 2022-10-06 05:09:16,810 - stpipe.Spec3Pipeline.resample_spec - INFO - Blending metadata for None 2022-10-06 05:09:17,774 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling science data 2022-10-06 05:09:17,843 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (28, 1433) --> (28, 1435) 2022-10-06 05:09:17,912 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (28, 1433) --> (28, 1435) 2022-10-06 05:09:17,981 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (28, 1433) --> (28, 1435) 2022-10-06 05:09:17,985 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling var_rnoise 2022-10-06 05:09:18,049 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (28, 1433) --> (28, 1435) 2022-10-06 05:09:18,115 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (28, 1433) --> (28, 1435) 2022-10-06 05:09:18,185 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (28, 1433) --> (28, 1435) 2022-10-06 05:09:18,191 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling var_poisson 2022-10-06 05:09:18,253 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (28, 1433) --> (28, 1435) 2022-10-06 05:09:18,322 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (28, 1433) --> (28, 1435) 2022-10-06 05:09:18,392 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (28, 1433) --> (28, 1435) 2022-10-06 05:09:18,398 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling var_flat 2022-10-06 05:09:18,460 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (28, 1433) --> (28, 1435) 2022-10-06 05:09:18,530 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (28, 1433) --> (28, 1435) 2022-10-06 05:09:18,599 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (28, 1433) --> (28, 1435) 2022-10-06 05:09:18,647 - stpipe.Spec3Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 98.880472247 -66.807347157 98.924169504 -66.807347157 98.924169504 -66.730772757 98.880472247 -66.730772757 2022-10-06 05:09:19,266 - stpipe.Spec3Pipeline.resample_spec - INFO - Saved model in jw00626-o030_s02315_nirspec_f170lp-g235m_s2d.fits 2022-10-06 05:09:19,267 - stpipe.Spec3Pipeline.resample_spec - INFO - Step resample_spec done 2022-10-06 05:09:20,103 - stpipe.Spec3Pipeline.extract_1d - INFO - Step extract_1d running with args (<SlitModel(28, 1435) from jw00626-o030_s02315_nirspec_f170lp-g235m_s2d.fits>,). 2022-10-06 05:09:20,105 - stpipe.Spec3Pipeline.extract_1d - INFO - Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None} 2022-10-06 05:09:20,367 - stpipe.Spec3Pipeline.extract_1d - INFO - Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json 2022-10-06 05:09:20,495 - stpipe.Spec3Pipeline.extract_1d - INFO - Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits 2022-10-06 05:09:20,536 - stpipe.Spec3Pipeline.extract_1d - INFO - Turning on source position correction for exp_type = NRS_MSASPEC 2022-10-06 05:09:20,536 - stpipe.Spec3Pipeline.extract_1d - INFO - Processing spectral order -1 2022-10-06 05:09:20,586 - stpipe.Spec3Pipeline.extract_1d - WARNING - WCS implies the target is at -85124039678643631290596759093731259318272.00, which is outside the bounding box, 2022-10-06 05:09:20,586 - stpipe.Spec3Pipeline.extract_1d - WARNING - so we can't get spectrum location using the WCS 2022-10-06 05:09:20,587 - stpipe.Spec3Pipeline.extract_1d - INFO - Using extraction limits: xstart=0, xstop=1434, ystart=10.0, ystop=17.0 2022-10-06 05:09:20,826 - stpipe.Spec3Pipeline.extract_1d - INFO - Applying Aperture correction. 2022-10-06 05:09:23,087 - stpipe.Spec3Pipeline.extract_1d - INFO - Saved model in jw00626-o030_s02315_nirspec_f170lp-g235m_x1d.fits 2022-10-06 05:09:23,087 - stpipe.Spec3Pipeline.extract_1d - INFO - Step extract_1d done 2022-10-06 05:09:23,087 - stpipe.Spec3Pipeline - INFO - Ending calwebb_spec3 2022-10-06 05:09:23,088 - stpipe.Spec3Pipeline - INFO - Step Spec3Pipeline done -------------------------------Captured log setup------------------------------- INFO stpipe.Spec3Pipeline:step.py:366 Spec3Pipeline instance created. INFO stpipe.Spec3Pipeline.assign_mtwcs:step.py:366 AssignMTWcsStep instance created. INFO stpipe.Spec3Pipeline.master_background:step.py:366 MasterBackgroundStep instance created. INFO stpipe.Spec3Pipeline.mrs_imatch:step.py:366 MRSIMatchStep instance created. INFO stpipe.Spec3Pipeline.outlier_detection:step.py:366 OutlierDetectionStep instance created. INFO stpipe.Spec3Pipeline.resample_spec:step.py:366 ResampleSpecStep instance created. INFO stpipe.Spec3Pipeline.cube_build:step.py:366 CubeBuildStep instance created. INFO stpipe.Spec3Pipeline.extract_1d:step.py:366 Extract1dStep instance created. INFO stpipe.Spec3Pipeline.photom:step.py:366 PhotomStep instance created. INFO stpipe.Spec3Pipeline.combine_1d:step.py:366 Combine1dStep instance created. INFO stpipe.Spec3Pipeline:step.py:430 Step Spec3Pipeline running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_20191210t193826_spec3_001_asn.json',). INFO stpipe.Spec3Pipeline:step.py:434 Step Spec3Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'steps': {'assign_mtwcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'assign_mtwcs', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0'}, 'master_background': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'user_background': None, 'save_background': False, 'force_subtract': False}, 'mrs_imatch': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'bkg_degree': 1, 'subtract': False}, 'outlier_detection': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'weight_type': 'ivm', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'nlow': 0, 'nhigh': 0, 'maskpt': 0.7, 'grow': 1, 'snr': '5.0 4.0', 'scale': '1.2 0.7', 'backg': 0.0, 'save_intermediate_results': False, 'resample_data': True, 'good_bits': '~DO_NOT_USE', 'scale_detection': False, 'allowed_memory': None, 'in_memory': False}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'drizzle', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'inverse': False, 'source_type': None}, 'combine_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'exptime_key': 'exposure_time'}}} INFO stpipe.Spec3Pipeline:pipeline.py:358 Prefetching reference files for dataset: 'jw00626030001_02103_00001_nrs2_cal.fits' reftypes = ['apcorr', 'area', 'cubepar', 'drizpars', 'extract1d', 'photom', 'speckernel', 'specprofile', 'spectrace', 'wavemap'] INFO stpipe.Spec3Pipeline:pipeline.py:366 Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits'. INFO stpipe.Spec3Pipeline:pipeline.py:366 Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits'. INFO stpipe.Spec3Pipeline:pipeline.py:366 Prefetch for CUBEPAR reference file is 'N/A'. INFO stpipe.Spec3Pipeline:pipeline.py:366 Prefetch for DRIZPARS reference file is 'N/A'. INFO stpipe.Spec3Pipeline:pipeline.py:366 Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json'. INFO stpipe.Spec3Pipeline:pipeline.py:366 Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits'. INFO stpipe.Spec3Pipeline:pipeline.py:366 Prefetch for SPECKERNEL reference file is 'N/A'. INFO stpipe.Spec3Pipeline:pipeline.py:366 Prefetch for SPECPROFILE reference file is 'N/A'. INFO stpipe.Spec3Pipeline:pipeline.py:366 Prefetch for SPECTRACE reference file is 'N/A'. INFO stpipe.Spec3Pipeline:pipeline.py:366 Prefetch for WAVEMAP reference file is 'N/A'. INFO stpipe.Spec3Pipeline:calwebb_spec3.py:76 Starting calwebb_spec3 ... INFO stpipe.Spec3Pipeline:calwebb_spec3.py:160 Convert from exposure-based to source-based data. INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw00626030001_02103_00001_nrs2_cal.fits INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw00626030001_02103_00001_nrs2_cal.fits DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 443 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 443 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 482 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 482 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 227 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 227 INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw00626030001_02103_00001_nrs1_cal.fits INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw00626030001_02103_00001_nrs1_cal.fits DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 443 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 443 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 482 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 482 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 227 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 227 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 279 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 279 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 0 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 0 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 2315 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 2315 INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw00626030001_02103_00002_nrs2_cal.fits INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw00626030001_02103_00002_nrs2_cal.fits DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 443 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 443 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 482 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 482 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 227 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 227 INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw00626030001_02103_00002_nrs1_cal.fits INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw00626030001_02103_00002_nrs1_cal.fits DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 443 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 443 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 482 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 482 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 227 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 227 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 279 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 279 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 0 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 0 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 2315 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 2315 INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw00626030001_02103_00003_nrs1_cal.fits INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw00626030001_02103_00003_nrs1_cal.fits DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 443 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 443 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 482 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 482 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 227 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 227 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 279 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 279 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 0 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 0 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 2315 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 2315 INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw00626030001_02103_00003_nrs2_cal.fits INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw00626030001_02103_00003_nrs2_cal.fits DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 443 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 443 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 482 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 482 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 227 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 227 INFO stpipe.Spec3Pipeline:step.py:1016 Saved model in jw00626-o030_s00443_nirspec_f170lp-g235m_cal.fits INFO stpipe.Spec3Pipeline.outlier_detection:step.py:430 Step outlier_detection running with args (<SourceModelContainer>,). INFO stpipe.Spec3Pipeline.outlier_detection:step.py:434 Step outlier_detection parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'crf', 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'weight_type': 'ivm', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'nlow': 0, 'nhigh': 0, 'maskpt': 0.7, 'grow': 1, 'snr': '5.0 4.0', 'scale': '1.2 0.7', 'backg': 0.0, 'save_intermediate_results': False, 'resample_data': True, 'good_bits': '~DO_NOT_USE', 'scale_detection': False, 'allowed_memory': None, 'in_memory': False} INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection_step.py:194 Performing outlier detection on 6 inputs DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection_step.py:158 Using OutlierDetectionSpec class for outlier_detection DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:177 Defined output product suffix as: _outlier_s2d.fits DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:177 Defined output product suffix as: _outlier_s2d.fits INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:162 2 exposures to drizzle together INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:162 2 exposures to drizzle together DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (27, 1300) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (27, 1300) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 1072) --> (27, 1300) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 1072) --> (27, 1300) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (27, 1300) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (27, 1300) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 227) --> (27, 1300) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 227) --> (27, 1300) INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:184 Exposure jw00626030001_02103_00001_nrs2_outlier_i2d.fits saved to file INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:184 Exposure jw00626030001_02103_00001_nrs2_outlier_i2d.fits saved to file INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:162 2 exposures to drizzle together INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:162 2 exposures to drizzle together DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (27, 1300) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (27, 1300) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 1072) --> (27, 1300) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 1072) --> (27, 1300) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (27, 1300) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (27, 1300) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 227) --> (27, 1300) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 227) --> (27, 1300) INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:184 Exposure jw00626030001_02103_00002_nrs2_outlier_i2d.fits saved to file INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:184 Exposure jw00626030001_02103_00002_nrs2_outlier_i2d.fits saved to file INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:162 2 exposures to drizzle together INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:162 2 exposures to drizzle together DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (27, 1300) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (27, 1300) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 227) --> (27, 1300) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 227) --> (27, 1300) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (27, 1300) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (27, 1300) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 1072) --> (27, 1300) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 1072) --> (27, 1300) INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:184 Exposure jw00626030001_02103_00003_nrs1_outlier_i2d.fits saved to file INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:184 Exposure jw00626030001_02103_00003_nrs1_outlier_i2d.fits saved to file DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:292 Percentage of pixels with low weight: 76.00569800569801 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:292 Percentage of pixels with low weight: 76.00569800569801 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:292 Percentage of pixels with low weight: 76.14245014245014 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:292 Percentage of pixels with low weight: 76.14245014245014 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:292 Percentage of pixels with low weight: 75.75783475783476 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:292 Percentage of pixels with low weight: 75.75783475783476 INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:322 Blotting median... INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:322 Blotting median... DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (27, 1072) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (27, 1072) <-- (27, 1300) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (27, 1072) <-- (27, 1300) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (27, 227) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (27, 227) <-- (27, 1300) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (27, 227) <-- (27, 1300) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (27, 1072) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (27, 1072) <-- (27, 1300) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (27, 1072) <-- (27, 1300) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (27, 227) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (27, 227) <-- (27, 1300) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (27, 227) <-- (27, 1300) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (27, 227) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (27, 227) <-- (27, 1300) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (27, 227) <-- (27, 1300) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (27, 1072) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (27, 1072) <-- (27, 1300) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (27, 1072) <-- (27, 1300) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:372 Flagging outliers INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:372 Flagging outliers INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:step.py:1016 Saved model in jw00626-o030_s00443_nirspec_f170lp-g235m_crf.fits INFO stpipe.Spec3Pipeline.outlier_detection:step.py:546 Step outlier_detection done INFO stpipe.Spec3Pipeline.resample_spec:step.py:430 Step resample_spec running with args (<SourceModelContainer>,). INFO stpipe.Spec3Pipeline.resample_spec:step.py:434 Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True} INFO stpipe.Spec3Pipeline.resample_spec:resample_spec_step.py:60 No DRIZPARS reffile INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: pixfrac=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: pixfrac=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: kernel='square' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: kernel='square' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: fillval='INDEF' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: fillval='INDEF' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: wht_type='ivm' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: wht_type='ivm' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: pscale_ratio=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: pscale_ratio=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec3Pipeline.resample_spec:resample.py:136 Blending metadata for None INFO stpipe.Spec3Pipeline.resample_spec:resample.py:136 Blending metadata for None INFO stpipe.Spec3Pipeline.resample_spec:resample.py:210 Resampling science data INFO stpipe.Spec3Pipeline.resample_spec:resample.py:210 Resampling science data DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (27, 1300) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 1072) --> (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 1072) --> (27, 1300) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (27, 1300) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 227) --> (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 227) --> (27, 1300) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (27, 1300) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 1072) --> (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 1072) --> (27, 1300) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (27, 1300) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 227) --> (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 227) --> (27, 1300) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (27, 1300) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 227) --> (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 227) --> (27, 1300) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (27, 1300) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 1072) --> (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 1072) --> (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:263 Resampling var_rnoise INFO stpipe.Spec3Pipeline.resample_spec:resample.py:263 Resampling var_rnoise DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1300) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 1072) --> (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 1072) --> (27, 1300) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1300) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 227) --> (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 227) --> (27, 1300) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1300) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 1072) --> (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 1072) --> (27, 1300) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1300) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 227) --> (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 227) --> (27, 1300) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1300) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 227) --> (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 227) --> (27, 1300) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1300) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 1072) --> (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 1072) --> (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:263 Resampling var_poisson INFO stpipe.Spec3Pipeline.resample_spec:resample.py:263 Resampling var_poisson DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1300) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 1072) --> (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 1072) --> (27, 1300) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1300) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 227) --> (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 227) --> (27, 1300) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1300) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 1072) --> (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 1072) --> (27, 1300) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1300) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 227) --> (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 227) --> (27, 1300) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1300) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 227) --> (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 227) --> (27, 1300) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1300) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 1072) --> (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 1072) --> (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:263 Resampling var_flat INFO stpipe.Spec3Pipeline.resample_spec:resample.py:263 Resampling var_flat DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1300) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 1072) --> (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 1072) --> (27, 1300) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1300) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 227) --> (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 227) --> (27, 1300) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1300) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 1072) --> (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 1072) --> (27, 1300) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1300) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 227) --> (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 227) --> (27, 1300) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1300) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 227) --> (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 227) --> (27, 1300) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1300) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 1072) --> (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 1072) --> (27, 1300) INFO stpipe.Spec3Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 98.773526785 -66.832161955 98.814160709 -66.832161955 98.814160709 -66.763084397 98.773526785 -66.763084397 INFO stpipe.Spec3Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 98.773526785 -66.832161955 98.814160709 -66.832161955 98.814160709 -66.763084397 98.773526785 -66.763084397 INFO stpipe.Spec3Pipeline.resample_spec:step.py:1016 Saved model in jw00626-o030_s00443_nirspec_f170lp-g235m_s2d.fits INFO stpipe.Spec3Pipeline.resample_spec:step.py:546 Step resample_spec done INFO stpipe.Spec3Pipeline.extract_1d:step.py:430 Step extract_1d running with args (<SlitModel(27, 1300) from jw00626-o030_s00443_nirspec_f170lp-g235m_s2d.fits>,). INFO stpipe.Spec3Pipeline.extract_1d:step.py:434 Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None} DEBUG stpipe.Spec3Pipeline.extract_1d:extract_1d_step.py:167 Input is a SlitModel INFO stpipe.Spec3Pipeline.extract_1d:extract_1d_step.py:389 Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json INFO stpipe.Spec3Pipeline.extract_1d:extract_1d_step.py:397 Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits INFO stpipe.Spec3Pipeline.extract_1d:extract.py:2780 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Spec3Pipeline.extract_1d:extract.py:2780 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Spec3Pipeline.extract_1d:extract.py:2917 Processing spectral order -1 INFO stpipe.Spec3Pipeline.extract_1d:extract.py:2917 Processing spectral order -1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:454 use_source_posn = True DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:454 use_source_posn = True WARNING stpipe.Spec3Pipeline.extract_1d:extract.py:1449 WCS implies the target is at -84305406651168783656906520976933192204288.00, which is outside the bounding box, WARNING stpipe.Spec3Pipeline.extract_1d:extract.py:1449 WCS implies the target is at -84305406651168783656906520976933192204288.00, which is outside the bounding box, WARNING stpipe.Spec3Pipeline.extract_1d:extract.py:1450 so we can't get spectrum location using the WCS WARNING stpipe.Spec3Pipeline.extract_1d:extract.py:1450 so we can't get spectrum location using the WCS DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1301 Spectrum location from WCS used column/row 649 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1301 Spectrum location from WCS used column/row 649 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[9.0], [17.0]] DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[9.0], [17.0]] INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1299, ystart=9.5, ystop=16.5 INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1299, ystart=9.5, ystop=16.5 INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3770 Applying Aperture correction. INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3770 Applying Aperture correction. DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:2952 Not copying from the INT_TIMES table because this is not a TSO exposure. DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:2952 Not copying from the INT_TIMES table because this is not a TSO exposure. INFO stpipe.Spec3Pipeline.extract_1d:step.py:1016 Saved model in jw00626-o030_s00443_nirspec_f170lp-g235m_x1d.fits INFO stpipe.Spec3Pipeline.extract_1d:step.py:546 Step extract_1d done INFO stpipe.Spec3Pipeline:step.py:1016 Saved model in jw00626-o030_s00482_nirspec_f170lp-g235m_cal.fits INFO stpipe.Spec3Pipeline.outlier_detection:step.py:430 Step outlier_detection running with args (<SourceModelContainer>,). INFO stpipe.Spec3Pipeline.outlier_detection:step.py:434 Step outlier_detection parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'crf', 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'weight_type': 'ivm', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'nlow': 0, 'nhigh': 0, 'maskpt': 0.7, 'grow': 1, 'snr': '5.0 4.0', 'scale': '1.2 0.7', 'backg': 0.0, 'save_intermediate_results': False, 'resample_data': True, 'good_bits': '~DO_NOT_USE', 'scale_detection': False, 'allowed_memory': None, 'in_memory': False} INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection_step.py:194 Performing outlier detection on 6 inputs DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection_step.py:158 Using OutlierDetectionSpec class for outlier_detection DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:177 Defined output product suffix as: _outlier_s2d.fits DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:177 Defined output product suffix as: _outlier_s2d.fits INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:162 2 exposures to drizzle together INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:162 2 exposures to drizzle together DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (28, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (28, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (25, 1022) --> (28, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (25, 1022) --> (28, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (28, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (28, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (25, 271) --> (28, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (25, 271) --> (28, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:184 Exposure jw00626030001_02103_00001_nrs2_outlier_i2d.fits saved to file INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:184 Exposure jw00626030001_02103_00001_nrs2_outlier_i2d.fits saved to file INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:162 2 exposures to drizzle together INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:162 2 exposures to drizzle together DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (28, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (28, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (25, 1022) --> (28, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (25, 1022) --> (28, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (28, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (28, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (25, 271) --> (28, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (25, 271) --> (28, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:184 Exposure jw00626030001_02103_00002_nrs2_outlier_i2d.fits saved to file INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:184 Exposure jw00626030001_02103_00002_nrs2_outlier_i2d.fits saved to file INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:162 2 exposures to drizzle together INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:162 2 exposures to drizzle together DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (28, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (28, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (25, 271) --> (28, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (25, 271) --> (28, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (28, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (28, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (25, 1022) --> (28, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (25, 1022) --> (28, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:184 Exposure jw00626030001_02103_00003_nrs1_outlier_i2d.fits saved to file INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:184 Exposure jw00626030001_02103_00003_nrs1_outlier_i2d.fits saved to file DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:292 Percentage of pixels with low weight: 96.71814671814671 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:292 Percentage of pixels with low weight: 96.71814671814671 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:292 Percentage of pixels with low weight: 96.72642029784888 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:292 Percentage of pixels with low weight: 96.72642029784888 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:292 Percentage of pixels with low weight: 96.73469387755102 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:292 Percentage of pixels with low weight: 96.73469387755102 INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:322 Blotting median... INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:322 Blotting median... DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (25, 1022) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (25, 1022) <-- (28, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (25, 1022) <-- (28, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (25, 271) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (25, 271) <-- (28, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (25, 271) <-- (28, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (25, 1022) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (25, 1022) <-- (28, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (25, 1022) <-- (28, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (25, 271) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (25, 271) <-- (28, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (25, 271) <-- (28, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (25, 271) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (25, 271) <-- (28, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (25, 271) <-- (28, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (25, 1022) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (25, 1022) <-- (28, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (25, 1022) <-- (28, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:372 Flagging outliers INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:372 Flagging outliers INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:step.py:1016 Saved model in jw00626-o030_s00482_nirspec_f170lp-g235m_crf.fits INFO stpipe.Spec3Pipeline.outlier_detection:step.py:546 Step outlier_detection done INFO stpipe.Spec3Pipeline.resample_spec:step.py:430 Step resample_spec running with args (<SourceModelContainer>,). INFO stpipe.Spec3Pipeline.resample_spec:step.py:434 Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True} INFO stpipe.Spec3Pipeline.resample_spec:resample_spec_step.py:60 No DRIZPARS reffile INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: pixfrac=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: pixfrac=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: kernel='square' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: kernel='square' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: fillval='INDEF' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: fillval='INDEF' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: wht_type='ivm' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: wht_type='ivm' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: pscale_ratio=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: pscale_ratio=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec3Pipeline.resample_spec:resample.py:136 Blending metadata for None INFO stpipe.Spec3Pipeline.resample_spec:resample.py:136 Blending metadata for None INFO stpipe.Spec3Pipeline.resample_spec:resample.py:210 Resampling science data INFO stpipe.Spec3Pipeline.resample_spec:resample.py:210 Resampling science data DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (28, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (25, 1022) --> (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (25, 1022) --> (28, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (28, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (25, 271) --> (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (25, 271) --> (28, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (28, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (25, 1022) --> (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (25, 1022) --> (28, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (28, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (25, 271) --> (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (25, 271) --> (28, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (28, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (25, 271) --> (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (25, 271) --> (28, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (28, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (25, 1022) --> (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (25, 1022) --> (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:263 Resampling var_rnoise INFO stpipe.Spec3Pipeline.resample_spec:resample.py:263 Resampling var_rnoise DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (25, 1022) --> (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (25, 1022) --> (28, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (25, 271) --> (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (25, 271) --> (28, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (25, 1022) --> (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (25, 1022) --> (28, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (25, 271) --> (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (25, 271) --> (28, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (25, 271) --> (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (25, 271) --> (28, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (25, 1022) --> (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (25, 1022) --> (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:263 Resampling var_poisson INFO stpipe.Spec3Pipeline.resample_spec:resample.py:263 Resampling var_poisson DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (25, 1022) --> (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (25, 1022) --> (28, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (25, 271) --> (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (25, 271) --> (28, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (25, 1022) --> (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (25, 1022) --> (28, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (25, 271) --> (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (25, 271) --> (28, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (25, 271) --> (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (25, 271) --> (28, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (25, 1022) --> (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (25, 1022) --> (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:263 Resampling var_flat INFO stpipe.Spec3Pipeline.resample_spec:resample.py:263 Resampling var_flat DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (25, 1022) --> (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (25, 1022) --> (28, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (25, 271) --> (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (25, 271) --> (28, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (25, 1022) --> (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (25, 1022) --> (28, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (25, 271) --> (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (25, 271) --> (28, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (25, 271) --> (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (25, 271) --> (28, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (25, 1022) --> (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (25, 1022) --> (28, 1295) INFO stpipe.Spec3Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 98.861764360 -66.840024665 98.901924259 -66.840024665 98.901924259 -66.771787767 98.861764360 -66.771787767 INFO stpipe.Spec3Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 98.861764360 -66.840024665 98.901924259 -66.840024665 98.901924259 -66.771787767 98.861764360 -66.771787767 INFO stpipe.Spec3Pipeline.resample_spec:step.py:1016 Saved model in jw00626-o030_s00482_nirspec_f170lp-g235m_s2d.fits INFO stpipe.Spec3Pipeline.resample_spec:step.py:546 Step resample_spec done INFO stpipe.Spec3Pipeline.extract_1d:step.py:430 Step extract_1d running with args (<SlitModel(28, 1295) from jw00626-o030_s00482_nirspec_f170lp-g235m_s2d.fits>,). INFO stpipe.Spec3Pipeline.extract_1d:step.py:434 Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None} DEBUG stpipe.Spec3Pipeline.extract_1d:extract_1d_step.py:167 Input is a SlitModel INFO stpipe.Spec3Pipeline.extract_1d:extract_1d_step.py:389 Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json INFO stpipe.Spec3Pipeline.extract_1d:extract_1d_step.py:397 Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits INFO stpipe.Spec3Pipeline.extract_1d:extract.py:2780 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Spec3Pipeline.extract_1d:extract.py:2780 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Spec3Pipeline.extract_1d:extract.py:2917 Processing spectral order -1 INFO stpipe.Spec3Pipeline.extract_1d:extract.py:2917 Processing spectral order -1 INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[9.5], [17.5]] DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[9.5], [17.5]] INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1294, ystart=10.0, ystop=17.0 INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1294, ystart=10.0, ystop=17.0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:2952 Not copying from the INT_TIMES table because this is not a TSO exposure. DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:2952 Not copying from the INT_TIMES table because this is not a TSO exposure. INFO stpipe.Spec3Pipeline.extract_1d:step.py:1016 Saved model in jw00626-o030_s00482_nirspec_f170lp-g235m_x1d.fits INFO stpipe.Spec3Pipeline.extract_1d:step.py:546 Step extract_1d done INFO stpipe.Spec3Pipeline:step.py:1016 Saved model in jw00626-o030_s00227_nirspec_f170lp-g235m_cal.fits INFO stpipe.Spec3Pipeline.outlier_detection:step.py:430 Step outlier_detection running with args (<SourceModelContainer>,). INFO stpipe.Spec3Pipeline.outlier_detection:step.py:434 Step outlier_detection parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'crf', 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'weight_type': 'ivm', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'nlow': 0, 'nhigh': 0, 'maskpt': 0.7, 'grow': 1, 'snr': '5.0 4.0', 'scale': '1.2 0.7', 'backg': 0.0, 'save_intermediate_results': False, 'resample_data': True, 'good_bits': '~DO_NOT_USE', 'scale_detection': False, 'allowed_memory': None, 'in_memory': False} INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection_step.py:194 Performing outlier detection on 6 inputs DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection_step.py:158 Using OutlierDetectionSpec class for outlier_detection DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:177 Defined output product suffix as: _outlier_s2d.fits DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:177 Defined output product suffix as: _outlier_s2d.fits INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:162 2 exposures to drizzle together INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:162 2 exposures to drizzle together DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (27, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (27, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 155) --> (27, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 155) --> (27, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (27, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (27, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 1139) --> (27, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 1139) --> (27, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:184 Exposure jw00626030001_02103_00001_nrs2_outlier_i2d.fits saved to file INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:184 Exposure jw00626030001_02103_00001_nrs2_outlier_i2d.fits saved to file INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:162 2 exposures to drizzle together INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:162 2 exposures to drizzle together DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (27, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (27, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 155) --> (27, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 155) --> (27, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (27, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (27, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 1139) --> (27, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 1139) --> (27, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:184 Exposure jw00626030001_02103_00002_nrs2_outlier_i2d.fits saved to file INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:184 Exposure jw00626030001_02103_00002_nrs2_outlier_i2d.fits saved to file INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:162 2 exposures to drizzle together INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:162 2 exposures to drizzle together DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (27, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (27, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 1139) --> (27, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 1139) --> (27, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (27, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (27, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 155) --> (27, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 155) --> (27, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:184 Exposure jw00626030001_02103_00003_nrs1_outlier_i2d.fits saved to file INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:184 Exposure jw00626030001_02103_00003_nrs1_outlier_i2d.fits saved to file DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:292 Percentage of pixels with low weight: 93.72515372515372 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:292 Percentage of pixels with low weight: 93.72515372515372 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:292 Percentage of pixels with low weight: 93.82811382811383 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:292 Percentage of pixels with low weight: 93.82811382811383 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:292 Percentage of pixels with low weight: 93.74517374517374 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:292 Percentage of pixels with low weight: 93.74517374517374 INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:322 Blotting median... INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:322 Blotting median... DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (27, 155) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (27, 155) <-- (27, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (27, 155) <-- (27, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (27, 1139) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (27, 1139) <-- (27, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (27, 1139) <-- (27, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (27, 155) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (27, 155) <-- (27, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (27, 155) <-- (27, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (27, 1139) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (27, 1139) <-- (27, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (27, 1139) <-- (27, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (27, 1139) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (27, 1139) <-- (27, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (27, 1139) <-- (27, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (27, 155) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (27, 155) <-- (27, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (27, 155) <-- (27, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:372 Flagging outliers INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:372 Flagging outliers INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:step.py:1016 Saved model in jw00626-o030_s00227_nirspec_f170lp-g235m_crf.fits INFO stpipe.Spec3Pipeline.outlier_detection:step.py:546 Step outlier_detection done INFO stpipe.Spec3Pipeline.resample_spec:step.py:430 Step resample_spec running with args (<SourceModelContainer>,). INFO stpipe.Spec3Pipeline.resample_spec:step.py:434 Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True} INFO stpipe.Spec3Pipeline.resample_spec:resample_spec_step.py:60 No DRIZPARS reffile INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: pixfrac=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: pixfrac=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: kernel='square' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: kernel='square' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: fillval='INDEF' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: fillval='INDEF' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: wht_type='ivm' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: wht_type='ivm' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: pscale_ratio=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: pscale_ratio=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec3Pipeline.resample_spec:resample.py:136 Blending metadata for None INFO stpipe.Spec3Pipeline.resample_spec:resample.py:136 Blending metadata for None INFO stpipe.Spec3Pipeline.resample_spec:resample.py:210 Resampling science data INFO stpipe.Spec3Pipeline.resample_spec:resample.py:210 Resampling science data DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (27, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 155) --> (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 155) --> (27, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (27, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 1139) --> (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 1139) --> (27, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (27, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 155) --> (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 155) --> (27, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (27, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 1139) --> (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 1139) --> (27, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (27, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 1139) --> (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 1139) --> (27, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (27, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 155) --> (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 155) --> (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:263 Resampling var_rnoise INFO stpipe.Spec3Pipeline.resample_spec:resample.py:263 Resampling var_rnoise DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 155) --> (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 155) --> (27, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 1139) --> (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 1139) --> (27, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 155) --> (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 155) --> (27, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 1139) --> (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 1139) --> (27, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 1139) --> (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 1139) --> (27, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 155) --> (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 155) --> (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:263 Resampling var_poisson INFO stpipe.Spec3Pipeline.resample_spec:resample.py:263 Resampling var_poisson DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 155) --> (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 155) --> (27, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 1139) --> (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 1139) --> (27, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 155) --> (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 155) --> (27, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 1139) --> (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 1139) --> (27, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 1139) --> (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 1139) --> (27, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 155) --> (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 155) --> (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:263 Resampling var_flat INFO stpipe.Spec3Pipeline.resample_spec:resample.py:263 Resampling var_flat DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 155) --> (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 155) --> (27, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 1139) --> (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 1139) --> (27, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 155) --> (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 155) --> (27, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 1139) --> (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 1139) --> (27, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 1139) --> (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 1139) --> (27, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 155) --> (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (27, 155) --> (27, 1295) INFO stpipe.Spec3Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 98.793532015 -66.806995913 98.833322584 -66.806995913 98.833322584 -66.737739336 98.793532015 -66.737739336 INFO stpipe.Spec3Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 98.793532015 -66.806995913 98.833322584 -66.806995913 98.833322584 -66.737739336 98.793532015 -66.737739336 INFO stpipe.Spec3Pipeline.resample_spec:step.py:1016 Saved model in jw00626-o030_s00227_nirspec_f170lp-g235m_s2d.fits INFO stpipe.Spec3Pipeline.resample_spec:step.py:546 Step resample_spec done INFO stpipe.Spec3Pipeline.extract_1d:step.py:430 Step extract_1d running with args (<SlitModel(27, 1295) from jw00626-o030_s00227_nirspec_f170lp-g235m_s2d.fits>,). INFO stpipe.Spec3Pipeline.extract_1d:step.py:434 Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None} DEBUG stpipe.Spec3Pipeline.extract_1d:extract_1d_step.py:167 Input is a SlitModel INFO stpipe.Spec3Pipeline.extract_1d:extract_1d_step.py:389 Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json INFO stpipe.Spec3Pipeline.extract_1d:extract_1d_step.py:397 Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits INFO stpipe.Spec3Pipeline.extract_1d:extract.py:2780 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Spec3Pipeline.extract_1d:extract.py:2780 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Spec3Pipeline.extract_1d:extract.py:2917 Processing spectral order -1 INFO stpipe.Spec3Pipeline.extract_1d:extract.py:2917 Processing spectral order -1 INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[9.0], [17.0]] DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[9.0], [17.0]] INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1294, ystart=9.5, ystop=16.5 INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1294, ystart=9.5, ystop=16.5 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:2952 Not copying from the INT_TIMES table because this is not a TSO exposure. DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:2952 Not copying from the INT_TIMES table because this is not a TSO exposure. INFO stpipe.Spec3Pipeline.extract_1d:step.py:1016 Saved model in jw00626-o030_s00227_nirspec_f170lp-g235m_x1d.fits INFO stpipe.Spec3Pipeline.extract_1d:step.py:546 Step extract_1d done INFO stpipe.Spec3Pipeline:step.py:1016 Saved model in jw00626-o030_s00279_nirspec_f170lp-g235m_cal.fits INFO stpipe.Spec3Pipeline.outlier_detection:step.py:430 Step outlier_detection running with args (<SourceModelContainer>,). INFO stpipe.Spec3Pipeline.outlier_detection:step.py:434 Step outlier_detection parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'crf', 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'weight_type': 'ivm', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'nlow': 0, 'nhigh': 0, 'maskpt': 0.7, 'grow': 1, 'snr': '5.0 4.0', 'scale': '1.2 0.7', 'backg': 0.0, 'save_intermediate_results': False, 'resample_data': True, 'good_bits': '~DO_NOT_USE', 'scale_detection': False, 'allowed_memory': None, 'in_memory': False} INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection_step.py:194 Performing outlier detection on 3 inputs DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection_step.py:158 Using OutlierDetectionSpec class for outlier_detection DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:177 Defined output product suffix as: _outlier_s2d.fits DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:177 Defined output product suffix as: _outlier_s2d.fits INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:162 1 exposures to drizzle together INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:162 1 exposures to drizzle together DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (27, 1340) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (27, 1340) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (29, 1338) --> (27, 1340) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (29, 1338) --> (27, 1340) INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:184 Exposure jw00626030001_02103_00001_nrs1_outlier_i2d.fits saved to file INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:184 Exposure jw00626030001_02103_00001_nrs1_outlier_i2d.fits saved to file INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:162 1 exposures to drizzle together INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:162 1 exposures to drizzle together DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (27, 1340) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (27, 1340) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (29, 1338) --> (27, 1340) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (29, 1338) --> (27, 1340) INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:184 Exposure jw00626030001_02103_00002_nrs1_outlier_i2d.fits saved to file INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:184 Exposure jw00626030001_02103_00002_nrs1_outlier_i2d.fits saved to file INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:162 1 exposures to drizzle together INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:162 1 exposures to drizzle together DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (27, 1340) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (27, 1340) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (29, 1338) --> (27, 1340) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (29, 1338) --> (27, 1340) INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:184 Exposure jw00626030001_02103_00003_nrs1_outlier_i2d.fits saved to file INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:184 Exposure jw00626030001_02103_00003_nrs1_outlier_i2d.fits saved to file DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:292 Percentage of pixels with low weight: 56.76616915422885 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:292 Percentage of pixels with low weight: 56.76616915422885 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:292 Percentage of pixels with low weight: 57.76395798783859 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:292 Percentage of pixels with low weight: 57.76395798783859 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:292 Percentage of pixels with low weight: 57.70315091210614 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:292 Percentage of pixels with low weight: 57.70315091210614 INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:322 Blotting median... INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:322 Blotting median... DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (29, 1338) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (29, 1338) <-- (27, 1340) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (29, 1338) <-- (27, 1340) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (29, 1338) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (29, 1338) <-- (27, 1340) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (29, 1338) <-- (27, 1340) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (29, 1338) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (29, 1338) <-- (27, 1340) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (29, 1338) <-- (27, 1340) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:372 Flagging outliers INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:372 Flagging outliers INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 2 (0.01%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 2 (0.01%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 1 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 1 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:step.py:1016 Saved model in jw00626-o030_s00279_nirspec_f170lp-g235m_crf.fits INFO stpipe.Spec3Pipeline.outlier_detection:step.py:546 Step outlier_detection done INFO stpipe.Spec3Pipeline.resample_spec:step.py:430 Step resample_spec running with args (<SourceModelContainer>,). INFO stpipe.Spec3Pipeline.resample_spec:step.py:434 Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True} INFO stpipe.Spec3Pipeline.resample_spec:resample_spec_step.py:60 No DRIZPARS reffile INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: pixfrac=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: pixfrac=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: kernel='square' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: kernel='square' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: fillval='INDEF' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: fillval='INDEF' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: wht_type='ivm' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: wht_type='ivm' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: pscale_ratio=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: pscale_ratio=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec3Pipeline.resample_spec:resample.py:136 Blending metadata for None INFO stpipe.Spec3Pipeline.resample_spec:resample.py:136 Blending metadata for None INFO stpipe.Spec3Pipeline.resample_spec:resample.py:210 Resampling science data INFO stpipe.Spec3Pipeline.resample_spec:resample.py:210 Resampling science data DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (27, 1340) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (27, 1340) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (29, 1338) --> (27, 1340) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (29, 1338) --> (27, 1340) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (27, 1340) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (27, 1340) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (29, 1338) --> (27, 1340) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (29, 1338) --> (27, 1340) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (27, 1340) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (27, 1340) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (29, 1338) --> (27, 1340) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (29, 1338) --> (27, 1340) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:263 Resampling var_rnoise INFO stpipe.Spec3Pipeline.resample_spec:resample.py:263 Resampling var_rnoise DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1340) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1340) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (29, 1338) --> (27, 1340) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (29, 1338) --> (27, 1340) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1340) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1340) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (29, 1338) --> (27, 1340) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (29, 1338) --> (27, 1340) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1340) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1340) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (29, 1338) --> (27, 1340) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (29, 1338) --> (27, 1340) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:263 Resampling var_poisson INFO stpipe.Spec3Pipeline.resample_spec:resample.py:263 Resampling var_poisson DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1340) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1340) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (29, 1338) --> (27, 1340) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (29, 1338) --> (27, 1340) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1340) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1340) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (29, 1338) --> (27, 1340) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (29, 1338) --> (27, 1340) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1340) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1340) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (29, 1338) --> (27, 1340) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (29, 1338) --> (27, 1340) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:263 Resampling var_flat INFO stpipe.Spec3Pipeline.resample_spec:resample.py:263 Resampling var_flat DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1340) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1340) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (29, 1338) --> (27, 1340) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (29, 1338) --> (27, 1340) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1340) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1340) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (29, 1338) --> (27, 1340) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (29, 1338) --> (27, 1340) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1340) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (27, 1340) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (29, 1338) --> (27, 1340) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (29, 1338) --> (27, 1340) INFO stpipe.Spec3Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 98.813500981 -66.803215334 98.854433604 -66.803215334 98.854433604 -66.731487702 98.813500981 -66.731487702 INFO stpipe.Spec3Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 98.813500981 -66.803215334 98.854433604 -66.803215334 98.854433604 -66.731487702 98.813500981 -66.731487702 INFO stpipe.Spec3Pipeline.resample_spec:step.py:1016 Saved model in jw00626-o030_s00279_nirspec_f170lp-g235m_s2d.fits INFO stpipe.Spec3Pipeline.resample_spec:step.py:546 Step resample_spec done INFO stpipe.Spec3Pipeline.extract_1d:step.py:430 Step extract_1d running with args (<SlitModel(27, 1340) from jw00626-o030_s00279_nirspec_f170lp-g235m_s2d.fits>,). INFO stpipe.Spec3Pipeline.extract_1d:step.py:434 Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None} DEBUG stpipe.Spec3Pipeline.extract_1d:extract_1d_step.py:167 Input is a SlitModel INFO stpipe.Spec3Pipeline.extract_1d:extract_1d_step.py:389 Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json INFO stpipe.Spec3Pipeline.extract_1d:extract_1d_step.py:397 Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits INFO stpipe.Spec3Pipeline.extract_1d:extract.py:2780 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Spec3Pipeline.extract_1d:extract.py:2780 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Spec3Pipeline.extract_1d:extract.py:2917 Processing spectral order -1 INFO stpipe.Spec3Pipeline.extract_1d:extract.py:2917 Processing spectral order -1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:454 use_source_posn = True DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:454 use_source_posn = True WARNING stpipe.Spec3Pipeline.extract_1d:extract.py:1449 WCS implies the target is at -85298059111162142057930660268764680945664.00, which is outside the bounding box, WARNING stpipe.Spec3Pipeline.extract_1d:extract.py:1449 WCS implies the target is at -85298059111162142057930660268764680945664.00, which is outside the bounding box, WARNING stpipe.Spec3Pipeline.extract_1d:extract.py:1450 so we can't get spectrum location using the WCS WARNING stpipe.Spec3Pipeline.extract_1d:extract.py:1450 so we can't get spectrum location using the WCS DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1301 Spectrum location from WCS used column/row 669 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1301 Spectrum location from WCS used column/row 669 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[9.0], [17.0]] DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[9.0], [17.0]] INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1339, ystart=9.5, ystop=16.5 INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1339, ystart=9.5, ystop=16.5 INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3770 Applying Aperture correction. INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3770 Applying Aperture correction. DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:2952 Not copying from the INT_TIMES table because this is not a TSO exposure. DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:2952 Not copying from the INT_TIMES table because this is not a TSO exposure. INFO stpipe.Spec3Pipeline.extract_1d:step.py:1016 Saved model in jw00626-o030_s00279_nirspec_f170lp-g235m_x1d.fits INFO stpipe.Spec3Pipeline.extract_1d:step.py:546 Step extract_1d done INFO stpipe.Spec3Pipeline:step.py:1016 Saved model in jw00626-o030_s00000_nirspec_f170lp-g235m_cal.fits INFO stpipe.Spec3Pipeline.outlier_detection:step.py:430 Step outlier_detection running with args (<SourceModelContainer>,). INFO stpipe.Spec3Pipeline.outlier_detection:step.py:434 Step outlier_detection parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'crf', 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'weight_type': 'ivm', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'nlow': 0, 'nhigh': 0, 'maskpt': 0.7, 'grow': 1, 'snr': '5.0 4.0', 'scale': '1.2 0.7', 'backg': 0.0, 'save_intermediate_results': False, 'resample_data': True, 'good_bits': '~DO_NOT_USE', 'scale_detection': False, 'allowed_memory': None, 'in_memory': False} INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection_step.py:194 Performing outlier detection on 3 inputs DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection_step.py:158 Using OutlierDetectionSpec class for outlier_detection DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:177 Defined output product suffix as: _outlier_s2d.fits DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:177 Defined output product suffix as: _outlier_s2d.fits INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:162 1 exposures to drizzle together INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:162 1 exposures to drizzle together DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (22, 1334) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (22, 1334) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (18, 1331) --> (22, 1334) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (18, 1331) --> (22, 1334) INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:184 Exposure jw00626030001_02103_00001_nrs1_outlier_i2d.fits saved to file INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:184 Exposure jw00626030001_02103_00001_nrs1_outlier_i2d.fits saved to file INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:162 1 exposures to drizzle together INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:162 1 exposures to drizzle together DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (22, 1334) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (22, 1334) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (18, 1332) --> (22, 1334) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (18, 1332) --> (22, 1334) INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:184 Exposure jw00626030001_02103_00002_nrs1_outlier_i2d.fits saved to file INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:184 Exposure jw00626030001_02103_00002_nrs1_outlier_i2d.fits saved to file INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:162 1 exposures to drizzle together INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:162 1 exposures to drizzle together DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (22, 1334) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (22, 1334) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (18, 1332) --> (22, 1334) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (18, 1332) --> (22, 1334) INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:184 Exposure jw00626030001_02103_00003_nrs1_outlier_i2d.fits saved to file INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:184 Exposure jw00626030001_02103_00003_nrs1_outlier_i2d.fits saved to file DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:292 Percentage of pixels with low weight: 98.85852528281313 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:292 Percentage of pixels with low weight: 98.85852528281313 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:292 Percentage of pixels with low weight: 99.07319067738858 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:292 Percentage of pixels with low weight: 99.07319067738858 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:292 Percentage of pixels with low weight: 97.97260460678751 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:292 Percentage of pixels with low weight: 97.97260460678751 INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:322 Blotting median... INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:322 Blotting median... DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (18, 1331) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (18, 1331) <-- (22, 1334) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (18, 1331) <-- (22, 1334) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (18, 1332) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (18, 1332) <-- (22, 1334) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (18, 1332) <-- (22, 1334) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (18, 1332) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (18, 1332) <-- (22, 1334) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (18, 1332) <-- (22, 1334) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:372 Flagging outliers INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:372 Flagging outliers INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:step.py:1016 Saved model in jw00626-o030_s00000_nirspec_f170lp-g235m_crf.fits INFO stpipe.Spec3Pipeline.outlier_detection:step.py:546 Step outlier_detection done INFO stpipe.Spec3Pipeline.resample_spec:step.py:430 Step resample_spec running with args (<SourceModelContainer>,). INFO stpipe.Spec3Pipeline.resample_spec:step.py:434 Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True} INFO stpipe.Spec3Pipeline.resample_spec:resample_spec_step.py:60 No DRIZPARS reffile INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: pixfrac=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: pixfrac=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: kernel='square' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: kernel='square' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: fillval='INDEF' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: fillval='INDEF' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: wht_type='ivm' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: wht_type='ivm' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: pscale_ratio=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: pscale_ratio=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec3Pipeline.resample_spec:resample.py:136 Blending metadata for None INFO stpipe.Spec3Pipeline.resample_spec:resample.py:136 Blending metadata for None INFO stpipe.Spec3Pipeline.resample_spec:resample.py:210 Resampling science data INFO stpipe.Spec3Pipeline.resample_spec:resample.py:210 Resampling science data DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (22, 1334) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (22, 1334) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (18, 1331) --> (22, 1334) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (18, 1331) --> (22, 1334) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (22, 1334) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (22, 1334) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (18, 1332) --> (22, 1334) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (18, 1332) --> (22, 1334) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (22, 1334) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (22, 1334) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (18, 1332) --> (22, 1334) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (18, 1332) --> (22, 1334) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:263 Resampling var_rnoise INFO stpipe.Spec3Pipeline.resample_spec:resample.py:263 Resampling var_rnoise DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (22, 1334) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (22, 1334) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (18, 1331) --> (22, 1334) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (18, 1331) --> (22, 1334) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (22, 1334) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (22, 1334) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (18, 1332) --> (22, 1334) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (18, 1332) --> (22, 1334) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (22, 1334) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (22, 1334) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (18, 1332) --> (22, 1334) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (18, 1332) --> (22, 1334) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:263 Resampling var_poisson INFO stpipe.Spec3Pipeline.resample_spec:resample.py:263 Resampling var_poisson DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (22, 1334) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (22, 1334) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (18, 1331) --> (22, 1334) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (18, 1331) --> (22, 1334) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (22, 1334) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (22, 1334) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (18, 1332) --> (22, 1334) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (18, 1332) --> (22, 1334) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (22, 1334) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (22, 1334) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (18, 1332) --> (22, 1334) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (18, 1332) --> (22, 1334) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:263 Resampling var_flat INFO stpipe.Spec3Pipeline.resample_spec:resample.py:263 Resampling var_flat DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (22, 1334) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (22, 1334) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (18, 1331) --> (22, 1334) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (18, 1331) --> (22, 1334) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (22, 1334) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (22, 1334) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (18, 1332) --> (22, 1334) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (18, 1332) --> (22, 1334) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (22, 1334) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (22, 1334) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (18, 1332) --> (22, 1334) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (18, 1332) --> (22, 1334) INFO stpipe.Spec3Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 98.833506544 -66.805534899 98.873720968 -66.805534899 98.873720968 -66.734304492 98.833506544 -66.734304492 INFO stpipe.Spec3Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 98.833506544 -66.805534899 98.873720968 -66.805534899 98.873720968 -66.734304492 98.833506544 -66.734304492 INFO stpipe.Spec3Pipeline.resample_spec:step.py:1016 Saved model in jw00626-o030_s00000_nirspec_f170lp-g235m_s2d.fits INFO stpipe.Spec3Pipeline.resample_spec:step.py:546 Step resample_spec done INFO stpipe.Spec3Pipeline.extract_1d:step.py:430 Step extract_1d running with args (<SlitModel(22, 1334) from jw00626-o030_s00000_nirspec_f170lp-g235m_s2d.fits>,). INFO stpipe.Spec3Pipeline.extract_1d:step.py:434 Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None} DEBUG stpipe.Spec3Pipeline.extract_1d:extract_1d_step.py:167 Input is a SlitModel INFO stpipe.Spec3Pipeline.extract_1d:extract_1d_step.py:389 Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json INFO stpipe.Spec3Pipeline.extract_1d:extract_1d_step.py:397 Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits INFO stpipe.Spec3Pipeline.extract_1d:extract.py:2780 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Spec3Pipeline.extract_1d:extract.py:2780 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Spec3Pipeline.extract_1d:extract.py:2917 Processing spectral order -1 INFO stpipe.Spec3Pipeline.extract_1d:extract.py:2917 Processing spectral order -1 INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3614 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:454 use_source_posn = False DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[6.5], [14.5]] DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[6.5], [14.5]] INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1333, ystart=7.0, ystop=14.0 INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1333, ystart=7.0, ystop=14.0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:2952 Not copying from the INT_TIMES table because this is not a TSO exposure. DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:2952 Not copying from the INT_TIMES table because this is not a TSO exposure. INFO stpipe.Spec3Pipeline.extract_1d:step.py:1016 Saved model in jw00626-o030_s00000_nirspec_f170lp-g235m_x1d.fits INFO stpipe.Spec3Pipeline.extract_1d:step.py:546 Step extract_1d done INFO stpipe.Spec3Pipeline:step.py:1016 Saved model in jw00626-o030_s02315_nirspec_f170lp-g235m_cal.fits INFO stpipe.Spec3Pipeline.outlier_detection:step.py:430 Step outlier_detection running with args (<SourceModelContainer>,). INFO stpipe.Spec3Pipeline.outlier_detection:step.py:434 Step outlier_detection parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'crf', 'search_output_file': False, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'weight_type': 'ivm', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'nlow': 0, 'nhigh': 0, 'maskpt': 0.7, 'grow': 1, 'snr': '5.0 4.0', 'scale': '1.2 0.7', 'backg': 0.0, 'save_intermediate_results': False, 'resample_data': True, 'good_bits': '~DO_NOT_USE', 'scale_detection': False, 'allowed_memory': None, 'in_memory': False} INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection_step.py:194 Performing outlier detection on 3 inputs DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection_step.py:158 Using OutlierDetectionSpec class for outlier_detection DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:177 Defined output product suffix as: _outlier_s2d.fits DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:177 Defined output product suffix as: _outlier_s2d.fits INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec3Pipeline.outlier_detection:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:162 1 exposures to drizzle together INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:162 1 exposures to drizzle together DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (28, 1435) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (28, 1435) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (28, 1433) --> (28, 1435) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (28, 1433) --> (28, 1435) INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:184 Exposure jw00626030001_02103_00001_nrs1_outlier_i2d.fits saved to file INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:184 Exposure jw00626030001_02103_00001_nrs1_outlier_i2d.fits saved to file INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:162 1 exposures to drizzle together INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:162 1 exposures to drizzle together DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (28, 1435) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (28, 1435) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (28, 1433) --> (28, 1435) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (28, 1433) --> (28, 1435) INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:184 Exposure jw00626030001_02103_00002_nrs1_outlier_i2d.fits saved to file INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:184 Exposure jw00626030001_02103_00002_nrs1_outlier_i2d.fits saved to file INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:162 1 exposures to drizzle together INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:162 1 exposures to drizzle together DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (28, 1435) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (28, 1435) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (28, 1433) --> (28, 1435) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (28, 1433) --> (28, 1435) INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:184 Exposure jw00626030001_02103_00003_nrs1_outlier_i2d.fits saved to file INFO stpipe.Spec3Pipeline.outlier_detection:resample.py:184 Exposure jw00626030001_02103_00003_nrs1_outlier_i2d.fits saved to file DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:292 Percentage of pixels with low weight: 77.08561473369836 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:292 Percentage of pixels with low weight: 77.08561473369836 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:292 Percentage of pixels with low weight: 77.32951717272275 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:292 Percentage of pixels with low weight: 77.32951717272275 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:292 Percentage of pixels with low weight: 77.33200597312096 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:292 Percentage of pixels with low weight: 77.33200597312096 INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:322 Blotting median... INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:322 Blotting median... DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (28, 1433) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (28, 1433) <-- (28, 1435) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (28, 1433) <-- (28, 1435) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (28, 1433) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (28, 1433) <-- (28, 1435) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (28, 1433) <-- (28, 1435) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:527 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:528 Sci shape: (28, 1433) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (28, 1433) <-- (28, 1435) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:531 Blotting (28, 1433) <-- (28, 1435) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:372 Flagging outliers INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:372 Flagging outliers INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:472 New pixels flagged as outliers: 0 (0.00%) INFO stpipe.Spec3Pipeline.outlier_detection:step.py:1016 Saved model in jw00626-o030_s02315_nirspec_f170lp-g235m_crf.fits INFO stpipe.Spec3Pipeline.outlier_detection:step.py:546 Step outlier_detection done INFO stpipe.Spec3Pipeline.resample_spec:step.py:430 Step resample_spec running with args (<SourceModelContainer>,). INFO stpipe.Spec3Pipeline.resample_spec:step.py:434 Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True} INFO stpipe.Spec3Pipeline.resample_spec:resample_spec_step.py:60 No DRIZPARS reffile INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: pixfrac=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: pixfrac=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: kernel='square' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: kernel='square' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: fillval='INDEF' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: fillval='INDEF' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: wht_type='ivm' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: wht_type='ivm' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: pscale_ratio=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:257 using: pscale_ratio=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:87 Driz parameter kernal: square INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:88 Driz parameter pixfrac: 1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:89 Driz parameter fillval: INDEF INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec3Pipeline.resample_spec:resample_spec.py:90 Driz parameter weight_type: ivm INFO stpipe.Spec3Pipeline.resample_spec:resample.py:136 Blending metadata for None INFO stpipe.Spec3Pipeline.resample_spec:resample.py:136 Blending metadata for None INFO stpipe.Spec3Pipeline.resample_spec:resample.py:210 Resampling science data INFO stpipe.Spec3Pipeline.resample_spec:resample.py:210 Resampling science data DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (28, 1435) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (28, 1435) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (28, 1433) --> (28, 1435) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (28, 1433) --> (28, 1435) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (28, 1435) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (28, 1435) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (28, 1433) --> (28, 1435) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (28, 1433) --> (28, 1435) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (28, 1435) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (28, 1435) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (28, 1433) --> (28, 1435) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (28, 1433) --> (28, 1435) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:263 Resampling var_rnoise INFO stpipe.Spec3Pipeline.resample_spec:resample.py:263 Resampling var_rnoise DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1435) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1435) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (28, 1433) --> (28, 1435) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (28, 1433) --> (28, 1435) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1435) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1435) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (28, 1433) --> (28, 1435) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (28, 1433) --> (28, 1435) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1435) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1435) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (28, 1433) --> (28, 1435) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (28, 1433) --> (28, 1435) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:263 Resampling var_poisson INFO stpipe.Spec3Pipeline.resample_spec:resample.py:263 Resampling var_poisson DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1435) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1435) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (28, 1433) --> (28, 1435) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (28, 1433) --> (28, 1435) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1435) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1435) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (28, 1433) --> (28, 1435) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (28, 1433) --> (28, 1435) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1435) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1435) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (28, 1433) --> (28, 1435) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (28, 1433) --> (28, 1435) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:263 Resampling var_flat INFO stpipe.Spec3Pipeline.resample_spec:resample.py:263 Resampling var_flat DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1435) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1435) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (28, 1433) --> (28, 1435) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (28, 1433) --> (28, 1435) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1435) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1435) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (28, 1433) --> (28, 1435) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (28, 1433) --> (28, 1435) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:103 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:473 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:474 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1435) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:475 Output Sci shape: (28, 1435) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (28, 1433) --> (28, 1435) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:477 Drizzling (28, 1433) --> (28, 1435) INFO stpipe.Spec3Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 98.880472247 -66.807347157 98.924169504 -66.807347157 98.924169504 -66.730772757 98.880472247 -66.730772757 INFO stpipe.Spec3Pipeline.resample_spec:util.py:1060 Update S_REGION to POLYGON ICRS 98.880472247 -66.807347157 98.924169504 -66.807347157 98.924169504 -66.730772757 98.880472247 -66.730772757 INFO stpipe.Spec3Pipeline.resample_spec:step.py:1016 Saved model in jw00626-o030_s02315_nirspec_f170lp-g235m_s2d.fits INFO stpipe.Spec3Pipeline.resample_spec:step.py:546 Step resample_spec done INFO stpipe.Spec3Pipeline.extract_1d:step.py:430 Step extract_1d running with args (<SlitModel(28, 1435) from jw00626-o030_s02315_nirspec_f170lp-g235m_s2d.fits>,). INFO stpipe.Spec3Pipeline.extract_1d:step.py:434 Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None} DEBUG stpipe.Spec3Pipeline.extract_1d:extract_1d_step.py:167 Input is a SlitModel INFO stpipe.Spec3Pipeline.extract_1d:extract_1d_step.py:389 Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json INFO stpipe.Spec3Pipeline.extract_1d:extract_1d_step.py:397 Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits INFO stpipe.Spec3Pipeline.extract_1d:extract.py:2780 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Spec3Pipeline.extract_1d:extract.py:2780 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Spec3Pipeline.extract_1d:extract.py:2917 Processing spectral order -1 INFO stpipe.Spec3Pipeline.extract_1d:extract.py:2917 Processing spectral order -1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:440 Initial parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:441 dispaxis = 1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:442 spectral order = -1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:443 initial xstart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:444 initial xstop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:445 initial ystart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:446 initial ystop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:447 extract_width = 8 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:448 initial src_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:449 initial bkg_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:450 bkg_fit = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:451 bkg_order = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:452 smoothing_length = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:453 independent_var = pixel DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:454 use_source_posn = True DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:454 use_source_posn = True WARNING stpipe.Spec3Pipeline.extract_1d:extract.py:1449 WCS implies the target is at -85124039678643631290596759093731259318272.00, which is outside the bounding box, WARNING stpipe.Spec3Pipeline.extract_1d:extract.py:1449 WCS implies the target is at -85124039678643631290596759093731259318272.00, which is outside the bounding box, WARNING stpipe.Spec3Pipeline.extract_1d:extract.py:1450 so we can't get spectrum location using the WCS WARNING stpipe.Spec3Pipeline.extract_1d:extract.py:1450 so we can't get spectrum location using the WCS DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1301 Spectrum location from WCS used column/row 717 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1301 Spectrum location from WCS used column/row 717 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1655 Updated parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1656 position_correction = 0.0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[9.5], [17.5]] DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1723 Converting extraction limits to [[9.5], [17.5]] INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1434, ystart=10.0, ystop=17.0 INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3433 Using extraction limits: xstart=0, xstop=1434, ystart=10.0, ystop=17.0 INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3770 Applying Aperture correction. INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3770 Applying Aperture correction. DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:2952 Not copying from the INT_TIMES table because this is not a TSO exposure. DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:2952 Not copying from the INT_TIMES table because this is not a TSO exposure. INFO stpipe.Spec3Pipeline.extract_1d:step.py:1016 Saved model in jw00626-o030_s02315_nirspec_f170lp-g235m_x1d.fits INFO stpipe.Spec3Pipeline.extract_1d:step.py:546 Step extract_1d done INFO stpipe.Spec3Pipeline:calwebb_spec3.py:280 Ending calwebb_spec3 INFO stpipe.Spec3Pipeline:step.py:546 Step Spec3Pipeline done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00000-crf] | 0.21 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00000-x1d] | 0.21 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00227-cal] | 0.31 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00227-crf] | 0.40 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00279-cal] | 0.33 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00279-crf] | 0.34 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00443-cal] | 0.42 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00443-crf] | 0.39 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00482-cal] | 0.43 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00482-crf] | 0.41 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s02315-cal] | 0.22 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s02315-crf] | 0.30 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_steps_spec2.py::test_nirspec_ifu_user_supplied_flat | 14.45 | |
|
------------------------------Captured stderr call------------------------------ 2022-10-06 05:09:38,525 - stpipe - INFO - Pre-computed flat <ImageModel(2048, 2048) from nrs_ifu_nrs1_interpolated_flat.fits> provided. Using the flat directly -------------------------------Captured log call-------------------------------- INFO stpipe:flat_field.py:555 Pre-computed flat <ImageModel(2048, 2048) from nrs_ifu_nrs1_interpolated_flat.fits> provided. Using the flat directly INFO stpipe:flat_field.py:555 Pre-computed flat <ImageModel(2048, 2048) from nrs_ifu_nrs1_interpolated_flat.fits> provided. Using the flat directly | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_steps_spec2.py::test_flat_field_step_user_supplied_flat | 27.22 | |
|
------------------------------Captured stderr call------------------------------ 2022-10-06 05:09:52,413 - stpipe.FlatFieldStep - INFO - FlatFieldStep instance created. 2022-10-06 05:09:53,007 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp3/nrs_ifu_nrs1_assign_wcs.fits',). 2022-10-06 05:09:53,008 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp3/nrs_ifu_nrs1_interpolated_flat.fits', 'inverse': False} 2022-10-06 05:09:58,134 - stpipe.FlatFieldStep - INFO - User-supplied flat /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp3/nrs_ifu_nrs1_interpolated_flat.fits given. Ignoring all flat reference files and flat creation. 2022-10-06 05:10:04,897 - stpipe.FlatFieldStep - INFO - Pre-computed flat <ImageModel(2048, 2048) from nrs_ifu_nrs1_interpolated_flat.fits> provided. Using the flat directly 2022-10-06 05:10:05,028 - stpipe.FlatFieldStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 05:10:05,028 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep done -------------------------------Captured log call-------------------------------- INFO stpipe.FlatFieldStep:step.py:366 FlatFieldStep instance created. INFO stpipe.FlatFieldStep:step.py:430 Step FlatFieldStep running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp3/nrs_ifu_nrs1_assign_wcs.fits',). INFO stpipe.FlatFieldStep:step.py:434 Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp3/nrs_ifu_nrs1_interpolated_flat.fits', 'inverse': False} DEBUG stpipe.FlatFieldStep:flat_field_step.py:74 Input is IFUImageModel of exposure type NRS_IFU INFO stpipe.FlatFieldStep:flat_field_step.py:96 User-supplied flat /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp3/nrs_ifu_nrs1_interpolated_flat.fits given. Ignoring all flat reference files and flat creation. DEBUG stpipe.FlatFieldStep:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.FlatFieldStep:flat_field.py:275 Flat field correction for NIRSpec spectrographic data. INFO stpipe.FlatFieldStep:flat_field.py:555 Pre-computed flat <ImageModel(2048, 2048) from nrs_ifu_nrs1_interpolated_flat.fits> provided. Using the flat directly INFO stpipe.FlatFieldStep:flat_field.py:555 Pre-computed flat <ImageModel(2048, 2048) from nrs_ifu_nrs1_interpolated_flat.fits> provided. Using the flat directly INFO stpipe.FlatFieldStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.FlatFieldStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.FlatFieldStep:step.py:546 Step FlatFieldStep done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_subarray.py::test_nirspec_detector1[group_scale] | 14.75 | |
|
-----------------------------Captured stderr setup------------------------------ 2022-10-06 05:10:14,003 - stpipe - INFO - PARS-DETECTOR1PIPELINE parameters found: /grp/crds/cache/references/jwst/jwst_nirspec_pars-detector1pipeline_0004.asdf 2022-10-06 05:10:14,034 - stpipe.Detector1Pipeline - INFO - Detector1Pipeline instance created. 2022-10-06 05:10:14,035 - stpipe.Detector1Pipeline.group_scale - INFO - GroupScaleStep instance created. 2022-10-06 05:10:14,036 - stpipe.Detector1Pipeline.dq_init - INFO - DQInitStep instance created. 2022-10-06 05:10:14,037 - stpipe.Detector1Pipeline.saturation - INFO - SaturationStep instance created. 2022-10-06 05:10:14,038 - stpipe.Detector1Pipeline.ipc - INFO - IPCStep instance created. 2022-10-06 05:10:14,039 - stpipe.Detector1Pipeline.superbias - INFO - SuperBiasStep instance created. 2022-10-06 05:10:14,040 - stpipe.Detector1Pipeline.refpix - INFO - RefPixStep instance created. 2022-10-06 05:10:14,040 - stpipe.Detector1Pipeline.rscd - INFO - RscdStep instance created. 2022-10-06 05:10:14,041 - stpipe.Detector1Pipeline.firstframe - INFO - FirstFrameStep instance created. 2022-10-06 05:10:14,042 - stpipe.Detector1Pipeline.lastframe - INFO - LastFrameStep instance created. 2022-10-06 05:10:14,043 - stpipe.Detector1Pipeline.linearity - INFO - LinearityStep instance created. 2022-10-06 05:10:14,044 - stpipe.Detector1Pipeline.dark_current - INFO - DarkCurrentStep instance created. 2022-10-06 05:10:14,045 - stpipe.Detector1Pipeline.reset - INFO - ResetStep instance created. 2022-10-06 05:10:14,046 - stpipe.Detector1Pipeline.persistence - INFO - PersistenceStep instance created. 2022-10-06 05:10:14,047 - stpipe.Detector1Pipeline.jump - INFO - JumpStep instance created. 2022-10-06 05:10:14,048 - stpipe.Detector1Pipeline.ramp_fit - INFO - RampFitStep instance created. 2022-10-06 05:10:14,048 - stpipe.Detector1Pipeline.gain_scale - INFO - GainScaleStep instance created. 2022-10-06 05:10:15,658 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0/nrs1_group_subarray.fits',). 2022-10-06 05:10:15,673 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'save_calibrated_ramp': False, 'steps': {'group_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'}, 'dq_init': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'}, 'saturation': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'n_pix_grow_sat': 1}, 'ipc': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'}, 'superbias': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'}, 'refpix': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True}, 'rscd': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'type': 'baseline'}, 'firstframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'}, 'lastframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'}, 'linearity': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'}, 'dark_current': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'dark_output': None}, 'reset': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'}, 'persistence': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'input_trapsfilled': '', 'flag_pers_cutoff': 40.0, 'save_persistence': False, 'save_trapsfilled': True}, 'jump': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'rejection_threshold': 4.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0, 'after_jump_flag_dn1': 0.0, 'after_jump_flag_time1': 0.0, 'after_jump_flag_dn2': 0.0, 'after_jump_flag_time2': 0.0}, 'ramp_fit': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'int_name': '', 'save_opt': False, 'opt_name': '', 'suppress_one_group': True, 'maximum_cores': 'none'}, 'gain_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'}}} 2022-10-06 05:10:15,739 - stpipe.Detector1Pipeline - INFO - Prefetching reference files for dataset: 'nrs1_group_subarray.fits' reftypes = ['dark', 'gain', 'linearity', 'mask', 'persat', 'readnoise', 'refpix', 'reset', 'rscd', 'saturation', 'superbias', 'trapdensity', 'trappars'] 2022-10-06 05:10:15,753 - stpipe.Detector1Pipeline - INFO - Prefetch for DARK reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dark_0078.fits'. 2022-10-06 05:10:15,755 - stpipe.Detector1Pipeline - INFO - Prefetch for GAIN reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_gain_0019.fits'. 2022-10-06 05:10:15,756 - stpipe.Detector1Pipeline - INFO - Prefetch for LINEARITY reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_linearity_0008.fits'. 2022-10-06 05:10:15,757 - stpipe.Detector1Pipeline - INFO - Prefetch for MASK reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_mask_0024.fits'. 2022-10-06 05:10:15,758 - stpipe.Detector1Pipeline - INFO - Prefetch for PERSAT reference file is 'N/A'. 2022-10-06 05:10:15,758 - stpipe.Detector1Pipeline - INFO - Prefetch for READNOISE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0006.fits'. 2022-10-06 05:10:15,760 - stpipe.Detector1Pipeline - INFO - Prefetch for REFPIX reference file is 'N/A'. 2022-10-06 05:10:15,760 - stpipe.Detector1Pipeline - INFO - Prefetch for RESET reference file is 'N/A'. 2022-10-06 05:10:15,760 - stpipe.Detector1Pipeline - INFO - Prefetch for RSCD reference file is 'N/A'. 2022-10-06 05:10:15,760 - stpipe.Detector1Pipeline - INFO - Prefetch for SATURATION reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_saturation_0010.fits'. 2022-10-06 05:10:15,761 - stpipe.Detector1Pipeline - INFO - Prefetch for SUPERBIAS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_superbias_0109.fits'. 2022-10-06 05:10:15,762 - stpipe.Detector1Pipeline - INFO - Prefetch for TRAPDENSITY reference file is 'N/A'. 2022-10-06 05:10:15,762 - stpipe.Detector1Pipeline - INFO - Prefetch for TRAPPARS reference file is 'N/A'. 2022-10-06 05:10:15,762 - stpipe.Detector1Pipeline - INFO - Starting calwebb_detector1 ... 2022-10-06 05:10:16,447 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale running with args (<RampModel(1, 2, 256, 2048) from nrs1_group_subarray.fits>,). 2022-10-06 05:10:16,449 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'} 2022-10-06 05:10:16,499 - stpipe.Detector1Pipeline.group_scale - INFO - NFRAMES=3, FRMDIVSR=4 2022-10-06 05:10:16,499 - stpipe.Detector1Pipeline.group_scale - INFO - Rescaling all groups by 4/3 2022-10-06 05:10:16,575 - stpipe.Detector1Pipeline.group_scale - INFO - Saved model in nrs1_group_subarray_group_scale.fits 2022-10-06 05:10:16,575 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale done 2022-10-06 05:10:17,184 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init running with args (<RampModel(1, 2, 256, 2048) from nrs1_group_subarray_group_scale.fits>,). 2022-10-06 05:10:17,185 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'} 2022-10-06 05:10:17,216 - stpipe.Detector1Pipeline.dq_init - INFO - Using MASK reference file /grp/crds/cache/references/jwst/jwst_nirspec_mask_0024.fits 2022-10-06 05:10:17,827 - stpipe.Detector1Pipeline.dq_init - INFO - Extracting mask subarray to match science data 2022-10-06 05:10:17,847 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init done 2022-10-06 05:10:18,551 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation running with args (<RampModel(1, 2, 256, 2048) from nrs1_group_subarray_group_scale.fits>,). 2022-10-06 05:10:18,555 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'n_pix_grow_sat': 1} 2022-10-06 05:10:18,580 - stpipe.Detector1Pipeline.saturation - INFO - Using SATURATION reference file /grp/crds/cache/references/jwst/jwst_nirspec_saturation_0010.fits 2022-10-06 05:10:18,963 - stpipe.Detector1Pipeline.saturation - INFO - Extracting reference file subarray to match science data 2022-10-06 05:10:19,015 - stpipe.Detector1Pipeline.saturation - INFO - Detected 11780 saturated pixels 2022-10-06 05:10:19,017 - stpipe.Detector1Pipeline.saturation - INFO - Detected 0 A/D floor pixels 2022-10-06 05:10:19,024 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation done 2022-10-06 05:10:19,331 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc running with args (<RampModel(1, 2, 256, 2048) from nrs1_group_subarray_group_scale.fits>,). 2022-10-06 05:10:19,333 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'} 2022-10-06 05:10:19,333 - stpipe.Detector1Pipeline.ipc - INFO - Step skipped. 2022-10-06 05:10:19,336 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc done 2022-10-06 05:10:19,658 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias running with args (<RampModel(1, 2, 256, 2048) from nrs1_group_subarray_group_scale.fits>,). 2022-10-06 05:10:19,659 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'} 2022-10-06 05:10:19,684 - stpipe.Detector1Pipeline.superbias - INFO - Using SUPERBIAS reference file /grp/crds/cache/references/jwst/jwst_nirspec_superbias_0109.fits 2022-10-06 05:10:20,094 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias done 2022-10-06 05:10:20,406 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix running with args (<RampModel(1, 2, 256, 2048) from nrs1_group_subarray_group_scale.fits>,). 2022-10-06 05:10:20,407 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True} 2022-10-06 05:10:20,457 - stpipe.Detector1Pipeline.refpix - INFO - NIR subarray data 2022-10-06 05:10:20,465 - stpipe.Detector1Pipeline.refpix - INFO - Single readout amplifier used 2022-10-06 05:10:20,465 - stpipe.Detector1Pipeline.refpix - INFO - The following parameter is valid for this mode: 2022-10-06 05:10:20,465 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_columns = True 2022-10-06 05:10:20,465 - stpipe.Detector1Pipeline.refpix - INFO - The following parameters are not applicable and are ignored: 2022-10-06 05:10:20,465 - stpipe.Detector1Pipeline.refpix - INFO - use_side_ref_pixels = True 2022-10-06 05:10:20,465 - stpipe.Detector1Pipeline.refpix - INFO - side_smoothing_length = 11 2022-10-06 05:10:20,465 - stpipe.Detector1Pipeline.refpix - INFO - side_gain = 1.0 2022-10-06 05:10:20,465 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_rows = False 2022-10-06 05:10:20,501 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix done 2022-10-06 05:10:20,860 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity running with args (<RampModel(1, 2, 256, 2048) from nrs1_group_subarray_group_scale.fits>,). 2022-10-06 05:10:20,861 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'} 2022-10-06 05:10:20,886 - stpipe.Detector1Pipeline.linearity - INFO - Using Linearity reference file /grp/crds/cache/references/jwst/jwst_nirspec_linearity_0008.fits 2022-10-06 05:10:22,453 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity done 2022-10-06 05:10:22,762 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current running with args (<RampModel(1, 2, 256, 2048) from nrs1_group_subarray_group_scale.fits>,). 2022-10-06 05:10:22,763 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'dark_output': None} 2022-10-06 05:10:22,794 - stpipe.Detector1Pipeline.dark_current - INFO - Using DARK reference file /grp/crds/cache/references/jwst/jwst_nirspec_dark_0078.fits 2022-10-06 05:10:24,552 - stpipe.Detector1Pipeline.dark_current - INFO - Science data nints=1, ngroups=2, nframes=3, groupgap=0 2022-10-06 05:10:24,553 - stpipe.Detector1Pipeline.dark_current - INFO - Dark data nints=1, ngroups=10, nframes=1, groupgap=0 2022-10-06 05:10:24,620 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current done 2022-10-06 05:10:24,912 - stpipe.Detector1Pipeline.jump - INFO - Step jump running with args (<RampModel(1, 2, 256, 2048) from nrs1_group_subarray_group_scale.fits>,). 2022-10-06 05:10:24,913 - stpipe.Detector1Pipeline.jump - INFO - Step jump parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'rejection_threshold': 4.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0, 'after_jump_flag_dn1': 0.0, 'after_jump_flag_time1': 0.0, 'after_jump_flag_dn2': 0.0, 'after_jump_flag_time2': 0.0} 2022-10-06 05:10:24,923 - stpipe.Detector1Pipeline.jump - WARNING - Cannot apply jump detection when NGROUPS<=2; 2022-10-06 05:10:24,924 - stpipe.Detector1Pipeline.jump - WARNING - Jump step will be skipped 2022-10-06 05:10:24,955 - stpipe.Detector1Pipeline.jump - INFO - Step jump done 2022-10-06 05:10:25,256 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit running with args (<RampModel(1, 2, 256, 2048) from nrs1_group_subarray_group_scale.fits>,). 2022-10-06 05:10:25,257 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'int_name': '', 'save_opt': False, 'opt_name': '', 'suppress_one_group': True, 'maximum_cores': 'none'} 2022-10-06 05:10:25,294 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using READNOISE reference file: /grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0006.fits 2022-10-06 05:10:25,295 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using GAIN reference file: /grp/crds/cache/references/jwst/jwst_nirspec_gain_0019.fits 2022-10-06 05:10:25,886 - stpipe.Detector1Pipeline.ramp_fit - INFO - Extracting gain subarray to match science data 2022-10-06 05:10:25,887 - stpipe.Detector1Pipeline.ramp_fit - INFO - Extracting readnoise subarray to match science data 2022-10-06 05:10:25,887 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using algorithm = ols 2022-10-06 05:10:25,887 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using weighting = optimal 2022-10-06 05:10:26,648 - stpipe.Detector1Pipeline.ramp_fit - INFO - Number of groups per integration: 2 2022-10-06 05:10:26,648 - stpipe.Detector1Pipeline.ramp_fit - INFO - Number of integrations: 1 2022-10-06 05:10:26,732 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit done 2022-10-06 05:10:27,100 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<ImageModel(256, 2048) from nrs1_group_subarray_group_scale.fits>,). 2022-10-06 05:10:27,101 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'gain_scale', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'} 2022-10-06 05:10:27,139 - stpipe.Detector1Pipeline.gain_scale - INFO - Rescaling by 1.95 2022-10-06 05:10:27,147 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done 2022-10-06 05:10:27,439 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<CubeModel(1, 256, 2048) from nrs1_group_subarray_group_scale.fits>,). 2022-10-06 05:10:27,440 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'gain_scaleints', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'} 2022-10-06 05:10:27,482 - stpipe.Detector1Pipeline.gain_scale - INFO - Rescaling by 1.95 2022-10-06 05:10:27,491 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done 2022-10-06 05:10:27,566 - stpipe.Detector1Pipeline - INFO - Saved model in nrs1_group_subarray_rateints.fits 2022-10-06 05:10:27,567 - stpipe.Detector1Pipeline - INFO - ... ending calwebb_detector1 2022-10-06 05:10:27,567 - stpipe.Detector1Pipeline - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 05:10:27,632 - stpipe.Detector1Pipeline - INFO - Saved model in nrs1_group_subarray_rate.fits 2022-10-06 05:10:27,633 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline done -------------------------------Captured log setup------------------------------- INFO stpipe:pipeline.py:208 PARS-DETECTOR1PIPELINE parameters found: /grp/crds/cache/references/jwst/jwst_nirspec_pars-detector1pipeline_0004.asdf INFO stpipe.Detector1Pipeline:step.py:366 Detector1Pipeline instance created. INFO stpipe.Detector1Pipeline.group_scale:step.py:366 GroupScaleStep instance created. INFO stpipe.Detector1Pipeline.dq_init:step.py:366 DQInitStep instance created. INFO stpipe.Detector1Pipeline.saturation:step.py:366 SaturationStep instance created. INFO stpipe.Detector1Pipeline.ipc:step.py:366 IPCStep instance created. INFO stpipe.Detector1Pipeline.superbias:step.py:366 SuperBiasStep instance created. INFO stpipe.Detector1Pipeline.refpix:step.py:366 RefPixStep instance created. INFO stpipe.Detector1Pipeline.rscd:step.py:366 RscdStep instance created. INFO stpipe.Detector1Pipeline.firstframe:step.py:366 FirstFrameStep instance created. INFO stpipe.Detector1Pipeline.lastframe:step.py:366 LastFrameStep instance created. INFO stpipe.Detector1Pipeline.linearity:step.py:366 LinearityStep instance created. INFO stpipe.Detector1Pipeline.dark_current:step.py:366 DarkCurrentStep instance created. INFO stpipe.Detector1Pipeline.reset:step.py:366 ResetStep instance created. INFO stpipe.Detector1Pipeline.persistence:step.py:366 PersistenceStep instance created. INFO stpipe.Detector1Pipeline.jump:step.py:366 JumpStep instance created. INFO stpipe.Detector1Pipeline.ramp_fit:step.py:366 RampFitStep instance created. INFO stpipe.Detector1Pipeline.gain_scale:step.py:366 GainScaleStep instance created. INFO stpipe.Detector1Pipeline:step.py:430 Step Detector1Pipeline running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0/nrs1_group_subarray.fits',). INFO stpipe.Detector1Pipeline:step.py:434 Step Detector1Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'save_calibrated_ramp': False, 'steps': {'group_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'}, 'dq_init': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'}, 'saturation': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'n_pix_grow_sat': 1}, 'ipc': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'}, 'superbias': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'}, 'refpix': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True}, 'rscd': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'type': 'baseline'}, 'firstframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'}, 'lastframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'}, 'linearity': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'}, 'dark_current': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'dark_output': None}, 'reset': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'}, 'persistence': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'input_trapsfilled': '', 'flag_pers_cutoff': 40.0, 'save_persistence': False, 'save_trapsfilled': True}, 'jump': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'rejection_threshold': 4.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0, 'after_jump_flag_dn1': 0.0, 'after_jump_flag_time1': 0.0, 'after_jump_flag_dn2': 0.0, 'after_jump_flag_time2': 0.0}, 'ramp_fit': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'int_name': '', 'save_opt': False, 'opt_name': '', 'suppress_one_group': True, 'maximum_cores': 'none'}, 'gain_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'}}} INFO stpipe.Detector1Pipeline:pipeline.py:358 Prefetching reference files for dataset: 'nrs1_group_subarray.fits' reftypes = ['dark', 'gain', 'linearity', 'mask', 'persat', 'readnoise', 'refpix', 'reset', 'rscd', 'saturation', 'superbias', 'trapdensity', 'trappars'] INFO stpipe.Detector1Pipeline:pipeline.py:366 Prefetch for DARK reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dark_0078.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:366 Prefetch for GAIN reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_gain_0019.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:366 Prefetch for LINEARITY reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_linearity_0008.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:366 Prefetch for MASK reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_mask_0024.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:366 Prefetch for PERSAT reference file is 'N/A'. INFO stpipe.Detector1Pipeline:pipeline.py:366 Prefetch for READNOISE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0006.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:366 Prefetch for REFPIX reference file is 'N/A'. INFO stpipe.Detector1Pipeline:pipeline.py:366 Prefetch for RESET reference file is 'N/A'. INFO stpipe.Detector1Pipeline:pipeline.py:366 Prefetch for RSCD reference file is 'N/A'. INFO stpipe.Detector1Pipeline:pipeline.py:366 Prefetch for SATURATION reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_saturation_0010.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:366 Prefetch for SUPERBIAS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_superbias_0109.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:366 Prefetch for TRAPDENSITY reference file is 'N/A'. INFO stpipe.Detector1Pipeline:pipeline.py:366 Prefetch for TRAPPARS reference file is 'N/A'. INFO stpipe.Detector1Pipeline:calwebb_detector1.py:68 Starting calwebb_detector1 ... INFO stpipe.Detector1Pipeline:calwebb_detector1.py:68 Starting calwebb_detector1 ... DEBUG stpipe.Detector1Pipeline:calwebb_detector1.py:102 Processing a Near-IR exposure DEBUG stpipe.Detector1Pipeline:calwebb_detector1.py:102 Processing a Near-IR exposure INFO stpipe.Detector1Pipeline.group_scale:step.py:430 Step group_scale running with args (<RampModel(1, 2, 256, 2048) from nrs1_group_subarray.fits>,). INFO stpipe.Detector1Pipeline.group_scale:step.py:434 Step group_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'} INFO stpipe.Detector1Pipeline.group_scale:group_scale.py:38 NFRAMES=3, FRMDIVSR=4 INFO stpipe.Detector1Pipeline.group_scale:group_scale.py:38 NFRAMES=3, FRMDIVSR=4 INFO stpipe.Detector1Pipeline.group_scale:group_scale.py:39 Rescaling all groups by 4/3 INFO stpipe.Detector1Pipeline.group_scale:group_scale.py:39 Rescaling all groups by 4/3 INFO stpipe.Detector1Pipeline.group_scale:step.py:1016 Saved model in nrs1_group_subarray_group_scale.fits INFO stpipe.Detector1Pipeline.group_scale:step.py:546 Step group_scale done INFO stpipe.Detector1Pipeline.dq_init:step.py:430 Step dq_init running with args (<RampModel(1, 2, 256, 2048) from nrs1_group_subarray_group_scale.fits>,). INFO stpipe.Detector1Pipeline.dq_init:step.py:434 Step dq_init parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'} INFO stpipe.Detector1Pipeline.dq_init:dq_init_step.py:65 Using MASK reference file /grp/crds/cache/references/jwst/jwst_nirspec_mask_0024.fits DEBUG stpipe.Detector1Pipeline.dq_init:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.dq_init:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.dq_init:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=897, subsize2=256 DEBUG stpipe.Detector1Pipeline.dq_init:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=897, subsize2=256 INFO stpipe.Detector1Pipeline.dq_init:dq_initialization.py:66 Extracting mask subarray to match science data INFO stpipe.Detector1Pipeline.dq_init:dq_initialization.py:66 Extracting mask subarray to match science data DEBUG stpipe.Detector1Pipeline.dq_init:reffile_utils.py:332 slice xstart=0, xstop=2048, ystart=896, ystop=1152 DEBUG stpipe.Detector1Pipeline.dq_init:reffile_utils.py:332 slice xstart=0, xstop=2048, ystart=896, ystop=1152 INFO stpipe.Detector1Pipeline.dq_init:step.py:546 Step dq_init done INFO stpipe.Detector1Pipeline.saturation:step.py:430 Step saturation running with args (<RampModel(1, 2, 256, 2048) from nrs1_group_subarray_group_scale.fits>,). INFO stpipe.Detector1Pipeline.saturation:step.py:434 Step saturation parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'n_pix_grow_sat': 1} INFO stpipe.Detector1Pipeline.saturation:saturation_step.py:32 Using SATURATION reference file /grp/crds/cache/references/jwst/jwst_nirspec_saturation_0010.fits DEBUG stpipe.Detector1Pipeline.saturation:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.saturation:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.saturation:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=897, subsize2=256 DEBUG stpipe.Detector1Pipeline.saturation:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=897, subsize2=256 INFO stpipe.Detector1Pipeline.saturation:saturation.py:64 Extracting reference file subarray to match science data INFO stpipe.Detector1Pipeline.saturation:saturation.py:64 Extracting reference file subarray to match science data DEBUG stpipe.Detector1Pipeline.saturation:reffile_utils.py:332 slice xstart=0, xstop=2048, ystart=896, ystop=1152 DEBUG stpipe.Detector1Pipeline.saturation:reffile_utils.py:332 slice xstart=0, xstop=2048, ystart=896, ystop=1152 INFO stpipe.Detector1Pipeline.saturation:saturation.py:114 Detected 11780 saturated pixels INFO stpipe.Detector1Pipeline.saturation:saturation.py:114 Detected 11780 saturated pixels INFO stpipe.Detector1Pipeline.saturation:saturation.py:116 Detected 0 A/D floor pixels INFO stpipe.Detector1Pipeline.saturation:saturation.py:116 Detected 0 A/D floor pixels INFO stpipe.Detector1Pipeline.saturation:step.py:546 Step saturation done INFO stpipe.Detector1Pipeline.ipc:step.py:430 Step ipc running with args (<RampModel(1, 2, 256, 2048) from nrs1_group_subarray_group_scale.fits>,). INFO stpipe.Detector1Pipeline.ipc:step.py:434 Step ipc parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'} INFO stpipe.Detector1Pipeline.ipc:step.py:464 Step skipped. INFO stpipe.Detector1Pipeline.ipc:step.py:546 Step ipc done INFO stpipe.Detector1Pipeline.superbias:step.py:430 Step superbias running with args (<RampModel(1, 2, 256, 2048) from nrs1_group_subarray_group_scale.fits>,). INFO stpipe.Detector1Pipeline.superbias:step.py:434 Step superbias parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'} INFO stpipe.Detector1Pipeline.superbias:superbias_step.py:29 Using SUPERBIAS reference file /grp/crds/cache/references/jwst/jwst_nirspec_superbias_0109.fits DEBUG stpipe.Detector1Pipeline.superbias:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=897, subsize2=256 DEBUG stpipe.Detector1Pipeline.superbias:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=897, subsize2=256 DEBUG stpipe.Detector1Pipeline.superbias:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=897, subsize2=256 DEBUG stpipe.Detector1Pipeline.superbias:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=897, subsize2=256 INFO stpipe.Detector1Pipeline.superbias:step.py:546 Step superbias done INFO stpipe.Detector1Pipeline.refpix:step.py:430 Step refpix running with args (<RampModel(1, 2, 256, 2048) from nrs1_group_subarray_group_scale.fits>,). INFO stpipe.Detector1Pipeline.refpix:step.py:434 Step refpix parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True} DEBUG stpipe.Detector1Pipeline.refpix:reffile_utils.py:40 Input exposure is a subarray readout DEBUG stpipe.Detector1Pipeline.refpix:reffile_utils.py:40 Input exposure is a subarray readout DEBUG stpipe.Detector1Pipeline.refpix:reffile_utils.py:40 Input exposure is a subarray readout DEBUG stpipe.Detector1Pipeline.refpix:reffile_utils.py:40 Input exposure is a subarray readout INFO stpipe.Detector1Pipeline.refpix:reference_pixels.py:339 NIR subarray data INFO stpipe.Detector1Pipeline.refpix:reference_pixels.py:339 NIR subarray data INFO stpipe.Detector1Pipeline.refpix:reference_pixels.py:371 Single readout amplifier used INFO stpipe.Detector1Pipeline.refpix:reference_pixels.py:371 Single readout amplifier used INFO stpipe.Detector1Pipeline.refpix:reference_pixels.py:375 The following parameter is valid for this mode: INFO stpipe.Detector1Pipeline.refpix:reference_pixels.py:375 The following parameter is valid for this mode: INFO stpipe.Detector1Pipeline.refpix:reference_pixels.py:376 odd_even_columns = True INFO stpipe.Detector1Pipeline.refpix:reference_pixels.py:376 odd_even_columns = True INFO stpipe.Detector1Pipeline.refpix:reference_pixels.py:377 The following parameters are not applicable and are ignored: INFO stpipe.Detector1Pipeline.refpix:reference_pixels.py:377 The following parameters are not applicable and are ignored: INFO stpipe.Detector1Pipeline.refpix:reference_pixels.py:378 use_side_ref_pixels = True INFO stpipe.Detector1Pipeline.refpix:reference_pixels.py:378 use_side_ref_pixels = True INFO stpipe.Detector1Pipeline.refpix:reference_pixels.py:379 side_smoothing_length = 11 INFO stpipe.Detector1Pipeline.refpix:reference_pixels.py:379 side_smoothing_length = 11 INFO stpipe.Detector1Pipeline.refpix:reference_pixels.py:380 side_gain = 1.0 INFO stpipe.Detector1Pipeline.refpix:reference_pixels.py:380 side_gain = 1.0 INFO stpipe.Detector1Pipeline.refpix:reference_pixels.py:381 odd_even_rows = False INFO stpipe.Detector1Pipeline.refpix:reference_pixels.py:381 odd_even_rows = False INFO stpipe.Detector1Pipeline.refpix:step.py:546 Step refpix done INFO stpipe.Detector1Pipeline.linearity:step.py:430 Step linearity running with args (<RampModel(1, 2, 256, 2048) from nrs1_group_subarray_group_scale.fits>,). INFO stpipe.Detector1Pipeline.linearity:step.py:434 Step linearity parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'} INFO stpipe.Detector1Pipeline.linearity:linearity_step.py:25 Using Linearity reference file /grp/crds/cache/references/jwst/jwst_nirspec_linearity_0008.fits DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=897, subsize2=256 DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=897, subsize2=256 DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:332 slice xstart=0, xstop=2048, ystart=896, ystop=1152 DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:332 slice xstart=0, xstop=2048, ystart=896, ystop=1152 INFO stpipe.Detector1Pipeline.linearity:step.py:546 Step linearity done INFO stpipe.Detector1Pipeline.dark_current:step.py:430 Step dark_current running with args (<RampModel(1, 2, 256, 2048) from nrs1_group_subarray_group_scale.fits>,). INFO stpipe.Detector1Pipeline.dark_current:step.py:434 Step dark_current parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'dark_output': None} INFO stpipe.Detector1Pipeline.dark_current:dark_current_step.py:30 Using DARK reference file /grp/crds/cache/references/jwst/jwst_nirspec_dark_0078.fits INFO stpipe.Detector1Pipeline.dark_current:dark_sub.py:88 Science data nints=1, ngroups=2, nframes=3, groupgap=0 INFO stpipe.Detector1Pipeline.dark_current:dark_sub.py:88 Science data nints=1, ngroups=2, nframes=3, groupgap=0 INFO stpipe.Detector1Pipeline.dark_current:dark_sub.py:92 Dark data nints=1, ngroups=10, nframes=1, groupgap=0 INFO stpipe.Detector1Pipeline.dark_current:dark_sub.py:92 Dark data nints=1, ngroups=10, nframes=1, groupgap=0 DEBUG stpipe.Detector1Pipeline.dark_current:dark_sub.py:224 average dark frames 1 to 3 DEBUG stpipe.Detector1Pipeline.dark_current:dark_sub.py:224 average dark frames 1 to 3 DEBUG stpipe.Detector1Pipeline.dark_current:dark_sub.py:224 average dark frames 4 to 6 DEBUG stpipe.Detector1Pipeline.dark_current:dark_sub.py:224 average dark frames 4 to 6 DEBUG stpipe.Detector1Pipeline.dark_current:dark_sub.py:348 subtract_dark: nints=1, ngroups=2, size=256,2048 DEBUG stpipe.Detector1Pipeline.dark_current:dark_sub.py:348 subtract_dark: nints=1, ngroups=2, size=256,2048 INFO stpipe.Detector1Pipeline.dark_current:step.py:546 Step dark_current done INFO stpipe.Detector1Pipeline.jump:step.py:430 Step jump running with args (<RampModel(1, 2, 256, 2048) from nrs1_group_subarray_group_scale.fits>,). INFO stpipe.Detector1Pipeline.jump:step.py:434 Step jump parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'rejection_threshold': 4.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0, 'after_jump_flag_dn1': 0.0, 'after_jump_flag_time1': 0.0, 'after_jump_flag_dn2': 0.0, 'after_jump_flag_time2': 0.0} WARNING stpipe.Detector1Pipeline.jump:jump_step.py:42 Cannot apply jump detection when NGROUPS<=2; WARNING stpipe.Detector1Pipeline.jump:jump_step.py:43 Jump step will be skipped INFO stpipe.Detector1Pipeline.jump:step.py:546 Step jump done INFO stpipe.Detector1Pipeline.ramp_fit:step.py:430 Step ramp_fit running with args (<RampModel(1, 2, 256, 2048) from nrs1_group_subarray_group_scale.fits>,). INFO stpipe.Detector1Pipeline.ramp_fit:step.py:434 Step ramp_fit parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'int_name': '', 'save_opt': False, 'opt_name': '', 'suppress_one_group': True, 'maximum_cores': 'none'} INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:213 Using READNOISE reference file: /grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0006.fits INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:213 Using READNOISE reference file: /grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0006.fits INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:214 Using GAIN reference file: /grp/crds/cache/references/jwst/jwst_nirspec_gain_0019.fits INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:214 Using GAIN reference file: /grp/crds/cache/references/jwst/jwst_nirspec_gain_0019.fits DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=897, subsize2=256 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=897, subsize2=256 INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:54 Extracting gain subarray to match science data INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:54 Extracting gain subarray to match science data DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:258 science xstart=1, xsize=2048, ystart=897, ysize=256 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:258 science xstart=1, xsize=2048, ystart=897, ysize=256 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:266 reference xstart=1, xsize=2048, ystart=1, ysize=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:266 reference xstart=1, xsize=2048, ystart=1, ysize=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:274 slice xstart=0, xstop=2048, ystart=896, ystop=1152 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:274 slice xstart=0, xstop=2048, ystart=896, ystop=1152 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=897, subsize2=256 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=897, subsize2=256 INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:60 Extracting readnoise subarray to match science data INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:60 Extracting readnoise subarray to match science data DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:258 science xstart=1, xsize=2048, ystart=897, ysize=256 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:258 science xstart=1, xsize=2048, ystart=897, ysize=256 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:266 reference xstart=1, xsize=2048, ystart=1, ysize=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:266 reference xstart=1, xsize=2048, ystart=1, ysize=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:274 slice xstart=0, xstop=2048, ystart=896, ystop=1152 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:274 slice xstart=0, xstop=2048, ystart=896, ystop=1152 INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:231 Using algorithm = ols INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:231 Using algorithm = ols INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:232 Using weighting = optimal INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:232 Using weighting = optimal DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1235 Missing keyword DRPFRMS1, so setting to default value of 0 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1235 Missing keyword DRPFRMS1, so setting to default value of 0 DEBUG stpipe.Detector1Pipeline.ramp_fit:utils.py:1250 The number of pixels having insufficient data DEBUG stpipe.Detector1Pipeline.ramp_fit:utils.py:1250 The number of pixels having insufficient data DEBUG stpipe.Detector1Pipeline.ramp_fit:utils.py:1251 due to excessive CRs or saturation 14122: DEBUG stpipe.Detector1Pipeline.ramp_fit:utils.py:1251 due to excessive CRs or saturation 14122: DEBUG stpipe.Detector1Pipeline.ramp_fit:utils.py:1252 Count rates - min, mean, max, std: 0.000000, 222.703949, 1756.772583, 198.759323 DEBUG stpipe.Detector1Pipeline.ramp_fit:utils.py:1252 Count rates - min, mean, max, std: 0.000000, 222.703949, 1756.772583, 198.759323 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1377 Instrument: NIRSPEC DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1377 Instrument: NIRSPEC DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1378 Number of pixels in 2D array: 524288 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1378 Number of pixels in 2D array: 524288 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1379 Shape of 2D image: (256, 2048) DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1379 Shape of 2D image: (256, 2048) DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1380 Shape of data cube: (2, 256, 2048) DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1380 Shape of data cube: (2, 256, 2048) DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1381 Buffer size (bytes): 307200000 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1381 Buffer size (bytes): 307200000 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1382 Number of rows per buffer: 256 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1382 Number of rows per buffer: 256 INFO stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1383 Number of groups per integration: 2 INFO stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1383 Number of groups per integration: 2 INFO stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1384 Number of integrations: 1 INFO stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1384 Number of integrations: 1 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1385 The execution time in seconds: 0.622898 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1385 The execution time in seconds: 0.622898 INFO stpipe.Detector1Pipeline.ramp_fit:step.py:546 Step ramp_fit done INFO stpipe.Detector1Pipeline.gain_scale:step.py:430 Step gain_scale running with args (<ImageModel(256, 2048) from nrs1_group_subarray_group_scale.fits>,). INFO stpipe.Detector1Pipeline.gain_scale:step.py:434 Step gain_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'gain_scale', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'} INFO stpipe.Detector1Pipeline.gain_scale:gain_scale.py:32 Rescaling by 1.95 INFO stpipe.Detector1Pipeline.gain_scale:gain_scale.py:32 Rescaling by 1.95 INFO stpipe.Detector1Pipeline.gain_scale:step.py:546 Step gain_scale done INFO stpipe.Detector1Pipeline.gain_scale:step.py:430 Step gain_scale running with args (<CubeModel(1, 256, 2048) from nrs1_group_subarray_group_scale.fits>,). INFO stpipe.Detector1Pipeline.gain_scale:step.py:434 Step gain_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'gain_scaleints', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'} INFO stpipe.Detector1Pipeline.gain_scale:gain_scale.py:32 Rescaling by 1.95 INFO stpipe.Detector1Pipeline.gain_scale:gain_scale.py:32 Rescaling by 1.95 INFO stpipe.Detector1Pipeline.gain_scale:step.py:546 Step gain_scale done INFO stpipe.Detector1Pipeline:step.py:1016 Saved model in nrs1_group_subarray_rateints.fits INFO stpipe.Detector1Pipeline:calwebb_detector1.py:153 ... ending calwebb_detector1 INFO stpipe.Detector1Pipeline:calwebb_detector1.py:153 ... ending calwebb_detector1 INFO stpipe.Detector1Pipeline:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Detector1Pipeline:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Detector1Pipeline:step.py:1016 Saved model in nrs1_group_subarray_rate.fits INFO stpipe.Detector1Pipeline:step.py:546 Step Detector1Pipeline done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_subarray.py::test_nirspec_detector1[rate] | 0.34 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_verify.py::test_verify_detector1[dq_init] | 48.32 | |
|
-----------------------------Captured stderr setup------------------------------ 2022-10-06 05:10:29,143 - stpipe - INFO - PARS-DETECTOR1PIPELINE parameters found: /grp/crds/cache/references/jwst/jwst_nirspec_pars-detector1pipeline_0004.asdf 2022-10-06 05:10:29,171 - stpipe.Detector1Pipeline - INFO - Detector1Pipeline instance created. 2022-10-06 05:10:29,172 - stpipe.Detector1Pipeline.group_scale - INFO - GroupScaleStep instance created. 2022-10-06 05:10:29,173 - stpipe.Detector1Pipeline.dq_init - INFO - DQInitStep instance created. 2022-10-06 05:10:29,173 - stpipe.Detector1Pipeline.saturation - INFO - SaturationStep instance created. 2022-10-06 05:10:29,174 - stpipe.Detector1Pipeline.ipc - INFO - IPCStep instance created. 2022-10-06 05:10:29,175 - stpipe.Detector1Pipeline.superbias - INFO - SuperBiasStep instance created. 2022-10-06 05:10:29,176 - stpipe.Detector1Pipeline.refpix - INFO - RefPixStep instance created. 2022-10-06 05:10:29,177 - stpipe.Detector1Pipeline.rscd - INFO - RscdStep instance created. 2022-10-06 05:10:29,178 - stpipe.Detector1Pipeline.firstframe - INFO - FirstFrameStep instance created. 2022-10-06 05:10:29,178 - stpipe.Detector1Pipeline.lastframe - INFO - LastFrameStep instance created. 2022-10-06 05:10:29,179 - stpipe.Detector1Pipeline.linearity - INFO - LinearityStep instance created. 2022-10-06 05:10:29,180 - stpipe.Detector1Pipeline.dark_current - INFO - DarkCurrentStep instance created. 2022-10-06 05:10:29,180 - stpipe.Detector1Pipeline.reset - INFO - ResetStep instance created. 2022-10-06 05:10:29,181 - stpipe.Detector1Pipeline.persistence - INFO - PersistenceStep instance created. 2022-10-06 05:10:29,182 - stpipe.Detector1Pipeline.jump - INFO - JumpStep instance created. 2022-10-06 05:10:29,183 - stpipe.Detector1Pipeline.ramp_fit - INFO - RampFitStep instance created. 2022-10-06 05:10:29,184 - stpipe.Detector1Pipeline.gain_scale - INFO - GainScaleStep instance created. 2022-10-06 05:10:29,506 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_uncal.fits',). 2022-10-06 05:10:29,515 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'save_calibrated_ramp': False, 'steps': {'group_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'dq_init': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'saturation': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'n_pix_grow_sat': 1}, 'ipc': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'superbias': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'refpix': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True}, 'rscd': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'type': 'baseline'}, 'firstframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'lastframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'linearity': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'dark_current': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'dark_output': None}, 'reset': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'persistence': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'input_trapsfilled': '', 'flag_pers_cutoff': 40.0, 'save_persistence': False, 'save_trapsfilled': True}, 'jump': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'rejection_threshold': 4.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0, 'after_jump_flag_dn1': 0.0, 'after_jump_flag_time1': 0.0, 'after_jump_flag_dn2': 0.0, 'after_jump_flag_time2': 0.0}, 'ramp_fit': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'int_name': '', 'save_opt': False, 'opt_name': '', 'suppress_one_group': True, 'maximum_cores': 'none'}, 'gain_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}}} 2022-10-06 05:10:29,761 - stpipe.Detector1Pipeline - INFO - Prefetching reference files for dataset: 'nrs_verify_nrs1_uncal.fits' reftypes = ['dark', 'gain', 'linearity', 'mask', 'persat', 'readnoise', 'refpix', 'reset', 'rscd', 'saturation', 'superbias', 'trapdensity', 'trappars'] 2022-10-06 05:10:29,775 - stpipe.Detector1Pipeline - INFO - Prefetch for DARK reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dark_0088.fits'. 2022-10-06 05:10:29,776 - stpipe.Detector1Pipeline - INFO - Prefetch for GAIN reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_gain_0023.fits'. 2022-10-06 05:10:29,777 - stpipe.Detector1Pipeline - INFO - Prefetch for LINEARITY reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_linearity_0022.fits'. 2022-10-06 05:10:29,778 - stpipe.Detector1Pipeline - INFO - Prefetch for MASK reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_mask_0010.fits'. 2022-10-06 05:10:29,780 - stpipe.Detector1Pipeline - INFO - Prefetch for PERSAT reference file is 'N/A'. 2022-10-06 05:10:29,780 - stpipe.Detector1Pipeline - INFO - Prefetch for READNOISE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0018.fits'. 2022-10-06 05:10:29,781 - stpipe.Detector1Pipeline - INFO - Prefetch for REFPIX reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_refpix_0019.fits'. 2022-10-06 05:10:29,782 - stpipe.Detector1Pipeline - INFO - Prefetch for RESET reference file is 'N/A'. 2022-10-06 05:10:29,782 - stpipe.Detector1Pipeline - INFO - Prefetch for RSCD reference file is 'N/A'. 2022-10-06 05:10:29,783 - stpipe.Detector1Pipeline - INFO - Prefetch for SATURATION reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_saturation_0027.fits'. 2022-10-06 05:10:29,784 - stpipe.Detector1Pipeline - INFO - Prefetch for SUPERBIAS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_superbias_0117.fits'. 2022-10-06 05:10:29,786 - stpipe.Detector1Pipeline - INFO - Prefetch for TRAPDENSITY reference file is 'N/A'. 2022-10-06 05:10:29,786 - stpipe.Detector1Pipeline - INFO - Prefetch for TRAPPARS reference file is 'N/A'. 2022-10-06 05:10:29,786 - stpipe.Detector1Pipeline - INFO - Starting calwebb_detector1 ... 2022-10-06 05:10:30,361 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_uncal.fits>,). 2022-10-06 05:10:30,362 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} 2022-10-06 05:10:30,473 - stpipe.Detector1Pipeline.group_scale - INFO - NFRAMES and FRMDIVSR are equal; correction not needed 2022-10-06 05:10:30,473 - stpipe.Detector1Pipeline.group_scale - INFO - Step will be skipped 2022-10-06 05:10:30,476 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale done 2022-10-06 05:10:30,792 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_uncal.fits>,). 2022-10-06 05:10:30,793 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} 2022-10-06 05:10:30,817 - stpipe.Detector1Pipeline.dq_init - INFO - Using MASK reference file /grp/crds/cache/references/jwst/jwst_nirspec_mask_0010.fits 2022-10-06 05:10:31,713 - stpipe.Detector1Pipeline.dq_init - INFO - Saved model in nrs_verify_nrs1_dq_init.fits 2022-10-06 05:10:31,713 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init done 2022-10-06 05:10:32,057 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_dq_init.fits>,). 2022-10-06 05:10:32,058 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'n_pix_grow_sat': 1} 2022-10-06 05:10:32,082 - stpipe.Detector1Pipeline.saturation - INFO - Using SATURATION reference file /grp/crds/cache/references/jwst/jwst_nirspec_saturation_0027.fits 2022-10-06 05:10:33,261 - stpipe.Detector1Pipeline.saturation - INFO - Detected 690721 saturated pixels 2022-10-06 05:10:33,276 - stpipe.Detector1Pipeline.saturation - INFO - Detected 128 A/D floor pixels 2022-10-06 05:10:33,553 - stpipe.Detector1Pipeline.saturation - INFO - Saved model in nrs_verify_nrs1_saturation.fits 2022-10-06 05:10:33,553 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation done 2022-10-06 05:10:33,846 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_saturation.fits>,). 2022-10-06 05:10:33,847 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} 2022-10-06 05:10:33,847 - stpipe.Detector1Pipeline.ipc - INFO - Step skipped. 2022-10-06 05:10:33,849 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc done 2022-10-06 05:10:34,135 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_saturation.fits>,). 2022-10-06 05:10:34,136 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} 2022-10-06 05:10:34,160 - stpipe.Detector1Pipeline.superbias - INFO - Using SUPERBIAS reference file /grp/crds/cache/references/jwst/jwst_nirspec_superbias_0117.fits 2022-10-06 05:10:35,990 - stpipe.Detector1Pipeline.superbias - INFO - Saved model in nrs_verify_nrs1_superbias.fits 2022-10-06 05:10:35,990 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias done 2022-10-06 05:10:36,276 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_superbias.fits>,). 2022-10-06 05:10:36,277 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True} 2022-10-06 05:10:36,301 - stpipe.Detector1Pipeline.refpix - INFO - Using refpix reference file: /grp/crds/cache/references/jwst/jwst_nirspec_refpix_0019.fits 2022-10-06 05:10:36,938 - stpipe.Detector1Pipeline.refpix - INFO - Working on integration 1 2022-10-06 05:10:45,114 - stpipe.Detector1Pipeline.refpix - INFO - Saved model in nrs_verify_nrs1_refpix.fits 2022-10-06 05:10:45,114 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix done 2022-10-06 05:10:45,578 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_refpix.fits>,). 2022-10-06 05:10:45,579 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} 2022-10-06 05:10:45,607 - stpipe.Detector1Pipeline.linearity - INFO - Using Linearity reference file /grp/crds/cache/references/jwst/jwst_nirspec_linearity_0022.fits 2022-10-06 05:10:46,359 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword BAD_LIN_CORR does not correspond to an existing DQ mnemonic, so will be ignored 2022-10-06 05:10:46,880 - stpipe.Detector1Pipeline.linearity - INFO - Saved model in nrs_verify_nrs1_linearity.fits 2022-10-06 05:10:46,881 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity done 2022-10-06 05:10:47,187 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_linearity.fits>,). 2022-10-06 05:10:47,188 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'dark_output': None} 2022-10-06 05:10:47,245 - stpipe.Detector1Pipeline.dark_current - INFO - Using DARK reference file /grp/crds/cache/references/jwst/jwst_nirspec_dark_0088.fits 2022-10-06 05:11:03,863 - stpipe.Detector1Pipeline.dark_current - INFO - Science data nints=1, ngroups=2, nframes=1, groupgap=0 2022-10-06 05:11:03,864 - stpipe.Detector1Pipeline.dark_current - INFO - Dark data nints=1, ngroups=65, nframes=1, groupgap=0 2022-10-06 05:11:04,564 - stpipe.Detector1Pipeline.dark_current - INFO - Saved model in nrs_verify_nrs1_dark_current.fits 2022-10-06 05:11:04,564 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current done 2022-10-06 05:11:04,866 - stpipe.Detector1Pipeline.jump - INFO - Step jump running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_dark_current.fits>,). 2022-10-06 05:11:04,868 - stpipe.Detector1Pipeline.jump - INFO - Step jump parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'rejection_threshold': 4.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0, 'after_jump_flag_dn1': 0.0, 'after_jump_flag_time1': 0.0, 'after_jump_flag_dn2': 0.0, 'after_jump_flag_time2': 0.0} 2022-10-06 05:11:04,889 - stpipe.Detector1Pipeline.jump - WARNING - Cannot apply jump detection when NGROUPS<=2; 2022-10-06 05:11:04,889 - stpipe.Detector1Pipeline.jump - WARNING - Jump step will be skipped 2022-10-06 05:11:05,145 - stpipe.Detector1Pipeline.jump - INFO - Saved model in nrs_verify_nrs1_jump.fits 2022-10-06 05:11:05,145 - stpipe.Detector1Pipeline.jump - INFO - Step jump done 2022-10-06 05:11:05,431 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_jump.fits>,). 2022-10-06 05:11:05,433 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'int_name': '', 'save_opt': False, 'opt_name': '', 'suppress_one_group': True, 'maximum_cores': 'none'} 2022-10-06 05:11:05,533 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using READNOISE reference file: /grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0018.fits 2022-10-06 05:11:05,533 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using GAIN reference file: /grp/crds/cache/references/jwst/jwst_nirspec_gain_0023.fits 2022-10-06 05:11:05,921 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using algorithm = ols 2022-10-06 05:11:05,922 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using weighting = optimal 2022-10-06 05:11:13,406 - stpipe.Detector1Pipeline.ramp_fit - INFO - Number of groups per integration: 2 2022-10-06 05:11:13,406 - stpipe.Detector1Pipeline.ramp_fit - INFO - Number of integrations: 1 2022-10-06 05:11:13,594 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit done 2022-10-06 05:11:13,930 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<ImageModel(2048, 2048) from nrs_verify_nrs1_jump.fits>,). 2022-10-06 05:11:13,931 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'gain_scale', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} 2022-10-06 05:11:14,000 - stpipe.Detector1Pipeline.gain_scale - INFO - Rescaling by 1.0 2022-10-06 05:11:14,017 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done 2022-10-06 05:11:14,304 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<CubeModel(1, 2048, 2048) from nrs_verify_nrs1_jump.fits>,). 2022-10-06 05:11:14,305 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'gain_scaleints', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} 2022-10-06 05:11:14,377 - stpipe.Detector1Pipeline.gain_scale - INFO - Rescaling by 1.0 2022-10-06 05:11:14,394 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done 2022-10-06 05:11:14,545 - stpipe.Detector1Pipeline - INFO - Saved model in nrs_verify_nrs1_rateints.fits 2022-10-06 05:11:14,545 - stpipe.Detector1Pipeline - INFO - ... ending calwebb_detector1 2022-10-06 05:11:14,545 - stpipe.Detector1Pipeline - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 05:11:14,684 - stpipe.Detector1Pipeline - INFO - Saved model in nrs_verify_nrs1_rate.fits 2022-10-06 05:11:14,685 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline done -------------------------------Captured log setup------------------------------- INFO stpipe:pipeline.py:208 PARS-DETECTOR1PIPELINE parameters found: /grp/crds/cache/references/jwst/jwst_nirspec_pars-detector1pipeline_0004.asdf INFO stpipe.Detector1Pipeline:step.py:366 Detector1Pipeline instance created. INFO stpipe.Detector1Pipeline.group_scale:step.py:366 GroupScaleStep instance created. INFO stpipe.Detector1Pipeline.dq_init:step.py:366 DQInitStep instance created. INFO stpipe.Detector1Pipeline.saturation:step.py:366 SaturationStep instance created. INFO stpipe.Detector1Pipeline.ipc:step.py:366 IPCStep instance created. INFO stpipe.Detector1Pipeline.superbias:step.py:366 SuperBiasStep instance created. INFO stpipe.Detector1Pipeline.refpix:step.py:366 RefPixStep instance created. INFO stpipe.Detector1Pipeline.rscd:step.py:366 RscdStep instance created. INFO stpipe.Detector1Pipeline.firstframe:step.py:366 FirstFrameStep instance created. INFO stpipe.Detector1Pipeline.lastframe:step.py:366 LastFrameStep instance created. INFO stpipe.Detector1Pipeline.linearity:step.py:366 LinearityStep instance created. INFO stpipe.Detector1Pipeline.dark_current:step.py:366 DarkCurrentStep instance created. INFO stpipe.Detector1Pipeline.reset:step.py:366 ResetStep instance created. INFO stpipe.Detector1Pipeline.persistence:step.py:366 PersistenceStep instance created. INFO stpipe.Detector1Pipeline.jump:step.py:366 JumpStep instance created. INFO stpipe.Detector1Pipeline.ramp_fit:step.py:366 RampFitStep instance created. INFO stpipe.Detector1Pipeline.gain_scale:step.py:366 GainScaleStep instance created. INFO stpipe.Detector1Pipeline:step.py:430 Step Detector1Pipeline running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_uncal.fits',). INFO stpipe.Detector1Pipeline:step.py:434 Step Detector1Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'save_calibrated_ramp': False, 'steps': {'group_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'dq_init': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'saturation': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'n_pix_grow_sat': 1}, 'ipc': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'superbias': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'refpix': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True}, 'rscd': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'type': 'baseline'}, 'firstframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'lastframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'linearity': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'dark_current': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'dark_output': None}, 'reset': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'persistence': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'input_trapsfilled': '', 'flag_pers_cutoff': 40.0, 'save_persistence': False, 'save_trapsfilled': True}, 'jump': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'rejection_threshold': 4.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0, 'after_jump_flag_dn1': 0.0, 'after_jump_flag_time1': 0.0, 'after_jump_flag_dn2': 0.0, 'after_jump_flag_time2': 0.0}, 'ramp_fit': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'int_name': '', 'save_opt': False, 'opt_name': '', 'suppress_one_group': True, 'maximum_cores': 'none'}, 'gain_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}}} INFO stpipe.Detector1Pipeline:pipeline.py:358 Prefetching reference files for dataset: 'nrs_verify_nrs1_uncal.fits' reftypes = ['dark', 'gain', 'linearity', 'mask', 'persat', 'readnoise', 'refpix', 'reset', 'rscd', 'saturation', 'superbias', 'trapdensity', 'trappars'] INFO stpipe.Detector1Pipeline:pipeline.py:366 Prefetch for DARK reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dark_0088.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:366 Prefetch for GAIN reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_gain_0023.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:366 Prefetch for LINEARITY reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_linearity_0022.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:366 Prefetch for MASK reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_mask_0010.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:366 Prefetch for PERSAT reference file is 'N/A'. INFO stpipe.Detector1Pipeline:pipeline.py:366 Prefetch for READNOISE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0018.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:366 Prefetch for REFPIX reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_refpix_0019.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:366 Prefetch for RESET reference file is 'N/A'. INFO stpipe.Detector1Pipeline:pipeline.py:366 Prefetch for RSCD reference file is 'N/A'. INFO stpipe.Detector1Pipeline:pipeline.py:366 Prefetch for SATURATION reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_saturation_0027.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:366 Prefetch for SUPERBIAS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_superbias_0117.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:366 Prefetch for TRAPDENSITY reference file is 'N/A'. INFO stpipe.Detector1Pipeline:pipeline.py:366 Prefetch for TRAPPARS reference file is 'N/A'. INFO stpipe.Detector1Pipeline:calwebb_detector1.py:68 Starting calwebb_detector1 ... INFO stpipe.Detector1Pipeline:calwebb_detector1.py:68 Starting calwebb_detector1 ... DEBUG stpipe.Detector1Pipeline:calwebb_detector1.py:102 Processing a Near-IR exposure DEBUG stpipe.Detector1Pipeline:calwebb_detector1.py:102 Processing a Near-IR exposure INFO stpipe.Detector1Pipeline.group_scale:step.py:430 Step group_scale running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_uncal.fits>,). INFO stpipe.Detector1Pipeline.group_scale:step.py:434 Step group_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} INFO stpipe.Detector1Pipeline.group_scale:group_scale_step.py:51 NFRAMES and FRMDIVSR are equal; correction not needed INFO stpipe.Detector1Pipeline.group_scale:group_scale_step.py:52 Step will be skipped INFO stpipe.Detector1Pipeline.group_scale:step.py:546 Step group_scale done INFO stpipe.Detector1Pipeline.dq_init:step.py:430 Step dq_init running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_uncal.fits>,). INFO stpipe.Detector1Pipeline.dq_init:step.py:434 Step dq_init parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} INFO stpipe.Detector1Pipeline.dq_init:dq_init_step.py:65 Using MASK reference file /grp/crds/cache/references/jwst/jwst_nirspec_mask_0010.fits DEBUG stpipe.Detector1Pipeline.dq_init:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.dq_init:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.dq_init:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.dq_init:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 INFO stpipe.Detector1Pipeline.dq_init:step.py:1016 Saved model in nrs_verify_nrs1_dq_init.fits INFO stpipe.Detector1Pipeline.dq_init:step.py:546 Step dq_init done INFO stpipe.Detector1Pipeline.saturation:step.py:430 Step saturation running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_dq_init.fits>,). INFO stpipe.Detector1Pipeline.saturation:step.py:434 Step saturation parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'n_pix_grow_sat': 1} INFO stpipe.Detector1Pipeline.saturation:saturation_step.py:32 Using SATURATION reference file /grp/crds/cache/references/jwst/jwst_nirspec_saturation_0027.fits DEBUG stpipe.Detector1Pipeline.saturation:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.saturation:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.saturation:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.saturation:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 INFO stpipe.Detector1Pipeline.saturation:saturation.py:208 Detected 690721 saturated pixels INFO stpipe.Detector1Pipeline.saturation:saturation.py:208 Detected 690721 saturated pixels INFO stpipe.Detector1Pipeline.saturation:saturation.py:210 Detected 128 A/D floor pixels INFO stpipe.Detector1Pipeline.saturation:saturation.py:210 Detected 128 A/D floor pixels INFO stpipe.Detector1Pipeline.saturation:step.py:1016 Saved model in nrs_verify_nrs1_saturation.fits INFO stpipe.Detector1Pipeline.saturation:step.py:546 Step saturation done INFO stpipe.Detector1Pipeline.ipc:step.py:430 Step ipc running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_saturation.fits>,). INFO stpipe.Detector1Pipeline.ipc:step.py:434 Step ipc parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} INFO stpipe.Detector1Pipeline.ipc:step.py:464 Step skipped. INFO stpipe.Detector1Pipeline.ipc:step.py:546 Step ipc done INFO stpipe.Detector1Pipeline.superbias:step.py:430 Step superbias running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_saturation.fits>,). INFO stpipe.Detector1Pipeline.superbias:step.py:434 Step superbias parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} INFO stpipe.Detector1Pipeline.superbias:superbias_step.py:29 Using SUPERBIAS reference file /grp/crds/cache/references/jwst/jwst_nirspec_superbias_0117.fits DEBUG stpipe.Detector1Pipeline.superbias:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.superbias:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.superbias:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.superbias:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 INFO stpipe.Detector1Pipeline.superbias:step.py:1016 Saved model in nrs_verify_nrs1_superbias.fits INFO stpipe.Detector1Pipeline.superbias:step.py:546 Step superbias done INFO stpipe.Detector1Pipeline.refpix:step.py:430 Step refpix running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_superbias.fits>,). INFO stpipe.Detector1Pipeline.refpix:step.py:434 Step refpix parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True} INFO stpipe.Detector1Pipeline.refpix:refpix_step.py:38 Using refpix reference file: /grp/crds/cache/references/jwst/jwst_nirspec_refpix_0019.fits DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:335 output 1 odd_even 1 mask 1048608 DQ bits [5, 20] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:335 output 1 odd_even 1 mask 1048608 DQ bits [5, 20] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 748 749 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 748 749 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 1048 1049 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 1048 1049 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:335 output 1 odd_even 2 mask 0 DQ bits [] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:335 output 1 odd_even 2 mask 0 DQ bits [] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:335 output 2 odd_even 1 mask 8464 DQ bits [18, 23, 27] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:335 output 2 odd_even 1 mask 8464 DQ bits [18, 23, 27] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 1650 1651 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 1650 1651 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 1750 1751 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 1750 1751 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 1830 1831 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 1830 1831 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:335 output 2 odd_even 2 mask 8 DQ bits [28] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:335 output 2 odd_even 2 mask 8 DQ bits [28] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 1848 1849 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 1848 1849 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:335 output 3 odd_even 1 mask 16448 DQ bits [6, 14] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:335 output 3 odd_even 1 mask 16448 DQ bits [6, 14] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 2048 2049 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 2048 2049 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 2208 2209 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 2208 2209 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:335 output 3 odd_even 2 mask 33554944 DQ bits [9, 25] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:335 output 3 odd_even 2 mask 33554944 DQ bits [9, 25] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 2110 2111 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 2110 2111 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 2430 2431 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 2430 2431 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:335 output 4 odd_even 1 mask 8 DQ bits [28] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:335 output 4 odd_even 1 mask 8 DQ bits [28] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 3130 3131 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 3130 3131 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:335 output 4 odd_even 2 mask 32897 DQ bits [16, 24, 31] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:335 output 4 odd_even 2 mask 32897 DQ bits [16, 24, 31] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 2888 2889 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 2888 2889 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 3048 3049 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 3048 3049 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 3188 3189 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:340 bad interleaved reference at pixels 3188 3189 INFO stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:143 Working on integration 1 INFO stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:143 Working on integration 1 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:574 processing sector 1 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:574 processing sector 1 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:574 processing sector 2 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:574 processing sector 2 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:574 processing sector 3 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:574 processing sector 3 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:574 processing sector 4 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:574 processing sector 4 INFO stpipe.Detector1Pipeline.refpix:step.py:1016 Saved model in nrs_verify_nrs1_refpix.fits INFO stpipe.Detector1Pipeline.refpix:step.py:546 Step refpix done INFO stpipe.Detector1Pipeline.linearity:step.py:430 Step linearity running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_refpix.fits>,). INFO stpipe.Detector1Pipeline.linearity:step.py:434 Step linearity parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} INFO stpipe.Detector1Pipeline.linearity:linearity_step.py:25 Using Linearity reference file /grp/crds/cache/references/jwst/jwst_nirspec_linearity_0022.fits WARNING stpipe.Detector1Pipeline.linearity:dynamicdq.py:42 Keyword BAD_LIN_CORR does not correspond to an existing DQ mnemonic, so will be ignored WARNING stpipe.Detector1Pipeline.linearity:dynamicdq.py:42 Keyword BAD_LIN_CORR does not correspond to an existing DQ mnemonic, so will be ignored DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 INFO stpipe.Detector1Pipeline.linearity:step.py:1016 Saved model in nrs_verify_nrs1_linearity.fits INFO stpipe.Detector1Pipeline.linearity:step.py:546 Step linearity done INFO stpipe.Detector1Pipeline.dark_current:step.py:430 Step dark_current running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_linearity.fits>,). INFO stpipe.Detector1Pipeline.dark_current:step.py:434 Step dark_current parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'dark_output': None} INFO stpipe.Detector1Pipeline.dark_current:dark_current_step.py:30 Using DARK reference file /grp/crds/cache/references/jwst/jwst_nirspec_dark_0088.fits INFO stpipe.Detector1Pipeline.dark_current:dark_sub.py:88 Science data nints=1, ngroups=2, nframes=1, groupgap=0 INFO stpipe.Detector1Pipeline.dark_current:dark_sub.py:88 Science data nints=1, ngroups=2, nframes=1, groupgap=0 INFO stpipe.Detector1Pipeline.dark_current:dark_sub.py:92 Dark data nints=1, ngroups=65, nframes=1, groupgap=0 INFO stpipe.Detector1Pipeline.dark_current:dark_sub.py:92 Dark data nints=1, ngroups=65, nframes=1, groupgap=0 DEBUG stpipe.Detector1Pipeline.dark_current:dark_sub.py:348 subtract_dark: nints=1, ngroups=2, size=2048,2048 DEBUG stpipe.Detector1Pipeline.dark_current:dark_sub.py:348 subtract_dark: nints=1, ngroups=2, size=2048,2048 INFO stpipe.Detector1Pipeline.dark_current:step.py:1016 Saved model in nrs_verify_nrs1_dark_current.fits INFO stpipe.Detector1Pipeline.dark_current:step.py:546 Step dark_current done INFO stpipe.Detector1Pipeline.jump:step.py:430 Step jump running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_dark_current.fits>,). INFO stpipe.Detector1Pipeline.jump:step.py:434 Step jump parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'rejection_threshold': 4.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0, 'after_jump_flag_dn1': 0.0, 'after_jump_flag_time1': 0.0, 'after_jump_flag_dn2': 0.0, 'after_jump_flag_time2': 0.0} WARNING stpipe.Detector1Pipeline.jump:jump_step.py:42 Cannot apply jump detection when NGROUPS<=2; WARNING stpipe.Detector1Pipeline.jump:jump_step.py:43 Jump step will be skipped INFO stpipe.Detector1Pipeline.jump:step.py:1016 Saved model in nrs_verify_nrs1_jump.fits INFO stpipe.Detector1Pipeline.jump:step.py:546 Step jump done INFO stpipe.Detector1Pipeline.ramp_fit:step.py:430 Step ramp_fit running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_jump.fits>,). INFO stpipe.Detector1Pipeline.ramp_fit:step.py:434 Step ramp_fit parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'int_name': '', 'save_opt': False, 'opt_name': '', 'suppress_one_group': True, 'maximum_cores': 'none'} INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:213 Using READNOISE reference file: /grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0018.fits INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:213 Using READNOISE reference file: /grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0018.fits INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:214 Using GAIN reference file: /grp/crds/cache/references/jwst/jwst_nirspec_gain_0023.fits INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:214 Using GAIN reference file: /grp/crds/cache/references/jwst/jwst_nirspec_gain_0023.fits DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:231 Using algorithm = ols INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:231 Using algorithm = ols INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:232 Using weighting = optimal INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:232 Using weighting = optimal DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1235 Missing keyword DRPFRMS1, so setting to default value of 0 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1235 Missing keyword DRPFRMS1, so setting to default value of 0 DEBUG stpipe.Detector1Pipeline.ramp_fit:utils.py:1250 The number of pixels having insufficient data DEBUG stpipe.Detector1Pipeline.ramp_fit:utils.py:1250 The number of pixels having insufficient data DEBUG stpipe.Detector1Pipeline.ramp_fit:utils.py:1251 due to excessive CRs or saturation 729192: DEBUG stpipe.Detector1Pipeline.ramp_fit:utils.py:1251 due to excessive CRs or saturation 729192: DEBUG stpipe.Detector1Pipeline.ramp_fit:utils.py:1252 Count rates - min, mean, max, std: -26394787840.000000, -6732.549316, 369509216.000000, 12928614.000000 DEBUG stpipe.Detector1Pipeline.ramp_fit:utils.py:1252 Count rates - min, mean, max, std: -26394787840.000000, -6732.549316, 369509216.000000, 12928614.000000 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1377 Instrument: NIRSPEC DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1377 Instrument: NIRSPEC DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1378 Number of pixels in 2D array: 4194304 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1378 Number of pixels in 2D array: 4194304 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1379 Shape of 2D image: (2048, 2048) DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1379 Shape of 2D image: (2048, 2048) DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1380 Shape of data cube: (2, 2048, 2048) DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1380 Shape of data cube: (2, 2048, 2048) DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1381 Buffer size (bytes): 307200000 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1381 Buffer size (bytes): 307200000 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1382 Number of rows per buffer: 2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1382 Number of rows per buffer: 2048 INFO stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1383 Number of groups per integration: 2 INFO stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1383 Number of groups per integration: 2 INFO stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1384 Number of integrations: 1 INFO stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1384 Number of integrations: 1 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1385 The execution time in seconds: 7.370814 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1385 The execution time in seconds: 7.370814 INFO stpipe.Detector1Pipeline.ramp_fit:step.py:546 Step ramp_fit done INFO stpipe.Detector1Pipeline.gain_scale:step.py:430 Step gain_scale running with args (<ImageModel(2048, 2048) from nrs_verify_nrs1_jump.fits>,). INFO stpipe.Detector1Pipeline.gain_scale:step.py:434 Step gain_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'gain_scale', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} INFO stpipe.Detector1Pipeline.gain_scale:gain_scale.py:32 Rescaling by 1.0 INFO stpipe.Detector1Pipeline.gain_scale:gain_scale.py:32 Rescaling by 1.0 INFO stpipe.Detector1Pipeline.gain_scale:step.py:546 Step gain_scale done INFO stpipe.Detector1Pipeline.gain_scale:step.py:430 Step gain_scale running with args (<CubeModel(1, 2048, 2048) from nrs_verify_nrs1_jump.fits>,). INFO stpipe.Detector1Pipeline.gain_scale:step.py:434 Step gain_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'gain_scaleints', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} INFO stpipe.Detector1Pipeline.gain_scale:gain_scale.py:32 Rescaling by 1.0 INFO stpipe.Detector1Pipeline.gain_scale:gain_scale.py:32 Rescaling by 1.0 INFO stpipe.Detector1Pipeline.gain_scale:step.py:546 Step gain_scale done INFO stpipe.Detector1Pipeline:step.py:1016 Saved model in nrs_verify_nrs1_rateints.fits INFO stpipe.Detector1Pipeline:calwebb_detector1.py:153 ... ending calwebb_detector1 INFO stpipe.Detector1Pipeline:calwebb_detector1.py:153 ... ending calwebb_detector1 INFO stpipe.Detector1Pipeline:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Detector1Pipeline:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Detector1Pipeline:step.py:1016 Saved model in nrs_verify_nrs1_rate.fits INFO stpipe.Detector1Pipeline:step.py:546 Step Detector1Pipeline done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_verify.py::test_verify_detector1[saturation] | 2.09 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_verify.py::test_verify_detector1[superbias] | 2.22 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_verify.py::test_verify_detector1[refpix] | 1.22 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_verify.py::test_verify_detector1[linearity] | 1.61 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_verify.py::test_verify_detector1[dark_current] | 1.91 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_verify.py::test_verify_detector1[jump] | 2.13 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_verify.py::test_verify_detector1[rate] | 1.13 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_verify.py::test_verify_image2[assign_wcs] | 6.61 | |
|
-----------------------------Captured stderr setup------------------------------ 2022-10-06 05:11:30,678 - stpipe.Image2Pipeline - INFO - Image2Pipeline instance created. 2022-10-06 05:11:30,679 - stpipe.Image2Pipeline.bkg_subtract - INFO - BackgroundStep instance created. 2022-10-06 05:11:30,680 - stpipe.Image2Pipeline.assign_wcs - INFO - AssignWcsStep instance created. 2022-10-06 05:11:30,681 - stpipe.Image2Pipeline.flat_field - INFO - FlatFieldStep instance created. 2022-10-06 05:11:30,681 - stpipe.Image2Pipeline.photom - INFO - PhotomStep instance created. 2022-10-06 05:11:30,682 - stpipe.Image2Pipeline.resample - INFO - ResampleStep instance created. 2022-10-06 05:11:31,046 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_rate.fits',). 2022-10-06 05:11:31,050 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'save_bsub': False, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'inverse': False, 'source_type': None}, 'resample': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True}}} 2022-10-06 05:11:31,092 - stpipe.Image2Pipeline - INFO - Prefetching reference files for dataset: 'nrs_verify_nrs1_rate.fits' reftypes = ['camera', 'collimator', 'disperser', 'distortion', 'drizpars', 'filteroffset', 'fore', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'ote', 'photom', 'regions', 'specwcs', 'wavelengthrange', 'wfssbkg'] 2022-10-06 05:11:31,112 - stpipe.Image2Pipeline - INFO - Override for AREA reference file is '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/jwst_nirspec_area_0001.fits'. 2022-10-06 05:11:31,112 - stpipe.Image2Pipeline - INFO - Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0002.asdf'. 2022-10-06 05:11:31,113 - stpipe.Image2Pipeline - INFO - Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0002.asdf'. 2022-10-06 05:11:31,114 - stpipe.Image2Pipeline - INFO - Override for DFLAT reference file is 'N/A'. 2022-10-06 05:11:31,114 - stpipe.Image2Pipeline - INFO - Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0020.asdf'. 2022-10-06 05:11:31,115 - stpipe.Image2Pipeline - INFO - Prefetch for DISTORTION reference file is 'N/A'. 2022-10-06 05:11:31,115 - stpipe.Image2Pipeline - INFO - Prefetch for DRIZPARS reference file is 'N/A'. 2022-10-06 05:11:31,115 - stpipe.Image2Pipeline - INFO - Override for FFLAT reference file is 'N/A'. 2022-10-06 05:11:31,115 - stpipe.Image2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is 'N/A'. 2022-10-06 05:11:31,115 - stpipe.Image2Pipeline - INFO - Override for FLAT reference file is '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/jwst_nirspec_flat_0061.fits'. 2022-10-06 05:11:31,115 - stpipe.Image2Pipeline - INFO - Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0012.asdf'. 2022-10-06 05:11:31,116 - stpipe.Image2Pipeline - INFO - Override for FPA reference file is '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/jwst_nirspec_fpa_0005.asdf'. 2022-10-06 05:11:31,116 - stpipe.Image2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'. 2022-10-06 05:11:31,117 - stpipe.Image2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'. 2022-10-06 05:11:31,117 - stpipe.Image2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'. 2022-10-06 05:11:31,117 - stpipe.Image2Pipeline - INFO - Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0003.asdf'. 2022-10-06 05:11:31,118 - stpipe.Image2Pipeline - INFO - Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0002.asdf'. 2022-10-06 05:11:31,119 - stpipe.Image2Pipeline - INFO - Prefetch for PHOTOM reference file is 'N/A'. 2022-10-06 05:11:31,119 - stpipe.Image2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'. 2022-10-06 05:11:31,119 - stpipe.Image2Pipeline - INFO - Override for SFLAT reference file is 'N/A'. 2022-10-06 05:11:31,119 - stpipe.Image2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'. 2022-10-06 05:11:31,119 - stpipe.Image2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0002.asdf'. 2022-10-06 05:11:31,120 - stpipe.Image2Pipeline - INFO - Prefetch for WFSSBKG reference file is 'N/A'. 2022-10-06 05:11:31,120 - stpipe.Image2Pipeline - INFO - Starting calwebb_image2 ... 2022-10-06 05:11:31,120 - stpipe.Image2Pipeline - INFO - Processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1 2022-10-06 05:11:31,120 - stpipe.Image2Pipeline - INFO - Working on input /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_rate.fits ... 2022-10-06 05:11:31,433 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(2048, 2048) from nrs_verify_nrs1_rate.fits>,). 2022-10-06 05:11:31,434 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} 2022-10-06 05:11:31,609 - stpipe.Image2Pipeline.assign_wcs - INFO - gwa_ytilt is 0.1973863539999999 deg 2022-10-06 05:11:31,609 - stpipe.Image2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.338891834 deg 2022-10-06 05:11:31,609 - stpipe.Image2Pipeline.assign_wcs - INFO - theta_y correction: 0.00038973010203694256 deg 2022-10-06 05:11:31,610 - stpipe.Image2Pipeline.assign_wcs - INFO - theta_x correction: -8.547146608108846e-05 deg 2022-10-06 05:11:31,753 - stpipe.Image2Pipeline.assign_wcs - INFO - Combination F140X_MIRROR missing in wavelengthrange file, setting order to -1 and range to [6e-07, 5.3e-06]. 2022-10-06 05:11:31,883 - stpipe.Image2Pipeline.assign_wcs - INFO - Created a NIRSPEC nrs_verify pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0002.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0002.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0002.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0020.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0012.asdf', 'fpa': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0003.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0002.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} 2022-10-06 05:11:32,127 - stpipe.Image2Pipeline.assign_wcs - INFO - Update S_REGION to POLYGON ICRS 119.866914036 -68.668366479 119.866915895 -68.668383185 119.866870421 -68.668383357 119.866869560 -68.668366722 2022-10-06 05:11:32,128 - stpipe.Image2Pipeline.assign_wcs - INFO - assign_wcs updated S_REGION to POLYGON ICRS 119.866914036 -68.668366479 119.866915895 -68.668383185 119.866870421 -68.668383357 119.866869560 -68.668366722 2022-10-06 05:11:32,128 - stpipe.Image2Pipeline.assign_wcs - INFO - COMPLETED assign_wcs 2022-10-06 05:11:32,135 - stpipe.Image2Pipeline.assign_wcs - WARNING - Failed to update 'meta.wcsinfo' with FITS SIP approximation. Reported error is: 2022-10-06 05:11:32,135 - stpipe.Image2Pipeline.assign_wcs - WARNING - "A bounding_box is needed to proceed." 2022-10-06 05:11:32,525 - stpipe.Image2Pipeline.assign_wcs - INFO - Saved model in nrs_verify_nrs1_assign_wcs.fits 2022-10-06 05:11:32,525 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs done 2022-10-06 05:11:32,836 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field running with args (<ImageModel(2048, 2048) from nrs_verify_nrs1_assign_wcs.fits>,). 2022-10-06 05:11:32,837 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2022-10-06 05:11:32,844 - stpipe.Image2Pipeline.flat_field - WARNING - Exposure type is NRS_VERIFY; flat-fielding will be skipped because it is not currently supported for this mode. 2022-10-06 05:11:33,471 - stpipe.Image2Pipeline.flat_field - INFO - Saved model in nrs_verify_nrs1_flat_field.fits 2022-10-06 05:11:33,472 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field done 2022-10-06 05:11:33,756 - stpipe.Image2Pipeline.photom - INFO - Step photom running with args (<ImageModel(2048, 2048) from nrs_verify_nrs1_flat_field.fits>,). 2022-10-06 05:11:33,757 - stpipe.Image2Pipeline.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'inverse': False, 'source_type': None} 2022-10-06 05:11:33,772 - stpipe.Image2Pipeline.photom - INFO - Using photom reference file: N/A 2022-10-06 05:11:33,772 - stpipe.Image2Pipeline.photom - INFO - Using area reference file: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/jwst_nirspec_area_0001.fits 2022-10-06 05:11:33,772 - stpipe.Image2Pipeline.photom - WARNING - No PHOTOM reference file found 2022-10-06 05:11:33,772 - stpipe.Image2Pipeline.photom - WARNING - Photom step will be skipped 2022-10-06 05:11:34,338 - stpipe.Image2Pipeline.photom - INFO - Saved model in nrs_verify_nrs1_photom.fits 2022-10-06 05:11:34,338 - stpipe.Image2Pipeline.photom - INFO - Step photom done 2022-10-06 05:11:34,339 - stpipe.Image2Pipeline - INFO - Finished processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1 2022-10-06 05:11:34,340 - stpipe.Image2Pipeline - INFO - ... ending calwebb_image2 2022-10-06 05:11:34,340 - stpipe.Image2Pipeline - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 05:11:34,667 - stpipe.Image2Pipeline - INFO - Saved model in nrs_verify_nrs1_cal.fits 2022-10-06 05:11:34,667 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline done -------------------------------Captured log setup------------------------------- INFO stpipe.Image2Pipeline:step.py:366 Image2Pipeline instance created. INFO stpipe.Image2Pipeline.bkg_subtract:step.py:366 BackgroundStep instance created. INFO stpipe.Image2Pipeline.assign_wcs:step.py:366 AssignWcsStep instance created. INFO stpipe.Image2Pipeline.flat_field:step.py:366 FlatFieldStep instance created. INFO stpipe.Image2Pipeline.photom:step.py:366 PhotomStep instance created. INFO stpipe.Image2Pipeline.resample:step.py:366 ResampleStep instance created. INFO stpipe.Image2Pipeline:step.py:430 Step Image2Pipeline running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_rate.fits',). INFO stpipe.Image2Pipeline:step.py:434 Step Image2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'save_bsub': False, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'inverse': False, 'source_type': None}, 'resample': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True}}} INFO stpipe.Image2Pipeline:pipeline.py:358 Prefetching reference files for dataset: 'nrs_verify_nrs1_rate.fits' reftypes = ['camera', 'collimator', 'disperser', 'distortion', 'drizpars', 'filteroffset', 'fore', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'ote', 'photom', 'regions', 'specwcs', 'wavelengthrange', 'wfssbkg'] INFO stpipe.Image2Pipeline:pipeline.py:366 Override for AREA reference file is '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/jwst_nirspec_area_0001.fits'. INFO stpipe.Image2Pipeline:pipeline.py:366 Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0002.asdf'. INFO stpipe.Image2Pipeline:pipeline.py:366 Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0002.asdf'. INFO stpipe.Image2Pipeline:pipeline.py:366 Override for DFLAT reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:366 Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0020.asdf'. INFO stpipe.Image2Pipeline:pipeline.py:366 Prefetch for DISTORTION reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:366 Prefetch for DRIZPARS reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:366 Override for FFLAT reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:366 Prefetch for FILTEROFFSET reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:366 Override for FLAT reference file is '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/jwst_nirspec_flat_0061.fits'. INFO stpipe.Image2Pipeline:pipeline.py:366 Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0012.asdf'. INFO stpipe.Image2Pipeline:pipeline.py:366 Override for FPA reference file is '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/jwst_nirspec_fpa_0005.asdf'. INFO stpipe.Image2Pipeline:pipeline.py:366 Prefetch for IFUFORE reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:366 Prefetch for IFUPOST reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:366 Prefetch for IFUSLICER reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:366 Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0003.asdf'. INFO stpipe.Image2Pipeline:pipeline.py:366 Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0002.asdf'. INFO stpipe.Image2Pipeline:pipeline.py:366 Prefetch for PHOTOM reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:366 Prefetch for REGIONS reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:366 Override for SFLAT reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:366 Prefetch for SPECWCS reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:366 Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0002.asdf'. INFO stpipe.Image2Pipeline:pipeline.py:366 Prefetch for WFSSBKG reference file is 'N/A'. INFO stpipe.Image2Pipeline:calwebb_image2.py:49 Starting calwebb_image2 ... INFO stpipe.Image2Pipeline:calwebb_image2.py:58 Processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1 INFO stpipe.Image2Pipeline:calwebb_image2.py:124 Working on input /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_rate.fits ... INFO stpipe.Image2Pipeline.assign_wcs:step.py:430 Step assign_wcs running with args (<ImageModel(2048, 2048) from nrs_verify_nrs1_rate.fits>,). INFO stpipe.Image2Pipeline.assign_wcs:step.py:434 Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} DEBUG stpipe.Image2Pipeline.assign_wcs:assign_wcs_step.py:80 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0002.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0002.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0002.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0020.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0012.asdf', 'fpa': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0003.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0002.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.Image2Pipeline.assign_wcs:assign_wcs_step.py:80 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0002.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0002.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0002.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0020.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0012.asdf', 'fpa': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0003.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0002.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:1375 gwa_ytilt is 0.1973863539999999 deg INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:1375 gwa_ytilt is 0.1973863539999999 deg INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:1376 gwa_xtilt is 0.338891834 deg INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:1376 gwa_xtilt is 0.338891834 deg INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:1380 theta_y correction: 0.00038973010203694256 deg INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:1380 theta_y correction: 0.00038973010203694256 deg INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:1386 theta_x correction: -8.547146608108846e-05 deg INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:1386 theta_x correction: -8.547146608108846e-05 deg INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:777 Combination F140X_MIRROR missing in wavelengthrange file, setting order to -1 and range to [6e-07, 5.3e-06]. INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:777 Combination F140X_MIRROR missing in wavelengthrange file, setting order to -1 and range to [6e-07, 5.3e-06]. INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:62 Created a NIRSPEC nrs_verify pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0002.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0002.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0002.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0020.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0012.asdf', 'fpa': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0003.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0002.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:62 Created a NIRSPEC nrs_verify pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0002.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0002.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0002.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0020.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0012.asdf', 'fpa': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0003.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0002.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} INFO stpipe.Image2Pipeline.assign_wcs:util.py:1060 Update S_REGION to POLYGON ICRS 119.866914036 -68.668366479 119.866915895 -68.668383185 119.866870421 -68.668383357 119.866869560 -68.668366722 INFO stpipe.Image2Pipeline.assign_wcs:util.py:1060 Update S_REGION to POLYGON ICRS 119.866914036 -68.668366479 119.866915895 -68.668383185 119.866870421 -68.668383357 119.866869560 -68.668366722 INFO stpipe.Image2Pipeline.assign_wcs:assign_wcs.py:82 assign_wcs updated S_REGION to POLYGON ICRS 119.866914036 -68.668366479 119.866915895 -68.668383185 119.866870421 -68.668383357 119.866869560 -68.668366722 INFO stpipe.Image2Pipeline.assign_wcs:assign_wcs.py:82 assign_wcs updated S_REGION to POLYGON ICRS 119.866914036 -68.668366479 119.866915895 -68.668383185 119.866870421 -68.668383357 119.866869560 -68.668366722 INFO stpipe.Image2Pipeline.assign_wcs:assign_wcs.py:96 COMPLETED assign_wcs INFO stpipe.Image2Pipeline.assign_wcs:assign_wcs.py:96 COMPLETED assign_wcs WARNING stpipe.Image2Pipeline.assign_wcs:assign_wcs_step.py:111 Failed to update 'meta.wcsinfo' with FITS SIP approximation. Reported error is: WARNING stpipe.Image2Pipeline.assign_wcs:assign_wcs_step.py:111 Failed to update 'meta.wcsinfo' with FITS SIP approximation. Reported error is: WARNING stpipe.Image2Pipeline.assign_wcs:assign_wcs_step.py:111 "A bounding_box is needed to proceed." WARNING stpipe.Image2Pipeline.assign_wcs:assign_wcs_step.py:111 "A bounding_box is needed to proceed." INFO stpipe.Image2Pipeline.assign_wcs:step.py:1016 Saved model in nrs_verify_nrs1_assign_wcs.fits INFO stpipe.Image2Pipeline.assign_wcs:step.py:546 Step assign_wcs done INFO stpipe.Image2Pipeline.flat_field:step.py:430 Step flat_field running with args (<ImageModel(2048, 2048) from nrs_verify_nrs1_assign_wcs.fits>,). INFO stpipe.Image2Pipeline.flat_field:step.py:434 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.Image2Pipeline.flat_field:flat_field_step.py:74 Input is ImageModel of exposure type NRS_VERIFY WARNING stpipe.Image2Pipeline.flat_field:flat_field_step.py:80 Exposure type is NRS_VERIFY; flat-fielding will be skipped because it is not currently supported for this mode. INFO stpipe.Image2Pipeline.flat_field:step.py:1016 Saved model in nrs_verify_nrs1_flat_field.fits INFO stpipe.Image2Pipeline.flat_field:step.py:546 Step flat_field done INFO stpipe.Image2Pipeline.photom:step.py:430 Step photom running with args (<ImageModel(2048, 2048) from nrs_verify_nrs1_flat_field.fits>,). INFO stpipe.Image2Pipeline.photom:step.py:434 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'inverse': False, 'source_type': None} DEBUG stpipe.Image2Pipeline.photom:photom_step.py:35 Input is ImageModel INFO stpipe.Image2Pipeline.photom:photom_step.py:55 Using photom reference file: N/A INFO stpipe.Image2Pipeline.photom:photom_step.py:56 Using area reference file: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/jwst_nirspec_area_0001.fits WARNING stpipe.Image2Pipeline.photom:photom_step.py:60 No PHOTOM reference file found WARNING stpipe.Image2Pipeline.photom:photom_step.py:61 Photom step will be skipped INFO stpipe.Image2Pipeline.photom:step.py:1016 Saved model in nrs_verify_nrs1_photom.fits INFO stpipe.Image2Pipeline.photom:step.py:546 Step photom done INFO stpipe.Image2Pipeline:calwebb_image2.py:163 Finished processing product /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1 INFO stpipe.Image2Pipeline:calwebb_image2.py:79 ... ending calwebb_image2 INFO stpipe.Image2Pipeline:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Image2Pipeline:core.py:130 Results used CRDS context: jwst_0988.pmap INFO stpipe.Image2Pipeline:step.py:1016 Saved model in nrs_verify_nrs1_cal.fits INFO stpipe.Image2Pipeline:step.py:546 Step Image2Pipeline done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_verify.py::test_verify_image2[flat_field] | 1.01 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_verify.py::test_verify_image2[cal] | 0.97 | |
|
No log output captured. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_wcs.py::test_nirspec_fixedslit_wcs | 10.83 | |
|
------------------------------Captured stderr call------------------------------ 2022-10-06 05:11:39,052 - stpipe.AssignWcsStep - INFO - AssignWcsStep instance created. 2022-10-06 05:11:39,626 - stpipe.AssignWcsStep - INFO - Step AssignWcsStep running with args ('jw00023001001_01101_00001_nrs1_rate.fits',). 2022-10-06 05:11:39,628 - stpipe.AssignWcsStep - INFO - Step AssignWcsStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'assign_wcs', 'search_output_file': True, 'input_dir': '', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} 2022-10-06 05:11:39,907 - stpipe.AssignWcsStep - INFO - gwa_ytilt is 0.02 deg 2022-10-06 05:11:39,908 - stpipe.AssignWcsStep - INFO - gwa_xtilt is 0.01 deg 2022-10-06 05:11:39,908 - stpipe.AssignWcsStep - INFO - theta_y correction: 0.44965731468948844 deg 2022-10-06 05:11:39,909 - stpipe.AssignWcsStep - INFO - theta_x correction: 0.0 deg 2022-10-06 05:11:40,139 - stpipe.AssignWcsStep - INFO - Slits projected on detector NRS1: ['S200A1', 'S200A2', 'S400A1', 'S1600A1', 'S200B1'] 2022-10-06 05:11:40,139 - stpipe.AssignWcsStep - INFO - Computing WCS for 5 open slitlets 2022-10-06 05:11:40,177 - stpipe.AssignWcsStep - INFO - gwa_ytilt is 0.02 deg 2022-10-06 05:11:40,177 - stpipe.AssignWcsStep - INFO - gwa_xtilt is 0.01 deg 2022-10-06 05:11:40,177 - stpipe.AssignWcsStep - INFO - theta_y correction: 0.44965731468948844 deg 2022-10-06 05:11:40,178 - stpipe.AssignWcsStep - INFO - theta_x correction: 0.0 deg 2022-10-06 05:11:40,194 - stpipe.AssignWcsStep - INFO - SPORDER= -1, wrange=[7e-07, 1.27e-06] 2022-10-06 05:11:40,348 - stpipe.AssignWcsStep - INFO - There are 0 open slits in quadrant 1 2022-10-06 05:11:40,348 - stpipe.AssignWcsStep - INFO - There are 0 open slits in quadrant 2 2022-10-06 05:11:40,348 - stpipe.AssignWcsStep - INFO - There are 0 open slits in quadrant 3 2022-10-06 05:11:40,349 - stpipe.AssignWcsStep - INFO - There are 0 open slits in quadrant 4 2022-10-06 05:11:40,349 - stpipe.AssignWcsStep - INFO - There are 5 open slits in quadrant 5 2022-10-06 05:11:40,548 - stpipe.AssignWcsStep - INFO - Created a NIRSPEC nrs_fixedslit pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0033.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0026.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} 2022-10-06 05:11:40,847 - stpipe.AssignWcsStep - INFO - COMPLETED assign_wcs 2022-10-06 05:11:40,860 - stpipe.AssignWcsStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 05:11:41,429 - stpipe.AssignWcsStep - INFO - Saved model in jw00023001001_01101_00001_nrs1_assign_wcs.fits 2022-10-06 05:11:41,429 - stpipe.AssignWcsStep - INFO - Step AssignWcsStep done -------------------------------Captured log call-------------------------------- INFO stpipe.AssignWcsStep:step.py:366 AssignWcsStep instance created. INFO stpipe.AssignWcsStep:step.py:430 Step AssignWcsStep running with args ('jw00023001001_01101_00001_nrs1_rate.fits',). INFO stpipe.AssignWcsStep:step.py:434 Step AssignWcsStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'assign_wcs', 'search_output_file': True, 'input_dir': '', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} DEBUG stpipe.AssignWcsStep:assign_wcs_step.py:80 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0033.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0026.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.AssignWcsStep:assign_wcs_step.py:80 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0033.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0026.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} INFO stpipe.AssignWcsStep:nirspec.py:1375 gwa_ytilt is 0.02 deg INFO stpipe.AssignWcsStep:nirspec.py:1375 gwa_ytilt is 0.02 deg INFO stpipe.AssignWcsStep:nirspec.py:1376 gwa_xtilt is 0.01 deg INFO stpipe.AssignWcsStep:nirspec.py:1376 gwa_xtilt is 0.01 deg INFO stpipe.AssignWcsStep:nirspec.py:1380 theta_y correction: 0.44965731468948844 deg INFO stpipe.AssignWcsStep:nirspec.py:1380 theta_y correction: 0.44965731468948844 deg INFO stpipe.AssignWcsStep:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.AssignWcsStep:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.AssignWcsStep:nirspec.py:424 Slits projected on detector NRS1: ['S200A1', 'S200A2', 'S400A1', 'S1600A1', 'S200B1'] INFO stpipe.AssignWcsStep:nirspec.py:424 Slits projected on detector NRS1: ['S200A1', 'S200A2', 'S400A1', 'S1600A1', 'S200B1'] INFO stpipe.AssignWcsStep:nirspec.py:308 Computing WCS for 5 open slitlets INFO stpipe.AssignWcsStep:nirspec.py:308 Computing WCS for 5 open slitlets INFO stpipe.AssignWcsStep:nirspec.py:1375 gwa_ytilt is 0.02 deg INFO stpipe.AssignWcsStep:nirspec.py:1375 gwa_ytilt is 0.02 deg INFO stpipe.AssignWcsStep:nirspec.py:1376 gwa_xtilt is 0.01 deg INFO stpipe.AssignWcsStep:nirspec.py:1376 gwa_xtilt is 0.01 deg INFO stpipe.AssignWcsStep:nirspec.py:1380 theta_y correction: 0.44965731468948844 deg INFO stpipe.AssignWcsStep:nirspec.py:1380 theta_y correction: 0.44965731468948844 deg INFO stpipe.AssignWcsStep:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.AssignWcsStep:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.AssignWcsStep:nirspec.py:330 SPORDER= -1, wrange=[7e-07, 1.27e-06] INFO stpipe.AssignWcsStep:nirspec.py:330 SPORDER= -1, wrange=[7e-07, 1.27e-06] INFO stpipe.AssignWcsStep:nirspec.py:1020 There are 0 open slits in quadrant 1 INFO stpipe.AssignWcsStep:nirspec.py:1020 There are 0 open slits in quadrant 1 INFO stpipe.AssignWcsStep:nirspec.py:1020 There are 0 open slits in quadrant 2 INFO stpipe.AssignWcsStep:nirspec.py:1020 There are 0 open slits in quadrant 2 INFO stpipe.AssignWcsStep:nirspec.py:1020 There are 0 open slits in quadrant 3 INFO stpipe.AssignWcsStep:nirspec.py:1020 There are 0 open slits in quadrant 3 INFO stpipe.AssignWcsStep:nirspec.py:1020 There are 0 open slits in quadrant 4 INFO stpipe.AssignWcsStep:nirspec.py:1020 There are 0 open slits in quadrant 4 INFO stpipe.AssignWcsStep:nirspec.py:1020 There are 5 open slits in quadrant 5 INFO stpipe.AssignWcsStep:nirspec.py:1020 There are 5 open slits in quadrant 5 INFO stpipe.AssignWcsStep:nirspec.py:62 Created a NIRSPEC nrs_fixedslit pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0033.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0026.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} INFO stpipe.AssignWcsStep:nirspec.py:62 Created a NIRSPEC nrs_fixedslit pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0033.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0026.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} INFO stpipe.AssignWcsStep:assign_wcs.py:96 COMPLETED assign_wcs INFO stpipe.AssignWcsStep:assign_wcs.py:96 COMPLETED assign_wcs INFO stpipe.AssignWcsStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.AssignWcsStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.AssignWcsStep:step.py:1016 Saved model in jw00023001001_01101_00001_nrs1_assign_wcs.fits INFO stpipe.AssignWcsStep:step.py:546 Step AssignWcsStep done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_wcs.py::test_nirspec_mos_wcs | 4.74 | |
|
------------------------------Captured stderr call------------------------------ 2022-10-06 05:11:49,583 - stpipe.AssignWcsStep - INFO - AssignWcsStep instance created. 2022-10-06 05:11:50,436 - stpipe.AssignWcsStep - INFO - Step AssignWcsStep running with args ('msa_patt_num.fits',). 2022-10-06 05:11:50,439 - stpipe.AssignWcsStep - INFO - Step AssignWcsStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'assign_wcs', 'search_output_file': True, 'input_dir': '', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} 2022-10-06 05:11:50,847 - stpipe.AssignWcsStep - INFO - Retrieving open MSA slitlets for msa_metadata_id = 1 and dither_index = 1 2022-10-06 05:11:50,897 - stpipe.AssignWcsStep - INFO - gwa_ytilt is 0.1789360195398331 deg 2022-10-06 05:11:50,897 - stpipe.AssignWcsStep - INFO - gwa_xtilt is 0.2856041491031647 deg 2022-10-06 05:11:50,898 - stpipe.AssignWcsStep - INFO - theta_y correction: 0.000963676070271049 deg 2022-10-06 05:11:50,899 - stpipe.AssignWcsStep - INFO - theta_x correction: 0.0 deg 2022-10-06 05:11:51,130 - stpipe.AssignWcsStep - INFO - Slits projected on detector NRS1: [1] 2022-10-06 05:11:51,130 - stpipe.AssignWcsStep - INFO - Computing WCS for 1 open slitlets 2022-10-06 05:11:51,174 - stpipe.AssignWcsStep - INFO - gwa_ytilt is 0.1789360195398331 deg 2022-10-06 05:11:51,174 - stpipe.AssignWcsStep - INFO - gwa_xtilt is 0.2856041491031647 deg 2022-10-06 05:11:51,175 - stpipe.AssignWcsStep - INFO - theta_y correction: 0.000963676070271049 deg 2022-10-06 05:11:51,176 - stpipe.AssignWcsStep - INFO - theta_x correction: 0.0 deg 2022-10-06 05:11:51,192 - stpipe.AssignWcsStep - INFO - SPORDER= -1, wrange=[2.9e-06, 5.3e-06] 2022-10-06 05:11:51,368 - stpipe.AssignWcsStep - INFO - There are 0 open slits in quadrant 1 2022-10-06 05:11:51,368 - stpipe.AssignWcsStep - INFO - There are 0 open slits in quadrant 2 2022-10-06 05:11:51,368 - stpipe.AssignWcsStep - INFO - There are 1 open slits in quadrant 3 2022-10-06 05:11:51,378 - stpipe.AssignWcsStep - INFO - There are 0 open slits in quadrant 4 2022-10-06 05:11:51,378 - stpipe.AssignWcsStep - INFO - There are 0 open slits in quadrant 5 2022-10-06 05:11:51,423 - stpipe.AssignWcsStep - INFO - Created a NIRSPEC nrs_msaspec pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0036.asdf', 'fore': None, 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None, 'msametafile': 'V9621500100101_short_msa.fits'} 2022-10-06 05:11:51,557 - stpipe.AssignWcsStep - INFO - COMPLETED assign_wcs 2022-10-06 05:11:51,571 - stpipe.AssignWcsStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 05:11:51,832 - stpipe.AssignWcsStep - INFO - Saved model in msa_patt_num_assign_wcs.fits 2022-10-06 05:11:51,832 - stpipe.AssignWcsStep - INFO - Step AssignWcsStep done 2022-10-06 05:11:53,061 - stpipe - INFO - MSA metadata file not in reference files dict 2022-10-06 05:11:53,061 - stpipe - INFO - Getting MSA metadata file from MSAMETFL keyword 2022-10-06 05:11:53,071 - stpipe - INFO - Retrieving open MSA slitlets for msa_metadata_id = 1 and dither_index = 1 -------------------------------Captured log call-------------------------------- INFO stpipe.AssignWcsStep:step.py:366 AssignWcsStep instance created. INFO stpipe.AssignWcsStep:step.py:430 Step AssignWcsStep running with args ('msa_patt_num.fits',). INFO stpipe.AssignWcsStep:step.py:434 Step AssignWcsStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'assign_wcs', 'search_output_file': True, 'input_dir': '', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} DEBUG stpipe.AssignWcsStep:assign_wcs_step.py:80 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0036.asdf', 'fore': 'N/A', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.AssignWcsStep:assign_wcs_step.py:80 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0036.asdf', 'fore': 'N/A', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.AssignWcsStep:nirspec.py:605 msa_data with msa_metadata_id = 1 [(1, 1, 3, 319, 13, 1, 'N', 'OPEN', 0.0, 0.0, 1, 'Y')] DEBUG stpipe.AssignWcsStep:nirspec.py:605 msa_data with msa_metadata_id = 1 [(1, 1, 3, 319, 13, 1, 'N', 'OPEN', 0.0, 0.0, 1, 'Y')] INFO stpipe.AssignWcsStep:nirspec.py:606 Retrieving open MSA slitlets for msa_metadata_id = 1 and dither_index = 1 INFO stpipe.AssignWcsStep:nirspec.py:606 Retrieving open MSA slitlets for msa_metadata_id = 1 and dither_index = 1 INFO stpipe.AssignWcsStep:nirspec.py:1375 gwa_ytilt is 0.1789360195398331 deg INFO stpipe.AssignWcsStep:nirspec.py:1375 gwa_ytilt is 0.1789360195398331 deg INFO stpipe.AssignWcsStep:nirspec.py:1376 gwa_xtilt is 0.2856041491031647 deg INFO stpipe.AssignWcsStep:nirspec.py:1376 gwa_xtilt is 0.2856041491031647 deg INFO stpipe.AssignWcsStep:nirspec.py:1380 theta_y correction: 0.000963676070271049 deg INFO stpipe.AssignWcsStep:nirspec.py:1380 theta_y correction: 0.000963676070271049 deg INFO stpipe.AssignWcsStep:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.AssignWcsStep:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.AssignWcsStep:nirspec.py:424 Slits projected on detector NRS1: [1] INFO stpipe.AssignWcsStep:nirspec.py:424 Slits projected on detector NRS1: [1] INFO stpipe.AssignWcsStep:nirspec.py:308 Computing WCS for 1 open slitlets INFO stpipe.AssignWcsStep:nirspec.py:308 Computing WCS for 1 open slitlets INFO stpipe.AssignWcsStep:nirspec.py:1375 gwa_ytilt is 0.1789360195398331 deg INFO stpipe.AssignWcsStep:nirspec.py:1375 gwa_ytilt is 0.1789360195398331 deg INFO stpipe.AssignWcsStep:nirspec.py:1376 gwa_xtilt is 0.2856041491031647 deg INFO stpipe.AssignWcsStep:nirspec.py:1376 gwa_xtilt is 0.2856041491031647 deg INFO stpipe.AssignWcsStep:nirspec.py:1380 theta_y correction: 0.000963676070271049 deg INFO stpipe.AssignWcsStep:nirspec.py:1380 theta_y correction: 0.000963676070271049 deg INFO stpipe.AssignWcsStep:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.AssignWcsStep:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.AssignWcsStep:nirspec.py:330 SPORDER= -1, wrange=[2.9e-06, 5.3e-06] INFO stpipe.AssignWcsStep:nirspec.py:330 SPORDER= -1, wrange=[2.9e-06, 5.3e-06] INFO stpipe.AssignWcsStep:nirspec.py:1020 There are 0 open slits in quadrant 1 INFO stpipe.AssignWcsStep:nirspec.py:1020 There are 0 open slits in quadrant 1 INFO stpipe.AssignWcsStep:nirspec.py:1020 There are 0 open slits in quadrant 2 INFO stpipe.AssignWcsStep:nirspec.py:1020 There are 0 open slits in quadrant 2 INFO stpipe.AssignWcsStep:nirspec.py:1020 There are 1 open slits in quadrant 3 INFO stpipe.AssignWcsStep:nirspec.py:1020 There are 1 open slits in quadrant 3 INFO stpipe.AssignWcsStep:nirspec.py:1020 There are 0 open slits in quadrant 4 INFO stpipe.AssignWcsStep:nirspec.py:1020 There are 0 open slits in quadrant 4 INFO stpipe.AssignWcsStep:nirspec.py:1020 There are 0 open slits in quadrant 5 INFO stpipe.AssignWcsStep:nirspec.py:1020 There are 0 open slits in quadrant 5 INFO stpipe.AssignWcsStep:nirspec.py:62 Created a NIRSPEC nrs_msaspec pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0036.asdf', 'fore': None, 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None, 'msametafile': 'V9621500100101_short_msa.fits'} INFO stpipe.AssignWcsStep:nirspec.py:62 Created a NIRSPEC nrs_msaspec pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0036.asdf', 'fore': None, 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None, 'msametafile': 'V9621500100101_short_msa.fits'} INFO stpipe.AssignWcsStep:assign_wcs.py:96 COMPLETED assign_wcs INFO stpipe.AssignWcsStep:assign_wcs.py:96 COMPLETED assign_wcs INFO stpipe.AssignWcsStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.AssignWcsStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.AssignWcsStep:step.py:1016 Saved model in msa_patt_num_assign_wcs.fits INFO stpipe.AssignWcsStep:step.py:546 Step AssignWcsStep done INFO stpipe:nirspec.py:473 MSA metadata file not in reference files dict INFO stpipe:nirspec.py:473 MSA metadata file not in reference files dict INFO stpipe:nirspec.py:474 Getting MSA metadata file from MSAMETFL keyword INFO stpipe:nirspec.py:474 Getting MSA metadata file from MSAMETFL keyword DEBUG stpipe:nirspec.py:605 msa_data with msa_metadata_id = 1 [(1, 1, 3, 319, 13, 1, 'N', 'OPEN', 0.0, 0.0, 1, 'Y')] DEBUG stpipe:nirspec.py:605 msa_data with msa_metadata_id = 1 [(1, 1, 3, 319, 13, 1, 'N', 'OPEN', 0.0, 0.0, 1, 'Y')] INFO stpipe:nirspec.py:606 Retrieving open MSA slitlets for msa_metadata_id = 1 and dither_index = 1 INFO stpipe:nirspec.py:606 Retrieving open MSA slitlets for msa_metadata_id = 1 and dither_index = 1 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_wcs.py::test_nirspec_ifu_wcs[nrs1_f170lp] | 51.25 | |
|
------------------------------Captured stderr call------------------------------ 2022-10-06 05:11:54,172 - stpipe.AssignWcsStep - INFO - AssignWcsStep instance created. 2022-10-06 05:11:54,598 - stpipe.AssignWcsStep - INFO - Step AssignWcsStep running with args ('jw00011001001_01120_00001_nrs1_rate.fits',). 2022-10-06 05:11:54,600 - stpipe.AssignWcsStep - INFO - Step AssignWcsStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'assign_wcs', 'search_output_file': True, 'input_dir': '', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} 2022-10-06 05:11:54,961 - stpipe.AssignWcsStep - INFO - gwa_ytilt is None deg 2022-10-06 05:11:54,961 - stpipe.AssignWcsStep - INFO - gwa_xtilt is None deg 2022-10-06 05:11:54,961 - stpipe.AssignWcsStep - INFO - gwa_xtilt not applied 2022-10-06 05:11:54,961 - stpipe.AssignWcsStep - INFO - gwa_ytilt not applied 2022-10-06 05:11:59,009 - stpipe.AssignWcsStep - INFO - Created a NIRSPEC nrs_ifu pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0031.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} 2022-10-06 05:12:08,082 - stpipe.AssignWcsStep - INFO - Update S_REGION to POLYGON ICRS 5.845081040 -13.528159859 5.846349205 -13.528159859 5.846349205 -13.526980562 5.845081040 -13.526980562 2022-10-06 05:12:08,084 - stpipe.AssignWcsStep - INFO - COMPLETED assign_wcs 2022-10-06 05:12:08,097 - stpipe.AssignWcsStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 05:12:11,200 - stpipe.AssignWcsStep - INFO - Saved model in jw00011001001_01120_00001_nrs1_assign_wcs.fits 2022-10-06 05:12:11,200 - stpipe.AssignWcsStep - INFO - Step AssignWcsStep done -------------------------------Captured log call-------------------------------- INFO stpipe.AssignWcsStep:step.py:366 AssignWcsStep instance created. INFO stpipe.AssignWcsStep:step.py:430 Step AssignWcsStep running with args ('jw00011001001_01120_00001_nrs1_rate.fits',). INFO stpipe.AssignWcsStep:step.py:434 Step AssignWcsStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'assign_wcs', 'search_output_file': True, 'input_dir': '', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} DEBUG stpipe.AssignWcsStep:assign_wcs_step.py:80 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0031.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} DEBUG stpipe.AssignWcsStep:assign_wcs_step.py:80 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0031.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} INFO stpipe.AssignWcsStep:nirspec.py:1375 gwa_ytilt is None deg INFO stpipe.AssignWcsStep:nirspec.py:1375 gwa_ytilt is None deg INFO stpipe.AssignWcsStep:nirspec.py:1376 gwa_xtilt is None deg INFO stpipe.AssignWcsStep:nirspec.py:1376 gwa_xtilt is None deg INFO stpipe.AssignWcsStep:nirspec.py:1383 gwa_xtilt not applied INFO stpipe.AssignWcsStep:nirspec.py:1383 gwa_xtilt not applied INFO stpipe.AssignWcsStep:nirspec.py:1389 gwa_ytilt not applied INFO stpipe.AssignWcsStep:nirspec.py:1389 gwa_ytilt not applied INFO stpipe.AssignWcsStep:nirspec.py:62 Created a NIRSPEC nrs_ifu pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0031.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} INFO stpipe.AssignWcsStep:nirspec.py:62 Created a NIRSPEC nrs_ifu pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0031.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} INFO stpipe.AssignWcsStep:util.py:1060 Update S_REGION to POLYGON ICRS 5.845081040 -13.528159859 5.846349205 -13.528159859 5.846349205 -13.526980562 5.845081040 -13.526980562 INFO stpipe.AssignWcsStep:util.py:1060 Update S_REGION to POLYGON ICRS 5.845081040 -13.528159859 5.846349205 -13.528159859 5.846349205 -13.526980562 5.845081040 -13.526980562 INFO stpipe.AssignWcsStep:assign_wcs.py:96 COMPLETED assign_wcs INFO stpipe.AssignWcsStep:assign_wcs.py:96 COMPLETED assign_wcs INFO stpipe.AssignWcsStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.AssignWcsStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.AssignWcsStep:step.py:1016 Saved model in jw00011001001_01120_00001_nrs1_assign_wcs.fits INFO stpipe.AssignWcsStep:step.py:546 Step AssignWcsStep done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_wcs.py::test_nirspec_ifu_wcs[nrs1_opaque] | 59.03 | |
|
------------------------------Captured stderr call------------------------------ 2022-10-06 05:12:45,325 - stpipe.AssignWcsStep - INFO - AssignWcsStep instance created. 2022-10-06 05:12:47,265 - stpipe.AssignWcsStep - INFO - Step AssignWcsStep running with args ('jw00011001001_01120_00002_nrs1_rate.fits',). 2022-10-06 05:12:47,268 - stpipe.AssignWcsStep - INFO - Step AssignWcsStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'assign_wcs', 'search_output_file': True, 'input_dir': '', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} 2022-10-06 05:12:47,645 - stpipe.AssignWcsStep - INFO - gwa_ytilt is None deg 2022-10-06 05:12:47,645 - stpipe.AssignWcsStep - INFO - gwa_xtilt is None deg 2022-10-06 05:12:47,645 - stpipe.AssignWcsStep - INFO - gwa_xtilt not applied 2022-10-06 05:12:47,645 - stpipe.AssignWcsStep - INFO - gwa_ytilt not applied 2022-10-06 05:12:47,660 - stpipe.AssignWcsStep - INFO - Combination CLOSE_G235H missing in wavelengthrange file, setting order to -1 and range to [1.66e-06, 3.17e-06]. 2022-10-06 05:12:52,062 - stpipe.AssignWcsStep - INFO - Created a NIRSPEC nrs_ifu pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0031.asdf', 'fore': None, 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} 2022-10-06 05:13:00,023 - stpipe.AssignWcsStep - INFO - Update S_REGION to POLYGON ICRS 0.040606524 -0.001130752 0.042168460 -0.001130752 0.042168460 0.000810665 0.040606524 0.000810665 2022-10-06 05:13:00,024 - stpipe.AssignWcsStep - INFO - COMPLETED assign_wcs 2022-10-06 05:13:00,037 - stpipe.AssignWcsStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 05:13:03,715 - stpipe.AssignWcsStep - INFO - Saved model in jw00011001001_01120_00002_nrs1_assign_wcs.fits 2022-10-06 05:13:03,715 - stpipe.AssignWcsStep - INFO - Step AssignWcsStep done -------------------------------Captured log call-------------------------------- INFO stpipe.AssignWcsStep:step.py:366 AssignWcsStep instance created. INFO stpipe.AssignWcsStep:step.py:430 Step AssignWcsStep running with args ('jw00011001001_01120_00002_nrs1_rate.fits',). INFO stpipe.AssignWcsStep:step.py:434 Step AssignWcsStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'assign_wcs', 'search_output_file': True, 'input_dir': '', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} DEBUG stpipe.AssignWcsStep:assign_wcs_step.py:80 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0031.asdf', 'fore': 'N/A', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} DEBUG stpipe.AssignWcsStep:assign_wcs_step.py:80 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0031.asdf', 'fore': 'N/A', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} INFO stpipe.AssignWcsStep:nirspec.py:1375 gwa_ytilt is None deg INFO stpipe.AssignWcsStep:nirspec.py:1375 gwa_ytilt is None deg INFO stpipe.AssignWcsStep:nirspec.py:1376 gwa_xtilt is None deg INFO stpipe.AssignWcsStep:nirspec.py:1376 gwa_xtilt is None deg INFO stpipe.AssignWcsStep:nirspec.py:1383 gwa_xtilt not applied INFO stpipe.AssignWcsStep:nirspec.py:1383 gwa_xtilt not applied INFO stpipe.AssignWcsStep:nirspec.py:1389 gwa_ytilt not applied INFO stpipe.AssignWcsStep:nirspec.py:1389 gwa_ytilt not applied INFO stpipe.AssignWcsStep:nirspec.py:777 Combination CLOSE_G235H missing in wavelengthrange file, setting order to -1 and range to [1.66e-06, 3.17e-06]. INFO stpipe.AssignWcsStep:nirspec.py:777 Combination CLOSE_G235H missing in wavelengthrange file, setting order to -1 and range to [1.66e-06, 3.17e-06]. INFO stpipe.AssignWcsStep:nirspec.py:62 Created a NIRSPEC nrs_ifu pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0031.asdf', 'fore': None, 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} INFO stpipe.AssignWcsStep:nirspec.py:62 Created a NIRSPEC nrs_ifu pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0031.asdf', 'fore': None, 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} INFO stpipe.AssignWcsStep:util.py:1060 Update S_REGION to POLYGON ICRS 0.040606524 -0.001130752 0.042168460 -0.001130752 0.042168460 0.000810665 0.040606524 0.000810665 INFO stpipe.AssignWcsStep:util.py:1060 Update S_REGION to POLYGON ICRS 0.040606524 -0.001130752 0.042168460 -0.001130752 0.042168460 0.000810665 0.040606524 0.000810665 INFO stpipe.AssignWcsStep:assign_wcs.py:96 COMPLETED assign_wcs INFO stpipe.AssignWcsStep:assign_wcs.py:96 COMPLETED assign_wcs INFO stpipe.AssignWcsStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.AssignWcsStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.AssignWcsStep:step.py:1016 Saved model in jw00011001001_01120_00002_nrs1_assign_wcs.fits INFO stpipe.AssignWcsStep:step.py:546 Step AssignWcsStep done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/jwst/regtest/test_nirspec_wcs.py::test_nirspec_ifu_wcs[nrs2_f170lp] | 60.05 | |
|
------------------------------Captured stderr call------------------------------ 2022-10-06 05:13:44,803 - stpipe.AssignWcsStep - INFO - AssignWcsStep instance created. 2022-10-06 05:13:46,075 - stpipe.AssignWcsStep - INFO - Step AssignWcsStep running with args ('jw00011001001_01120_00003_nrs2_rate.fits',). 2022-10-06 05:13:46,077 - stpipe.AssignWcsStep - INFO - Step AssignWcsStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'assign_wcs', 'search_output_file': True, 'input_dir': '', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} 2022-10-06 05:13:46,508 - stpipe.AssignWcsStep - INFO - gwa_ytilt is 0.13924076 deg 2022-10-06 05:13:46,508 - stpipe.AssignWcsStep - INFO - gwa_xtilt is 0.35272044 deg 2022-10-06 05:13:46,509 - stpipe.AssignWcsStep - INFO - theta_y correction: 0.0010759379671938202 deg 2022-10-06 05:13:46,510 - stpipe.AssignWcsStep - INFO - theta_x correction: 0.0 deg 2022-10-06 05:13:50,459 - stpipe.AssignWcsStep - INFO - Created a NIRSPEC nrs_ifu pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0031.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} 2022-10-06 05:14:01,165 - stpipe.AssignWcsStep - INFO - Update S_REGION to POLYGON ICRS 5.845079681 -13.528159956 5.846347622 -13.528159956 5.846347622 -13.526980662 5.845079681 -13.526980662 2022-10-06 05:14:01,166 - stpipe.AssignWcsStep - INFO - COMPLETED assign_wcs 2022-10-06 05:14:01,179 - stpipe.AssignWcsStep - INFO - Results used CRDS context: jwst_0988.pmap 2022-10-06 05:14:04,558 - stpipe.AssignWcsStep - INFO - Saved model in jw00011001001_01120_00003_nrs2_assign_wcs.fits 2022-10-06 05:14:04,558 - stpipe.AssignWcsStep - INFO - Step AssignWcsStep done -------------------------------Captured log call-------------------------------- INFO stpipe.AssignWcsStep:step.py:366 AssignWcsStep instance created. INFO stpipe.AssignWcsStep:step.py:430 Step AssignWcsStep running with args ('jw00011001001_01120_00003_nrs2_rate.fits',). INFO stpipe.AssignWcsStep:step.py:434 Step AssignWcsStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'assign_wcs', 'search_output_file': True, 'input_dir': '', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} DEBUG stpipe.AssignWcsStep:assign_wcs_step.py:80 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0031.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} DEBUG stpipe.AssignWcsStep:assign_wcs_step.py:80 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0031.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} INFO stpipe.AssignWcsStep:nirspec.py:1375 gwa_ytilt is 0.13924076 deg INFO stpipe.AssignWcsStep:nirspec.py:1375 gwa_ytilt is 0.13924076 deg INFO stpipe.AssignWcsStep:nirspec.py:1376 gwa_xtilt is 0.35272044 deg INFO stpipe.AssignWcsStep:nirspec.py:1376 gwa_xtilt is 0.35272044 deg INFO stpipe.AssignWcsStep:nirspec.py:1380 theta_y correction: 0.0010759379671938202 deg INFO stpipe.AssignWcsStep:nirspec.py:1380 theta_y correction: 0.0010759379671938202 deg INFO stpipe.AssignWcsStep:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.AssignWcsStep:nirspec.py:1386 theta_x correction: 0.0 deg INFO stpipe.AssignWcsStep:nirspec.py:62 Created a NIRSPEC nrs_ifu pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0031.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} INFO stpipe.AssignWcsStep:nirspec.py:62 Created a NIRSPEC nrs_ifu pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0005.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0031.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} INFO stpipe.AssignWcsStep:util.py:1060 Update S_REGION to POLYGON ICRS 5.845079681 -13.528159956 5.846347622 -13.528159956 5.846347622 -13.526980662 5.845079681 -13.526980662 INFO stpipe.AssignWcsStep:util.py:1060 Update S_REGION to POLYGON ICRS 5.845079681 -13.528159956 5.846347622 -13.528159956 5.846347622 -13.526980662 5.845079681 -13.526980662 INFO stpipe.AssignWcsStep:assign_wcs.py:96 COMPLETED assign_wcs INFO stpipe.AssignWcsStep:assign_wcs.py:96 COMPLETED assign_wcs INFO stpipe.AssignWcsStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.AssignWcsStep:core.py:90 Results used CRDS context: jwst_0988.pmap INFO stpipe.AssignWcsStep:step.py:1016 Saved model in jw00011001001_01120_00003_nrs2_assign_wcs.fits INFO stpipe.AssignWcsStep:step.py:546 Step AssignWcsStep done | |||
